Psyllid ID: psy15872

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MSSYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETALT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccHHHHccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccHHHHHHHHHHHHHHHccccHHccEEEHEEEHHHcccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSSYDIEINAhsdrcqhgyICIGAGVFAAWEEwsfldgayfcfvtlstigfgdlvpgksfqrtdtqIDIVIEIsvrptlgvrpryatgdqeetalt
Flexible Loop (DISEMBL)
MSSYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKsfqrtdtqidivieisvrptlgvrpryatgdqeetalt
Low Complexity Region (SEG)
MSSYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETALT
Disordered region (IsUnstruct)
******EINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVR**************
Disordered Region (DISOPRED)
**SYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGD**E****
Disordered Region (DISEMBL)
MSSYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYA**********
Disordered Region (DISPRO)
*SSYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEET*L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSYDIEINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPTLGVRPRYATGDQEETALT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q63ZI0	374	Potassium channel subfami	N/A	N/A	0.395	0.101	0.605	2e-09
Q9JL58	365	Potassium channel subfami	yes	N/A	0.437	0.115	0.571	9e-09
Q9NPC2	374	Potassium channel subfami	yes	N/A	0.395	0.101	0.605	9e-09
Q9ES08	396	Potassium channel subfami	no	N/A	0.437	0.106	0.523	3e-08
Q3LS21	402	Potassium channel subfami	yes	N/A	0.395	0.094	0.552	4e-08
O14649	394	Potassium channel subfami	no	N/A	0.437	0.106	0.470	5e-08
O35111	409	Potassium channel subfami	no	N/A	0.531	0.124	0.470	6e-08
O54912	411	Potassium channel subfami	no	N/A	0.531	0.124	0.470	6e-08
Q9Y257	313	Potassium channel subfami	no	N/A	0.395	0.121	0.615	2e-07
Q9Z2T2	336	Potassium channel subfami	no	N/A	0.458	0.130	0.488	9e-07

>sp|Q63ZI0|KCNK9_XENLA Potassium channel subfamily K member 9 OS=Xenopus laevis GN=kcnk9 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLV 55
           G +CIGA  F+ +EEWSF    Y+CF+TL+TIGFGD V
Sbjct: 169 GTLCIGAAAFSHYEEWSFFQAYYYCFITLTTIGFGDYV 206

pH-dependent, voltage-insensitive, background potassium channel protein.
Xenopus laevis (taxid: 8355)

>sp|Q9JL58|KCNK9_CAVPO Potassium channel subfamily K member 9 OS=Cavia porcellus GN=KCNK9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKS 59
           G +CIGA  F+  EEWSF    Y+CF+TL+TIGFGD V  +S
Sbjct: 169 GTLCIGAAAFSQCEEWSFFHAYYYCFITLTTIGFGDYVALQS 210

pH-dependent, voltage-insensitive, background potassium channel protein.

Cavia porcellus (taxid: 10141)

>sp|Q9NPC2|KCNK9_HUMAN Potassium channel subfamily K member 9 OS=Homo sapiens GN=KCNK9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/38 (60%), Positives = 28/38 (73%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLV 55
           G +CIGA  F+  EEWSF    Y+CF+TL+TIGFGD V
Sbjct: 169 GTLCIGAAAFSQCEEWSFFHAYYYCFITLTTIGFGDYV 206

pH-dependent, voltage-insensitive, background potassium channel protein.

Homo sapiens (taxid: 9606)

>sp|Q9ES08|KCNK9_RAT Potassium channel subfamily K member 9 OS=Rattus norvegicus GN=Kcnk9 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 30/42 (71%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKS 59
           G +C+GA  F+  E+WSF    Y+CF+TL+TIGFGD V  +S
Sbjct: 169 GTLCLGAAAFSQCEDWSFFHAYYYCFITLTTIGFGDFVALQS 210

pH-dependent, voltage-insensitive, background potassium channel protein.

Rattus norvegicus (taxid: 10116)

>sp|Q3LS21|KCNK9_MOUSE Potassium channel subfamily K member 9 OS=Mus musculus GN=Kcnk9 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLV 55
           G +C+GA  F+  E+WSF    Y+CF+TL+TIGFGD V
Sbjct: 169 GTLCLGAAAFSQCEDWSFFHAYYYCFITLTTIGFGDFV 206

pH-dependent, voltage-insensitive, background potassium channel protein.

Mus musculus (taxid: 10090)

>sp|O14649|KCNK3_HUMAN Potassium channel subfamily K member 3 OS=Homo sapiens GN=KCNK3 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 20  ICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIV 70
           +CIGA  F+ +E W+F    Y+CF+TL+TIGFGD V  +  Q   TQ   V
Sbjct: 171 LCIGAAAFSHYEHWTFFQAYYYCFITLTTIGFGDYVALQKDQALQTQPQYV 221

pH-dependent, voltage-insensitive, background potassium channel protein. Rectification direction results from potassium ion concentration on either side of the membrane. Acts as an outward rectifier when external potassium concentration is low. When external potassium concentration is high, current is inward.

Homo sapiens (taxid: 9606)

>sp|O35111|KCNK3_MOUSE Potassium channel subfamily K member 3 OS=Mus musculus GN=Kcnk3 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 20  ICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIV 70
           +CIGA  F+ +E W+F    Y+CF+TL+TIGFGD V  +  Q   TQ   V
Sbjct: 171 LCIGAAAFSYYERWTFFQAYYYCFITLTTIGFGDYVALQKDQALQTQPQYV 221

pH-dependent, voltage-insensitive, background potassium channel protein. Rectification direction results from potassium ion concentration on either side of the membrane. Acts as an outward rectifier when external potassium concentration is low. When external potassium concentration is high, current is inward.

Mus musculus (taxid: 10090)

>sp|O54912|KCNK3_RAT Potassium channel subfamily K member 3 OS=Rattus norvegicus GN=Kcnk3 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 20  ICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIV 70
           +CIGA  F+ +E W+F    Y+CF+TL+TIGFGD V  +  Q   TQ   V
Sbjct: 171 LCIGAAAFSYYERWTFFQAYYYCFITLTTIGFGDYVALQKDQALQTQPQYV 221

pH-dependent, voltage-insensitive, background potassium channel protein. Rectification direction results from potassium ion concentration on either side of the membrane. Acts as an outward rectifier when external potassium concentration is low. When external potassium concentration is high, current is inward.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y257|KCNK6_HUMAN Potassium channel subfamily K member 6 OS=Homo sapiens GN=KCNK6 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)

Query: 22  IGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKS 59
           + A +FA  EE WSFLD  YFCF++LSTIG GD VPG++
Sbjct: 187 VPAVIFAHLEEAWSFLDAFYFCFISLSTIGLGDYVPGEA 225

Exhibits outward rectification in a physiological K(+) gradient and mild inward rectification in symmetrical K(+) conditions.

Homo sapiens (taxid: 9606)

>sp|Q9Z2T2|KCNK1_RAT Potassium channel subfamily K member 1 OS=Rattus norvegicus GN=Kcnk1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 19  YICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKSFQR 62
           +  I A VF+  E+ W+FL+  YFCF++LSTIG GD VPG+ + +
Sbjct: 195 FFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQ 239

Weakly inward rectifying potassium channel.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
328717441	439	PREDICTED: hypothetical protein LOC10016	0.510	0.111	0.877	2e-20
321462594	317	hypothetical protein DAPPUDRAFT_23773 [D	0.520	0.157	0.725	4e-15
195056305	987	GH22848 [Drosophila grimshawi] gi|193899	0.510	0.049	0.653	6e-14
194756456	941	GF11481 [Drosophila ananassae] gi|190621	0.510	0.052	0.632	8e-14
19921934	918	CG1688 [Drosophila melanogaster] gi|5052	0.510	0.053	0.632	1e-13
195475128	919	GE22083 [Drosophila yakuba] gi|194175937	0.510	0.053	0.632	1e-13
195381115	958	GJ20830 [Drosophila virilis] gi|19414409	0.510	0.051	0.632	1e-13
195332913	919	GM20581 [Drosophila sechellia] gi|194125	0.510	0.053	0.632	1e-13
194858339	911	GG25264 [Drosophila erecta] gi|190661023	0.510	0.053	0.632	1e-13
195431928	1004	GK15616 [Drosophila willistoni] gi|19416	0.510	0.048	0.632	2e-13

>gi|328717441|ref|XP_001952545.2| PREDICTED: hypothetical protein LOC100167612 [Acyrthosiphon pisum]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/49 (87%), Positives = 46/49 (93%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQ 66
           GYIC+GA VFAAWE W+F+DGAYFCFVTLSTIGFGDLVPGKSFQ TDTQ
Sbjct: 333 GYICLGAAVFAAWEGWTFIDGAYFCFVTLSTIGFGDLVPGKSFQGTDTQ 381

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321462594|gb|EFX73616.1| hypothetical protein DAPPUDRAFT_23773 [Daphnia pulex]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%), Gaps = 1/51 (1%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPG-KSFQRTDTQI 67
           GYICIGA VF+AWEEWS+LDGAYF F+TLSTIGFGDLVPG K  ++ +T++
Sbjct: 242 GYICIGAAVFSAWEEWSYLDGAYFSFITLSTIGFGDLVPGSKVLEQGETKL 292

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195056305|ref|XP_001995051.1| GH22848 [Drosophila grimshawi] gi|193899257|gb|EDV98123.1| GH22848 [Drosophila grimshawi]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 38/49 (77%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  VFA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 897 YICVGTVVFALWENWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPEVQL 945

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194756456|ref|XP_001960493.1| GF11481 [Drosophila ananassae] gi|190621791|gb|EDV37315.1| GF11481 [Drosophila ananassae]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  +FA WE+WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 851 YICVGTVIFALWEDWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPELQL 899

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921934|ref|NP_610516.1| CG1688 [Drosophila melanogaster] gi|5052538|gb|AAD38599.1|AF145624_1 BcDNA.GH04802 [Drosophila melanogaster] gi|7303857|gb|AAF58903.1| CG1688 [Drosophila melanogaster] gi|220943664|gb|ACL84375.1| CG1688-PA [synthetic construct]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  +FA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 827 YICVGTVIFALWENWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPELQL 875

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195475128|ref|XP_002089836.1| GE22083 [Drosophila yakuba] gi|194175937|gb|EDW89548.1| GE22083 [Drosophila yakuba]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  +FA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 828 YICVGTVIFALWENWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPELQL 876

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195381115|ref|XP_002049300.1| GJ20830 [Drosophila virilis] gi|194144097|gb|EDW60493.1| GJ20830 [Drosophila virilis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  +FA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 869 YICVGTVIFALWENWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPELQL 917

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332913|ref|XP_002033136.1| GM20581 [Drosophila sechellia] gi|194125106|gb|EDW47149.1| GM20581 [Drosophila sechellia]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  +FA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 828 YICVGTVIFALWENWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPELQL 876

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194858339|ref|XP_001969156.1| GG25264 [Drosophila erecta] gi|190661023|gb|EDV58215.1| GG25264 [Drosophila erecta]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  +FA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 820 YICVGTVIFALWENWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPELQL 868

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431928|ref|XP_002063979.1| GK15616 [Drosophila willistoni] gi|194160064|gb|EDW74965.1| GK15616 [Drosophila willistoni]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query: 19  YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           YIC+G  +FA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct: 914 YICVGTVIFALWENWSLVDGAYFCFVTLSTIGYGDFVPTRSFNGPELQL 962

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
FB|FBgn0027589	918	CG1688 [Drosophila melanogaste	0.510	0.053	0.632	1.4e-13
FB|FBgn0262685	385	CG43155 [Drosophila melanogast	0.718	0.179	0.458	3.2e-11
FB|FBgn0035192	729	CG9194 [Drosophila melanogaste	0.5	0.065	0.625	4.7e-11
UNIPROTKB|Q9ERU4	179	Kcnk6 "Protein Kcnk6" [Rattus	0.427	0.229	0.619	4.9e-11
FB|FBgn0033257	395	CG8713 [Drosophila melanogaste	0.416	0.101	0.65	5.6e-11
WB|WBGene00010784	372	twk-48 [Caenorhabditis elegans	0.562	0.145	0.490	2.9e-10
RGD|621450	313	Kcnk6 "potassium channel, subf	0.427	0.130	0.619	7.2e-10
UNIPROTKB|G3V8R8	313	Kcnk6 "RCG53580, isoform CRA_c	0.427	0.130	0.619	7.2e-10
WB|WBGene00006690	676	twk-39 [Caenorhabditis elegans	0.541	0.076	0.509	8.1e-10
UNIPROTKB|E1BYI0	374	LOC100859545 "Uncharacterized	0.395	0.101	0.605	7.6e-09

FB|FBgn0027589 CG1688 [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 31/49 (63%), Positives = 38/49 (77%)

Query:    19 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
             YIC+G  +FA WE WS +DGAYFCFVTLSTIG+GD VP +SF   + Q+
Sbjct:   827 YICVGTVIFALWENWSLVDGAYFCFVTLSTIGYGDFVPARSFNGPELQL 875

GO:0005267 "potassium channel activity" evidence=ISS

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0262685 CG43155 [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 33/72 (45%), Positives = 47/72 (65%)

Query:    19 YICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP 77
             Y+  GAG+   WE+ W+F DG YFCF+T++TIGFGDLVP K        + I+I +++  
Sbjct:   226 YLAAGAGLLLLWEDDWTFFDGFYFCFITMTTIGFGDLVPKKPNYMLLCTLYILIGLALTS 285

Query:    78 TLG--VRPRYAT 87
             T+   VR +YAT
Sbjct:   286 TIIELVRRQYAT 297

GO:0005252 "open rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

FB|FBgn0035192 CG9194 [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 30/48 (62%), Positives = 34/48 (70%)

Query:    19 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQ 66
             YI  GA +FA WE WSFLD AYFCF+TL+TIGFGD VP K  +    Q
Sbjct:   631 YILGGAVLFAYWENWSFLDSAYFCFITLTTIGFGDFVPAKGVKDESEQ 678

GO:0005252 "open rectifier potassium channel activity" evidence=ISS

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|Q9ERU4 Kcnk6 "Protein Kcnk6" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query:    19 YICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKS 59
             +  I A VFA  EE WSFLD  YFCF++LSTIG GD VPG++
Sbjct:    50 FFLIPAAVFAYLEEAWSFLDAFYFCFISLSTIGLGDYVPGEA 91

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0033257 CG8713 [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query:    18 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPG 57
             GYI  GA +F  WE+W++LDG+YFC ++LS+IGFGDLVPG
Sbjct:   296 GYILWGALLFGRWEDWNYLDGSYFCLISLSSIGFGDLVPG 335

GO:0005250 "A-type (transient outward) potassium channel activity" evidence=ISS

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00010784 twk-48 [Caenorhabditis elegans (taxid:6239)]

 Score = 152 (58.6 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query:    18 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTD-TQIDIVI 71
             GY+ +G  +F  WE W+FL+  YFCF++L+TIGFGD  P  S   TD  Q  +VI
Sbjct:   276 GYLGVGTTIFKVWEGWTFLESFYFCFISLTTIGFGDKFPSTSVSNTDEAQEKLVI 330

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|621450 Kcnk6 "potassium channel, subfamily K, member 6" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query:    19 YICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKS 59
             +  I A VFA  EE WSFLD  YFCF++LSTIG GD VPG++
Sbjct:   184 FFLIPAAVFAYLEEAWSFLDAFYFCFISLSTIGLGDYVPGEA 225

GO:0005267 "potassium channel activity" evidence=IDA

UNIPROTKB|G3V8R8 Kcnk6 "RCG53580, isoform CRA_c" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
 Identities = 26/42 (61%), Positives = 31/42 (73%)

Query:    19 YICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKS 59
             +  I A VFA  EE WSFLD  YFCF++LSTIG GD VPG++
Sbjct:   184 FFLIPAAVFAYLEEAWSFLDAFYFCFISLSTIGLGDYVPGEA 225

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00006690 twk-39 [Caenorhabditis elegans (taxid:6239)]

 Score = 152 (58.6 bits), Expect = 8.1e-10, P = 8.1e-10
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query:    19 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVI 71
             +I  GA +F+ WE W+  DGAY+CF+TLSTIGFGD+VPG++     +Q  +V+
Sbjct:   504 FISGGAWLFSWWENWNGFDGAYYCFITLSTIGFGDIVPGQALDE-GSQEKLVV 555

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BYI0 LOC100859545 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query:    18 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLV 55
             G +CIGA  F+ +EEWSF    Y+CF+TL+TIGFGD V
Sbjct:   169 GTLCIGAAAFSQYEEWSFFHAYYYCFITLTTIGFGDYV 206

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JL58	KCNK9_CAVPO	No assigned EC number	0.5714	0.4375	0.1150	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	96
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	2e-09
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	0.001

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 19 YICIGAGVFAAWEE---WSFLDGAYFCFVTLSTIGFGDLVPG 57
           +  G   ++  EE   W FLD  YF FVTL+TIG+GD+VP 
Sbjct: 6  VLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPL 47

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 40  YFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT 78
           YF  VT+ST+G+GD+VP     R  T   I++ I+V  T
Sbjct: 174 YFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFAT 212

Length = 393

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.68
KOG4404|consensus	350		99.55
KOG1419|consensus	654		99.45
KOG3713|consensus	477		99.43
KOG1545|consensus	507		99.3
PRK10537	393	voltage-gated potassium channel; Provisional	99.29
KOG1418|consensus	433		99.25
KOG4404|consensus	350		99.24
KOG1418|consensus	433		99.12
KOG1420|consensus	1103		98.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.94
KOG4390|consensus	632		98.84
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	98.17
KOG3684|consensus	489		98.14
KOG3193|consensus	1087		97.96
KOG0498|consensus	727		97.87
KOG0501|consensus	971		97.6
PF00520	200	Ion_trans: Ion transport protein calcium channel s	96.03
KOG3827|consensus	400		94.99
KOG0500|consensus	536		94.24
KOG0499|consensus	815		87.05

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.68  E-value=4.9e-17  Score=101.26  Aligned_cols=63  Identities=38%  Similarity=0.604  Sum_probs=52.8

Q ss_pred             HHHHHHHHhHHHHh---hhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         16 QHGYICIGAGVFAA---WEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        16 l~~~l~~ga~~~~~---~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      ++.++..++..+..   .|+|++.|++||+++|+|||||||+.|.++.||++++++++.|+.++.+
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~   68 (79)
T PF07885_consen    3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFAL   68 (79)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHH
Confidence            45566677777777   5679999999999999999999999999999999999999999998875

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG4404|consensus

Probab=99.55  E-value=4.1e-15  Score=114.71  Aligned_cols=62  Identities=37%  Similarity=0.688  Sum_probs=55.0

Q ss_pred             HHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCc--------chhHHHHHHHHHHHHHHhh
Q psy15872         17 HGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKS--------FQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        17 ~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~--------~g~~~~~~~~~~gi~~i~~   78 (96)
                      .+.+..|+.+|+..|+|+|+||+|||++|+|||||||.++...        ..+.+...++++|+.++..
T Consensus       169 ~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a  238 (350)
T KOG4404|consen  169 ILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYA  238 (350)
T ss_pred             HHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHH
Confidence            5567789999999999999999999999999999999999554        4567889999999999876

>KOG1419|consensus

Probab=99.45  E-value=2.2e-13  Score=111.05  Aligned_cols=73  Identities=22%  Similarity=0.165  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhc-----------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHH
Q psy15872          5 DIEINAHSDRCQHGYICIGAGVFAAWEE-----------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEI   73 (96)
Q Consensus         5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-----------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi   73 (96)
                      ++|+++.+-..++..+. .+++.+..|.           -+|.||+||+++|+|||||||++|+|+.||+++..+.++||
T Consensus       230 ~~ELiTt~YIGFL~LIf-sSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligi  308 (654)
T KOG1419|consen  230 SKELITTWYIGFLVLIF-SSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGI  308 (654)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHH
Confidence            57788888777666664 4444445553           48999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q psy15872         74 SVRPT   78 (96)
Q Consensus        74 ~~i~~   78 (96)
                      +|+..
T Consensus       309 SFFAL  313 (654)
T KOG1419|consen  309 SFFAL  313 (654)
T ss_pred             HHHhc
Confidence            99975

>KOG3713|consensus

Probab=99.43  E-value=1.7e-13  Score=109.87  Aligned_cols=46  Identities=26%  Similarity=0.458  Sum_probs=42.7

Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      -|.+-++||+++|||||||||++|.|..||+.+...++.||..+.+
T Consensus       376 tSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAl  421 (477)
T KOG3713|consen  376 TSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLAL  421 (477)
T ss_pred             ccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhc
Confidence            5778899999999999999999999999999999999999888765

>KOG1545|consensus

Probab=99.30  E-value=1.1e-12  Score=103.36  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=55.8

Q ss_pred             HHHHHHHHhHHHHhh----h---c----CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh--hccc
Q psy15872         16 QHGYICIGAGVFAAW----E---E----WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT--LGVR   82 (96)
Q Consensus        16 l~~~l~~ga~~~~~~----e---~----~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~--~~~~   82 (96)
                      ++.++.+|..+|..-    |   +    -+..||+||++||||||||||++|.|..||+...+.++.|+.=+..  --.-
T Consensus       364 LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV  443 (507)
T KOG1545|consen  364 LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV  443 (507)
T ss_pred             HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence            455566666655432    2   1    5889999999999999999999999999999998888888655433  1224


Q ss_pred             cccCCcccccc
Q psy15872         83 PRYATGDQEET   93 (96)
Q Consensus        83 ~~~~~~~~~~~   93 (96)
                      +|++..+..||
T Consensus       444 sNFnyFYhrEt  454 (507)
T KOG1545|consen  444 SNFNYFYHRET  454 (507)
T ss_pred             ecccceeeccc
Confidence            45555544444

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.29  E-value=6.1e-12  Score=99.18  Aligned_cols=61  Identities=28%  Similarity=0.309  Sum_probs=51.2

Q ss_pred             HHHHHHHHhHHHHhhhc------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHH
Q psy15872         16 QHGYICIGAGVFAAWEE------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVR   76 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i   76 (96)
                      +...+..+...++..|+      +++.||+||+++|+||+||||++|.++.||++++..++.|+.++
T Consensus       144 ~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf  210 (393)
T PRK10537        144 ITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVF  210 (393)
T ss_pred             HHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34455556665555554      79999999999999999999999999999999999999998765

>KOG1418|consensus

Probab=99.25  E-value=3.9e-12  Score=96.16  Aligned_cols=46  Identities=26%  Similarity=0.515  Sum_probs=44.5

Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      |++.+|+||+.+++||||||++.|.|+.||+++++|+++||.++.+
T Consensus       114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li  159 (433)
T KOG1418|consen  114 WSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLL  159 (433)
T ss_pred             eecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999998854

>KOG4404|consensus

Probab=99.24  E-value=9.8e-12  Score=96.16  Aligned_cols=70  Identities=26%  Similarity=0.477  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhh----------------------------------------------cCChhhhhhh
Q psy15872          8 INAHSDRCQHGYICIGAGVFAAWE----------------------------------------------EWSFLDGAYF   41 (96)
Q Consensus         8 ~~~~~~~~l~~~l~~ga~~~~~~e----------------------------------------------~~s~~da~Yf   41 (96)
                      +.+.+.+|.+.|+++||.+|..+|                                              .|+|.-|+||
T Consensus         8 R~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYF   87 (350)
T KOG4404|consen    8 RTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYF   87 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEE
Confidence            455667788999999999999986                                              2899999999


Q ss_pred             eeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872         42 CFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus        42 ~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      +.+.+||||||...|.|+.||+|+|+|.++|+..-+
T Consensus        88 a~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~l  123 (350)
T KOG4404|consen   88 ATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTL  123 (350)
T ss_pred             EEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHH
Confidence            999999999999999999999999999999987754

>KOG1418|consensus

Probab=99.12  E-value=4.7e-12  Score=95.76  Aligned_cols=64  Identities=33%  Similarity=0.662  Sum_probs=56.1

Q ss_pred             HHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchh--------HHHHHHHHHHHHHHhhh
Q psy15872         16 QHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQR--------TDTQIDIVIEISVRPTL   79 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~--------~~~~~~~~~gi~~i~~~   79 (96)
                      +++|+..|+.++..+|+|++++++||+++|+|||||||++|.++.++        ........+|.....+.
T Consensus       224 ~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  295 (433)
T KOG1418|consen  224 SLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALV  295 (433)
T ss_pred             eEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHH
Confidence            46678889999999999999999999999999999999999999877        56777788888777663

>KOG1420|consensus

Probab=98.95  E-value=9.3e-10  Score=91.35  Aligned_cols=78  Identities=23%  Similarity=0.355  Sum_probs=66.5

Q ss_pred             HHHHHHHHhHHHHhhhc-------------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh----
Q psy15872         16 QHGYICIGAGVFAAWEE-------------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT----   78 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~-------------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~----   78 (96)
                      ++...+.++...+.+|+             .+|+|++||-.+||+||||||++-.|..||+|..++++.|++.+.-    
T Consensus       257 fisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpe  336 (1103)
T KOG1420|consen  257 FISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPE  336 (1103)
T ss_pred             HHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHH
Confidence            44455567777777775             4789999999999999999999999999999999999999988753    


Q ss_pred             ----hccccccCCcccccc
Q psy15872         79 ----LGVRPRYATGDQEET   93 (96)
Q Consensus        79 ----~~~~~~~~~~~~~~~   93 (96)
                          .|-|.||..+++.|.
T Consensus       337 iielignr~kyggeyk~eh  355 (1103)
T KOG1420|consen  337 IIELIGNRKKYGGEYKAEH  355 (1103)
T ss_pred             HHHHHccccccCceeehhc
Confidence                799999999987664

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.94  E-value=1.8e-09  Score=91.02  Aligned_cols=44  Identities=16%  Similarity=0.443  Sum_probs=40.0

Q ss_pred             hhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         35 FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        35 ~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      |..|+||+++|+|||||||++|.|..+++++++.+++|+.++..
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~  294 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAY  294 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHH
Confidence            45589999999999999999999999999999999999888643

>KOG4390|consensus

Probab=98.84  E-value=1.1e-09  Score=87.51  Aligned_cols=61  Identities=23%  Similarity=0.302  Sum_probs=49.7

Q ss_pred             HHHHHHHhHHHHhhhc------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872         17 HGYICIGAGVFAAWEE------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus        17 ~~~l~~ga~~~~~~e~------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      ...+++++++|+.-.+      -+...|+||+++||||.||||++|.|-.||++..+..+-|+.++.
T Consensus       333 MAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIA  399 (632)
T KOG4390|consen  333 MAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIA  399 (632)
T ss_pred             HHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEe
Confidence            4555666666665433      477899999999999999999999999999999988888876654

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=98.17  E-value=3.3e-06  Score=65.75  Aligned_cols=58  Identities=21%  Similarity=0.330  Sum_probs=42.6

Q ss_pred             CChhhhhhheeeeeeceecCC--cccCCcchhHHHHHHHHHHHHHHhh-hcc-ccccCCccc
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGD--LVPGKSFQRTDTQIDIVIEISVRPT-LGV-RPRYATGDQ   90 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGD--i~P~t~~g~~~~~~~~~~gi~~i~~-~~~-~~~~~~~~~   90 (96)
                      .+|.+|++|++.|+||||||.  +.|..+.+.++..+++++|+.+... .|+ -.|.+++.+
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~  144 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK  144 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            489999999999999999999  5678889999999999999877654 343 455555543

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG3684|consensus

Probab=98.14  E-value=2.3e-06  Score=69.07  Aligned_cols=62  Identities=18%  Similarity=0.336  Sum_probs=51.3

Q ss_pred             HHHHHHHhHHHHhhhc--------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         17 HGYICIGAGVFAAWEE--------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        17 ~~~l~~ga~~~~~~e~--------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +.+.++.+.++..-|.        .++.+++|+-.+|+-+|||||++|.|..||..++.-.++|-...+.
T Consensus       262 l~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sal  331 (489)
T KOG3684|consen  262 LSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSL  331 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHH
Confidence            4455566666666553        4589999999999999999999999999999999999999777654

>KOG3193|consensus

Probab=97.96  E-value=1.5e-05  Score=66.59  Aligned_cols=46  Identities=28%  Similarity=0.488  Sum_probs=40.3

Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      .+.+.++||.++|++||||||-+|.-+..++...+.+-+.+.++..
T Consensus       216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~  261 (1087)
T KOG3193|consen  216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPK  261 (1087)
T ss_pred             eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHH
Confidence            6889999999999999999999999999998888777777666653

>KOG0498|consensus

Probab=97.87  E-value=8.9e-06  Score=68.87  Aligned_cols=44  Identities=16%  Similarity=0.270  Sum_probs=41.2

Q ss_pred             hhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         35 FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        35 ~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      |.-|+||++.|+||+||||..|.++.-++|+++++++|+.+.+.
T Consensus       295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~  338 (727)
T KOG0498|consen  295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAY  338 (727)
T ss_pred             HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHH
Confidence            46689999999999999999999999999999999999998875

>KOG0501|consensus

Probab=97.60  E-value=4.6e-05  Score=63.98  Aligned_cols=45  Identities=20%  Similarity=0.490  Sum_probs=39.6

Q ss_pred             ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         34 SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        34 s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      -|..++||++.+|||||||++.|.|+.-|+|....+++|-.+..+
T Consensus       423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAt  467 (971)
T KOG0501|consen  423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYAT  467 (971)
T ss_pred             eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHH
Confidence            368899999999999999999999999999998888888666543

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=96.03  E-value=0.025  Score=38.07  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=33.2

Q ss_pred             CChhhhhhheeeeeeceecCCcccC-----CcchhHHHHHHHHHHH
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPG-----KSFQRTDTQIDIVIEI   73 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~-----t~~g~~~~~~~~~~gi   73 (96)
                      .++..++|+.+.++|+.|+||..|.     +..+.++...+.+++.
T Consensus       144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  189 (200)
T PF00520_consen  144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVS  189 (200)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHH
Confidence            4789999999999999999999997     7777777755454443

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3827|consensus

Probab=94.99  E-value=0.13  Score=41.19  Aligned_cols=42  Identities=19%  Similarity=0.213  Sum_probs=32.9

Q ss_pred             ChhhhhhheeeeeeceecCCcccCCc--chhHHHHHHHHHHHHH
Q psy15872         34 SFLDGAYFCFVTLSTIGFGDLVPGKS--FQRTDTQIDIVIEISV   75 (96)
Q Consensus        34 s~~da~Yf~~vTltTVGyGDi~P~t~--~g~~~~~~~~~~gi~~   75 (96)
                      ++..||-|++-|-||||||--++...  .+-+..+++.++|..+
T Consensus       112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii  155 (400)
T KOG3827|consen  112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVII  155 (400)
T ss_pred             chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHH
Confidence            67889999999999999999988664  4555556667766554

>KOG0500|consensus

Probab=94.24  E-value=0.086  Score=43.54  Aligned_cols=42  Identities=29%  Similarity=0.338  Sum_probs=37.2

Q ss_pred             hhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         36 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        36 ~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      .-++|||..|+||+| --..|.++.-..|...-.++|+.++++
T Consensus       185 ~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAt  226 (536)
T KOG0500|consen  185 LYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFAT  226 (536)
T ss_pred             HHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhh
Confidence            348999999999999 677899999999999999999888776

>KOG0499|consensus

Probab=87.05  E-value=1  Score=38.54  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=34.8

Q ss_pred             cCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872         32 EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus        32 ~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      +..|.-|+||++-|++||| |..-|.+-.--+|...--+.|+..++
T Consensus       401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFs  445 (815)
T KOG0499|consen  401 GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFS  445 (815)
T ss_pred             CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999 89889887766666555556655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
3ukm_A	280	Crystal Structure Of The Human Two Pore Domain Pota		3e-07
3um7_A	309	Crystal Structure Of The Human Two Pore Domain K+ I		7e-04

>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 19  YICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQI 67
           +  I A VF+  E+ W+FL+  YFCF++LSTIG GD VPG+ + +   ++
Sbjct: 185 FFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFREL 234

>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 26  VFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPG 57
           VF   E+WS L+  YF  VTL+T+GFGD V G
Sbjct: 216 VFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAG 247

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	6e-13
2q67_A	114	Potassium channel protein; inverted teepee, helix	2e-12
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	4e-12
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	6e-12
3ouf_A	97	Potassium channel protein; ION channel, membrane,	2e-11
3um7_A	309	Potassium channel subfamily K member 4; potassium	2e-11
1lnq_A	336	MTHK channels, potassium channel related protein;	3e-08

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 61.4 bits (148), Expect = 6e-13
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 15  CQHGYICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVI 71
               +  I A VF+  E+ W+FL+  YFCF++LSTIG GD VPG+ + +   ++  + 
Sbjct: 181 TVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 238

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 57.2 bits (138), Expect = 2e-12
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 19 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP----GKSF 60
           +  G   ++  E    +D  YF  VTL+T+G G+  P    GK F
Sbjct: 34 TLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIF 79

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 19 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP----GKSF 60
           +  G   ++  E    LD  YF  VTL+T+G G+  P    GK F
Sbjct: 37 TLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVF 82

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 55.0 bits (133), Expect = 6e-12
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 18 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
            I  G   F   E  S+    Y+ FVT++T+G+GD  P        T   IV+ I  
Sbjct: 12 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGT 69

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 54.4 bits (131), Expect = 2e-11
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 19 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
           +  G   ++  E    +D  YF  VTL+T+G+GD  P   F +  T + I I I +
Sbjct: 17 TLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 57.1 bits (137), Expect = 2e-11
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 18  GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 63
            ++     VF   E+WS L+  YF  VTL+T+GFGD V G   ++ 
Sbjct: 208 LFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD 253

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 18 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 56
            I  G   F   E  S+    Y+ FVT++T+G+GD  P
Sbjct: 29 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.8
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.79
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.79
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.79
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.76
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.76
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.74
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.74
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.74
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.64
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.63
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.62
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.61
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.59
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.57
1lnq_A	336	MTHK channels, potassium channel related protein;	99.5
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.48
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.44
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.41
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.38
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.37
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.12
3sya_A	340	G protein-activated inward rectifier potassium CH;	99.04
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.98
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.36
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	94.79
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	93.48

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.80  E-value=1.2e-19  Score=117.61  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhcC-------ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872          5 DIEINAHSDRCQHGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus         5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~~-------s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      +++.....+..++.++++++.+++..|+|       ++.||+||+++|+|||||||++|.++.||+++++++++|+.++.
T Consensus         4 ~~r~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~   83 (103)
T 2k1e_A            4 HEREAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFA   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence            34445555666778888999999999986       99999999999999999999999999999999999999999986


Q ss_pred             h
Q psy15872         78 T   78 (96)
Q Consensus        78 ~   78 (96)
                      .
T Consensus        84 ~   84 (103)
T 2k1e_A           84 L   84 (103)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.79  E-value=1e-19  Score=114.04  Aligned_cols=66  Identities=27%  Similarity=0.292  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         13 DRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        13 ~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +..++.++..|+..|+..|+|++.||+||+++|+|||||||++|.++.||++++.+++.|+.++..
T Consensus         7 ~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~   72 (82)
T 3ldc_A            7 LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAV   72 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            344567788899999999999999999999999999999999999999999999999999988765

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.79  E-value=1.2e-19  Score=117.01  Aligned_cols=72  Identities=25%  Similarity=0.281  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872          7 EINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus         7 ~~~~~~~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +.+...+..++.+++.|+..|+..|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~   76 (97)
T 3ouf_A            5 KEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFG   76 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            344445555677888899999999999999999999999999999999999999999999999999988765

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.79  E-value=1.1e-19  Score=120.26  Aligned_cols=70  Identities=24%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872          9 NAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus         9 ~~~~~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +...+..++.+++.|+.+|+..|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus        24 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~   93 (114)
T 2q67_A           24 FQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFG   93 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHH
Confidence            3444555667788899999999999999999999999999999999999999999999999999998765

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.76  E-value=4.3e-19  Score=121.22  Aligned_cols=72  Identities=25%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872          7 EINAHSDRCQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus         7 ~~~~~~~~~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +.+...+..++.+++.|+..|...|+|++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~   96 (148)
T 3vou_A           25 KEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFG   96 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            344555565677888899999999999999999999999999999999999999999999999999988764

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.76  E-value=9.6e-19  Score=118.11  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872          5 DIEINAHSDRCQHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus         5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      ..+.+...+..+++++++++.+++..|+       |++.||+||+++|+|||||||++|.++.||+++++++++|+.++.
T Consensus         4 ~~r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~   83 (139)
T 3eff_K            4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFG   83 (139)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHH
Confidence            3444555666677888899999999998       999999999999999999999999999999999999999998876


Q ss_pred             h
Q psy15872         78 T   78 (96)
Q Consensus        78 ~   78 (96)
                      .
T Consensus        84 ~   84 (139)
T 3eff_K           84 L   84 (139)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.74  E-value=2.1e-18  Score=119.59  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhcC-------ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872          5 DIEINAHSDRCQHGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus         5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~~-------s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      +.+.....+..+++++++++.+++..|++       ++.||+||+++|+|||||||++|.|+.||+++++++++|+.++.
T Consensus        48 ~~~~~~~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a  127 (155)
T 2a9h_A           48 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYG  127 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence            34445555555677788899999999987       89999999999999999999999999999999999999998875


Q ss_pred             h
Q psy15872         78 T   78 (96)
Q Consensus        78 ~   78 (96)
                      .
T Consensus       128 ~  128 (155)
T 2a9h_A          128 L  128 (155)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.74  E-value=2.2e-18  Score=116.95  Aligned_cols=57  Identities=25%  Similarity=0.348  Sum_probs=48.9

Q ss_pred             HHhHHHHhhh--cCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         22 IGAGVFAAWE--EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        22 ~ga~~~~~~e--~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +++..+...|  .|++.||+||+++|+|||||||++|.|+.||+++++.+++|+.++..
T Consensus        29 ~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~   87 (137)
T 4h33_A           29 IIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGM   87 (137)
T ss_dssp             HTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence            3443344444  49999999999999999999999999999999999999999988765

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.74  E-value=3.9e-18  Score=113.62  Aligned_cols=74  Identities=15%  Similarity=0.144  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872          5 DIEINAHSDRCQHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus         5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      +.+........++.++.+++.+++..|+       |++.||+||+++|+|||||||++|.|+.||++++++++.|+.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~  104 (122)
T 2ih3_C           25 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFG  104 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            3344444445556677788888988887       899999999999999999999999999999999999999999876


Q ss_pred             h
Q psy15872         78 T   78 (96)
Q Consensus        78 ~   78 (96)
                      .
T Consensus       105 ~  105 (122)
T 2ih3_C          105 L  105 (122)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=120.17  Aligned_cols=64  Identities=30%  Similarity=0.461  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhH------HHHHHHHHHHHHHhh
Q psy15872         15 CQHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT------DTQIDIVIEISVRPT   78 (96)
Q Consensus        15 ~l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~------~~~~~~~~gi~~i~~   78 (96)
                      ++++++++|+.+|+..|+|++.||+||+++|+|||||||++|.++.||.      ++++++++|+.++..
T Consensus       205 ~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~  274 (309)
T 3um7_A          205 GCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFAS  274 (309)
T ss_dssp             HHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            3467788999999999999999999999999999999999999999984      999999999988765

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.63  E-value=3.5e-16  Score=117.64  Aligned_cols=64  Identities=34%  Similarity=0.755  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhHHHHhhh-cCChhhhhhheeeeeeceecCCcccCCcc-------hhHHHHHHHHHHHHHHhh
Q psy15872         15 CQHGYICIGAGVFAAWE-EWSFLDGAYFCFVTLSTIGFGDLVPGKSF-------QRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        15 ~l~~~l~~ga~~~~~~e-~~s~~da~Yf~~vTltTVGyGDi~P~t~~-------g~~~~~~~~~~gi~~i~~   78 (96)
                      .+++++++|+.+|+..| +|++.||+||+++|+|||||||++|.++.       +|+++++++++|+.++..
T Consensus       181 ~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~  252 (280)
T 3ukm_A          181 TVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLV  252 (280)
T ss_dssp             HHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Confidence            34667889999999998 89999999999999999999999999996       599999999999998754

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.62  E-value=1.8e-17  Score=115.26  Aligned_cols=63  Identities=19%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             HHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         16 QHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +++++++++.+++..|+       |++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus        42 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~  111 (166)
T 3pjs_K           42 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL  111 (166)
T ss_dssp             STTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence            34566777888888888       9999999999999999999999999999999999999999998875

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.61  E-value=6.4e-16  Score=117.48  Aligned_cols=72  Identities=21%  Similarity=0.234  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhh-------------------------------------------------------
Q psy15872          7 EINAHSDRCQHGYICIGAGVFAAWE-------------------------------------------------------   31 (96)
Q Consensus         7 ~~~~~~~~~l~~~l~~ga~~~~~~e-------------------------------------------------------   31 (96)
                      ......++|.+.|+++||.+|..+|                                                       
T Consensus        30 ~~~l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~  109 (309)
T 3um7_A           30 TTLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQS  109 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCC
Confidence            3445568888999999999998875                                                       


Q ss_pred             ---cCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         32 ---EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        32 ---~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                         +|++.||+||+++|+|||||||++|.|+.||+++++++++|+.++..
T Consensus       110 ~~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~  159 (309)
T 3um7_A          110 SHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGI  159 (309)
T ss_dssp             ---CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHH
Confidence               17899999999999999999999999999999999999999988754

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=114.71  Aligned_cols=71  Identities=28%  Similarity=0.349  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHhhh-------------------------------------------------------c
Q psy15872          8 INAHSDRCQHGYICIGAGVFAAWE-------------------------------------------------------E   32 (96)
Q Consensus         8 ~~~~~~~~l~~~l~~ga~~~~~~e-------------------------------------------------------~   32 (96)
                      +.+...++.+.|+++||.+|..+|                                                       +
T Consensus        12 ~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~~~~~   91 (280)
T 3ukm_A           12 MFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWN   91 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCCCCCC
Confidence            345556667899999999998776                                                       2


Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      |++.||+||+++|+|||||||+.|.|+.||+++++++++|+.+...
T Consensus        92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~  137 (280)
T 3ukm_A           92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLL  137 (280)
T ss_dssp             SSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999988653

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.57  E-value=3.3e-15  Score=106.25  Aligned_cols=63  Identities=24%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             HHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         16 QHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      ++.++.+++..++..|+       +++.||+||+++|+|||||||+.|.|+.||++++..++.|+.++..
T Consensus       140 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~  209 (223)
T 1orq_C          140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL  209 (223)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence            45556678888888887       8999999999999999999999999999999999999999988764

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.50  E-value=7.3e-16  Score=115.05  Aligned_cols=63  Identities=29%  Similarity=0.361  Sum_probs=57.6

Q ss_pred             HHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         16 QHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +++++++|+.+|+..|+|+|.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus        27 ~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~   89 (336)
T 1lnq_A           27 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAV   89 (336)
T ss_dssp             TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            356677899999999999999999999999999999999999999999999999999888754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.48  E-value=4.6e-14  Score=111.74  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhHHHHh----hhc--CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         12 SDRCQHGYICIGAGVFAA----WEE--WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        12 ~~~~l~~~l~~ga~~~~~----~e~--~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      .+..+++++++++.+|+.    .|+  |+|.||+||+++|+|||||||+.|.++.||+++++++++|+.++..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~   95 (565)
T 4gx0_A           23 YCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDI   95 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHH
Confidence            333345555566666655    566  9999999999999999999999999999999999999999877643

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.44  E-value=1.3e-13  Score=104.12  Aligned_cols=57  Identities=25%  Similarity=0.364  Sum_probs=49.0

Q ss_pred             HHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         22 IGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        22 ~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +.+.+|...++       +++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus        63 ~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~  126 (301)
T 1xl4_A           63 LFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAV  126 (301)
T ss_dssp             HHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34444665542       7999999999999999999999999999999999999999988764

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.41  E-value=2.6e-13  Score=101.82  Aligned_cols=63  Identities=22%  Similarity=0.155  Sum_probs=54.9

Q ss_pred             HHHHHHHHhHHHHhhhcC-------ChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         16 QHGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~~-------s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      ++..+.+++.+++..|++       ++.||+||+++|+|||||||++|.++.||+++.+.++.|+.++..
T Consensus       136 ~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~  205 (355)
T 3beh_A          136 FGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL  205 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            345566777788888874       899999999999999999999999999999999999999888754

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.38  E-value=6.1e-13  Score=101.28  Aligned_cols=46  Identities=24%  Similarity=0.449  Sum_probs=43.3

Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +++.||+||+++|+|||||||++|.+..||++++++++.|+.++..
T Consensus        77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~  122 (321)
T 2qks_A           77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL  122 (321)
T ss_dssp             TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999999888754

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.37  E-value=5.5e-13  Score=102.05  Aligned_cols=46  Identities=24%  Similarity=0.496  Sum_probs=43.3

Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +++.||+||+++|+|||||||++|.++.||+++++++++|+.++..
T Consensus        95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~  140 (333)
T 1p7b_A           95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL  140 (333)
T ss_dssp             SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999988754

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.12  E-value=8.7e-11  Score=93.63  Aligned_cols=58  Identities=21%  Similarity=0.332  Sum_probs=48.0

Q ss_pred             HHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         20 ICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        20 l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      .++|+.++ ..|+       .++.||+||+++|+|||||||+.|.++.||+++++.++.|+.++.+
T Consensus       355 ~if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l  419 (514)
T 2r9r_B          355 ILFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL  419 (514)
T ss_dssp             HHHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHH
Confidence            33444444 4465       4899999999999999999999999999999999999999877654

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=99.04  E-value=4e-10  Score=86.60  Aligned_cols=46  Identities=24%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             CChhhhhhheeeeeeceecCCcccC--CcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPG--KSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~--t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      .++.|++||+++|+|||||||+.|.  ++.|++++.+++++|+.+...
T Consensus        90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~  137 (340)
T 3sya_A           90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAF  137 (340)
T ss_dssp             CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999997  688999999999999988765

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.98  E-value=6.9e-10  Score=85.34  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=42.0

Q ss_pred             CChhhhhhheeeeeeceecCCcccC--CcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPG--KSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~--t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      .++.|++||+++|+|||||||+.|.  ++.|+++..+++++|+.++..
T Consensus        93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~  140 (343)
T 3spc_A           93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSF  140 (343)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999974  899999999999999988765

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.36  E-value=2e-07  Score=68.13  Aligned_cols=45  Identities=11%  Similarity=0.078  Sum_probs=35.9

Q ss_pred             CChhhhhhheeeeeeceecC-Ccc-cCCcch----hHHHHHHHHHHHHHHh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFG-DLV-PGKSFQ----RTDTQIDIVIEISVRP   77 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyG-Di~-P~t~~g----~~~~~~~~~~gi~~i~   77 (96)
                      -++.||+|+.++++||+||| |+. |.++.|    +.+....++.|+.++.
T Consensus       179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~ln  229 (285)
T 3rvy_A          179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMIN  229 (285)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHH
Confidence            58899999999999999999 996 877765    6666666666666554

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=94.79  E-value=0.032  Score=38.95  Aligned_cols=40  Identities=10%  Similarity=-0.132  Sum_probs=28.4

Q ss_pred             CChhhhhhheeeeeeceecCCccc----CCcchhHHHHHHHHHH
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVP----GKSFQRTDTQIDIVIE   72 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P----~t~~g~~~~~~~~~~g   72 (96)
                      .++.+|+|..+.++|+.|++|+..    .++++.++-..+.+++
T Consensus       164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~  207 (229)
T 4dxw_A          164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIIC  207 (229)
T ss_dssp             SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            478999999999999999999733    3445555444444444

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=93.48  E-value=0.1  Score=41.89  Aligned_cols=43  Identities=12%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             hhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         35 FLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        35 ~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +.+++|+++.+++..| ++..|.+..+|++.....++++.+...
T Consensus       564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~  606 (823)
T 3kg2_A          564 IFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISS  606 (823)
T ss_dssp             HHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHH
Confidence            6689999999999999 789999999999998888887777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	2e-11

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 52.8 bits (127), Expect = 2e-11
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 18 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISV 75
            I  G   F   E  S+    Y+ FVT++T+G+GD  P        T   IV+ I  
Sbjct: 11 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGT 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.77
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.71
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.55
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.55
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.76

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.77  E-value=1.1e-19  Score=116.48  Aligned_cols=74  Identities=16%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHh
Q psy15872          5 DIEINAHSDRCQHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRP   77 (96)
Q Consensus         5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~   77 (96)
                      .-+.+...+..+++.+++++..++..|+       .++.||+||+++|+|||||||++|.|+.||+++.+.++.|+.++.
T Consensus         4 ~~r~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~   83 (103)
T d1r3jc_           4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFG   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHH
Confidence            3344444455556667778888877775       479999999999999999999999999999999999999998875


Q ss_pred             h
Q psy15872         78 T   78 (96)
Q Consensus        78 ~   78 (96)
                      .
T Consensus        84 ~   84 (103)
T d1r3jc_          84 L   84 (103)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.71  E-value=1.4e-19  Score=111.55  Aligned_cols=63  Identities=29%  Similarity=0.361  Sum_probs=57.5

Q ss_pred             HHHHHHHHhHHHHhhhcCChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         16 QHGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        16 l~~~l~~ga~~~~~~e~~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      ++.++.+|+..++..|+|++.||+||+++|+|||||||++|.++.||++++++++.|+.++..
T Consensus         9 ~~~~~~~g~~~~~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~   71 (80)
T d1lnqa2           9 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAV   71 (80)
T ss_dssp             TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            345677899999999999999999999999999999999999999999999999999877654

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.55  E-value=2.1e-15  Score=97.68  Aligned_cols=46  Identities=24%  Similarity=0.496  Sum_probs=43.6

Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +++.||+||+++|+|||||||++|.++.||+++.++++.|+.+...
T Consensus        60 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~  105 (116)
T d1p7ba2          60 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL  105 (116)
T ss_dssp             SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999888754

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.55  E-value=3.2e-15  Score=96.65  Aligned_cols=46  Identities=26%  Similarity=0.430  Sum_probs=43.5

Q ss_pred             CChhhhhhheeeeeeceecCCcccCCcchhHHHHHHHHHHHHHHhh
Q psy15872         33 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDTQIDIVIEISVRPT   78 (96)
Q Consensus        33 ~s~~da~Yf~~vTltTVGyGDi~P~t~~g~~~~~~~~~~gi~~i~~   78 (96)
                      +++.||+||+++|+|||||||++|.++.||+++.++++.|+.+...
T Consensus        59 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~  104 (116)
T d1xl4a2          59 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAV  104 (116)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999888765

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.76  E-value=3.5e-09  Score=61.20  Aligned_cols=47  Identities=11%  Similarity=0.116  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhc-------CChhhhhhheeeeeeceec
Q psy15872          5 DIEINAHSDRCQHGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGF   51 (96)
Q Consensus         5 ~~~~~~~~~~~l~~~l~~ga~~~~~~e~-------~s~~da~Yf~~vTltTVGy   51 (96)
                      +-+.+......+++.+.+++.+.+..|+       .+++|++||+++|+|||||
T Consensus         4 ~~R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            3334444444445555566666666664       5889999999999999998