Psyllid ID: psy15808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGDDEDSDTSASFLDFTDNTKNDAATIVSASSR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEHcHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHcHHHcccEccccccccccEEEcccccccccccccccccccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
MARRFFRRELGILLLLYQVLSVgfhlippgtLTLILIQTLLYIMNVLaqpwdslgicisahtilnQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKtirtrqspdvthqllnfsvpavyapWIELVIIHLmvpnasfkghLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNvfkldddcngddedsdtsasfldftdntkndAATIVSASSR
Flexible Loop (DISEMBL)
MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRlversgrsvsrVVNTLTnvfkldddcngdDEDSDTsasfldftdntkndAATIVSASSR
Low Complexity Region (SEG)
MARRFFRRELGILLLLYQVLSVGFHlippgtltliliqtllYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVErsgrsvsrvvNTLTNVFKLdddcngddedsdTSASFLDFTDNTKNDAATIVSASSR
Disordered region (IsUnstruct)
****FFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKL*************************************
Disordered Region (DISOPRED)
************LLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDD***********************************
Disordered Region (DISEMBL)
MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDC*********SASFLDFTDNTKNDAATIVSASSR
Disordered Region (DISPRO)
*******RELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGDDEDSDTSASFLDFTDNTKNDAATIVSAS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGDDEDSDTSASFLDFTDNTKNDAATIVSASSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q8BHC7	315	Rhomboid-related protein	yes	N/A	0.778	0.679	0.4	1e-40
Q4V8F3	316	Rhomboid-related protein	yes	N/A	0.778	0.677	0.386	6e-39
Q8TEB9	315	Rhomboid-related protein	yes	N/A	0.916	0.8	0.343	1e-38
Q5RBS4	318	Rhomboid-related protein	yes	N/A	0.781	0.676	0.383	5e-37
Q8RXW0	334	Uncharacterized protein A	yes	N/A	0.785	0.646	0.354	3e-26
Q8LB17	403	Uncharacterized protein A	no	N/A	0.665	0.454	0.314	2e-19
Q6CDV6	297	Rhomboid protein 2 OS=Yar	yes	N/A	0.614	0.569	0.283	6e-10
Q12270	262	Rhomboid protein 2 OS=Sac	yes	N/A	0.734	0.770	0.240	1e-07
O74926	251	Rhomboid protein 2 OS=Sch	yes	N/A	0.694	0.760	0.235	2e-07
Q6CR06	271	Rhomboid protein 2 OS=Klu	yes	N/A	0.56	0.568	0.262	5e-06

>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 6/220 (2%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSL-GICIS 59
           M RR      G+LLLL QV  +G + IPP TL  + +    ++      PW  L   CIS
Sbjct: 1   MQRRTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFL-----NPWKPLYHSCIS 55

Query: 60  AHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIST 119
                 Q+D++RL+LS L HGDD HLY+NMVS++ KG +LER  GS  F  +++   + T
Sbjct: 56  VEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLT 115

Query: 120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
            V Y++L + +  + +       CA+GFS VLF++K +     P     +L F VP  +A
Sbjct: 116 GVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFA 175

Query: 180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
            W ELV IH   P  SF GHL+GILVGL YT+  L ++++
Sbjct: 176 CWAELVAIHFCTPGTSFAGHLAGILVGLMYTQGPLKKIMD 215

Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1

 Score =  160 bits (406), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 123/220 (55%), Gaps = 6/220 (2%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSL-GICIS 59
           M RR    + G+LLLL QV  +G + IPP TL  + +    ++      PW  L   CIS
Sbjct: 1   MQRRTRGIDTGLLLLLSQVFHIGINNIPPVTLATLAVNVWFFL-----NPWKPLYHSCIS 55

Query: 60  AHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIST 119
                 Q D++RL+LS + HGDD HLY+NMVS++ KG +LE+  GS  F  +++   + T
Sbjct: 56  VEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLT 115

Query: 120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
            V Y++L +    + +       CA+GFS VLF++K +     P     +L F VP  +A
Sbjct: 116 GVVYLLLQFASAELMNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFA 175

Query: 180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
            W EL  IH   P  SF GHL+GILVGL YT+  L ++++
Sbjct: 176 CWAELAAIHFCTPGTSFAGHLAGILVGLMYTQGPLKKIMD 215

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 13/265 (4%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
           M RR      G++LLL Q+  VG + IPP TL  + +  + + +N     + S   C+S 
Sbjct: 1   MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLAL-NIWFFLNPQKPLYSS---CLSV 56

Query: 61  HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
                Q+D++RL+LS L H DD HLY+NM S++ KG  LER  GS  F  +++   + T 
Sbjct: 57  EKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTG 116

Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
           V Y++L + +     +      CA+GFS VLF++K +     P     +L F VP  +A 
Sbjct: 117 VVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFAC 176

Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDD 240
           W+ELV IHL  P  SF GHL+GILVGL YT+  L +++E      S  V      +    
Sbjct: 177 WVELVAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIMEACAGGFSSSVGYPGRQYYF-- 234

Query: 241 DCNGDDEDSDTSASFLDFTDNTKND 265
                  +S  S+ + D+  + + D
Sbjct: 235 -------NSSGSSGYQDYYPHGRPD 252

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1

 Score =  154 bits (390), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 122/219 (55%), Gaps = 4/219 (1%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
           M RR      G++LLL Q+  VG + IPP TL  + +  + + +N     + S   C+S 
Sbjct: 1   MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLAL-NIWFFLNPQKPLYSS---CLSV 56

Query: 61  HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
                QRD++RL+LS L H DD HLY+N  S++ KG  LER  GS  F  +++   + T 
Sbjct: 57  EKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLERRLGSRWFAYVITTFSVLTG 116

Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
           V Y++L + +     +      CA+GFS VLF++K +     P     +L F VP  +A 
Sbjct: 117 VVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFAC 176

Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
           W+ELV IHL  P  SF GH +GILVGL YT+  L +++E
Sbjct: 177 WVELVAIHLFSPGTSFAGHQAGILVGLMYTQGPLKKIME 215

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 124/240 (51%), Gaps = 24/240 (10%)

Query: 7   RRELGILLLLYQVLSVGFH----LIPPGTLTLILIQTLLYIMNVLAQP--------WDSL 54
           RR  G +L L  + +V  +      PP T +L+   TL+Y+      P        W   
Sbjct: 8   RRSGGGMLPLLALSAVAEYYRLPWKPPVTASLLAANTLVYLRPAFIDPVIPHISEVW--- 64

Query: 55  GICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSF 114
               + H I   +D KRL LSA  H ++ HL YNM+SL+ KG +LE   GS +F  +V  
Sbjct: 65  ---FNPHLIFKHKDLKRLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMGSSEFASMVFT 121

Query: 115 LI-ISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFS 173
           LI +S  V  ++   ++ L ++D     + A+GFS VLF+MK +   Q+ D +  +    
Sbjct: 122 LIGMSQGVTLLLAKSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLNSQAEDYS-SVYGIL 180

Query: 174 VPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTE----TSLGRLVERSGRSVSRVV 229
           VP  YA W EL+++ + VPNASF GHL GIL G+ Y +     S    V  + R VSR+V
Sbjct: 181 VPTKYAAWAELILVQMFVPNASFLGHLGGILAGIIYLKLKGSYSGSDPVTMAVRGVSRLV 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 109/194 (56%), Gaps = 11/194 (5%)

Query: 24  FHLIPPGTLTLILIQTLLYIMNVLAQPWDSL-GICISAHTILNQRDYKRLVLSALEHGDD 82
           ++ IP  T +++++  ++Y++ +L   +D+   +C     I+++    R   + + HG  
Sbjct: 19  WNAIPFLTSSVVVVCGVIYLICLLTG-YDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSL 77

Query: 83  MHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYV-----IYLMNHDV 137
           +H+ +NM++L+  G ELER+ GSV+ + L   L  + +V +++++ +      Y  +H +
Sbjct: 78  LHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFYQYDHLM 137

Query: 138 TELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYAPWIELVIIHLMVPNASF 196
            E   CAIGFS +LFSM  I T  S   +  +   F+VPA   PWI L++  L++ N S 
Sbjct: 138 NE---CAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSL 194

Query: 197 KGHLSGILVGLCYT 210
            GHL GIL G  Y+
Sbjct: 195 LGHLCGILSGFSYS 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RBD2 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 11/180 (6%)

Query: 62  TILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSV 121
           T L   +  R+    L H    HL  N+V+L     + ER+ G+V+  ++++ L + T++
Sbjct: 50  TALTNFELNRISFYPLVHATWFHLLLNLVALQPIVSQFERVNGTVRTGIVLNILAVVTAI 109

Query: 122 CYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMK---TIRTRQSPDVTHQLLNFSVPAVY 178
            + +LS   +    D     +  +G SA +FS      IR       T    N  VP   
Sbjct: 110 PWCLLSIGFF---PD-----EAVLGSSAWIFSFMGYWAIRESSKQPTTQLAPNLVVPTWL 161

Query: 179 APWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKL 238
            P I LV+I +++P++SF GHL G++ G       L  L+E S + V  + N ++ V  L
Sbjct: 162 LPIIYLVVIAIVIPSSSFIGHLLGLIAGWMMALGYLDVLIEPSSKVVLWIENKISRVIDL 221

Probable serine protease.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBD2 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 14/216 (6%)

Query: 28  PPGTLT--LILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHL 85
           PP  LT  L++  T +Y+++ +    + L +   A   L +    RL L  L H    HL
Sbjct: 13  PPAALTTGLVVFLTAIYLLSFIFALREDLSL---APESLFKLQMSRLSLYPLIHLSLPHL 69

Query: 86  YYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAI 145
            +N++++       E   G+V   V ++   +   + Y +L  ++Y        L   A 
Sbjct: 70  LFNVLAIWAPLNLFEETHGTVYTGVFLNLSALFAGILYCLLGKLLY-----PEALVAGAS 124

Query: 146 GFSAVLFSMKTIRTRQ-SPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGIL 204
           G+   LF+  + +  Q  P       ++S+P +Y P + LV I +++P +SF GH  G+ 
Sbjct: 125 GWCFTLFAYYSFKESQIRPRTRIFRTDYSIPTLYTPLVLLVAIAVVIPGSSFWGHFFGLC 184

Query: 205 VG--LCYTETSLGRLVERSGRSVSRVVNTLTNVFKL 238
           VG  + Y E+   + +   G  ++++  +L  + +L
Sbjct: 185 VGYAIGYKESWFNK-ITPPGWIITKIEKSLDGLIRL 219

Probable serine protease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rbd2 PE=3 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 63  ILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVC 122
           +L +R    ++     H   +H+ +N VSL+    + E+  G++         I+ T + 
Sbjct: 50  LLQKRQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLA-------CILVTVIP 102

Query: 123 YVMLSYVIYLMNHD--VTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYA 179
           Y +   +++L+ +   + + Y    G S   F+  +     SP       N FS+PA   
Sbjct: 103 YTLFPGIMHLIVYHFFLRKDYVSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCF 162

Query: 180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERS-GRSVSRVVNT-LTNVFK 237
           P I L++  ++VP ASF GH SG ++G C T   LG +  +S  ++V  +  + + N   
Sbjct: 163 PIIYLIMTTILVPKASFIGHASGAVMGYC-TPFMLGSIPLKSWAQNVDPIFQSWVKNYHS 221

Query: 238 LDDDCNGDDEDSDTSASFLDFTDN 261
            D   +     ++  ++F  F   
Sbjct: 222 FDQLSHAQLPIAEPLSTFSSFPGK 245

Probable serine protease.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q6CR06|RBD2_KLULA Rhomboid protein 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RBD2 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 21/175 (12%)

Query: 39  TLLYIMNVLAQPWDSLGICISAHTILN-----QRDYKRLVLSALEHGDDMHLYYNMVSLI 93
           T L+++N L  P       I+ H +L      + D  R+ L  L H    HL++N++S  
Sbjct: 26  TALFLVNNLVYP-------INEHLLLKPDSLFKFDLNRISLYPLAHLSFFHLFFNVISTF 78

Query: 94  VKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVL-- 151
                 E   G++   V+++ L + T++ Y ++  +++       E+   +  F + L  
Sbjct: 79  SMIVMFEESHGTLYTGVILNLLAVFTAIPYCLIGSLLF----PNVEIGGASGWFFSFLGY 134

Query: 152 FSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVG 206
           F++K  R R S  +T     FS P +Y P   L +  L+ P +S  GH  G+L+G
Sbjct: 135 FAVKESRVRNSVMITS---TFSFPTLYFPVALLFVTALLAPGSSLPGHAIGLLLG 186

Probable serine protease.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
242015304	287	conserved hypothetical protein [Pediculu	0.767	0.735	0.457	6e-52
242006593	236	conserved hypothetical protein [Pediculu	0.756	0.881	0.458	3e-48
321459244	312	hypothetical protein DAPPUDRAFT_300486 [	0.774	0.682	0.462	8e-48
383847955	247	PREDICTED: rhomboid domain-containing pr	0.792	0.882	0.452	1e-46
322802448	247	hypothetical protein SINV_10941 [Solenop	0.785	0.874	0.447	8e-46
380024431	247	PREDICTED: rhomboid domain-containing pr	0.785	0.874	0.442	2e-44
340725934	247	PREDICTED: rhomboid domain-containing pr	0.792	0.882	0.438	3e-44
197304727	246	rhomboid domain containing 1 [Nasonia vi	0.785	0.878	0.437	6e-44
328779994	247	PREDICTED: rhomboid domain-containing pr	0.785	0.874	0.442	6e-44
307213224	247	Rhomboid domain-containing protein 1 [Ha	0.785	0.874	0.433	7e-44

>gi|242015304|ref|XP_002428304.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212512889|gb|EEB15566.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 147/212 (69%), Gaps = 1/212 (0%)

Query: 9   ELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRD 68
           ELG++LL  ++L  G   IPP TL  IL QTLLY M ++  PW+   +CIS ++I+N +D
Sbjct: 11  ELGLILLFNELLIFGMKNIPPVTLGAILGQTLLY-MGIINVPWEKEEVCISGNSIINDKD 69

Query: 69  YKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSY 128
           +KRL LSA+EHGDDMHLY+NM S ++KGR LE  +GS  F ++++FL I TS+ YV+L++
Sbjct: 70  WKRLFLSAVEHGDDMHLYFNMASFLIKGRSLEARYGSKNFAIILTFLTIVTSLMYVILAF 129

Query: 129 VIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIH 188
           ++  +    + +  CAIGFS V+F++K + T + P +   LL   +P  YA W+EL+IIH
Sbjct: 130 IMSNVMEATSYMDSCAIGFSGVIFALKVLTTHEEPYIRAMLLGVDIPGKYAAWVELIIIH 189

Query: 189 LMVPNASFKGHLSGILVGLCYTETSLGRLVER 220
           ++VPN+SF GH +GIL G+ Y ++ +G  ++ 
Sbjct: 190 MLVPNSSFMGHFAGILSGVIYCKSFIGLFLDN 221

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006593|ref|XP_002424134.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507451|gb|EEB11396.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 141/216 (65%), Gaps = 8/216 (3%)

Query: 23  GFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDD 82
           G   IPP TL  I+ QTLLY M  +  PWD   +C+S + IL  +D+KRL LSALEHGDD
Sbjct: 25  GMKNIPPITLGSIVGQTLLY-MGFINVPWDKEDVCLSGNGILKLKDWKRLFLSALEHGDD 83

Query: 83  MHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQ 142
           MHLYYNM S ++KGR LE+ +GS  F +++ FL I TS  YV+L+  +  +  + + +  
Sbjct: 84  MHLYYNMASFLIKGRSLEKRYGSKCFAIILIFLTILTSGIYVLLAQAMSEVFENDSYMKS 143

Query: 143 CAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSG 202
           CAIGFS V+F++K + T + P +   L+   +P  YA WIEL++IHL+VPN+SF GHL+G
Sbjct: 144 CAIGFSGVIFALKVLTTHEEPSLRATLVGVQIPGKYAAWIELILIHLLVPNSSFMGHLAG 203

Query: 203 ILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKL 238
           IL G+ Y  T  G ++++S       ++ LT  FK+
Sbjct: 204 ILAGVIYCNTIFGNVLDKS-------ISFLTGNFKV 232

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459244|gb|EFX70299.1| hypothetical protein DAPPUDRAFT_300486 [Daphnia pulex]

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 136/214 (63%), Gaps = 1/214 (0%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
           MAR+    E+G+LLL++Q+L+ G    PP T+ ++  Q  L+ M ++   WD+ G+C+SA
Sbjct: 1   MARQRRGIEMGVLLLMWQLLNTGLETFPPVTILVVAGQVCLF-MGLIPVSWDAGGVCLSA 59

Query: 61  HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
             +L  R+Y+RLVLSALEH DD+HLYYNM+S + KGR LER FGS  F  L+S   + TS
Sbjct: 60  QAVLKWREYERLVLSALEHADDLHLYYNMLSFLSKGRSLERHFGSPYFAYLLSVFTVLTS 119

Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
           V YV L  ++  + HD      CAIGFS V+F++K + T        +     V   YA 
Sbjct: 120 VTYVGLEVLLSELLHDKQHYKTCAIGFSGVIFALKVLTTSYWESGYRRYFGIRVSGKYAV 179

Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSL 214
           W+EL+ I LMVPN SF GHL+GILVG+ YT+  L
Sbjct: 180 WVELIAIQLMVPNTSFVGHLAGILVGVAYTQGPL 213

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847955|ref|XP_003699618.1| PREDICTED: rhomboid domain-containing protein 1-like [Megachile rotundata]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/219 (45%), Positives = 136/219 (62%), Gaps = 1/219 (0%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
           + RR    + GI LL  Q ++ G   IPP TLT I++Q LLYI  ++  PW++  +CIS 
Sbjct: 4   IQRRQQGLQYGIYLLCLQAINFGIDKIPPATLTSIILQVLLYI-GLIKVPWNAEEVCIST 62

Query: 61  HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
             I   RD+K  ++S  EHG DMHLYYNMVSLI+KG  LE M+G++ FV+L++ L    S
Sbjct: 63  IKIFKYRDWKSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTMNFVILLAVLSFGCS 122

Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
             Y  L Y +  +  D     QCAIGFSAVLF++K I   +  D  H +    VP+  A 
Sbjct: 123 AMYTSLGYALMQLTGDYGYYTQCAIGFSAVLFALKVIVVCEEQDRIHDVGGLRVPSKIAV 182

Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
           W+EL++IHL+VP +SF GHL GILVG  Y  T +G +++
Sbjct: 183 WVELILIHLLVPQSSFVGHLGGILVGCLYCYTFVGEMID 221

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802448|gb|EFZ22798.1| hypothetical protein SINV_10941 [Solenopsis invicta]

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 135/217 (62%), Gaps = 1/217 (0%)

Query: 3   RRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHT 62
           RR    E GI +L  QVL+ G   IPP TL  ++ QTLLY   ++  PW++  +CISA  
Sbjct: 6   RRQQGLETGIFMLCMQVLNFGLDKIPPATLIGVIAQTLLY-AGLIRVPWNAEEVCISAVK 64

Query: 63  ILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVC 122
           I+  +D++   LS  EHG DMHLYYNM+S I+KG  LE ++G+  FV+L++ L    SV 
Sbjct: 65  IIKYKDWRSFFLSNFEHGSDMHLYYNMISFILKGSYLEPLYGTTNFVLLLAILSFGCSVM 124

Query: 123 YVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWI 182
           YV L Y++  +  D      CAIGFSA LF++K +   +  D  H +  F VP+  A W 
Sbjct: 125 YVSLGYILMQLTGDYGYFTACAIGFSATLFALKVVALCEERDKLHNISGFIVPSKLAVWF 184

Query: 183 ELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
           EL++IHL+VPN+SF GHL GILVG  Y+ T +G  ++
Sbjct: 185 ELILIHLLVPNSSFIGHLGGILVGCLYSYTFIGETLD 221

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024431|ref|XP_003695999.1| PREDICTED: rhomboid domain-containing protein 1-like [Apis florea]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 132/217 (60%), Gaps = 1/217 (0%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
           + RR    + GI LL  Q L+ G   IPP TL  I+ Q LLYI   +  PW++  +CISA
Sbjct: 4   IQRRQHGLQYGIYLLYIQALNFGIDKIPPATLLTIIAQVLLYI-GFIKVPWNAEEVCISA 62

Query: 61  HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
             I    D+   ++S  EHG DMHLYYNMVSLI+KG  LE M+ ++ F++L++ L    S
Sbjct: 63  IKIFKYHDWNSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYKTMNFIILLTILSFGCS 122

Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
             Y+ LSYV+  +  D     QCAIGFSA+LF++K I   +  D  H +    VP+  A 
Sbjct: 123 TMYIGLSYVLMQLTGDYGYYVQCAIGFSAILFALKVIVICEEYDKIHDIGGLRVPSKIAV 182

Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRL 217
           W+EL++IHL+VP +SF GHL GIL+G  Y  T +G +
Sbjct: 183 WVELILIHLLVPQSSFIGHLGGILIGCLYCYTFIGEM 219

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725934|ref|XP_003401319.1| PREDICTED: rhomboid domain-containing protein 1-like [Bombus terrestris]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 133/219 (60%), Gaps = 1/219 (0%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
           + RR    + GI LL  Q L+ G   IPP TL  I+ Q LLY+  ++  PW++  +CISA
Sbjct: 4   IQRRQQGLQYGIYLLCMQALNYGIDKIPPATLITIIAQVLLYV-GLIKVPWNAEEVCISA 62

Query: 61  HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
             +   RD+   ++S  EHG DMHLYYNMVSLI+KG  LE M+G++ FV+L++ L    S
Sbjct: 63  IKVFKYRDWNSFLISNFEHGSDMHLYYNMVSLILKGSYLEPMYGTINFVILLAILSFGCS 122

Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
             Y  L Y +  +  D     QCAIGFSA+LF++K I   +  D    +  F V +  A 
Sbjct: 123 TMYAGLGYALMQLTGDYGYYTQCAIGFSAILFALKVIVVCEEYDRIQDVGGFRVSSKIAV 182

Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
           W+EL++IHL+VP +SF GHL GILVG  Y  T +G +V+
Sbjct: 183 WVELILIHLLVPQSSFIGHLGGILVGCLYCYTFIGEIVD 221

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197304727|ref|NP_001127873.1| rhomboid domain containing 1 [Nasonia vitripennis]

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 132/217 (60%), Gaps = 1/217 (0%)

Query: 3   RRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHT 62
           RR    + G++LL  Q ++ G   IPP TL  + +Q+LLY   ++  PW+   +CIS   
Sbjct: 6   RRQPGLQYGLVLLASQAMNFGIDKIPPATLLGMAVQSLLY-AGMIKVPWNPEDVCISTLK 64

Query: 63  ILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVC 122
           IL  +D++  V+S  EHG DMHLYYNMVS ++KG  LE M+G+  F +L+  L +  S  
Sbjct: 65  ILKHKDWRSFVVSNFEHGSDMHLYYNMVSFLLKGSYLEPMYGTANFALLIGLLSLGCSSM 124

Query: 123 YVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWI 182
           YV L Y +  +  D      CAIGFSAVLF++K I   +  D    +  F VP+ +A W 
Sbjct: 125 YVFLGYALTQITTDYAYYTSCAIGFSAVLFALKVIVVCEEHDRPTDVGGFRVPSKFAVWA 184

Query: 183 ELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
           ELV+IHL+VPN+SF GHL GILVG  Y  T +G +V+
Sbjct: 185 ELVLIHLLVPNSSFIGHLGGILVGCLYCYTFVGEIVD 221

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779994|ref|XP_001122441.2| PREDICTED: rhomboid domain-containing protein 1-like [Apis mellifera]

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 132/217 (60%), Gaps = 1/217 (0%)

Query: 1   MARRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISA 60
           + RR    + GI LL  Q L+ G   IPP TL  I+ Q LLYI   +  PW++  +CISA
Sbjct: 4   IQRRQHGLQYGIYLLYMQALNFGIDKIPPATLLTIIAQVLLYI-GFIKVPWNAEEVCISA 62

Query: 61  HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
             I    D+   ++S  EHG DMHLYYNMVSLI+KG  LE M+ ++ FV+L++ L    S
Sbjct: 63  IKIFKYHDWNSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYKTMNFVILLTILSFGCS 122

Query: 121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
             Y+ LSYV+  +  D     QCAIGFS++LF++K I   +  D  H +    VP+  A 
Sbjct: 123 TMYIGLSYVLMQLTGDYGYYVQCAIGFSSILFALKVIVICEEYDRIHDVGGLRVPSKIAV 182

Query: 181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRL 217
           W+EL++IHL+VP +SF GHL GIL+G  Y  T +G +
Sbjct: 183 WVELILIHLLVPQSSFIGHLGGILIGCLYCYTFIGEM 219

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213224|gb|EFN88719.1| Rhomboid domain-containing protein 1 [Harpegnathos saltator]

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 134/217 (61%), Gaps = 1/217 (0%)

Query: 3   RRFFRRELGILLLLYQVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHT 62
           RR    + GI LL  Q +++G   IPP TL  ++ QTLLYI  ++  PW++  +CISA  
Sbjct: 6   RRQQGLQYGIYLLFTQTINIGIDRIPPATLIGVISQTLLYI-GLIKVPWNAEEVCISAVK 64

Query: 63  ILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVC 122
           I   ++++    S  EHG DMHLYYNM+S I+KG  LE ++G++ FV+L+  L    S  
Sbjct: 65  IFKYKNWRSFFFSNFEHGSDMHLYYNMISFILKGSYLEPIYGTMNFVLLLFILSTGCSAM 124

Query: 123 YVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWI 182
           YV L Y++  +  D      CAIGFSA LF++K I   +  D  H +  F V +  A W+
Sbjct: 125 YVSLGYILMQLTGDYGYYTTCAIGFSATLFALKVIALCEERDRLHNINGFQVQSKLAVWV 184

Query: 183 ELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
           EL++IHL+VPNASF GHL GILVG  Y+ T +G +++
Sbjct: 185 ELILIHLLVPNASFVGHLGGILVGCLYSYTFVGEIID 221

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
UNIPROTKB|E1BT32	239	RHBDD1 "Uncharacterized protei	0.781	0.899	0.365	6.5e-35
MGI|MGI:1924117	315	Rhbdd1 "rhomboid domain contai	0.778	0.679	0.377	1.3e-34
RGD|1306477	316	Rhbdd1 "rhomboid domain contai	0.774	0.674	0.375	2e-33
UNIPROTKB|Q4V8F3	316	Rhbdd1 "Rhomboid-related prote	0.774	0.674	0.375	2e-33
UNIPROTKB|Q8TEB9	315	RHBDD1 "Rhomboid-related prote	0.781	0.682	0.365	3.2e-33
UNIPROTKB|E2R6X6	316	RHBDD1 "Uncharacterized protei	0.778	0.677	0.372	6.7e-33
UNIPROTKB|E2RD89	316	RHBDD1 "Uncharacterized protei	0.778	0.677	0.372	6.7e-33
UNIPROTKB|F1MQC7	322	RHBDD1 "Uncharacterized protei	0.778	0.664	0.377	2.9e-32
UNIPROTKB|Q08DF5	267	RHBDD1 "Rhomboid domain contai	0.778	0.801	0.377	2.9e-32
UNIPROTKB|Q5RBS4	318	RHBDD1 "Rhomboid-related prote	0.781	0.676	0.360	3.7e-32

UNIPROTKB|E1BT32 RHBDD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 80/219 (36%), Positives = 123/219 (56%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSLGICISA 60
             M RR  R   G+LLLLYQ+  VG                  + +N + +P      CIS 
Sbjct:     1 MQRRQGRVNAGLLLLLYQISQVGLQNIPSVTLAVLILNVF-FFLNPM-RPLHEA--CISV 56

Query:    61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
                  +++++RL+LS + H DD HLYYNMVS++ KG  LER  GS+ F  +++   + T 
Sbjct:    57 KEAFYRQNWQRLLLSPVHHVDDWHLYYNMVSMLWKGITLERKLGSMWFAYIIAVFSVLTG 116

Query:   121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
             + YV+L +++  + +D +    CA+GFS VLF++K +    +P     +L   + + YA 
Sbjct:   117 IVYVLLEFMLVKILNDPSYEMSCAVGFSGVLFALKVLNNHYNPGRVSSVLGLQISSKYAC 176

Query:   181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
             W+ELV IH + P  SF GHL+GILVGL YT   L ++++
Sbjct:   177 WVELVAIHFIAPRTSFAGHLAGILVGLMYTMGPLKKIMK 215

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IEA

GO:0034620 "cellular response to unfolded protein" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0051047 "positive regulation of secretion" evidence=IEA

MGI|MGI:1924117 Rhbdd1 "rhomboid domain containing 1" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 83/220 (37%), Positives = 118/220 (53%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSL-GICIS 59
             M RR      G+LLLL QV  +G +                ++      PW  L   CIS
Sbjct:     1 MQRRTRGINTGLLLLLSQVFQIGINNIPPVTLATLAVNVWFFL-----NPWKPLYHSCIS 55

Query:    60 AHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIST 119
                   Q+D++RL+LS L HGDD HLY+NMVS++ KG +LER  GS  F  +++   + T
Sbjct:    56 VEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLERRLGSRWFAYVIATFSLLT 115

Query:   120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
              V Y++L + +  + +       CA+GFS VLF++K +     P     +L F VP  +A
Sbjct:   116 GVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRFA 175

Query:   180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
              W ELV IH   P  SF GHL+GILVGL YT+  L ++++
Sbjct:   176 CWAELVAIHFCTPGTSFAGHLAGILVGLMYTQGPLKKIMD 215

GO:0004175 "endopeptidase activity" evidence=ISO;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IDA

GO:0033619 "membrane protein proteolysis" evidence=ISO;ISS

GO:0034620 "cellular response to unfolded protein" evidence=IDA

GO:0034644 "cellular response to UV" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043687 "post-translational protein modification" evidence=IDA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IDA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO;ISS

GO:0048515 "spermatid differentiation" evidence=IMP

GO:0051047 "positive regulation of secretion" evidence=ISO;ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=IMP

RGD|1306477 Rhbdd1 "rhomboid domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 83/221 (37%), Positives = 118/221 (53%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSL-GICIS 59
             M RR    + G+LLLL QV  +G +                ++      PW  L   CIS
Sbjct:     1 MQRRTRGIDTGLLLLLSQVFHIGINNIPPVTLATLAVNVWFFL-----NPWKPLYHSCIS 55

Query:    60 AHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIST 119
                   Q D++RL+LS + HGDD HLY+NMVS++ KG +LE+  GS  F  +++   + T
Sbjct:    56 VEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLT 115

Query:   120 SVCYVMLSYV-IYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVY 178
              V Y++L +    LMN    +   CA+GFS VLF++K +     P     +L F VP  +
Sbjct:   116 GVVYLLLQFASAELMNQPDFKR-NCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRF 174

Query:   179 APWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
             A W EL  IH   P  SF GHL+GILVGL YT+  L ++++
Sbjct:   175 ACWAELAAIHFCTPGTSFAGHLAGILVGLMYTQGPLKKIMD 215

GO:0004175 "endopeptidase activity" evidence=ISO;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=ISO;ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO;ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISO;ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISO;ISS

GO:0033619 "membrane protein proteolysis" evidence=ISO;ISS

GO:0034620 "cellular response to unfolded protein" evidence=ISO;ISS

GO:0034644 "cellular response to UV" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043687 "post-translational protein modification" evidence=ISO;ISS

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=ISO;ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO;ISS

GO:0048515 "spermatid differentiation" evidence=ISO;ISS

GO:0051047 "positive regulation of secretion" evidence=ISO;ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=ISO;ISS

UNIPROTKB|Q4V8F3 Rhbdd1 "Rhomboid-related protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 83/221 (37%), Positives = 118/221 (53%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSL-GICIS 59
             M RR    + G+LLLL QV  +G +                ++      PW  L   CIS
Sbjct:     1 MQRRTRGIDTGLLLLLSQVFHIGINNIPPVTLATLAVNVWFFL-----NPWKPLYHSCIS 55

Query:    60 AHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIIST 119
                   Q D++RL+LS + HGDD HLY+NMVS++ KG +LE+  GS  F  +++   + T
Sbjct:    56 VEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEKRLGSRWFAYIIATFSLLT 115

Query:   120 SVCYVMLSYV-IYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVY 178
              V Y++L +    LMN    +   CA+GFS VLF++K +     P     +L F VP  +
Sbjct:   116 GVVYLLLQFASAELMNQPDFKR-NCAVGFSGVLFALKVLSNHYCPGGFVNILGFPVPNRF 174

Query:   179 APWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
             A W EL  IH   P  SF GHL+GILVGL YT+  L ++++
Sbjct:   175 ACWAELAAIHFCTPGTSFAGHLAGILVGLMYTQGPLKKIMD 215

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=ISS

UNIPROTKB|Q8TEB9 RHBDD1 "Rhomboid-related protein 4" [Homo sapiens (taxid:9606)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 80/219 (36%), Positives = 116/219 (52%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSLGICISA 60
             M RR      G++LLL Q+  VG +                + +N     + S   C+S 
Sbjct:     1 MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIW-FFLNPQKPLYSS---CLSV 56

Query:    61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
                  Q+D++RL+LS L H DD HLY+NM S++ KG  LER  GS  F  +++   + T 
Sbjct:    57 EKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYVITAFSVLTG 116

Query:   121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
             V Y++L + +     +      CA+GFS VLF++K +     P     +L F VP  +A 
Sbjct:   117 VVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFAC 176

Query:   181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
             W+ELV IHL  P  SF GHL+GILVGL YT+  L +++E
Sbjct:   177 WVELVAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKIME 215

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034644 "cellular response to UV" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS;IMP;IDA

GO:0048515 "spermatid differentiation" evidence=ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP;IDA

GO:0033619 "membrane protein proteolysis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0051047 "positive regulation of secretion" evidence=IMP

GO:0010954 "positive regulation of protein processing" evidence=ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISS

GO:0034620 "cellular response to unfolded protein" evidence=ISS

GO:0043687 "post-translational protein modification" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

UNIPROTKB|E2R6X6 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 82/220 (37%), Positives = 118/220 (53%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSLGICISA 60
             M RR      G++LLL Q+  VG +                + +N L   ++S   C+S 
Sbjct:     1 MQRRSRGINAGLILLLSQIFHVGINNIPPVTLATLALNVW-FFLNPLKPLYES---CLSV 56

Query:    61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFV-VLVSFLIIST 119
                  Q+D++RL+LS L H DD HLY+NM S++ KG  LER  GS  F  ++V+F ++ T
Sbjct:    57 EKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYIIVTFSLL-T 115

Query:   120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
              V Y+ L + +     +      CA+GFS VLF++K +     P     +L F VP  +A
Sbjct:   116 GVVYLFLEFALAEFTDEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANILGFPVPNRFA 175

Query:   180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
              W ELV IH + P  SF GHL+GILVGL YT   L +++E
Sbjct:   176 CWAELVAIHFISPGTSFAGHLAGILVGLMYTHGPLKKIME 215

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|E2RD89 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 82/220 (37%), Positives = 118/220 (53%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSLGICISA 60
             M RR      G++LLL Q+  VG +                + +N L   ++S   C+S 
Sbjct:     1 MQRRSRGINAGLILLLSQIFHVGINNIPPVTLATLALNVW-FFLNPLKPLYES---CLSV 56

Query:    61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFV-VLVSFLIIST 119
                  Q+D++RL+LS L H DD HLY+NM S++ KG  LER  GS  F  ++V+F ++ T
Sbjct:    57 EKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERRLGSRWFAYIIVTFSLL-T 115

Query:   120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
              V Y+ L + +     +      CA+GFS VLF++K +     P     +L F VP  +A
Sbjct:   116 GVVYLFLEFALAEFTDEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANILGFPVPNRFA 175

Query:   180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
              W ELV IH + P  SF GHL+GILVGL YT   L +++E
Sbjct:   176 CWAELVAIHFISPGTSFAGHLAGILVGLMYTHGPLKKIME 215

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0034620 "cellular response to unfolded protein" evidence=IEA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1MQC7 RHBDD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 83/220 (37%), Positives = 121/220 (55%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSLGICISA 60
             M RR     +G+LLLL Q+  VG +                + +N L +P   L  C+S 
Sbjct:     1 MHRRSRGVNIGLLLLLSQIFQVGINNVPPVTLATLALNIW-FFLNPL-KPL--LSSCLSV 56

Query:    61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFV-VLVSFLIIST 119
                  Q+D++RL+LS L H DD HLY+NMVS++ KG  LER  GS  F  ++V+F ++ T
Sbjct:    57 EKCYYQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLL-T 115

Query:   120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
              V Y+ L + +    ++      CA+GFS VLF++K +     P     +L F V   +A
Sbjct:   116 GVVYLFLEFALAEFLNEPDFKRNCAVGFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFA 175

Query:   180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
              W+EL+ IH + P  SF GHL+GILVGL YT   L +++E
Sbjct:   176 CWVELLAIHFISPGTSFAGHLAGILVGLMYTHGPLKKIME 215

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:0048515 "spermatid differentiation" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IEA

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=IEA

GO:0043687 "post-translational protein modification" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0034620 "cellular response to unfolded protein" evidence=IEA

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0010954 "positive regulation of protein processing" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q08DF5 RHBDD1 "Rhomboid domain containing 1" [Bos taurus (taxid:9913)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 83/220 (37%), Positives = 121/220 (55%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSLGICISA 60
             M RR     +G+LLLL Q+  VG +                + +N L +P   L  C+S 
Sbjct:     1 MHRRSRGVNIGLLLLLSQIFQVGINNVPPVTLATLALNIW-FFLNPL-KPL--LSSCLSV 56

Query:    61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFV-VLVSFLIIST 119
                  Q+D++RL+LS L H DD HLY+NMVS++ KG  LER  GS  F  ++V+F ++ T
Sbjct:    57 EKCYYQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLERRLGSRWFAYIIVTFSLL-T 115

Query:   120 SVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYA 179
              V Y+ L + +    ++      CA+GFS VLF++K +     P     +L F V   +A
Sbjct:   116 GVVYLFLEFALAEFLNEPDFKRNCAVGFSGVLFALKVLNNHCCPGGFVNVLGFPVSNRFA 175

Query:   180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
              W+EL+ IH + P  SF GHL+GILVGL YT   L +++E
Sbjct:   176 CWVELLAIHFISPGTSFAGHLAGILVGLMYTHGPLKKIME 215

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q5RBS4 RHBDD1 "Rhomboid-related protein 4" [Pongo abelii (taxid:9601)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 79/219 (36%), Positives = 114/219 (52%)

Query:     1 MARRFFRRELGILLLLYQVLSVGFHXXXXXXXXXXXXXXXXYIMNVLAQPWDSLGICISA 60
             M RR      G++LLL Q+  VG +                + +N     + S   C+S 
Sbjct:     1 MQRRSRGINTGLILLLSQIFHVGINNIPPVTLATLALNIW-FFLNPQKPLYSS---CLSV 56

Query:    61 HTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTS 120
                  QRD++RL+LS L H DD HLY+N  S++ KG  LER  GS  F  +++   + T 
Sbjct:    57 EKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLERRLGSRWFAYVITTFSVLTG 116

Query:   121 VCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAP 180
             V Y++L + +     +      CA+GFS VLF++K +     P     +L F VP  +A 
Sbjct:   117 VVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFAC 176

Query:   181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE 219
             W+ELV IHL  P  SF GH +GILVGL YT+  L +++E
Sbjct:   177 WVELVAIHLFSPGTSFAGHQAGILVGLMYTQGPLKKIME 215

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0010954 "positive regulation of protein processing" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0031293 "membrane protein intracellular domain proteolysis" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0034620 "cellular response to unfolded protein" evidence=ISS

GO:0034644 "cellular response to UV" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043687 "post-translational protein modification" evidence=ISS

GO:0044322 "endoplasmic reticulum quality control compartment" evidence=ISS

GO:0045732 "positive regulation of protein catabolic process" evidence=ISS

GO:0048515 "spermatid differentiation" evidence=ISS

GO:0051047 "positive regulation of secretion" evidence=ISS

GO:2000254 "regulation of male germ cell proliferation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4V8F3	RHBL4_RAT	3, ., 4, ., 2, 1, ., -	0.3863	0.7781	0.6772	yes	N/A
Q5RBS4	RHBL4_PONAB	3, ., 4, ., 2, 1, ., -	0.3835	0.7818	0.6761	yes	N/A
Q8BHC7	RHBL4_MOUSE	3, ., 4, ., 2, 1, ., -	0.4	0.7781	0.6793	yes	N/A
Q8TEB9	RHBL4_HUMAN	3, ., 4, ., 2, 1, ., -	0.3433	0.9163	0.8	yes	N/A
Q8RXW0	Y3761_ARATH	No assigned EC number	0.3541	0.7854	0.6467	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	275
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	1e-12
COG0705	228	COG0705, COG0705, Membrane associated serine prote	4e-08
pfam08551	99	pfam08551, DUF1751, Eukaryotic integral membrane p	0.003

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 18/152 (11%)

Query: 63  ILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVC 122
           +L +    RL+ S   H   +HL +NM++L+  G  LER+ GSV+F++L         + 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLL-------YLLS 53

Query: 123 YVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN----FSVPAVY 178
            +  S + YL +   +     ++G S  +F +        P     L N      +    
Sbjct: 54  GLAGSLLSYLFSPASS----PSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGI 109

Query: 179 APWIELVIIHLMVPNASFKGHLSGILVGLCYT 210
                L+     +P  S   HL G++ GL   
Sbjct: 110 ILLNLLLGF---LPGISNFAHLGGLIAGLLLG 138

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 43/200 (21%), Positives = 78/200 (39%), Gaps = 33/200 (16%)

Query: 28  PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILN-----------QRDYKRLVLSA 76
           PP TL LIL+  L++++ ++   W ++ +      +             +    RL+ + 
Sbjct: 17  PPVTLFLILLNILVFLLELV-LGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAI 75

Query: 77  LEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHD 136
             H   +HL +NM++L V G  LER  G+++F++      +   +  V+           
Sbjct: 76  FLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAP--- 132

Query: 137 VTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVI---IHLMVPN 193
                  ++G S  +F +        P     LL  S+P      I ++I     L    
Sbjct: 133 -------SLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPA--LILILIWLLYSLFSGA 183

Query: 194 ASFK------GHLSGILVGL 207
            SF        HL G++ GL
Sbjct: 184 GSFGPSVAWSAHLGGLIGGL 203

Length = 228

>gnl|CDD|219898 pfam08551, DUF1751, Eukaryotic integral membrane protein (DUF1751)

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 13/66 (19%), Positives = 34/66 (51%)

Query: 88  NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
           ++V+L++ G+ LER++GS + +  +  + + T++   +   ++Y++      L     G 
Sbjct: 27  SLVTLLLGGKYLERLWGSKELLKFILVVNVITNLLVFLYYLLLYMITRSERYLDVPISGG 86

Query: 148 SAVLFS 153
             +L  
Sbjct: 87  YGILAG 92

This domain is found in eukaryotic integral membrane proteins. YOL107W, a Saccharomyces cerervisiae protein, has been shown to localise COP II vesicles. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG2632|consensus	258		99.94
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.93
PTZ00101	278	rhomboid-1 protease; Provisional	99.92
KOG0858|consensus	239		99.9
COG0705	228	Membrane associated serine protease [Amino acid tr	99.88
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	99.86
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.82
KOG2289|consensus	316		99.72
COG5291	313	Predicted membrane protein [Function unknown]	99.69
KOG4463|consensus	323		99.36
KOG2890|consensus	326		99.32
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	99.31
KOG2290|consensus	652		99.28
KOG2980|consensus	310		98.9

>KOG2632|consensus

Probab=99.94  E-value=4.4e-26  Score=195.04  Aligned_cols=191  Identities=31%  Similarity=0.513  Sum_probs=165.2

Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHH
Q psy15808         22 VGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELER  101 (275)
Q Consensus        22 ~~~~~~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~  101 (275)
                      +++...|.+|-.++.++.++|++....   ........|...+++.|.||++||.++|.+..|+++||+.++..|..+|+
T Consensus         9 ~~~~~~p~~ts~~~~~~~~i~lv~~~~---~i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~   85 (258)
T KOG2632|consen    9 QFWMKIPLLTSIVVVLAILIYLVSFFP---GIVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFER   85 (258)
T ss_pred             cccccchHHHHHHHHHHHHHHHHhccc---hhhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHh
Confidence            345678999999999999999966543   23366777888888999999999999999999999999999999999999


Q ss_pred             hhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEE-eechhhHH
Q psy15808        102 MFG-SVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYA  179 (275)
Q Consensus       102 ~~G-~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~-~~i~~~~~  179 (275)
                      .+| +.+++.+..+.+++++++++++.+...   ..+...+..++|.||+.||+++......|.+...++| +.||.++.
T Consensus        86 ~~G~t~~~l~~~~llalf~gIl~ll~~~~~~---~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~  162 (258)
T KOG2632|consen   86 THGTTVRILMFTVLLALFSGILYLLAYHVFL---LSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLA  162 (258)
T ss_pred             hccceehHHHHHHHHHHHHHHHHHHHHHHHh---hcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHH
Confidence            999 899999988899999999988876322   2333346678999999999999988888988888898 78999999


Q ss_pred             HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhccccc
Q psy15808        180 PWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE  219 (275)
Q Consensus       180 ~~~~l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~l~~  219 (275)
                      ||+.++.+.++.|+.|+.+|+||+++|+.|.+... ++.|
T Consensus       163 Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~~f-~lip  201 (258)
T KOG2632|consen  163 PWALLIATQILVPQASFLGHLCGLLVGYAYAFSSF-GLIP  201 (258)
T ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhh-ccCC
Confidence            99999999999999999999999999999999755 5555

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.93  E-value=3.7e-25  Score=195.41  Aligned_cols=170  Identities=15%  Similarity=0.165  Sum_probs=124.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhCh
Q psy15808         26 LIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGS  105 (275)
Q Consensus        26 ~~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~  105 (275)
                      +..|+|..++++|+++|++...............|.....++||||++|+.|+|.|+.|+++||+.+|.+|+.+|+.+|+
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~  171 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS  171 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            46789999999999999976554332222222334344457899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHh---hCCCceeEEEEeechhhHHHHH
Q psy15808        106 VQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTR---QSPDVTHQLLNFSVPAVYAPWI  182 (275)
Q Consensus       106 ~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~---~~p~~~~~l~~~~i~~~~~~~~  182 (275)
                      ++++.+|+++++++++.....        ..     ....|+||+++|++++...   ..|+.     ++.+|.....+.
T Consensus       172 ~~~l~l~l~s~i~~~~~~~~~--------~~-----~~~gGaSGvVygL~g~~~~~~~~~p~~-----~~~lp~~~~~f~  233 (276)
T PRK10907        172 GKLIVITLISALLSGWVQSKF--------SG-----PWFGGLSGVVYALMGYVWLRGERDPQS-----GIYLPRGLIAFA  233 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------cc-----chhhHHHHHHHHHHHHHHHHhcccccc-----chhhhHHHHHHH
Confidence            999999999999999875321        11     2367999999999986543   23332     222333222222


Q ss_pred             H----HHHHHHhCCchhHHHHHHHHHHHHHHHHHh
Q psy15808        183 E----LVIIHLMVPNASFKGHLSGILVGLCYTETS  213 (275)
Q Consensus       183 ~----l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~  213 (275)
                      .    +....+..+++++.||++|+++|.++++..
T Consensus       234 llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~  268 (276)
T PRK10907        234 LLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWD  268 (276)
T ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh
Confidence            1    122334456899999999999999998853

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.92  E-value=3.2e-25  Score=195.48  Aligned_cols=182  Identities=18%  Similarity=0.241  Sum_probs=129.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccc---cc-----cce-eechhhhcccCCcceeeecccccCChhHHHHHHHHHHHH
Q psy15808         25 HLIPPGTLTLILIQTLLYIMNVLAQPW---DS-----LGI-CISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVK   95 (275)
Q Consensus        25 ~~~ppvT~~li~~~~~v~ll~~~~~~~---~~-----~~l-~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~   95 (275)
                      -.+|.+|..++++++++|++.......   .+     ..+ +..++.+ +++||||++|+.|+|.++.|+++||+.++.+
T Consensus        50 f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~  128 (278)
T PTZ00101         50 FTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHANIFHTFFNVFFQLRM  128 (278)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            367889999999999999976553211   11     123 2345544 5789999999999999999999999999999


Q ss_pred             HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhh-------CCCceeE
Q psy15808         96 GRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQ-------SPDVTHQ  168 (275)
Q Consensus        96 g~~lE~~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~-------~p~~~~~  168 (275)
                      |..+|+.+|+.|+..+|+++|+.+++++....         +   ....+|+||++||+++++...       .+.+...
T Consensus       129 G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~---------~---~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~  196 (278)
T PTZ00101        129 GFTLEKNYGIVKIIILYFLTGIYGNILSSSVT---------Y---CPIKVGASTSGMGLLGIVTSELILLWHVIRHRERV  196 (278)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHHHHHHHHHc---------c---CCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            99999999999999999999999998764321         1   245899999999999876421       1111100


Q ss_pred             EEEeechhhHHHHHHH---HHHHHhCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHH
Q psy15808        169 LLNFSVPAVYAPWIEL---VIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVS  226 (275)
Q Consensus       169 l~~~~i~~~~~~~~~l---~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~l~~~~~~~~~  226 (275)
                           +.. ...+...   .......+++++.||++|+++|++++..+.+++. +.++|..
T Consensus       197 -----~~~-~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~-~~~~~~~  250 (278)
T PTZ00101        197 -----VFN-IIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME-NKPSWYD  250 (278)
T ss_pred             -----HHH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh-hcccHHH
Confidence                 000 0001111   1112234789999999999999999998766553 3444443

>KOG0858|consensus

Probab=99.90  E-value=3.4e-23  Score=174.97  Aligned_cols=200  Identities=19%  Similarity=0.264  Sum_probs=158.8

Q ss_pred             HHHhcccCCchHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCC-hhHHHHHHHHHHHHH
Q psy15808         18 QVLSVGFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGD-DMHLYYNMVSLIVKG   96 (275)
Q Consensus        18 ~~~~~~~~~~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~-~~hll~N~~~l~~~g   96 (275)
                      +....++.++|||||...++|+++.++. ..+..++.++.++|+.++++.|+||++|+.+..+. -+|.++||+++|.++
T Consensus         3 ~~l~~~~~~iPpVTR~~~~~~v~tt~~~-~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~   81 (239)
T KOG0858|consen    3 MDLLNFYLQIPPVTRYYTTACVVTTLLV-RLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS   81 (239)
T ss_pred             hhHHHHHhcCChHHHHHHHHHHHHHHHH-hhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence            3344478899999999999999999954 45567888999999999999999999999999986 799999999999999


Q ss_pred             HHHHHhh---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEE-e
Q psy15808         97 RELERMF---GSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-F  172 (275)
Q Consensus        97 ~~lE~~~---G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~-~  172 (275)
                      +.||+..   .+++|+.+.+.+++.-.+......              ...+ .++.++++.+.|++.+|+.+++++| +
T Consensus        82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~--------------~~fL-g~~l~~~l~YvWs~~Np~~~v~F~g~~  146 (239)
T KOG0858|consen   82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVY--------------IVFL-GQSLVFMLVYVWSKRNPDVIVSFFGLI  146 (239)
T ss_pred             HHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH--------------HHHH-HHHHHHHHHHHHHhhCCCceEEEEEEe
Confidence            9999844   257888888766665554332111              1122 3467889999999999999999998 8


Q ss_pred             echhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhcccccc--cchhHHHHHHhhhcccc
Q psy15808        173 SVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVER--SGRSVSRVVNTLTNVFK  237 (275)
Q Consensus       173 ~i~~~~~~~~~l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~  237 (275)
                      .++++|+||+++....+.. +.+ ...+.|+++||+|.+  ++...|+  .++...+.+.++++.+.
T Consensus       147 ~f~a~YlPwvll~fs~l~g-~~~-~~dllGi~~GHiy~f--l~~~~p~~~gg~~~l~TP~~l~rl~~  209 (239)
T KOG0858|consen  147 TFKAPYLPWVLLGFSFLFG-GSI-LVDLLGIIVGHIYYF--LDDVYPRDYGGRDLLKTPQFLKRLFA  209 (239)
T ss_pred             cCccccchHHHHHHHHHhC-Cch-HHHHHhhhhheeEEE--EeeeccCCcCCcCcccCHHHHHHhcC
Confidence            9999999999655444443 444 889999999999998  7766663  55777788888777765

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.88  E-value=2.5e-22  Score=174.03  Aligned_cols=180  Identities=23%  Similarity=0.353  Sum_probs=133.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhcccccc-------ceeechhhhcccC---CcceeeecccccCChhHHHHHHHHHHHHH
Q psy15808         27 IPPGTLTLILIQTLLYIMNVLAQPWDSL-------GICISAHTILNQR---DYKRLVLSALEHGDDMHLYYNMVSLIVKG   96 (275)
Q Consensus        27 ~ppvT~~li~~~~~v~ll~~~~~~~~~~-------~l~~~~~~i~~~~---q~wRllT~~f~H~~~~hll~N~~~l~~~g   96 (275)
                      .+++|+.++++|+.+++...........       .....|.......   |+||++|+.|+|.|+.|+++||+.++.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            6899999999999999976554321111       1333444433322   89999999999999999999999999999


Q ss_pred             HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEE--eec
Q psy15808         97 RELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN--FSV  174 (275)
Q Consensus        97 ~~lE~~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~--~~i  174 (275)
                      ..+|+.+|+.+|+.+|+.+++++++......        ...  ..+.+|+||+++|+++++....|..+.....  ++.
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~--------~~~--~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~  165 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFG--------PKG--GAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPR  165 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHc--------ccc--cCcccchhHHHHHHHHHHHHHccccchhhhhccCch
Confidence            9999999999999999999999998854332        111  1469999999999999999999986655544  333


Q ss_pred             hhhHHHHHHHHHHHHh---C---CchhHHHHHHHHHHHHHHHHHhhccc
Q psy15808        175 PAVYAPWIELVIIHLM---V---PNASFKGHLSGILVGLCYTETSLGRL  217 (275)
Q Consensus       175 ~~~~~~~~~l~~~~~~---~---~~vs~~~hl~G~l~G~l~~~~~~~~l  217 (275)
                      +....... .++..+.   .   +++++.+|++|++.|.+++....+..
T Consensus       166 ~~~~~i~~-~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~  213 (228)
T COG0705         166 PALILILI-WLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKL  213 (228)
T ss_pred             hHHHHHHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33322222 1222221   1   25889999999999999998766554

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=99.86  E-value=1.3e-20  Score=159.81  Aligned_cols=179  Identities=22%  Similarity=0.286  Sum_probs=137.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCC-hhHHHHHHHHHHHHHHHHHHhh--
Q psy15808         27 IPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGD-DMHLYYNMVSLIVKGRELERMF--  103 (275)
Q Consensus        27 ~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~-~~hll~N~~~l~~~g~~lE~~~--  103 (275)
                      +|||||.+++.++++.++.. .+..++.++.++++.+++++|+||++|+.|..++ -.++++|++.++..++.+|+..  
T Consensus         1 iPpVTR~~~~~~~~~s~l~~-~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~   79 (197)
T PF04511_consen    1 IPPVTRYWLISTVALSLLVS-FGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQ   79 (197)
T ss_pred             CChhHHHHHHHHHHHHHHHH-CCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCC
Confidence            59999999999999999654 4455777889999999999999999999998765 4899999999999999999973  


Q ss_pred             C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEE-eechhhHHHH
Q psy15808        104 G-SVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYAPW  181 (275)
Q Consensus       104 G-~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~-~~i~~~~~~~  181 (275)
                      + +.+|+...+.++....++    +.+..    .+ ..+. ..-..+...++.+.|++.+|+.+++++| ++++++|+||
T Consensus        80 ~~~ady~~~ll~~~~~i~~~----~~~~~----~~-~~~~-~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~  149 (197)
T PF04511_consen   80 GRSADYLWFLLFGASLILIL----SLLIG----PY-FFNI-PFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPW  149 (197)
T ss_pred             CCHHHHHHHHHHHHHHHHHH----HHhhc----cc-hhHH-HHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHH
Confidence            2 367887766443333322    22110    00 0011 2234668899999999999999999998 8999999999


Q ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhccccc
Q psy15808        182 IELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVE  219 (275)
Q Consensus       182 ~~l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~l~~  219 (275)
                      +++++. ++..+.+...++.|+++||+|.+  ++..+|
T Consensus       150 ~~~~~~-~l~~~~~~~~~l~Gi~~Ghly~f--l~~~~p  184 (197)
T PF04511_consen  150 VLLAFS-LLFGGSSPIPDLLGILVGHLYYF--LKDIYP  184 (197)
T ss_pred             HHHHHH-HHhCCCcHHHHHHHHHHHHHHHH--HHHhcc
Confidence            955444 44444567799999999999998  666666

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.82  E-value=1.6e-20  Score=151.06  Aligned_cols=138  Identities=30%  Similarity=0.402  Sum_probs=98.6

Q ss_pred             ccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q psy15808         65 NQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCA  144 (275)
Q Consensus        65 ~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  144 (275)
                      +++||||++|+.|+|.|+.|+++|++.++.+|..+|+.+|++++..+|+.+++.+++..++...        +   ....
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~--------~---~~~~   70 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSP--------P---NQPY   70 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------S-------
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccc--------c---cccc
Confidence            5789999999999999999999999999999999999999999999999999999887654321        1   1268


Q ss_pred             cchHHHHHHHHHHHHhhCCCceeEEE-E---eechhhHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhcc
Q psy15808        145 IGFSAVLFSMKTIRTRQSPDVTHQLL-N---FSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGR  216 (275)
Q Consensus       145 ~G~Sg~i~al~~~~~~~~p~~~~~l~-~---~~i~~~~~~~~~l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~  216 (275)
                      +|+||+++|++.+.....|+.+.... .   +.++....++.   ......+++++.+|++|+++|.+++...+|+
T Consensus        71 ~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~  143 (145)
T PF01694_consen   71 VGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVII---LLLGFIPNISFLGHLGGFLAGLLYGFLILRR  143 (145)
T ss_dssp             -SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHH---HCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred             CCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999988776655432221 1   11111111111   1111167899999999999999999977664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289|consensus

Probab=99.72  E-value=4.3e-19  Score=158.00  Aligned_cols=133  Identities=18%  Similarity=0.234  Sum_probs=98.5

Q ss_pred             hhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q psy15808         62 TILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELY  141 (275)
Q Consensus        62 ~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~  141 (275)
                      ...+++|+||++|++|+|+|+.|+++||+.+..+|..+|..+|..|+..+|+++++.|++++++.         ++   +
T Consensus       112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~---------d~---~  179 (316)
T KOG2289|consen  112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLF---------DP---N  179 (316)
T ss_pred             ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHh---------cc---C
Confidence            45567899999999999999999999999999999999999999999999999999999987543         44   4


Q ss_pred             ccccchHHHHHHHHHHHHhh-CCCceeEEEEeechhhHHH---HHHH---HHHHHhCCchhHHHHHHHHHHHHHHHHH
Q psy15808        142 QCAIGFSAVLFSMKTIRTRQ-SPDVTHQLLNFSVPAVYAP---WIEL---VIIHLMVPNASFKGHLSGILVGLCYTET  212 (275)
Q Consensus       142 ~~~~G~Sg~i~al~~~~~~~-~p~~~~~l~~~~i~~~~~~---~~~l---~~~~~~~~~vs~~~hl~G~l~G~l~~~~  212 (275)
                      ...+|+||++||++++.... ..+.+  .    ++.+...   .+..   .+-....+.++..+|++|...|..+++.
T Consensus       180 ~~sVGASggvfaLlgA~Ls~l~~Nw~--~----m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fi  251 (316)
T KOG2289|consen  180 SISVGASGGVFALLGAHLSNLLTNWT--I----MKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFV  251 (316)
T ss_pred             CceecccHHHHHHHHHHHHHHHhhHH--H----hcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHH
Confidence            56999999999999875421 11100  0    1111111   1111   1111223677888898888888888775

>COG5291 Predicted membrane protein [Function unknown]

Probab=99.69  E-value=1.8e-17  Score=139.80  Aligned_cols=193  Identities=18%  Similarity=0.242  Sum_probs=138.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCC-hhHHHHHHHHHHHHHHHHHHhh-
Q psy15808         26 LIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGD-DMHLYYNMVSLIVKGRELERMF-  103 (275)
Q Consensus        26 ~~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~-~~hll~N~~~l~~~g~~lE~~~-  103 (275)
                      ++||+||.+..+..++.++.. .+..++.+..+..+..+++.||||++|+....++ -+..++|++++|...+.||+-. 
T Consensus        18 ~IPPITRy~~ll~~a~til~~-~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f   96 (313)
T COG5291          18 RIPPITRYMTLLISAVTILVY-VDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCF   96 (313)
T ss_pred             cCCcHHHHHHHHHHHHHHHHH-HhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhcccc
Confidence            499999999888888888543 3355677888888888889999999999888775 6999999999999999999933 


Q ss_pred             Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEE-eechhhHHH
Q psy15808        104 GS--VQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYAP  180 (275)
Q Consensus       104 G~--~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~-~~i~~~~~~  180 (275)
                      ++  .+|......+.++-..+    +.+    .+.+      ++=.++...++-+.|+..+|..+++++| ++++.||+|
T Consensus        97 ~~~lv~Y~~yl~~~~l~i~a~----s~I----~gg~------saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP  162 (313)
T COG5291          97 NTSLVEYFWYLLVISLVIFAI----SNI----YGGI------SALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLP  162 (313)
T ss_pred             CccHHHHHHHHHHHHHHHHHH----HHH----hcch------hhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhh
Confidence            33  46665444322211111    111    1111      1112334455567788999999999998 899999999


Q ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHhhhccc
Q psy15808        181 WIELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVF  236 (275)
Q Consensus       181 ~~~l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~  236 (275)
                      ++ ++.+.++...-...-.+.|+..|++..+  ++.+++.++|.+.+..++.++.+
T Consensus       163 ~I-llgfsfl~~~g~~i~~vlGf~~g~~~h~--~g~I~~mi~r~~~~t~~~~~~~~  215 (313)
T COG5291         163 FI-LLGFSFLSRRGISIDDVLGFVVGHLFHY--FGDIYPMIGRDILSTPCWVKKLF  215 (313)
T ss_pred             HH-HHHHHHHhcCCccceeeeeeeecccccc--ccchhhhhhcccCCCcccccccc
Confidence            99 4455555443444557889999988877  78888888888887777666544

>KOG4463|consensus

Probab=99.36  E-value=4.6e-13  Score=114.38  Aligned_cols=229  Identities=17%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccccccceeechhhhc-ccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhChH
Q psy15808         28 PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTIL-NQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSV  106 (275)
Q Consensus        28 ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~-~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~  106 (275)
                      -|||+..++...++.+++-..+ .+. .+.++.+..+ +++|+||++.++|...|...+++-++.+|.+ +.+||.+|+.
T Consensus        11 mpVTK~~~iT~~~~~vvagI~~-~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGSh   87 (323)
T KOG4463|consen   11 MPVTKAFVITSALFTVVAGIQG-RKS-KFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSH   87 (323)
T ss_pred             cchHHHHHHHHHHHHHHHHhhh-ccc-ccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccc
Confidence            4799998888888777544332 222 3444444444 4579999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCc-eeEEEEeechhhHHHHHHHH
Q psy15808        107 QFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDV-THQLLNFSVPAVYAPWIELV  185 (275)
Q Consensus       107 ~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~-~~~l~~~~i~~~~~~~~~l~  185 (275)
                      ||..+.+.++.++.++...+..++...+++-     ..++..|.+||.++-+-...|.. ...++++++..|...++.+.
T Consensus        88 ky~~fiv~s~~~~~l~~~il~~l~~~~~~nl-----~~~qp~~liFa~~~~~y~~ip~~~f~r~f~~~f~dkni~~i~~~  162 (323)
T KOG4463|consen   88 KYSVFIVFSGTVSLLLEVILLSLLKDTTANL-----LTSQPYGLIFASFIPFYLDIPVSTFFRVFGVNFSDKNISFIYLA  162 (323)
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHHHHhhh-----hhcCCCceeeeeccceEEEecceeEEEeecccccccceeeeccc
Confidence            9999999999999998888877766555432     34555567777765444444542 34555666666643333222


Q ss_pred             HHHHh-CC-----------chhHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHhhhcccccCCCCCCCCCCCCCCC
Q psy15808        186 IIHLM-VP-----------NASFKGHLSGILVGLCYTETSLGRLVERSGRSVSRVVNTLTNVFKLDDDCNGDDEDSDTSA  253 (275)
Q Consensus       186 ~~~~~-~~-----------~vs~~~hl~G~l~G~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (275)
                      ...+. .+           ..+..--++|++.|++|-......+.++...-....++         ....|.-...+++-
T Consensus       163 G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~~agi~~~~~~~~~~~f~d---------~~~~p~~~~~~~PV  233 (323)
T KOG4463|consen  163 GVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLNIAGIRKAKFPEFVASFFD---------RLSFPSFGNSPPPV  233 (323)
T ss_pred             chhhhcCcccccccccceeecccccccchhhhhhHhhcccccccccccHHHHHhhhc---------cccCCCCCCCCCch
Confidence            21111 11           23334467999999998776444443333322222221         22233333344446


Q ss_pred             ccccccCCCC-ccchhhhccc
Q psy15808        254 SFLDFTDNTK-NDAATIVSAS  273 (275)
Q Consensus       254 s~~~~~~~~~-~~~~~~~~~~  273 (275)
                      ||.+-++||. +..++.--|+
T Consensus       234 Syfisq~pPTR~nv~~~A~at  254 (323)
T KOG4463|consen  234 SYFISQAPPTRNNVGTIAPAT  254 (323)
T ss_pred             hhhcccCCcchhhhhhccccc
Confidence            6777666444 4444443333

>KOG2890|consensus

Probab=99.32  E-value=1.2e-11  Score=108.11  Aligned_cols=195  Identities=15%  Similarity=0.146  Sum_probs=136.5

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhhccc---cccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHH
Q psy15808         23 GFHLIPPGTLTLILIQTLLYIMNVLAQPW---DSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGREL   99 (275)
Q Consensus        23 ~~~~~ppvT~~li~~~~~v~ll~~~~~~~---~~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~l   99 (275)
                      -..+..++.+.+.++....|+........   ....+.+-|..++  ...|+++|+.|+..+.+.++.|.+.+...|+.+
T Consensus        20 ~l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p~y~lvp~~~~--~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~l   97 (326)
T KOG2890|consen   20 LLLNLEVVVSAICVLTLFGYILSFGNFTILLATLPGYQLVPNALF--FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFL   97 (326)
T ss_pred             HhhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhccccccCCcchh--hhhHHHHhcchhhhhHHHHHHHHHheeecceee
Confidence            34455555555556777677744321110   1112233333332  378999999999999999999999999999999


Q ss_pred             HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEE-eechhhH
Q psy15808        100 ERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVY  178 (275)
Q Consensus       100 E~~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~-~~i~~~~  178 (275)
                      |+.||+.+++.++.+.-...+++..+.+++++..+.++.+......|..|.+.|++++++|..|+..+...- -++..+.
T Consensus        98 Ep~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~  177 (326)
T KOG2890|consen   98 EPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAH  177 (326)
T ss_pred             ccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhh
Confidence            999999999999999888888888888888888888888877788999999999999999999997543321 1222222


Q ss_pred             HHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHhhccccc
Q psy15808        179 APWIELVIIHLM-VPNASFKGHLSGILVGLCYTETSLGRLVE  219 (275)
Q Consensus       179 ~~~~~l~~~~~~-~~~vs~~~hl~G~l~G~l~~~~~~~~l~~  219 (275)
                      .|+..+++..++ .-.....+.+.-+..|.+.+|.++|...+
T Consensus       178 lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~  219 (326)
T KOG2890|consen  178 LPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQR  219 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheeccc
Confidence            444433221111 11234445666677788888888887744

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=99.31  E-value=1.3e-12  Score=98.47  Aligned_cols=93  Identities=19%  Similarity=0.320  Sum_probs=85.1

Q ss_pred             CcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccch
Q psy15808         68 DYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF  147 (275)
Q Consensus        68 q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~  147 (275)
                      ..|+++|+.|+|.|+..+++|.+.++..|+.+|+.||+++++.++.+..+.++++..+..++.+...+++.+......|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            67999999999999999999999999999999999999999999999999999999999888888888887656778899


Q ss_pred             HHHHHHHHHHHHh
Q psy15808        148 SAVLFSMKTIRTR  160 (275)
Q Consensus       148 Sg~i~al~~~~~~  160 (275)
                      .|++.|++++++|
T Consensus        87 ~~~~~g~lVa~kQ   99 (99)
T PF08551_consen   87 MGVLAGFLVAFKQ   99 (99)
T ss_pred             HHhHhheEEEEeC
Confidence            9999998877653

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG2290|consensus

Probab=99.28  E-value=6.9e-13  Score=121.02  Aligned_cols=133  Identities=19%  Similarity=0.250  Sum_probs=100.8

Q ss_pred             CCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccc
Q psy15808         67 RDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIG  146 (275)
Q Consensus        67 ~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G  146 (275)
                      .|++||+|+.|+|+++.|++..+.+.+.+.+.+|+..|+.|...+|+++|+.||+++.+.         -|   ..+.+|
T Consensus       449 dQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIF---------lp---Y~~eVg  516 (652)
T KOG2290|consen  449 DQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIF---------LP---YRAEVG  516 (652)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheee---------ec---cccccC
Confidence            488999999999999999999999999999999999999999999999999999986432         12   467899


Q ss_pred             hHHHHHHHHHHHHh-hCCCceeEEEEeechhhHHHHHH-----HHHHHHhCCchhHHHHHHHHHHHHHHHHHhhccc
Q psy15808        147 FSAVLFSMKTIRTR-QSPDVTHQLLNFSVPAVYAPWIE-----LVIIHLMVPNASFKGHLSGILVGLCYTETSLGRL  217 (275)
Q Consensus       147 ~Sg~i~al~~~~~~-~~p~~~~~l~~~~i~~~~~~~~~-----l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~l  217 (275)
                      .+|..+|++..... +....+  +.    .-+|-.+.-     +++...+.|.+++++|+.|.+.|.+..+.++..+
T Consensus       517 Pa~sQ~Gila~l~vEl~qs~~--il----~~~w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi  587 (652)
T KOG2290|consen  517 PAGSQFGILACLFVELFQSWQ--IL----ERPWRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYI  587 (652)
T ss_pred             CcccccchHHHHHHHHHhhhH--hh----hhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhhccc
Confidence            99998888754322 111111  11    112222221     2222245689999999999999999998877766

>KOG2980|consensus

Probab=98.90  E-value=1.4e-09  Score=95.36  Aligned_cols=188  Identities=18%  Similarity=0.167  Sum_probs=125.3

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHH-HHHH
Q psy15808         23 GFHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGR-ELER  101 (275)
Q Consensus        23 ~~~~~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~-~lE~  101 (275)
                      |.+..|-+...++++|+++|.+.-.......+...+..+.+.+. ..|.++++.|.|.+.+|+..||+.+..+.. .+-.
T Consensus       110 w~~~~~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~~~t-~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~  188 (310)
T KOG2980|consen  110 WISGANGVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNAYKT-GCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKG  188 (310)
T ss_pred             HhhcCCcchhHHHHHHHHHHHHHHhcchhhhhhhHHhhcccccc-cceeEEeehhcchhHhhhcHHHHHHHHHhcccccC
Confidence            45555557778999999999965544221111111111222223 556799999999999999999998888877 6777


Q ss_pred             hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEE-eechhhHH-
Q psy15808        102 MFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLN-FSVPAVYA-  179 (275)
Q Consensus       102 ~~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~-~~i~~~~~-  179 (275)
                      ..|...+..+|+.++..+..+...        ...+..+.++..|+||++++.....+..+|+.+..+.. ++++.-.. 
T Consensus       189 ~~~~~~~~AlylSa~~~~~~i~~~--------~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~  260 (310)
T KOG2980|consen  189 SLGFSSFFALYLSAGVKGLFISVK--------DKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGL  260 (310)
T ss_pred             CcchhhcccceeccccccceeEee--------ccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchh
Confidence            778888888887544444433210        01244456778999999999999999999998777665 66665322 


Q ss_pred             HHHHHHHHH-----HhCCchhHHHHHHHHHHHHHHHHHhhccccc
Q psy15808        180 PWIELVIIH-----LMVPNASFKGHLSGILVGLCYTETSLGRLVE  219 (275)
Q Consensus       180 ~~~~l~~~~-----~~~~~vs~~~hl~G~l~G~l~~~~~~~~l~~  219 (275)
                      ++-+.....     +-....++.+|++|-+.|..++.....+++.
T Consensus       261 ~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~k  305 (310)
T KOG2980|consen  261 AFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARIRK  305 (310)
T ss_pred             HHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHHHc
Confidence            221111111     1123567779999999999998876666633

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	1e-12
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	3e-11

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 17/183 (9%)

Query: 28  PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYY 87
            P T  +++   +++I   +    + +           + ++ R    AL H   MH+ +
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILF 63

Query: 88  NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
           N++     G  +E+  GS + +V+     + +       S   +              G 
Sbjct: 64  NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWF-------------GGL 110

Query: 148 SAV---LFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGIL 204
           S V   L     +R  + P     L    +      WI      L   + +   H++G+ 
Sbjct: 111 SGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALI-WIVAGWFDLFGMSMANGAHIAGLA 169

Query: 205 VGL 207
           VGL
Sbjct: 170 VGL 172

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 25/187 (13%)

Query: 28  PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYY 87
              TL L  +  L+YI   L    D + +           +  R +   L H  ++H+ +
Sbjct: 9   GKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILF 68

Query: 88  NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
           N+    + G  +ER FGSV+ ++L       T      +S   +              G 
Sbjct: 69  NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAF-------------FGL 115

Query: 148 SAVLFS------MKTIRTRQSPDVTHQLLNFSVPAVYAPWIEL-VIIHLMVPNASFKGHL 200
           S V+++      ++        D+        +       I L  I  L         H+
Sbjct: 116 SGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLL-----VGIALGFISPLFGVEMGNAAHI 170

Query: 201 SGILVGL 207
           SG++VGL
Sbjct: 171 SGLIVGL 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.94

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=1.2e-27  Score=199.28  Aligned_cols=173  Identities=15%  Similarity=0.183  Sum_probs=129.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhcccc-ccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhh
Q psy15808         25 HLIPPGTLTLILIQTLLYIMNVLAQPWD-SLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMF  103 (275)
Q Consensus        25 ~~~ppvT~~li~~~~~v~ll~~~~~~~~-~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~  103 (275)
                      ++.||+|+.++++|+++|++........ ...+.+.|.. .+++||||++|+.|+|.|+.|+++||+.++.+|+.+|+.+
T Consensus         1 ~~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~   79 (181)
T 2xov_A            1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL   79 (181)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence            3679999999999999999766543211 2344555543 4568999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHH---hhCCCceeEEEEeechhhHHH
Q psy15808        104 GSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRT---RQSPDVTHQLLNFSVPAVYAP  180 (275)
Q Consensus       104 G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~---~~~p~~~~~l~~~~i~~~~~~  180 (275)
                      |++||+.+|+.+++.+++.+.+.        .++     ..+|+||+++|++++..   ...|+.+..   ++.+.....
T Consensus        80 G~~~fl~~yl~~~i~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~~~~~~~~  143 (181)
T 2xov_A           80 GSGKLIVITLISALLSGYVQQKF--------SGP-----WFGGLSGVVYALMGYVWLRGERDPQSGIY---LQRGLIIFA  143 (181)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CceeHHHHHHHHHHHHHHHHhhCcCceee---eHHHHHHHH
Confidence            99999999999999999876432        122     28999999999998653   466765432   222222111


Q ss_pred             HHHHHHHHHh---CCchhHHHHHHHHHHHHHHHHHhhc
Q psy15808        181 WIELVIIHLM---VPNASFKGHLSGILVGLCYTETSLG  215 (275)
Q Consensus       181 ~~~l~~~~~~---~~~vs~~~hl~G~l~G~l~~~~~~~  215 (275)
                      .. .+...+.   .+++++.+|++|+++|+++++...|
T Consensus       144 ~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          144 LI-WIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HH-HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            11 1223332   2589999999999999999986654

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.94  E-value=1.4e-27  Score=201.27  Aligned_cols=174  Identities=18%  Similarity=0.228  Sum_probs=128.1

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHhhcccc-ccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHh
Q psy15808         24 FHLIPPGTLTLILIQTLLYIMNVLAQPWD-SLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERM  102 (275)
Q Consensus        24 ~~~~ppvT~~li~~~~~v~ll~~~~~~~~-~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~  102 (275)
                      -.+.||+|+.++++|+++|+++...+... .+.+.+.|..+ .++||||++|++|+|.|+.|+++||+.++.+|+.+|+.
T Consensus         5 ~~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~   83 (196)
T 2nr9_A            5 LAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERT   83 (196)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999766542211 23455566554 56799999999999999999999999999999999999


Q ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHh---hCCCceeEEEEeechhhHH
Q psy15808        103 FGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTR---QSPDVTHQLLNFSVPAVYA  179 (275)
Q Consensus       103 ~G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~---~~p~~~~~l~~~~i~~~~~  179 (275)
                      +|++||+.+|+++++.+++++.+.        .++     ..+|+||+++|++++...   ..|+.    +.++.+....
T Consensus        84 ~G~~~~l~~yl~~~~~~~l~~~~~--------~~~-----~~vGaSGai~gl~g~~~~~~~~~~~~----~~~~~~~~~~  146 (196)
T 2nr9_A           84 FGSVKLLMLYVVASAITGYVQNYV--------SGP-----AFFGLSGVVYAVLGYVFIRDKLNHHL----FDLPEGFFTM  146 (196)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHH--------HCS-----CCCCSHHHHHHHHHHHHHHHHSSTTS----CCCCCSSTTT
T ss_pred             HChHHHHHHHHHHHHHHHHHHHHh--------cCC-----CeeeHHHHHHHHHHHHHHHHHhcchh----hcchHHHHHH
Confidence            999999999999999999876432        122     289999999999986543   34432    1122222211


Q ss_pred             HHHHHHHHHHhC----CchhHHHHHHHHHHHHHHHHHhhcc
Q psy15808        180 PWIELVIIHLMV----PNASFKGHLSGILVGLCYTETSLGR  216 (275)
Q Consensus       180 ~~~~l~~~~~~~----~~vs~~~hl~G~l~G~l~~~~~~~~  216 (275)
                      ..+ .+...+..    +++++.+|++|+++|.++++...+.
T Consensus       147 ~~~-~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~  186 (196)
T 2nr9_A          147 LLV-GIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL  186 (196)
T ss_dssp             TTT-TTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            111 11222222    4899999999999999999866543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	2e-11
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	2e-09

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 28  PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYY 87
            P T  +++   +++I   +    + +           + ++ R    AL H   MH+ +
Sbjct: 4   GPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILF 63

Query: 88  NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
           N++     G  +E+  GS + +V+     + +       S   +     ++ +    +G+
Sbjct: 64  NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGG---LSGVVYALMGY 120

Query: 148 SAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGL 207
             +                       +      WI      L   + +   H++G+ VGL
Sbjct: 121 VWLRGERDPQSGIYLQ--------RGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGL 172

Query: 208 CY 209
             
Sbjct: 173 AM 174

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 54.0 bits (129), Expect = 2e-09
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 28  PPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYY 87
              TL L  +  L+YI   L    D + +           +  R +   L H  ++H+ +
Sbjct: 6   GKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILF 65

Query: 88  NMVSLIVKGRELERMFGSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGF 147
           N+    + G  +ER FGSV+ ++L       T      +S   +              G 
Sbjct: 66  NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFF----------GLSGV 115

Query: 148 SAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIELVIIHLMVPNASFKGHLSGILVGL 207
              +     IR + +  +      F    +    +  +   L         H+SG++VGL
Sbjct: 116 VYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISP-LFGVEMGNAAHISGLIVGL 174

Query: 208 CY 209
            +
Sbjct: 175 IW 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.94
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.94

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.1e-27  Score=194.43  Aligned_cols=175  Identities=15%  Similarity=0.157  Sum_probs=127.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhC
Q psy15808         25 HLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMFG  104 (275)
Q Consensus        25 ~~~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~G  104 (275)
                      |+.+|+|..++++|+++|++...............+.....++||||++|+.|+|.|+.|+++||+.++.+|+.+|+.+|
T Consensus         1 ~r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G   80 (180)
T d3b45a1           1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG   80 (180)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            57899999999999999997554433333333334455566789999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEEeechhhHHHHHHH
Q psy15808        105 SVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVYAPWIEL  184 (275)
Q Consensus       105 ~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~~~i~~~~~~~~~l  184 (275)
                      ++|++.+|+++++.++++..+..             .....|+||+++|++++.....+.........+..........+
T Consensus        81 ~~~~~~~~~~~~~~g~l~~~~~~-------------~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (180)
T d3b45a1          81 SGKLIVITLISALLSGYVQQKFS-------------GPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWI  147 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHH
T ss_pred             chhheeeeeHHHHHHHHHHHHHh-------------ccccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHHHH
Confidence            99999999999999998764421             23578999999999887655433222111111111111111111


Q ss_pred             H--HHHHhCCchhHHHHHHHHHHHHHHHHH
Q psy15808        185 V--IIHLMVPNASFKGHLSGILVGLCYTET  212 (275)
Q Consensus       185 ~--~~~~~~~~vs~~~hl~G~l~G~l~~~~  212 (275)
                      .  ......+++++.+|++|+++|+++++.
T Consensus       148 ~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~  177 (180)
T d3b45a1         148 VAGWFDLFGMSMANGAHIAGLAVGLAMAFV  177 (180)
T ss_dssp             HHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence            1  122234789999999999999999984

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=4.9e-28  Score=200.87  Aligned_cols=180  Identities=20%  Similarity=0.187  Sum_probs=132.6

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHhhccccccceeechhhhcccCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhh
Q psy15808         24 FHLIPPGTLTLILIQTLLYIMNVLAQPWDSLGICISAHTILNQRDYKRLVLSALEHGDDMHLYYNMVSLIVKGRELERMF  103 (275)
Q Consensus        24 ~~~~ppvT~~li~~~~~v~ll~~~~~~~~~~~l~~~~~~i~~~~q~wRllT~~f~H~~~~hll~N~~~l~~~g~~lE~~~  103 (275)
                      +.+.+|+|..++++|+++|++...............|....+++||||++|+.|+|.|+.|+++|++.++.+|..+|+.+
T Consensus         2 l~~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~   81 (189)
T d2nr9a1           2 LAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTF   81 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999766543333445555666677788999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHhhCCCceeEEEEeechhhH--HHH
Q psy15808        104 GSVQFVVLVSFLIISTSVCYVMLSYVIYLMNHDVTELYQCAIGFSAVLFSMKTIRTRQSPDVTHQLLNFSVPAVY--APW  181 (275)
Q Consensus       104 G~~~f~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~G~Sg~i~al~~~~~~~~p~~~~~l~~~~i~~~~--~~~  181 (275)
                      |+.+++.+|++++++++++.....             ....+|+||+++|++++.....+..+.. +.++.+...  ..+
T Consensus        82 G~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~vGaSG~v~gl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  147 (189)
T d2nr9a1          82 GSVKLLMLYVVASAITGYVQNYVS-------------GPAFFGLSGVVYAVLGYVFIRDKLNHHL-FDLPEGFFTMLLVG  147 (189)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHH-------------CSCCCCSHHHHHHHHHHHHHHHHSSTTS-CCCCCSSTTTTTTT
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhcC-------------CCCcccchHHHHHHHHHHHHHHHHhhhH-hccHHHHHHHHHHH
Confidence            999999999999999988753321             2357999999999997766544433221 111111111  111


Q ss_pred             H-HHHHHHHhCCchhHHHHHHHHHHHHHHHHHhhccc
Q psy15808        182 I-ELVIIHLMVPNASFKGHLSGILVGLCYTETSLGRL  217 (275)
Q Consensus       182 ~-~l~~~~~~~~~vs~~~hl~G~l~G~l~~~~~~~~l  217 (275)
                      + .........+++++.+|++|+++|.++++...|..
T Consensus       148 ~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~~~  184 (189)
T d2nr9a1         148 IALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLR  184 (189)
T ss_dssp             TTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHccc
Confidence            1 01111223468999999999999999999665443