Psyllid ID: psy15835

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVLENV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEEEccccEEEEEEEcccccccEEEEEEEEcEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccEEEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEcEEEEEcc
Coil and Loop (DISEMBL)
myqeflpdpelkfRNQVREKLERsdmikrrsvidipsFFVGSIlsvtsadkhdpnktrkFVGICIqkrycglrhEFVLRNVvdnlgavpctgdrhgpylsllgalgldpkivlenv
Flexible Loop (DISEMBL)
myqeflpdpelkfrnqvreklersdmikrrsvidipsffVGSILsvtsadkhdpnktrKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSllgalgldpkivlenv
Low Complexity Region (SEG)
MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVLENV
Disordered region (IsUnstruct)
***************************KRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVL***
Disordered Region (DISOPRED)
MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH*PNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVLE**
Disordered Region (DISEMBL)
MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVLENV
Disordered Region (DISPRO)
MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVLENV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKIVLENV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q9VHN6	306	39S ribosomal protein L19	yes	N/A	0.741	0.281	0.604	6e-26
Q95Y83	288	Probable 39S ribosomal pr	yes	N/A	0.948	0.381	0.441	2e-21
Q2HJI0	292	39S ribosomal protein L19	yes	N/A	0.655	0.260	0.460	2e-14
Q5R8M4	292	39S ribosomal protein L19	yes	N/A	0.689	0.273	0.467	2e-14
P49406	292	39S ribosomal protein L19	yes	N/A	0.689	0.273	0.467	3e-14
Q9D338	292	39S ribosomal protein L19	yes	N/A	0.655	0.260	0.473	6e-14

>sp|Q9VHN6|RM19_DROME 39S ribosomal protein L19, mitochondrial OS=Drosophila melanogaster GN=mRpL19 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +Y EFLPDP++++RN VREKLER DM+ RR  ID+P F+VGS+L+VTS+D H   KT +F
Sbjct: 65  VYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLPEFYVGSVLAVTSSDPHAAGKTSRF 124

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLG 86
           VGICI +  CGLR  F+LRNV+D+ G
Sbjct: 125 VGICINRDRCGLRARFILRNVIDHQG 150

Drosophila melanogaster (taxid: 7227)

>sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial OS=Caenorhabditis elegans GN=Y119C1B.4 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 75/111 (67%), Gaps = 1/111 (0%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +Y +FL  P    RN ++E+LER DM++RR  IDIP F+VGSI++VTS+DK+  +K  +F
Sbjct: 48  IYPDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRF 107

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
           VGICI++   GL H+F LRN ++N+G V    D + P +  +  L L+ ++
Sbjct: 108 VGICIRREKEGLLHQFTLRNTIENIG-VEVVYDLYNPTIKKIETLKLEKRL 157

Caenorhabditis elegans (taxid: 6239)

>sp|Q2HJI0|RM19_BOVIN 39S ribosomal protein L19, mitochondrial OS=Bos taurus GN=MRPL19 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 52/76 (68%)

Query: 15  NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRH 74
           N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   KT +F+GICIQ+   GL  
Sbjct: 88  NPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANGKTSQFLGICIQRSGKGLGA 147

Query: 75  EFVLRNVVDNLGAVPC 90
            F+LRN ++  G   C
Sbjct: 148 TFILRNTIEGQGVEIC 163

Bos taurus (taxid: 9913)

>sp|Q5R8M4|RM19_PONAB 39S ribosomal protein L19, mitochondrial OS=Pongo abelii GN=MRPL19 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 12/92 (13%)

Query: 4   EFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR 58
           EF+P     DP LKF      ++ER DM++RR V+ IP F+VGSIL VT+AD +   K  
Sbjct: 79  EFIPPRGRTDP-LKF------QMERKDMLERRKVLHIPEFYVGSILRVTTADPYASGKIS 131

Query: 59  KFVGICIQKRYCGLRHEFVLRNVVDNLGAVPC 90
           +F+GICIQ+   GL   F+LRNV++  G   C
Sbjct: 132 QFLGICIQRSGRGLGATFILRNVIEGQGVEIC 163

Pongo abelii (taxid: 9601)

>sp|P49406|RM19_HUMAN 39S ribosomal protein L19, mitochondrial OS=Homo sapiens GN=MRPL19 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 12/92 (13%)

Query: 4   EFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR 58
           EF+P     DP LKF      ++ER DM++RR V+ IP F+VGSIL VT+AD +   K  
Sbjct: 79  EFIPRRGRTDP-LKF------QIERKDMLERRKVLHIPEFYVGSILRVTTADPYASGKIS 131

Query: 59  KFVGICIQKRYCGLRHEFVLRNVVDNLGAVPC 90
           +F+GICIQ+   GL   F+LRNV++  G   C
Sbjct: 132 QFLGICIQRSGRGLGATFILRNVIEGQGVEIC 163

Homo sapiens (taxid: 9606)

>sp|Q9D338|RM19_MOUSE 39S ribosomal protein L19, mitochondrial OS=Mus musculus GN=Mrpl19 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query: 15  NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRH 74
           N ++ K+ER DM+ RR V+ IP F+VGSIL VT+AD +   KT +F+GICI++   GL  
Sbjct: 88  NPLKFKIERKDMLDRRKVLPIPEFYVGSILRVTTADPYASGKTSQFLGICIKRSGNGLGA 147

Query: 75  EFVLRNVVDNLGAVPC 90
            F LRN ++  G   C
Sbjct: 148 TFTLRNTIEGQGVEIC 163

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
58396608	310	AGAP001139-PA [Anopheles gambiae str. PE	0.948	0.354	0.531	8e-28
312385920	386	hypothetical protein AND_00165 [Anophele	0.939	0.282	0.527	8e-28
332376773	292	unknown [Dendroctonus ponderosae]	0.75	0.297	0.643	4e-27
157105510	318	39S ribosomal protein L19, mitochondrial	0.948	0.345	0.549	5e-27
357625940	304	hypothetical protein KGM_08549 [Danaus p	0.948	0.361	0.540	5e-27
91080579	277	PREDICTED: similar to 39S ribosomal prot	0.741	0.310	0.627	9e-26
270005517	289	hypothetical protein TcasGA2_TC007586 [T	0.741	0.297	0.627	1e-25
242020120	288	mitochondrial 50S ribosomal protein L19,	0.948	0.381	0.504	1e-25
322796252	144	hypothetical protein SINV_15401 [Solenop	0.741	0.597	0.651	1e-25
170055146	311	39S ribosomal protein L19, mitochondrial	0.948	0.353	0.522	1e-25

>gi|58396608|ref|XP_322023.2| AGAP001139-PA [Anopheles gambiae str. PEST] gi|55234194|gb|EAA01492.2| AGAP001139-PA [Anopheles gambiae str. PEST]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +YQEFLPDP++++RN VREKLER DM+ RR+ IDIP F+VGS+++VTS+D H  NKT +F
Sbjct: 69  VYQEFLPDPKVEWRNSVREKLERKDMLDRRANIDIPEFYVGSVVAVTSSDPHAENKTARF 128

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
           VGICI +  CGLR  F+LRNV+D+ G +  + D + P L  +  L L+ ++
Sbjct: 129 VGICILREKCGLRARFILRNVIDHQG-IEISYDLYDPTLQKIEVLRLEKRL 178

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385920|gb|EFR30308.1| hypothetical protein AND_00165 [Anopheles darlingi]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 84/110 (76%), Gaps = 1/110 (0%)

Query: 2   YQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFV 61
           YQEFLPDP++++RN +REKLER DM++RR+ IDIP F+VGS+L+VTS+D+H  NKT +FV
Sbjct: 146 YQEFLPDPKIEWRNSLREKLERKDMLERRANIDIPEFYVGSVLAVTSSDQHAENKTARFV 205

Query: 62  GICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
           GICI +   GLRH F+LRNV+D+  A+  + D + P +  +  L L+ ++
Sbjct: 206 GICILREKAGLRHRFILRNVIDH-QAIEVSYDLYDPTVHKIEVLRLEKRL 254

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376773|gb|AEE63526.1| unknown [Dendroctonus ponderosae]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 72/87 (82%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +Y EFLPDP+++FRN +REKLERSDM+ RR+ IDI  F+VGS+L+VTS+D+H P KT +F
Sbjct: 53  VYPEFLPDPKVEFRNVIREKLERSDMVARRTQIDIGEFYVGSVLAVTSSDRHAPGKTHRF 112

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLGA 87
           VGICIQ+  CGLR  F+LRNVVD+ G 
Sbjct: 113 VGICIQREGCGLRASFILRNVVDHQGV 139

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105510|ref|XP_001648902.1| 39S ribosomal protein L19, mitochondrial precursor [Aedes aegypti] gi|108880086|gb|EAT44311.1| AAEL004306-PA [Aedes aegypti]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 82/111 (73%), Gaps = 1/111 (0%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +YQEFLPDP+L++RN +REKLER DM+ RRS IDIP F+VGS+++VTS+D H   KT +F
Sbjct: 77  VYQEFLPDPKLEWRNPIREKLERMDMLDRRSNIDIPEFYVGSVVAVTSSDVHAVGKTSRF 136

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
           +GICI K  CGLR  F+LRNVVDN G +  + D + P L  +  L L+ ++
Sbjct: 137 LGICILKEKCGLRARFILRNVVDNQG-MEVSYDMYDPTLLKVEVLRLEKRL 186

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625940|gb|EHJ76212.1| hypothetical protein KGM_08549 [Danaus plexippus]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 81/111 (72%), Gaps = 1/111 (0%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +Y EFLPDP  KFRN +REKLER+DM+KRRS +DIP F+VG+IL+VT +D H   KT KF
Sbjct: 62  VYPEFLPDPNPKFRNSLREKLERADMLKRRSQVDIPEFYVGTILAVTISDPHAQGKTNKF 121

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
           VGICI+++ CGLR EF LRNV+D+ G +    D + P +  +  L L+ ++
Sbjct: 122 VGICIERKGCGLRAEFTLRNVIDHQG-IEVRYDLYDPTIQNIQVLRLEKRL 171

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080579|ref|XP_973524.1| PREDICTED: similar to 39S ribosomal protein L19, mitochondrial [Tribolium castaneum]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 70/86 (81%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +Y EFLPDP+++FRN +REKLERSDMI RR+ I+IP F+VGSIL+VT +D H P K  +F
Sbjct: 39  IYPEFLPDPKIEFRNPIREKLERSDMIARRANIEIPEFYVGSILAVTLSDPHTPGKFNRF 98

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLG 86
           VGICI++  CGLR  F+LRNV+D+ G
Sbjct: 99  VGICIKREGCGLRSTFILRNVIDHQG 124

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005517|gb|EFA01965.1| hypothetical protein TcasGA2_TC007586 [Tribolium castaneum]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 70/86 (81%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +Y EFLPDP+++FRN +REKLERSDMI RR+ I+IP F+VGSIL+VT +D H P K  +F
Sbjct: 51  IYPEFLPDPKIEFRNPIREKLERSDMIARRANIEIPEFYVGSILAVTLSDPHTPGKFNRF 110

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLG 86
           VGICI++  CGLR  F+LRNV+D+ G
Sbjct: 111 VGICIKREGCGLRSTFILRNVIDHQG 136

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020120|ref|XP_002430504.1| mitochondrial 50S ribosomal protein L19, putative [Pediculus humanus corporis] gi|212515661|gb|EEB17766.1| mitochondrial 50S ribosomal protein L19, putative [Pediculus humanus corporis]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 80/111 (72%), Gaps = 1/111 (0%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +YQ+FLP P +KFRN +REKLER DMI+RRS I+IP F+VG+I++VTS+++H   K  KF
Sbjct: 45  VYQDFLPSPIVKFRNPIREKLERRDMIRRRSAINIPEFYVGTIMAVTSSNEHASEKLTKF 104

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
           VGICI K + GLR +F+LRN+V+N G V      + P +  +  L L+ ++
Sbjct: 105 VGICIWKYFQGLRSKFILRNIVENTG-VEVLYSLYSPLIQKIEVLKLEKRL 154

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796252|gb|EFZ18828.1| hypothetical protein SINV_15401 [Solenopsis invicta]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           MY EFLPDP+ K+RN +REKLER DM+ RRS I IP F+VGSIL+VT ++ H P K  KF
Sbjct: 40  MYPEFLPDPDPKYRNALREKLERMDMLARRSHIAIPEFYVGSILAVTYSEPHAPGKVNKF 99

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLG 86
           VG+CIQ+  CGLR  F+LRNVVDN G
Sbjct: 100 VGLCIQREGCGLRSTFLLRNVVDNQG 125

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055146|ref|XP_001863451.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus] gi|167875195|gb|EDS38578.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 80/111 (72%), Gaps = 1/111 (0%)

Query: 1   MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
           +YQEFLPDP++++RN +REKLER DM+ RR+ IDIP F+VGS+++VT +D H   KT +F
Sbjct: 70  VYQEFLPDPKIEWRNPIREKLERMDMLDRRANIDIPEFYVGSVVAVTCSDVHAVGKTSRF 129

Query: 61  VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
           +GICI +  CGLR  F+LRNVVDN G V    D + P L  +  L L+ ++
Sbjct: 130 LGICILREKCGLRARFILRNVVDNQG-VEVMYDMYDPTLLKVEVLRLEKRL 179

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0037608	306	mRpL19 "mitochondrial ribosoma	0.948	0.359	0.495	2.2e-25
WB|WBGene00022470	288	mrpl-19 [Caenorhabditis elegan	0.948	0.381	0.441	3.9e-21
UNIPROTKB|F1NEW6	253	MRPL19 "Uncharacterized protei	0.905	0.415	0.425	1.1e-16
ZFIN|ZDB-GENE-040801-55	291	mrpl19 "mitochondrial ribosoma	0.905	0.360	0.398	7.7e-16
UNIPROTKB|I3LNJ0	292	MRPL19 "Uncharacterized protei	0.905	0.359	0.379	1.3e-15
UNIPROTKB|F1MMM8	292	MRPL19 "39S ribosomal protein	0.905	0.359	0.379	1.6e-15
UNIPROTKB|Q2HJI0	292	MRPL19 "39S ribosomal protein	0.905	0.359	0.379	1.6e-15
UNIPROTKB|E2R077	292	MRPL19 "Uncharacterized protei	0.905	0.359	0.370	2.6e-15
MGI|MGI:1926274	292	Mrpl19 "mitochondrial ribosoma	0.905	0.359	0.388	3.3e-15
RGD|1587381	292	Mrpl19 "mitochondrial ribosoma	0.905	0.359	0.379	9.8e-15

FB|FBgn0037608 mRpL19 "mitochondrial ribosomal protein L19" [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 55/111 (49%), Positives = 79/111 (71%)

Query:     1 MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
             +Y EFLPDP++++RN VREKLER DM+ RR  ID+P F+VGS+L+VTS+D H   KT +F
Sbjct:    65 VYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLPEFYVGSVLAVTSSDPHAAGKTSRF 124

Query:    61 VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             VGICI +  CGLR  F+LRNV+D+ G +    + + P +  +  L L+ ++
Sbjct:   125 VGICINRDRCGLRARFILRNVIDHQG-MEVVYELYDPTILKIEVLRLEKRL 174

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

WB|WBGene00022470 mrpl-19 [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 49/111 (44%), Positives = 75/111 (67%)

Query:     1 MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 60
             +Y +FL  P    RN ++E+LER DM++RR  IDIP F+VGSI++VTS+DK+  +K  +F
Sbjct:    48 IYPDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRF 107

Query:    61 VGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             VGICI++   GL H+F LRN ++N+G V    D + P +  +  L L+ ++
Sbjct:   108 VGICIRREKEGLLHQFTLRNTIENIG-VEVVYDLYNPTIKKIETLKLEKRL 157

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|F1NEW6 MRPL19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 46/108 (42%), Positives = 70/108 (64%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  + ++  +ER DMI+RR V +IP F+VGSIL+VT+AD +   KT +FVGI
Sbjct:    42 EFIP-PRGR-TDPLKFYMERKDMIQRRKVFNIPEFYVGSILAVTTADPYADGKTNRFVGI 99

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             CIQ+   GL   FVLRNV+++ G   C  + + P +  +  L L+ ++
Sbjct:   100 CIQRGGRGLGATFVLRNVIEDQGVEICY-ELYSPRIQEITVLKLEKRL 146

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-55 mrpl19 "mitochondrial ribosomal protein L19" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 43/108 (39%), Positives = 65/108 (60%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  +Q++  +ER DMI+RR V+ IP F+VGSIL+VT  D +      +FVGI
Sbjct:    78 EFIP-PRQR-TDQIKFYIERKDMIQRRKVLQIPEFYVGSILAVTMTDPYASGNLNRFVGI 135

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             C Q+   GL   F+LRNV+D  G   C  + + P +  +  L L+ ++
Sbjct:   136 CTQRSGKGLGATFILRNVIDGQGVEICY-ELYSPRMRKIEVLKLEKRL 182

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|I3LNJ0 MRPL19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/108 (37%), Positives = 68/108 (62%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   KT +F+GI
Sbjct:    79 EFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYASAKTSQFLGI 136

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             CIQ+   GL   F+LRN ++  G   C  + + P +  +  + L+ ++
Sbjct:   137 CIQRSGSGLGATFILRNTIEGQGVEICF-ELYNPRIQEIQVVKLEKRL 183

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1MMM8 MRPL19 "39S ribosomal protein L19, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 41/108 (37%), Positives = 68/108 (62%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   KT +F+GI
Sbjct:    79 EFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANGKTSQFLGI 136

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             CIQ+   GL   F+LRN ++  G   C  + + P +  +  + L+ ++
Sbjct:   137 CIQRSGKGLGATFILRNTIEGQGVEICF-ELYNPRIQEIQVVKLEKRL 183

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q2HJI0 MRPL19 "39S ribosomal protein L19, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 41/108 (37%), Positives = 68/108 (62%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   KT +F+GI
Sbjct:    79 EFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANGKTSQFLGI 136

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             CIQ+   GL   F+LRN ++  G   C  + + P +  +  + L+ ++
Sbjct:   137 CIQRSGKGLGATFILRNTIEGQGVEICF-ELYNPRIQEIQVVKLEKRL 183

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R077 MRPL19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 40/108 (37%), Positives = 67/108 (62%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   K  +F+GI
Sbjct:    79 EFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADLYANGKASQFLGI 136

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             CIQ+   GL   F+LRN ++  G   C  + + P +  +  + L+ ++
Sbjct:   137 CIQRSGAGLGATFILRNTIEGQGVEICF-ELYNPRIQEIQVIKLEKRL 183

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1926274 Mrpl19 "mitochondrial ribosomal protein L19" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 42/108 (38%), Positives = 66/108 (61%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  N ++ K+ER DM+ RR V+ IP F+VGSIL VT+AD +   KT +F+GI
Sbjct:    79 EFIP-PRGR-TNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVTTADPYASGKTSQFLGI 136

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             CI++   GL   F LRN ++  G   C  + + P +  +  + L+ ++
Sbjct:   137 CIKRSGNGLGATFTLRNTIEGQGVEICF-ELYNPRIQEIQVVKLEKRL 183

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031965 "nuclear membrane" evidence=ISO

RGD|1587381 Mrpl19 "mitochondrial ribosomal protein L19" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 9.8e-15, P = 9.8e-15
 Identities = 41/108 (37%), Positives = 66/108 (61%)

Query:     4 EFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGI 63
             EF+P P  +  N ++ ++ER DM+ RR V+ IP F+VGSIL VT+AD +   KT +F+GI
Sbjct:    79 EFIP-PRGR-TNPLKFQIERRDMLDRRKVLPIPEFYVGSILRVTTADPYASGKTSQFLGI 136

Query:    64 CIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLDPKI 111
             CI++   GL   F LRN ++  G   C  + + P +  +  + L+ ++
Sbjct:   137 CIKRSGSGLGATFTLRNTIEGQGVEICF-ELYNPRIHEIQVVKLEKRL 183

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VHN6	RM19_DROME	No assigned EC number	0.6046	0.7413	0.2810	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	1e-07

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGL 72
            + +++E   + K     D+P F VG  + V    K + NK R   F G+ I KR  GL
Sbjct: 1  MNLIKEIEAEQLKK-----DLPEFRVGDTVKVHVKIK-EGNKERIQVFEGVVIAKRGRGL 54

Query: 73 RHEFVLRNVVDNLG 86
             F +R +   +G
Sbjct: 55 NSTFTVRKISQGVG 68

Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
CHL00084	117	rpl19 ribosomal protein L19	100.0
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	100.0
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	100.0
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	100.0
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	100.0
KOG1698|consensus	201		99.97
PF05641	68	Agenet: Agenet domain; InterPro: IPR008395 This do	89.96
smart00743	61	Agenet Tudor-like domain present in plant sequence	81.28

>CHL00084 rpl19 ribosomal protein L19

Probab=100.00  E-value=2.5e-34  Score=208.32  Aligned_cols=89  Identities=20%  Similarity=0.324  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEc
Q psy15835         14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTG   92 (116)
Q Consensus        14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~   92 (116)
                      ++++++.+|.+++     +.++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| 
T Consensus         4 ~~~~i~~~~~~~~-----~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~f-   77 (117)
T CHL00084          4 LQQLVKEIESEFL-----KKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVF-   77 (117)
T ss_pred             HHHHHHHHHHHHh-----hcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEE-
Confidence            5779999999999     458999999999999999997 679999999999999999999999999999999999999 


Q ss_pred             cccCCCcceEEEeecC
Q psy15835         93 DRHGPYLSLLGALGLD  108 (116)
Q Consensus        93 pl~SP~I~~IeVl~~~  108 (116)
                      |+|||.|++|+|+++.
T Consensus        78 pl~SP~I~~IeV~r~g   93 (117)
T CHL00084         78 LLHSPKLASIEVLRRS   93 (117)
T ss_pred             ecCCCccceEEEEEeC
Confidence            9999999999999864

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.7e-34  Score=205.39  Aligned_cols=88  Identities=27%  Similarity=0.437  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEcc
Q psy15835         15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGD   93 (116)
Q Consensus        15 ~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~p   93 (116)
                      |+||+.+|++++     +.++|+|++||+|+|++.+.| +++|+|.|+|+||+++++|++|||||||+++|+|||++| |
T Consensus         1 ~~~i~~~e~~~~-----~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f-~   74 (113)
T PF01245_consen    1 MNLIEEVEREQI-----KKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVF-P   74 (113)
T ss_dssp             -HHHHHHHHTTC-----SSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEE-E
T ss_pred             ChHHHHHHHHHh-----hcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEE-E
Confidence            689999999999     569999999999999999996 789999999999999999999999999999999999999 9


Q ss_pred             ccCCCcceEEEeecC
Q psy15835         94 RHGPYLSLLGALGLD  108 (116)
Q Consensus        94 l~SP~I~~IeVl~~~  108 (116)
                      +|||.|++|+|+++.
T Consensus        75 l~SP~I~~IeV~~~~   89 (113)
T PF01245_consen   75 LYSPLIKSIEVLRRG   89 (113)
T ss_dssp             TTSTTEEEEEEEEEB
T ss_pred             cCCCCeEEEEEEEec
Confidence            999999999999864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=100.00  E-value=3.1e-34  Score=207.51  Aligned_cols=88  Identities=20%  Similarity=0.361  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEcc
Q psy15835         15 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGD   93 (116)
Q Consensus        15 ~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~p   93 (116)
                      +++|+.+|++++     +.++|+|++||+|+|++++.+ +++|+|.|+|+||+++|+|+++||||||+++|+|||++| |
T Consensus         1 ~~~i~~~~~~~~-----~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~f-p   74 (116)
T PRK05338          1 MNLIKEIEAEQL-----RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTF-P   74 (116)
T ss_pred             CcHHHHHHHHHh-----hcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEe-c
Confidence            358999999999     458999999999999999997 789999999999999999999999999999999999999 9


Q ss_pred             ccCCCcceEEEeecC
Q psy15835         94 RHGPYLSLLGALGLD  108 (116)
Q Consensus        94 l~SP~I~~IeVl~~~  108 (116)
                      +|||.|++|+|+++.
T Consensus        75 l~SP~I~~IeV~r~g   89 (116)
T PRK05338         75 LHSPRIDSIEVVRRG   89 (116)
T ss_pred             CCCCcccEEEEEEec
Confidence            999999999999763

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=100.00  E-value=3.9e-34  Score=206.22  Aligned_cols=87  Identities=20%  Similarity=0.376  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccc
Q psy15835         16 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDR   94 (116)
Q Consensus        16 ~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl   94 (116)
                      ++|+.+|++++     +.++|+|++||+|+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| |+
T Consensus         2 ~~i~~~e~~~~-----~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~f-pl   75 (113)
T TIGR01024         2 NLIKQIEQEQL-----KKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIF-PL   75 (113)
T ss_pred             cHHHHHHHHHh-----hcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEE-Ec
Confidence            58999999999     568999999999999999998 789999999999999999999999999999999999999 99


Q ss_pred             cCCCcceEEEeecC
Q psy15835         95 HGPYLSLLGALGLD  108 (116)
Q Consensus        95 ~SP~I~~IeVl~~~  108 (116)
                      |||.|++|+|+.+.
T Consensus        76 ~SP~I~~IeVl~~~   89 (113)
T TIGR01024        76 HSPNIDSIEVVRRG   89 (113)
T ss_pred             CCCccceEEEEEeC
Confidence            99999999999764

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.2e-34  Score=205.39  Aligned_cols=86  Identities=23%  Similarity=0.415  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccc
Q psy15835         16 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDR   94 (116)
Q Consensus        16 ~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl   94 (116)
                      .+|+.||++|+.+     ++|+|+|||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| |+
T Consensus         4 ~~i~~le~~q~~~-----~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~F-p~   77 (115)
T COG0335           4 PIIQQLEQEQIKK-----DIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVF-PL   77 (115)
T ss_pred             HHHHHHHHHHHHh-----hCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEe-ec
Confidence            5999999999954     7999999999999999997 789999999999999999999999999999999999999 99


Q ss_pred             cCCCcceEEEeec
Q psy15835         95 HGPYLSLLGALGL  107 (116)
Q Consensus        95 ~SP~I~~IeVl~~  107 (116)
                      |||.|++|+|+++
T Consensus        78 ~SP~Ie~IeV~rr   90 (115)
T COG0335          78 HSPLIESIEVVRR   90 (115)
T ss_pred             CCCceeEEEEEec
Confidence            9999999999976

>KOG1698|consensus

Probab=99.97  E-value=6.2e-31  Score=204.46  Aligned_cols=104  Identities=39%  Similarity=0.674  Sum_probs=98.3

Q ss_pred             CCCCCCCccchhhHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeee
Q psy15835          2 YQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNV   81 (116)
Q Consensus         2 ~~~~~p~~~~~~~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni   81 (116)
                      |++|.|.+..  ..++++.||+++|+.++..+++|+|++||+|+|++.+++++.++.+|.|+||+++|+|+++||+|||+
T Consensus        63 ~~~f~~~~~~--~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~R~~~Gl~atf~LRnv  140 (201)
T KOG1698|consen   63 YPEFLPLRKV--AKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIRRRNAGLNATFLLRNV  140 (201)
T ss_pred             CcccccchhH--HHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEEecccCCcceEEeeeh
Confidence            6778877766  55699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeeeEEEccccCCCcceEEEeecC
Q psy15835         82 VDNLGAVPCTGDRHGPYLSLLGALGLD  108 (116)
Q Consensus        82 ~~gvGVEr~f~pl~SP~I~~IeVl~~~  108 (116)
                      +.|+|||.+| |||||+|++|+|+...
T Consensus       141 IagvGVEi~~-pLYsP~IkeI~Vlk~~  166 (201)
T KOG1698|consen  141 IAGVGVEIVF-PLYSPNIKEIKVLKLE  166 (201)
T ss_pred             hhCceeEEEE-eccCCCeeEEEEechh
Confidence            9999999999 9999999999999753

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []

Probab=89.96  E-value=1.4  Score=28.34  Aligned_cols=38  Identities=16%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             cCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEee
Q psy15835         38 FFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRN   80 (116)
Q Consensus        38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRn   80 (116)
                      |++||.|+|....  +.-+..=|.|+|++..+.+   +|.|+-
T Consensus         1 F~~G~~VEV~s~e--~g~~gaWf~a~V~~~~~~~---~~~V~Y   38 (68)
T PF05641_consen    1 FKKGDEVEVSSDE--DGFRGAWFPATVLKENGDD---KYLVEY   38 (68)
T ss_dssp             --TT-EEEEEE-S--BTT--EEEEEEEEEEETT----EEEEEE
T ss_pred             CCCCCEEEEEEcC--CCCCcEEEEEEEEEeCCCc---EEEEEE
Confidence            7899999998644  3347889999999999887   777775

The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=81.28  E-value=10  Score=23.24  Aligned_cols=47  Identities=11%  Similarity=0.139  Sum_probs=35.2

Q ss_pred             CcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEE
Q psy15835         37 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCT   91 (116)
Q Consensus        37 ~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f   91 (116)
                      .|++||.|.+.+..     .-.=|.|+|++..+   +..|.|+=...+.|-+.++
T Consensus         2 ~~~~G~~Ve~~~~~-----~~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v   48 (61)
T smart00743        2 DFKKGDRVEVFSKE-----EDSWWEAVVTKVLG---DGKYLVRYLTESEPLKETV   48 (61)
T ss_pred             CcCCCCEEEEEECC-----CCEEEEEEEEEECC---CCEEEEEECCCCcccEEEE
Confidence            58999999999864     23577899999877   4468887765457766666

Domain in plant sequences with possible chromatin-associated functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
2ftc_K	98	Structural Model For The Large Subunit Of The Mamma		2e-10

>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPC 90
          IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G   C
Sbjct: 1  IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEIC 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	5e-12

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score = 56.5 bits (137), Expect = 5e-12
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLG 86
          IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G
Sbjct: 1  IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQG 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	100.0
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	100.0
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	100.0
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	100.0
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	99.97
2zzd_A	126	Thiocyanate hydrolase subunit alpha; scnase, cobal	82.15

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=100.00  E-value=1.3e-36  Score=218.31  Aligned_cols=86  Identities=23%  Similarity=0.386  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccc
Q psy15835         16 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDR   94 (116)
Q Consensus        16 ~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl   94 (116)
                      ++|+.+|++||     +.++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| |+
T Consensus         2 ~~i~~~e~~~~-----~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~f-pl   75 (114)
T 3r8s_P            2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVF-QT   75 (114)
T ss_dssp             CHHHHHHGGGC-----CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEE-ET
T ss_pred             hHHHHHHHHHh-----ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEE-ec
Confidence            58999999999     569999999999999999997 789999999999999999999999999999999999999 99


Q ss_pred             cCCCcceEEEeec
Q psy15835         95 HGPYLSLLGALGL  107 (116)
Q Consensus        95 ~SP~I~~IeVl~~  107 (116)
                      |||.|++|||+++
T Consensus        76 ~SP~I~~IeV~r~   88 (114)
T 3r8s_P           76 HSPVVDSISVKRR   88 (114)
T ss_dssp             TCTTEEEEEEEEC
T ss_pred             CCCccceEEEEEc
Confidence            9999999999986

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=100.00  E-value=8.7e-36  Score=221.52  Aligned_cols=88  Identities=23%  Similarity=0.370  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEc
Q psy15835         14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTG   92 (116)
Q Consensus        14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~   92 (116)
                      |++||+.+|.++|     +.++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| 
T Consensus         3 ~~~li~~ie~~~~-----~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~F-   76 (146)
T 3v2d_T            3 RGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIF-   76 (146)
T ss_dssp             HHHHHHHHHHTTC-----CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEE-
T ss_pred             HHHHHHHHHHHHh-----hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEE-
Confidence            5789999999999     569999999999999999987 789999999999999999999999999999999999999 


Q ss_pred             cccCCCcceEEEeec
Q psy15835         93 DRHGPYLSLLGALGL  107 (116)
Q Consensus        93 pl~SP~I~~IeVl~~  107 (116)
                      |+|||.|++|||+++
T Consensus        77 pl~SP~I~~IeVvrr   91 (146)
T 3v2d_T           77 PLHSPLIQKIDIVQR   91 (146)
T ss_dssp             ETTCTTEEEEEEEEC
T ss_pred             ecCCCccceEEEEec
Confidence            999999999999986

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=100.00  E-value=8.9e-37  Score=230.81  Aligned_cols=93  Identities=14%  Similarity=0.229  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEc
Q psy15835         14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTG   92 (116)
Q Consensus        14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~   92 (116)
                      ++++|+.||++||.+. ...++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| 
T Consensus         4 ~M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~F-   81 (166)
T 2zjr_M            4 HIKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF-   81 (166)
T ss_dssp             CCCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEE-
T ss_pred             HHHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEE-
Confidence            4569999999999644 4679999999999999999987 789999999999999999999999999999999999999 


Q ss_pred             cccCCCcceEEEeecC
Q psy15835         93 DRHGPYLSLLGALGLD  108 (116)
Q Consensus        93 pl~SP~I~~IeVl~~~  108 (116)
                      |+|||.|++|||+++-
T Consensus        82 plhSP~I~kIEVvrrG   97 (166)
T 2zjr_M           82 PFASPLVNQVTIVERG   97 (166)
T ss_dssp             ETTCTTEEEEEEEECC
T ss_pred             ecCCCccceEEEEecc
Confidence            9999999999999873

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=1e-33  Score=198.81  Aligned_cols=73  Identities=41%  Similarity=0.720  Sum_probs=71.0

Q ss_pred             CCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccccCCCcceEEEeecC
Q psy15835         35 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDRHGPYLSLLGALGLD  108 (116)
Q Consensus        35 iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl~SP~I~~IeVl~~~  108 (116)
                      +|+|++||||+|++++.++++|+|.|+|+||+++|+|+++||||||+++|+|||++| |+|||.|++|||+++.
T Consensus         1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~f-pl~SP~I~~IeV~r~g   73 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICF-ELYNPRVQEIQVVKLE   73 (98)
T ss_pred             CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEE-ecCCCceeEEEEEEcC
Confidence            699999999999999999999999999999999999999999999999999999999 9999999999999864

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.97  E-value=3.3e-34  Score=225.55  Aligned_cols=94  Identities=12%  Similarity=0.261  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEcc
Q psy15835         14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGD   93 (116)
Q Consensus        14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~p   93 (116)
                      ..++|+.|+++++++...+.++|+|++||||+|++++.|+++|+|.|+|+||+++|+|+++||||||+++|+|||++| |
T Consensus       119 ~~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~F-p  197 (233)
T 3bbo_R          119 LGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVF-P  197 (233)
T ss_dssp             --CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCC-C
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEE-e
Confidence            446888888888888777889999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             ccCCCcceEEEeecC
Q psy15835         94 RHGPYLSLLGALGLD  108 (116)
Q Consensus        94 l~SP~I~~IeVl~~~  108 (116)
                      +|||.|++|||+++-
T Consensus       198 LhSP~I~kIEVvRrg  212 (233)
T 3bbo_R          198 LYSPNIKEIKVVSHR  212 (233)
T ss_dssp             CBSSSSSCCCCCCCS
T ss_pred             cCCCccceEEEEecc
Confidence            999999999999863

>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*

Probab=82.15  E-value=0.43  Score=34.29  Aligned_cols=61  Identities=13%  Similarity=0.146  Sum_probs=41.8

Q ss_pred             ccchhhHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecCCCceeeeEE----EEEEEEec
Q psy15835          9 PELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFV----GICIQKRY   69 (116)
Q Consensus         9 ~~~~~~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e~k~r~q~F~----Gv~Ia~r~   69 (116)
                      |+|.|-.+.+...-+-+=..|.....-|.|.+||.|+|.-....+-.|...|.    |+|.+..+
T Consensus         8 ~~~~~~~~~~~a~~~G~p~~R~~~~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G   72 (126)
T 2zzd_A            8 PVWDRTHHAKMATGIGDPQCFKGMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY   72 (126)
T ss_dssp             CCCCSSHHHHHHTTTCTTGGGTTTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred             cccccchhhhhhcccCCCcccCCCCCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEec
Confidence            56666666666655554444434445689999999999866666778887774    88877663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	1e-08
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	2e-08
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	8e-06

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 47.1 bits (112), Expect = 1e-08
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 20 KLERSDMIK---RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHE 75
          K+ R ++++   +     +P F  G  + V +  +  +  +++ F G+ I     G R  
Sbjct: 5  KINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 64

Query: 76 FVLRNVVDNLG 86
          F +R +    G
Sbjct: 65 FTVRKISFGEG 75

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGL 72
          R  + + +E   +       D+P F  G  + V+   K     + + F GI I+ R  G 
Sbjct: 3  RGALIKLVESRYVRT-----DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF 57

Query: 73 RHEFVLRNVVDNLG 86
             F +R V   +G
Sbjct: 58 NTTFTVRKVSYGVG 71

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (92), Expect = 8e-06
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 19 EKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFV 77
          ++LE+  M +     D+PSF  G  + V     +    + + F G+ I  R  GL   F 
Sbjct: 5  KQLEQEQMKQ-----DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFT 59

Query: 78 LRNVVDNLG 86
          +R + +  G
Sbjct: 60 VRKISNGEG 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	100.0
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	100.0
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	99.97
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	90.31

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.2e-36  Score=213.72  Aligned_cols=88  Identities=17%  Similarity=0.314  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEc
Q psy15835         14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTG   92 (116)
Q Consensus        14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~   92 (116)
                      +++||+.+|++++      +++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| 
T Consensus         8 ~~~li~~ie~~~~------k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~f-   80 (108)
T d2zjrm1           8 RGELLRGIEQDHT------RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF-   80 (108)
T ss_dssp             HHHHHHHTTGGGC------CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEE-
T ss_pred             HHHHHHHHHHHhC------cCCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEE-
Confidence            6899999999886      27999999999999999998 678999999999999999999999999999999999999 


Q ss_pred             cccCCCcceEEEeecC
Q psy15835         93 DRHGPYLSLLGALGLD  108 (116)
Q Consensus        93 pl~SP~I~~IeVl~~~  108 (116)
                      |+|||+|++|+|+++.
T Consensus        81 pl~SP~i~~IeV~r~~   96 (108)
T d2zjrm1          81 PFASPLVNQVTIVERG   96 (108)
T ss_dssp             ETTCTTEEEEEEEECC
T ss_pred             EcCCCCccEEEEEEec
Confidence            9999999999999874

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-34  Score=211.44  Aligned_cols=89  Identities=22%  Similarity=0.366  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEc
Q psy15835         14 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTG   92 (116)
Q Consensus        14 ~~~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~   92 (116)
                      ++.||+.+|.+++     +.++|+|++||||+|++.+.| +++|+|.|+|+||+++++|+++||||||+++|+|||++| 
T Consensus         3 ~~~Li~~iE~~~~-----k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~f-   76 (138)
T d2j01t1           3 RGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIF-   76 (138)
T ss_dssp             THHHHHHHHCCCC-----CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEE-
T ss_pred             HHHHHHHHHHHhh-----cccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEE-
Confidence            4689999999998     568999999999999999997 778999999999999999999999999999999999999 


Q ss_pred             cccCCCcceEEEeecC
Q psy15835         93 DRHGPYLSLLGALGLD  108 (116)
Q Consensus        93 pl~SP~I~~IeVl~~~  108 (116)
                      |||||+|++|+|+++.
T Consensus        77 pl~SP~I~~IeVvr~g   92 (138)
T d2j01t1          77 PLHSPLIQKIDIVQRG   92 (138)
T ss_dssp             CSSSSCSCCCBCCCCB
T ss_pred             eccCCCccceEEeecC
Confidence            9999999999999763

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.5e-36  Score=215.15  Aligned_cols=87  Identities=23%  Similarity=0.382  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCcCCCCEEEEEEEecC-CCceeeeEEEEEEEEecCCCceeEEEeeecCCeeeeEEEccc
Q psy15835         16 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGAVPCTGDR   94 (116)
Q Consensus        16 ~li~~ler~~~~~r~~~~~iP~f~~GD~v~V~~~i~e-~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~gvGVEr~f~pl   94 (116)
                      +||+.+|++|+     +.++|+|++||||+|++++.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++| ||
T Consensus         2 nli~~ie~~q~-----k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~f-pl   75 (114)
T d2gycn1           2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVF-QT   75 (114)
T ss_dssp             CTTTSSSSSTT-----CCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCC-CC
T ss_pred             hHHHHHHHHHh-----hccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEE-Ee
Confidence            57888999998     459999999999999999987 789999999999999999999999999999999999999 99


Q ss_pred             cCCCcceEEEeecC
Q psy15835         95 HGPYLSLLGALGLD  108 (116)
Q Consensus        95 ~SP~I~~IeVl~~~  108 (116)
                      |||+|++|||+++.
T Consensus        76 ~SP~I~~IeV~~~~   89 (114)
T d2gycn1          76 HSPVVDSISVKRRG   89 (114)
T ss_dssp             CSSCTTCCCCCCCS
T ss_pred             CCCCcceeEEeccC
Confidence            99999999999864

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=90.31  E-value=0.12  Score=32.45  Aligned_cols=60  Identities=13%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             cCCCCEEEEEEEecCCCceeeeEEEEEEEEecCCCceeEEEeeecCC--eeeeEEEccccCCCcceEEEeecC
Q psy15835         38 FFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN--LGAVPCTGDRHGPYLSLLGALGLD  108 (116)
Q Consensus        38 f~~GD~v~V~~~i~e~k~r~q~F~Gv~Ia~r~~Gl~stFtlRni~~g--vGVEr~f~pl~SP~I~~IeVl~~~  108 (116)
                      +.+||.|+|......+   -..|+|+++-....+-...++|. ..+|  +|+..       -.|++||++.+-
T Consensus        11 ~~~GD~Vri~~~~~~~---~~~~eGilmP~~e~s~~~~ivlK-L~nGYNiGi~~-------~~i~~ievlek~   72 (74)
T d1zq1a1          11 INVGDFVRITKEEDGE---EVTYEGYIMPPYELSAGDTLVLK-LENGYNIGIAL-------EKIRRIEVLERA   72 (74)
T ss_dssp             CCTTCEEEEEEESSSS---EEECCEEECCCCTTCCCSEEEEE-ETTSCEEEEEG-------GGEEEEEEEECC
T ss_pred             CCCCCEEEEEEecCCC---ceEEEEEEcCCcccCCCCEEEEE-ecCceeeccch-------hHeeEEEEEeec
Confidence            4699999998655322   34899999987655445555554 3444  44432       357788888753