Psyllid ID: psy15773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MAEGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK
Secondary Structure (PSIPRED)
ccccccccccccEEEEEccccccEEEccHHHHHHHHccccccccccccccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEcEEEEEEcccccEEEEcHHHHHHHHHcccccccHHHcccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
MAEGPVQDLYTGLkvryddekkrvVVEPLELAQEFRKFqletpweqfpnfrntpgssgseeipldekkeeekk
Flexible Loop (DISEMBL)
maegpvqdlytglkvryddekkrVVVEPLELAQEFRKfqletpweqfpnfrntpgssgseeipldekkeeekk
Low Complexity Region (SEG)
MAEGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDekkeeekk
Disordered region (IsUnstruct)
********LYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ***************************
Disordered Region (DISOPRED)
**EGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPN************************
Disordered Region (DISEMBL)
MAEGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRN*********************
Disordered Region (DISPRO)
****PVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFR**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEGPVQDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q9DCT2	263	NADH dehydrogenase [ubiqu	yes	N/A	0.602	0.167	0.659	2e-10
P23709	266	NADH dehydrogenase [ubiqu	yes	N/A	0.602	0.165	0.659	2e-10
O75489	264	NADH dehydrogenase [ubiqu	yes	N/A	0.602	0.166	0.659	3e-10
Q0MQG6	263	NADH dehydrogenase [ubiqu	N/A	N/A	0.602	0.167	0.659	3e-10
Q0MQG8	264	NADH dehydrogenase [ubiqu	yes	N/A	0.602	0.166	0.659	3e-10
Q0MQG7	263	NADH dehydrogenase [ubiqu	N/A	N/A	0.602	0.167	0.659	3e-10
P86217	94	NADH dehydrogenase [ubiqu	N/A	N/A	0.493	0.382	0.722	8e-09
O21271	204	NADH-ubiquinone oxidoredu	N/A	N/A	0.465	0.166	0.647	1e-06
P34944	195	NADH dehydrogenase [ubiqu	N/A	N/A	0.465	0.174	0.617	3e-06
A8I3Y9	211	NADH-quinone oxidoreducta	yes	N/A	0.452	0.156	0.666	4e-06

>sp|Q9DCT2|NDUS3_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Mus musculus GN=Ndufs3 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
           +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct: 207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 250

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp|P23709|NDUS3_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Bos taurus GN=NDUFS3 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
           +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct: 210 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 253

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O75489|NDUS3_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
           +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct: 208 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 251

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQG6|NDUS3_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pongo pygmaeus GN=NDUFS3 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
           +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct: 207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 250

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQG8|NDUS3_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pan troglodytes GN=NDUFS3 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
           +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct: 208 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 251

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQG7|NDUS3_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS3 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
           +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct: 207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 250

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P86217|NDUS3_MESAU NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (Fragments) OS=Mesocricetus auratus GN=NDUFS3 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 16 RYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFR 51
          +YDDE KRVV EP+ELAQEFRKF L +PWE FP +R
Sbjct: 59 KYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYR 94

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mesocricetus auratus (taxid: 10036)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O21271|NDUS3_RECAM NADH-ubiquinone oxidoreductase subunit 9 OS=Reclinomonas americana GN=NAD9 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 27/34 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
           ++VRYDDE+KRVV E LE+ QEFR F   +PWEQ
Sbjct: 159 VEVRYDDEQKRVVTESLEMTQEFRSFNFTSPWEQ 192

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Reclinomonas americana (taxid: 48483)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P34944|NDUS3_MARPO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Marchantia polymorpha GN=NAD9 PE=3 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQ 46
           ++VRYDD +KRVV EP+E+ QEFR F   +PWEQ
Sbjct: 152 VEVRYDDSEKRVVSEPIEMTQEFRYFDFASPWEQ 185

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Marchantia polymorpha (taxid: 3197)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|A8I3Y9|NUOC_AZOC5 NADH-quinone oxidoreductase subunit C OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoC PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 26/33 (78%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWE 45
           ++VRYDDE KRVV EP+ LAQEFR F   +PWE
Sbjct: 154 VEVRYDDELKRVVYEPVRLAQEFRNFDFLSPWE 186

NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
91079210	257	PREDICTED: similar to AGAP006456-PA [Tri	0.739	0.210	0.75	7e-16
288856261	264	NADH dehydrogenase [ubiquinone] iron-sul	0.739	0.204	0.678	2e-14
170055789	491	NADH dehydrogenase iron-sulfur protein 3	0.767	0.114	0.672	9e-13
332373832	259	unknown [Dendroctonus ponderosae]	0.753	0.212	0.684	1e-12
389613615	265	NADH ubiquinone oxidoreductase 30 kDa [P	0.602	0.166	0.75	1e-12
48099278	261	PREDICTED: NADH dehydrogenase [ubiquinon	0.671	0.187	0.734	1e-12
324514811	260	NADH dehydrogenase ubiquinone iron-sulfu	0.780	0.219	0.649	2e-12
380030139	255	PREDICTED: NADH dehydrogenase [ubiquinon	0.684	0.196	0.7	3e-12
193657123	255	PREDICTED: NADH dehydrogenase [ubiquinon	0.657	0.188	0.7	3e-12
195376229	267	GJ12236 [Drosophila virilis] gi|19415405	0.616	0.168	0.755	3e-12

>gi|91079210|ref|XP_966588.1| PREDICTED: similar to AGAP006456-PA [Tribolium castaneum] gi|270004834|gb|EFA01282.1| hypothetical protein TcasGA2_TC002817 [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 50/56 (89%), Gaps = 2/56 (3%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKK 68
           ++VRYDDEKKRVVVEPLELAQEFRKF+L  PWEQFPNFRN P +  +EE+P++EKK
Sbjct: 204 VEVRYDDEKKRVVVEPLELAQEFRKFELSAPWEQFPNFRNAPPT--AEEVPVEEKK 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288856261|ref|NP_001165786.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial [Nasonia vitripennis]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 47/56 (83%), Gaps = 2/56 (3%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKK 68
           ++VRYDDEKKRVV EPLELAQE+RKF+L  PWEQFPNFRN   S+ +E++P+ E K
Sbjct: 211 IEVRYDDEKKRVVAEPLELAQEYRKFELSAPWEQFPNFRN--ASNSAEDVPIKENK 264

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|170055789|ref|XP_001863738.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex quinquefasciatus] gi|167875613|gb|EDS38996.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex quinquefasciatus]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 46/61 (75%), Gaps = 5/61 (8%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEEK 72
           +++RYDDEKKRVV EPLELAQEFRKF L  PWEQFPNFRN   +  +EEI     K EEK
Sbjct: 436 VELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRN--ANPATEEI---ATKPEEK 490

Query: 73  K 73
           K
Sbjct: 491 K 491

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373832|gb|AEE62057.1| unknown [Dendroctonus ponderosae]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 46/57 (80%), Gaps = 2/57 (3%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKE 69
           ++VRYDDEKKRVVVEPLELAQEFRKF+L  PWEQFP FR       +EEIP D+K++
Sbjct: 205 VEVRYDDEKKRVVVEPLELAQEFRKFELSAPWEQFPKFRK--ALPVAEEIPADKKEQ 259

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389613615|dbj|BAM20138.1| NADH ubiquinone oxidoreductase 30 kDa [Papilio xuthus]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 39/44 (88%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
           ++VRYDDE+KRVVVEPLELAQEFR+F+L  PWEQFPNFR  P +
Sbjct: 209 VEVRYDDEQKRVVVEPLELAQEFRRFELSAPWEQFPNFRGNPAA 252

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48099278|ref|XP_394885.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial [Apis mellifera]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 41/49 (83%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEE 61
           ++VRYDDE KRVV EPLELAQEFRKF+L  PWEQFPNFR+ P S  S+E
Sbjct: 206 VEVRYDDELKRVVCEPLELAQEFRKFELSAPWEQFPNFRSIPPSDESKE 254

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|324514811|gb|ADY45996.1| NADH dehydrogenase ubiquinone iron-sulfur protein 3 [Ascaris suum]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 42/57 (73%)

Query: 15  VRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIPLDEKKEEE 71
           VRYD E KR+V EP ELAQEFRKF LETPWE FP FRN   +SG EEI L++ + E 
Sbjct: 198 VRYDPELKRIVYEPTELAQEFRKFDLETPWETFPAFRNAAMTSGYEEISLNKPEAES 254

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|380030139|ref|XP_003698713.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial-like [Apis florea]

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 42/50 (84%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEI 62
           ++VRYDDE KRVV EPLELAQEFRKF+L  PWEQFPNFR+ P S  +++I
Sbjct: 206 VEVRYDDELKRVVCEPLELAQEFRKFELSAPWEQFPNFRSIPPSDENKKI 255

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|193657123|ref|XP_001952447.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial-like [Acyrthosiphon pisum]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%), Gaps = 2/50 (4%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEI 62
           ++VRYDDEKKRVVVEPLE++QEFR+F+L TPWEQFPNFR+   S  +EE+
Sbjct: 200 VEVRYDDEKKRVVVEPLEMSQEFRRFELSTPWEQFPNFRS--ASPTTEEV 247

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|195376229|ref|XP_002046899.1| GJ12236 [Drosophila virilis] gi|194154057|gb|EDW69241.1| GJ12236 [Drosophila virilis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 13  LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSS 57
           +++RYDDEKKRVV EPLELAQEFRKF L  PWEQFPNFRN   +S
Sbjct: 209 VELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNANPAS 253

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0035404	265	CG12079 [Drosophila melanogast	0.671	0.184	0.686	2.3e-14
MGI|MGI:1915599	263	Ndufs3 "NADH dehydrogenase (ub	0.630	0.174	0.659	6.5e-12
UNIPROTKB|F1MS25	242	NDUFS3 "NADH dehydrogenase [ub	0.602	0.181	0.659	8.2e-12
WB|WBGene00020417	445	nuo-2 [Caenorhabditis elegans	0.671	0.110	0.693	9.7e-12
RGD|1309406	264	Ndufs3 "NADH dehydrogenase (ub	0.602	0.166	0.666	1.2e-11
UNIPROTKB|P23709	266	NDUFS3 "NADH dehydrogenase [ub	0.602	0.165	0.659	1.2e-11
UNIPROTKB|F1P9Y3	266	NDUFS3 "Uncharacterized protei	0.602	0.165	0.659	1.2e-11
UNIPROTKB|Q0MQG6	263	NDUFS3 "NADH dehydrogenase [ub	0.602	0.167	0.659	1.5e-11
UNIPROTKB|Q0MQG7	263	NDUFS3 "NADH dehydrogenase [ub	0.602	0.167	0.659	1.5e-11
UNIPROTKB|O75489	264	NDUFS3 "NADH dehydrogenase [ub	0.602	0.166	0.659	1.5e-11

FB|FBgn0035404 CG12079 [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 35/51 (68%), Positives = 41/51 (80%)

Query:    13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEIP 63
             +++RYDDEKKRVV EPLELAQEFRKF L  PWEQFPNFRN   +  +E +P
Sbjct:   210 VELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNA--NPPAEVVP 258

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1915599 Ndufs3 "NADH dehydrogenase (ubiquinone) Fe-S protein 3" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 6.5e-12, P = 6.5e-12
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query:    11 TG-LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
             TG +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct:   204 TGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 250

GO:0003954 "NADH dehydrogenase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070469 "respiratory chain" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|F1MS25 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query:    13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
             +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct:   186 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 229

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

WB|WBGene00020417 nuo-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 167 (63.8 bits), Expect = 9.7e-12, P = 9.7e-12
 Identities = 34/49 (69%), Positives = 36/49 (73%)

Query:    14 KVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGSSGSEEI 62
             +VRYD E KRVV EP ELAQEFRKF L TPWE FP FRN   +SG E I
Sbjct:   383 EVRYDPELKRVVYEPSELAQEFRKFDLNTPWETFPAFRNQSITSGYETI 431

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

RGD|1309406 Ndufs3 "NADH dehydrogenase (ubiquinone) Fe-S protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:    11 TG-LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTP 54
             TG +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P
Sbjct:   205 TGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPP 249

GO:0003674 "molecular_function" evidence=ND

GO:0003954 "NADH dehydrogenase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

UNIPROTKB|P23709 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query:    13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
             +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct:   210 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 253

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|F1P9Y3 NDUFS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query:    13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
             +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct:   210 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPES 253

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|Q0MQG6 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Pongo pygmaeus (taxid:9600)]

 Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query:    13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
             +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct:   207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 250

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|Q0MQG7 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query:    13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
             +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct:   207 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 250

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|O75489 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query:    13 LKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNFRNTPGS 56
             +++RYDDE KRVV EP+ELAQEFRKF L +PWE FP +R  P S
Sbjct:   208 VELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPVYRQPPES 251

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0009055 "electron carrier activity" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0003954 "NADH dehydrogenase activity" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5VPY5	NUOC_BRUO2	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
B5ZYL4	NUOC_RHILW	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.165	yes	N/A
B2S545	NUOC_BRUA1	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
A7IPA5	NUOC_XANP2	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.1578	yes	N/A
Q0MQG8	NDUS3_PANTR	1, ., 6, ., 9, 9, ., 3	0.6590	0.6027	0.1666	yes	N/A
Q2K9T3	NUOC_RHIEC	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.165	yes	N/A
A6X1N2	NUOC_OCHA4	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
O75489	NDUS3_HUMAN	1, ., 6, ., 9, 9, ., 3	0.6590	0.6027	0.1666	yes	N/A
C0RIE1	NUOC_BRUMB	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
Q98KQ7	NUOC_RHILO	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.1641	yes	N/A
A7HY47	NUOC_PARL1	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.165	yes	N/A
B9JVE7	NUOC_AGRVS	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.165	yes	N/A
Q2W3I6	NUOC_MAGSA	1, ., 6, ., 9, 9, ., 5	0.5757	0.4520	0.1658	yes	N/A
B0CLD1	NUOC_BRUSI	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
Q9DCT2	NDUS3_MOUSE	1, ., 6, ., 9, 9, ., 3	0.6590	0.6027	0.1673	yes	N/A
Q2YNC7	NUOC_BRUA2	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
B3Q7N4	NUOC_RHOPT	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1617	yes	N/A
Q28T74	NUOC_JANSC	1, ., 6, ., 9, 9, ., 5	0.6129	0.4246	0.1497	yes	N/A
Q95748	NDUS3_ARATH	1, ., 6, ., 9, 9, ., 3	0.6176	0.4657	0.1789	yes	N/A
Q2RU38	NUOC_RHORT	1, ., 6, ., 9, 9, ., 5	0.6111	0.4794	0.1643	yes	N/A
B3PVZ9	NUOC1_RHIE6	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.165	yes	N/A
Q57DU9	NUOC_BRUAB	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
O68854	NUOC1_RHIME	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.1641	yes	N/A
B9JD44	NUOC_AGRRK	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.165	yes	N/A
Q215I2	NUOC_RHOPB	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.1658	yes	N/A
Q35322	NDUS3_ORYSJ	1, ., 6, ., 9, 9, ., 3	0.6176	0.4657	0.1789	yes	N/A
A9CJB1	NUOC_AGRT5	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.165	yes	N/A
A9MAI1	NUOC_BRUC2	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
Q8YGK2	NUOC_BRUME	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
P23709	NDUS3_BOVIN	1, ., 6, ., 9, 9, ., 3	0.6590	0.6027	0.1654	yes	N/A
Q1MIL3	NUOC_RHIL3	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.165	yes	N/A
A8I3Y9	NUOC_AZOC5	1, ., 6, ., 9, 9, ., 5	0.6666	0.4520	0.1563	yes	N/A
Q8G1B5	NUOC_BRUSU	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1633	yes	N/A
A6U7W5	NUOC_SINMW	1, ., 6, ., 9, 9, ., 5	0.6363	0.4520	0.1641	yes	N/A
A8LIT7	NUOC_DINSH	1, ., 6, ., 9, 9, ., 5	0.6451	0.4246	0.1441	yes	N/A
Q6N5M4	NUOC_RHOPA	1, ., 6, ., 9, 9, ., 5	0.6060	0.4520	0.1617	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
KOG1713|consensus	191		99.84
PRK06074	189	NADH dehydrogenase subunit C; Provisional	97.76
COG0852	176	NuoC NADH:ubiquinone oxidoreductase 27 kD subunit	97.47

>KOG1713|consensus

Probab=99.84  E-value=4.3e-22  Score=145.62  Aligned_cols=44  Identities=68%  Similarity=1.156  Sum_probs=42.9

Q ss_pred             cccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcccCCCC
Q psy15773          7 QDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF   50 (73)
Q Consensus         7 FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~~~~~   50 (73)
                      ||||||+|||||++.||||+|||||+||||+||++||||++|.|
T Consensus       148 yplsgy~Evryd~~~krvv~ep~elaqefr~fd~~spwe~~~~~  191 (191)
T KOG1713|consen  148 YPLSGYVEVRYDDEEKRVVSEPIELAQEFRKFDLNSPWEQFPDF  191 (191)
T ss_pred             CCCCCceEEeccchhceeecChHHHHHHHhhcccCCchhhcCCC
Confidence            89999999999999999999999999999999999999999875

>PRK06074 NADH dehydrogenase subunit C; Provisional

Probab=97.76  E-value=1.9e-05  Score=56.37  Aligned_cols=34  Identities=53%  Similarity=0.855  Sum_probs=31.0

Q ss_pred             cccCceeEEEEcCCCCcEEeccccchHhhhccccCCCcccCCCC
Q psy15773          7 QDLYTGLKVRYDDEKKRVVVEPLELAQEFRKFQLETPWEQFPNF   50 (73)
Q Consensus         7 FPLtGyvEvRYDd~~KRVVyEPVeLsQefR~Fdf~SPWe~~~~~   50 (73)
                      |||+||+++.||+..++||+.||+++          ||++-|.-
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  180 (189)
T PRK06074        147 FPLTGYVEVRYDDEQKRVVYEPVTLS----------PWEGTPYV  180 (189)
T ss_pred             CCCCCceEEEccchhCeEEEeecccC----------cccCCCcc
Confidence            89999999999999999999999966          99987643

>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]

Probab=97.47  E-value=3.6e-05  Score=55.23  Aligned_cols=30  Identities=50%  Similarity=0.646  Sum_probs=28.4

Q ss_pred             cccCceeEEEEcCCCCcEEeccccchHhhh
Q psy15773          7 QDLYTGLKVRYDDEKKRVVVEPLELAQEFR   36 (73)
Q Consensus         7 FPLtGyvEvRYDd~~KRVVyEPVeLsQefR   36 (73)
                      |||+||++++||.+.++++|+|+++.+++|
T Consensus       147 fpl~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (176)
T COG0852         147 FPLRGYVEVRYDEEDKKVVYEPVELIFERR  176 (176)
T ss_pred             cCCCccEEeccchhhcccccccccccccCC
Confidence            899999999999999999999999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
3i9v_5	207	NADH-quinone oxidoreductase subunit 5; electron tr	3e-06

>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5* Length = 207

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 6/57 (10%)

Query: 5   PVQDLYTGLK-VRYDDEKKRVVV-----EPLELAQEFRKFQLETPWEQFPNFRNTPG 55
           P+ +  T  +  RY    +           L   +   +    + W      R   G
Sbjct: 151 PLGETPTLFREGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRSLWADLKKAREVKG 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00