Psyllid ID: psy15891

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------90

MTDESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLAEASSTDTSTDDADTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVIGTFKN

ccccccccccccccHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHccccccccEEEEcccEEEEcccccccccccccccccccccccHHcccEEEcccccEEEEccccHHHHHHHHHHccHHHHHHcccccHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcHHHHHHccccccccHHHHHHHHcccccccccHHHHHHccHHHHcHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccccc

cccccHHccccHccHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccccccEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHEccccccEEEEcccccEEEccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccccccccccHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccccccccccccccccEEEEcEEEccccEEHccccccEEEccccccccccHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHccccccHEEEEEccccccccccHHHHHHHHcccHcHcEEEEHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHccccHHHHHHHHHccccHHHHccccccccccHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEHHHHHEHccccccccccccccccccccccccccEcHHHHHHHcccccccccc

mtdeswtnvssLNSLSEVYKLYCEgkvldktdrnifveGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLflerfphpvtlAGMLELSTAYLPDTLATFEVIQALFPLflerfphpvtlAGMLELSTaylpvnnnWVKYFNESCQTFNDLNVEMKSLLMDKCDQAcsllhddkykdslwlwdqdwsvKDLKLKKKANKTlsvdqeteepeeFYEInkngedqteDEFVKRRRELVEKFKplmqtkdrlpvnssyligypewyrklcvkphsadkdavskqelihdgisdtseawipgpslistsmqitpKLLSLtwksmplhfirghgwgylvpystdikvpdaenipleQLKQLYNNItkqdnceanvDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKkklaeasstdtstddadtpreigfiklphkdgehlnvgnplsrdfinkfsdnslagvdiGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIEsegrdygvilpqlivsgtlTRRAVEATWMTASNAVGERVGSELRAMIqapdgysiigadvdsqELWIASVigdsycakehgatplgwmtlsgqksnatdmHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQfnpemsksdAKSKARKMYTLtkgkklyrlkdgHLEELIKRVYSKYEAREVCSAYNTsvdkifdkpqwyggteSAMFNRLEEIatslqpvtpflncrlsralepvseddsKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDeirylvpdeeKYETALALHVTNLLTRAFCIkkldmtdiplsisffsgveIDKVlrkesdndcktpsnpyglckgygiplgeILDIYQTIDKAngvigtfkn

mtdeswtnvsslnSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDwsvkdlklkkkanktlsvdqeteepeefyeinkngedqtedefVKRRRELVEkfkplmqtkdrlpvnssYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISfidcsksakRLEVIANVldkkklaeasstdtstddadtpreIGFIklphkdgehlNVGNPLSRDFINKFSdnslagvdigAKRIIEISRMLSYWRNNHERVKKQfvvwlnkkdlprRLVEniesegrdygvilpqlivSGTLTRRAVEATWMtasnavgervGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKavgisrehaKIINYARIYGAGERFAERLLKQfnpemsksdakskarkmytltkgkklyrlkdghleELIKRVyskyeareVCSAYntsvdkifdkpqWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRkesdndcktpsnpyglckGYGIPLGEILDIYQTIDKANGVIGTFKN

MTDESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDWSVkdlklkkkanktlSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLAEasstdtstddadtPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVIGTFKN

***********LNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDWSVKDLKL****************************************************KDRLPVNSSYLIGYPEWYRKLCVKPH***********LIHDGISDTSEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDNCE*************VETNISFIDCSKSAKRLEVIANVL************************GFIKLPH**GEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQ****TDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLK******************YTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRK*****CKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVIGT***

**DESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDWSVKDL***************************************RRRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHS******SKQELIHDGISDTSEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDN*******AQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLAEASSTDTSTDDADTPREIGFIKLPHK*****NVGNPLSRDF****************KRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRA***************VGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKT**************LGEILDIYQTIDKANG*******

***********LNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDWSVKDLKLKKKA***************FYEINKNGEDQTEDEFVKRRRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKL*************DTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPE*********ARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVIGTFKN

***ESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLWDQDWSVKDLKLKK********************************FVKRRRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKP***************D****TSEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLD*KKL*E*SSTDTSTDDADTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKK**************RDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKAN**I*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		899	2.2.26 [Sep-21-2011]
Q27607		1145	DNA polymerase subunit ga	yes	N/A	0.907	0.712	0.484	0.0
P54098		1239	DNA polymerase subunit ga	yes	N/A	0.916	0.665	0.426	0.0
Q9QYV8		1216	DNA polymerase subunit ga	yes	N/A	0.921	0.680	0.430	0.0
P54099		1239	DNA polymerase subunit ga	yes	N/A	0.915	0.664	0.431	0.0
Q91684		1200	DNA polymerase subunit ga	N/A	N/A	0.909	0.681	0.424	0.0
Q92076		647	DNA polymerase subunit ga	no	N/A	0.658	0.914	0.453	1e-159
Q01941		1012	DNA polymerase gamma OS=K	yes	N/A	0.731	0.650	0.329	1e-124
Q9Y767		1456	DNA polymerase gamma, mit	N/A	N/A	0.471	0.291	0.425	1e-104
Q12704		1018	DNA polymerase gamma OS=S	yes	N/A	0.466	0.411	0.425	1e-100
P15801		1254	DNA polymerase gamma OS=S	yes	N/A	0.472	0.338	0.408	9e-99

>sp\|Q27607\|DPOG1_DROME DNA polymerase subunit gamma-1, mitochondrial OS=Drosophila melanogaster GN=tam PE=1 SV=2	Back alignment and function desciption

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/897 (48%), Positives = 570/897 (63%), Gaps = 81/897 (9%)

Query: 3    DESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLAT 62
            D  W   SSLNSL EV++LYC G  L K  RNIFVEG+LE +  ++ +L  YCA D  AT
Sbjct: 311  DLGWLEQSSLNSLVEVHRLYCGGDTLSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEAT 370

Query: 63   FEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLA 122
              +                                      ++ L+PL+ ERFPHP +LA
Sbjct: 371  HRI--------------------------------------LRVLYPLYAERFPHPASLA 392

Query: 123  GMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWL 182
            GMLE+ +AYLPVN+NW +Y  E+  T+ DL++E K  L  + ++ACSLL DD+Y+ +LWL
Sbjct: 393  GMLEMGSAYLPVNSNWERYIREAQLTYEDLSIEAKYHLGRRAEEACSLLLDDQYRQNLWL 452

Query: 183  WDQDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKP 242
            WD+DWSV++LKLK+   +         +P    E+  +G    E       R L  KF+ 
Sbjct: 453  WDEDWSVQELKLKQPPKR---------KPLPTVELKDSGNTPEE-------RRLQAKFQH 496

Query: 243  LMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSL 302
            L   +  LP     L GYP WYRKLC KP +   D +         + D  E W PG S 
Sbjct: 497  LYDQQALLPARRPLLPGYPLWYRKLCRKPPAKRADEI---------LEDDEEPWSPGASE 547

Query: 303  ISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQL--KQLYNN 360
            IST MQI PKLLSL W+  PLH+ R  GWG+LVP+ +D +  D   +P+EQL        
Sbjct: 548  ISTGMQIAPKLLSLCWEGYPLHYEREQGWGFLVPFRSDSEGVD--RLPMEQLLAHCPVPE 605

Query: 361  ITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLAEASSTDTST 420
              +    +A  D A + L   VE ++      +  K+L      L+ +        +   
Sbjct: 606  FARLSASKAESDMAFDMLPGQVEQHLGK---REHYKKLSQKQQRLETQYQGSGVWCNKVL 662

Query: 421  DDADTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDI---GAKRIIEISRM 477
            DD        F+KLPHK+G    VGNPLS+DF+NKF++N L+  D     A R+I+I+RM
Sbjct: 663  DDC-----CFFLKLPHKNGPSFRVGNPLSKDFLNKFAENVLSSGDPSCQAAARVIDIARM 717

Query: 478  LSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEAT 537
            +SYWRNN +R+  Q VVWL+ + LP       + +   YG I PQ++  GTLTRRA+E T
Sbjct: 718  MSYWRNNRDRIMGQMVVWLDSQQLPNEFTGE-KCQPIAYGAICPQVVACGTLTRRAMEPT 776

Query: 538  WMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGW 597
            WMTASN+  +R+GSELR+M+QAP GY ++GADVDSQELWIASV+GD+Y   EHGATPLGW
Sbjct: 777  WMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYACGEHGATPLGW 836

Query: 598  MTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDA 657
            MTLSG KSN +DMHSITAKAVGISR+HAK+INYARIYGAG+ FAE LL+QFNP  S S+A
Sbjct: 837  MTLSGSKSNGSDMHSITAKAVGISRDHAKVINYARIYGAGQLFAETLLRQFNPTFSASEA 896

Query: 658  KSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGG 717
            K+KA KM+++TKGK++YRL++   +EL  R YS YEA  +    N ++ ++F +P W GG
Sbjct: 897  KAKAMKMFSITKGKRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAEVFHRPNWQGG 956

Query: 718  TESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVS--EDDSKFIQTRINWVVQSGAVDFL 775
            TESAMFNRLEEIAT  QP TPFL  RLSRALE  +  E + +F+ TRINWVVQSGAVDFL
Sbjct: 957  TESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFLPTRINWVVQSGAVDFL 1016

Query: 776  HLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTD 835
            HLMLV MRWL+    RF +S HDE+RYLV +E   + ALA+H+TNL+TR+FC+ ++ + D
Sbjct: 1017 HLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTRSFCVSRIGLQD 1076

Query: 836  IPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANG 892
            +P+S++FFS VE+D VLRKE   DCKTPSNP+GL  GYGI  G+ L + + I+KA G
Sbjct: 1077 LPMSVAFFSSVEVDTVLRKECTMDCKTPSNPHGLRIGYGIQPGQSLSVAEAIEKAGG 1133

Involved in the replication of mitochondrial DNA. Has both 5'->3' DNA polymerase and 3'->5' exonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp\|P54098\|DPOG1_HUMAN DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1	Back alignment and function description

>sp\|Q9QYV8\|DPOG1_RAT DNA polymerase subunit gamma-1 OS=Rattus norvegicus GN=Polg PE=2 SV=1	Back alignment and function description

>sp\|P54099\|DPOG1_MOUSE DNA polymerase subunit gamma-1 OS=Mus musculus GN=Polg PE=1 SV=2	Back alignment and function description

>sp\|Q91684\|DPOG1_XENLA DNA polymerase subunit gamma-1 OS=Xenopus laevis GN=polg PE=2 SV=1	Back alignment and function description

>sp\|Q92076\|DPOG1_CHICK DNA polymerase subunit gamma-1 (Fragment) OS=Gallus gallus GN=POLG PE=2 SV=1	Back alignment and function description

>sp\|Q01941\|DPOG_PICPA DNA polymerase gamma OS=Komagataella pastoris GN=MIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q9Y767\|DPOG_NEUCR DNA polymerase gamma, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mip-1 PE=3 SV=2	Back alignment and function description

>sp\|Q12704\|DPOG_SCHPO DNA polymerase gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mip1 PE=3 SV=2	Back alignment and function description

>sp\|P15801\|DPOG_YEAST DNA polymerase gamma OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIP1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		899
307184738		1254	DNA polymerase subunit gamma-1, mitochon	0.906	0.649	0.503	0.0
270006334		1050	hypothetical protein TcasGA2_TC008519 [T	0.878	0.752	0.511	0.0
189236910		1093	PREDICTED: similar to DNA polymerase sub	0.878	0.722	0.511	0.0
170053309		1150	DNA polymerase subunit gamma 1, mitochon	0.898	0.702	0.517	0.0
322796178		1253	hypothetical protein SINV_08354 [Solenop	0.908	0.652	0.500	0.0
195031476		1147	GH10618 [Drosophila grimshawi] gi\|193904	0.904	0.708	0.493	0.0
332029311		1247	DNA polymerase subunit gamma-1, mitochon	0.904	0.651	0.492	0.0
383853612		1231	PREDICTED: DNA polymerase subunit gamma-	0.899	0.657	0.501	0.0
194761126		1134	GF15619 [Drosophila ananassae] gi\|190616	0.903	0.716	0.492	0.0
195437646		1162	GK24652 [Drosophila willistoni] gi\|19416	0.890	0.689	0.485	0.0

>gi\|307184738\|gb\|EFN71060.1\| DNA polymerase subunit gamma-1, mitochondrial [Camponotus floridanus]	Back alignment and taxonomy information

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/895 (50%), Positives = 604/895 (67%), Gaps = 80/895 (8%)

Query: 4    ESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATF 63
            ++W + +SLNSL EV+KLYC G  + K  R+IFVEG++ED++NN++ LMTYCA D +A  
Sbjct: 410  DNWQSNTSLNSLIEVHKLYC-GSEISKESRDIFVEGTIEDVKNNFNMLMTYCASDAVA-- 466

Query: 64   EVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAG 123
                                                T  V++ LFPLF ERFPHPVTLAG
Sbjct: 467  ------------------------------------THNVLRNLFPLFQERFPHPVTLAG 490

Query: 124  MLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLW 183
            MLEL +AYLPVN+NW +Y  ES  TF+DLN E K  L  + D  C L+HD+KYK  LW+W
Sbjct: 491  MLELGSAYLPVNSNWQRYLEESESTFDDLNYEAKFTLAKRADTVCHLMHDEKYKQDLWMW 550

Query: 184  DQDWSVKDLKLKKKANKTLSVDQ-ETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKP 242
            DQDWS +++K+K K  K + +D  ET++ E+  +     +D+ E++       L ++F  
Sbjct: 551  DQDWSTQEIKMKAKMPKKVKLDNIETKDMEKLSDKKYLSDDEEEEQ-----DPLAKEFAY 605

Query: 243  LMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSL 302
            L +T+  LPV   ++ GYP WYRKLC KP+  D                    W+PGP  
Sbjct: 606  LEETRYLLPVRMPHMPGYPAWYRKLCPKPNDED--------------------WMPGPQN 645

Query: 303  ISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNIT 362
            ISTSMQ+ PKLL+LTW+  PLH+IR HGWG LVPY+ D+ +     +PL+ L   Y  + 
Sbjct: 646  ISTSMQVVPKLLNLTWEKYPLHYIREHGWGILVPYNNDLDI--ETKLPLKNL-LAYCPLP 702

Query: 363  KQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLAEASSTDTSTDD 422
               +     ++A ++LR  V+ ++   +  +  K+     N  D K + + +    + D 
Sbjct: 703  TSKSSRDISEDAMSTLRTDVQNDLHKTEFWQFKKK----QNGPDDK-IYKGTGVWCNVDI 757

Query: 423  ADTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIGAKRIIEISRMLSYWR 482
             +      F KLPHKDG   NVGNPL++DF+NKFS+N LAG+++ A  +++I+RMLSYWR
Sbjct: 758  DNC---CYFFKLPHKDGVSRNVGNPLAKDFLNKFSENVLAGLNVSAAEVLKIARMLSYWR 814

Query: 483  NNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTAS 542
            NN +R+  Q V+WL+   LP   ++ I+   R YG I+PQ++VSGTLTRRAVE TWMTAS
Sbjct: 815  NNRDRIMSQLVIWLDDHSLPGS-IKRIKKHMR-YGAIIPQVVVSGTLTRRAVEPTWMTAS 872

Query: 543  NAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSG 602
            NA  ER+GSELR M+QAP GY+I+GADVDSQELWIAS+IGD++    HGATP GWMTL G
Sbjct: 873  NAHIERIGSELRCMVQAPPGYNIVGADVDSQELWIASIIGDAHYKSIHGATPFGWMTLIG 932

Query: 603  QKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKAR 662
             KSN TDMHS+TAKA+GISR+HAK+INYARIYGAG++FAERLLKQFNP M+ ++A SK+R
Sbjct: 933  TKSNGTDMHSVTAKAIGISRDHAKVINYARIYGAGQKFAERLLKQFNPSMTDAEATSKSR 992

Query: 663  KMYTLTKGKKLYRLKDGHL-EELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESA 721
            KM+ LTKGKK++RLK   +  +L  ++Y+ Y+A ++   +  ++  +F K +W  G+ESA
Sbjct: 993  KMFALTKGKKVFRLKAEFINNDLEDKLYTSYQAYQMAKLHGKTLQDMFQKSEWMDGSESA 1052

Query: 722  MFNRLEEIATSLQPVTPFLNCRLSRALEPV-SEDDSKFIQTRINWVVQSGAVDFLHLMLV 780
            MFNRLEEIA S  PVTPFLN RLSRALE   ++DD KF+ T+INWVVQSGAVDFLHLMLV
Sbjct: 1053 MFNRLEEIAGSKHPVTPFLNARLSRALEITDTDDDDKFLPTKINWVVQSGAVDFLHLMLV 1112

Query: 781  CMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSI 840
            CMRWL+  + RF +S HDE+RYLVP   KY  ALA+HVTNLLTR+FC  +L M D+P+S+
Sbjct: 1113 CMRWLMRDNARFCLSFHDEVRYLVPSRYKYNAALAMHVTNLLTRSFCASRLGMKDLPMSV 1172

Query: 841  SFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVIG 895
            +FF+ VE+D VLRKES +DCKTPSNP+GL  GY +  GE LD++  ++K+ G +G
Sbjct: 1173 AFFAAVEVDTVLRKESAHDCKTPSNPHGLQNGYEVSPGESLDVWAALEKSGGSLG 1227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|270006334\|gb\|EFA02782.1\| hypothetical protein TcasGA2_TC008519 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|189236910\|ref\|XP_968888.2\| PREDICTED: similar to DNA polymerase subunit gamma 1, mitochondrial [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|170053309\|ref\|XP_001862614.1\| DNA polymerase subunit gamma 1, mitochondrial [Culex quinquefasciatus] gi\|167873869\|gb\|EDS37252.1\| DNA polymerase subunit gamma 1, mitochondrial [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|322796178\|gb\|EFZ18754.1\| hypothetical protein SINV_08354 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|195031476\|ref\|XP_001988346.1\| GH10618 [Drosophila grimshawi] gi\|193904346\|gb\|EDW03213.1\| GH10618 [Drosophila grimshawi]	Back alignment and taxonomy information

>gi\|332029311\|gb\|EGI69294.1\| DNA polymerase subunit gamma-1, mitochondrial [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|383853612\|ref\|XP_003702316.1\| PREDICTED: DNA polymerase subunit gamma-1, mitochondrial-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|194761126\|ref\|XP_001962783.1\| GF15619 [Drosophila ananassae] gi\|190616480\|gb\|EDV32004.1\| GF15619 [Drosophila ananassae]	Back alignment and taxonomy information

>gi\|195437646\|ref\|XP_002066751.1\| GK24652 [Drosophila willistoni] gi\|194162836\|gb\|EDW77737.1\| GK24652 [Drosophila willistoni]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		899
FB\|FBgn0004406		1145	tam "tamas" [Drosophila melano	0.709	0.557	0.520	1.5e-212
UNIPROTKB\|F1SK24		1224	POLG "Uncharacterized protein"	0.511	0.375	0.552	9.7e-210
UNIPROTKB\|P54098		1239	POLG "DNA polymerase subunit g	0.511	0.371	0.544	4.2e-207
ZFIN\|ZDB-GENE-060303-1		1206	polg "polymerase (DNA directed	0.640	0.477	0.428	6.9e-205
UNIPROTKB\|E1BDI3		1217	POLG "Uncharacterized protein"	0.511	0.377	0.544	1.2e-177
UNIPROTKB\|E2QRS5		1235	POLG "Uncharacterized protein"	0.511	0.372	0.544	1.7e-176
MGI\|MGI:1196389		1239	Polg "polymerase (DNA directed	0.511	0.371	0.536	5.8e-176
RGD\|620057		1216	Polg "polymerase (DNA directed	0.511	0.378	0.538	2.1e-156
UNIPROTKB\|Q91684		1200	polg "DNA polymerase subunit g	0.515	0.385	0.530	4.4e-154
UNIPROTKB\|F1P0C5		954	POLG "DNA polymerase subunit g	0.392	0.370	0.506	2.7e-141

FB\|FBgn0004406 tam "tamas" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1703 (604.5 bits), Expect = 1.5e-212, Sum P(2) = 1.5e-212
 Identities = 347/667 (52%), Positives = 446/667 (66%)

Query:   234 RELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTS 293
             R L  KF+ L   +  LP     L GYP WYRKLC KP +   D +         + D  
Sbjct:   488 RRLQAKFQHLYDQQALLPARRPLLPGYPLWYRKLCRKPPAKRADEI---------LEDDE 538

Query:   294 EAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQ 353
             E W PG S IST MQI PKLLSL W+  PLH+ R  GWG+LVP+ +D +  D   +P+EQ
Sbjct:   539 EPWSPGASEISTGMQIAPKLLSLCWEGYPLHYEREQGWGFLVPFRSDSEGVD--RLPMEQ 596

Query:   354 LKQL--YNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIANVLDKKKLA 411
             L          +    +A  D A + L   VE ++         KR E    +  K++  
Sbjct:   597 LLAHCPVPEFARLSASKAESDMAFDMLPGQVEQHLG--------KR-EHYKKLSQKQQRL 647

Query:   412 EXXXXXXXXXXXXXPREIGF-IKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGVDIG--- 467
             E               +  F +KLPHK+G    VGNPLS+DF+NKF++N L+  D     
Sbjct:   648 ETQYQGSGVWCNKVLDDCCFFLKLPHKNGPSFRVGNPLSKDFLNKFAENVLSSGDPSCQA 707

Query:   468 AKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSG 527
             A R+I+I+RM+SYWRNN +R+  Q VVWL+ + LP       + +   YG I PQ++  G
Sbjct:   708 AARVIDIARMMSYWRNNRDRIMGQMVVWLDSQQLPNEFTGE-KCQPIAYGAICPQVVACG 766

Query:   528 TLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCA 587
             TLTRRA+E TWMTASN+  +R+GSELR+M+QAP GY ++GADVDSQELWIASV+GD+Y  
Sbjct:   767 TLTRRAMEPTWMTASNSRPDRLGSELRSMVQAPPGYRLVGADVDSQELWIASVLGDAYAC 826

Query:   588 KEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQ 647
              EHGATPLGWMTLSG KSN +DMHSITAKAVGISR+HAK+INYARIYGAG+ FAE LL+Q
Sbjct:   827 GEHGATPLGWMTLSGSKSNGSDMHSITAKAVGISRDHAKVINYARIYGAGQLFAETLLRQ 886

Query:   648 FNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDK 707
             FNP  S S+AK+KA KM+++TKGK++YRL++   +EL  R YS YEA  +    N ++ +
Sbjct:   887 FNPTFSASEAKAKAMKMFSITKGKRVYRLREEFHDELEDRAYSSYEASRLAIQRNRTLAE 946

Query:   708 IFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVS--EDDSKFIQTRINW 765
             +F +P W GGTESAMFNRLEEIAT  QP TPFL  RLSRALE  +  E + +F+ TRINW
Sbjct:   947 VFHRPNWQGGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFLPTRINW 1006

Query:   766 VVQSGAVDFLHLMLVCMRWLVSRDTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRA 825
             VVQSGAVDFLHLMLV MRWL+    RF +S HDE+RYLV +E   + ALA+H+TNL+TR+
Sbjct:  1007 VVQSGAVDFLHLMLVSMRWLMGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTRS 1066

Query:   826 FCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQ 885
             FC+ ++ + D+P+S++FFS VE+D VLRKE   DCKTPSNP+GL  GYGI  G+ L + +
Sbjct:  1067 FCVSRIGLQDLPMSVAFFSSVEVDTVLRKECTMDCKTPSNPHGLRIGYGIQPGQSLSVAE 1126

Query:   886 TIDKANG 892
              I+KA G
Sbjct:  1127 AIEKAGG 1133

GO:0006261 "DNA-dependent DNA replication" evidence=ISS;NAS;IDA

GO:0005760 "gamma DNA polymerase complex" evidence=ISS;IDA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS;NAS;IDA

GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=NAS

GO:0005739 "mitochondrion" evidence=ISS;NAS

GO:0006264 "mitochondrial DNA replication" evidence=TAS

GO:0007562 "eclosion" evidence=NAS

GO:0008340 "determination of adult lifespan" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB\|F1SK24 POLG "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P54098 POLG "DNA polymerase subunit gamma-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060303-1 polg "polymerase (DNA directed), gamma" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BDI3 POLG "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QRS5 POLG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1196389 Polg "polymerase (DNA directed), gamma" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|620057 Polg "polymerase (DNA directed), gamma" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q91684 polg "DNA polymerase subunit gamma-1" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P0C5 POLG "DNA polymerase subunit gamma-1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QYV8	DPOG1_RAT	2, ., 7, ., 7, ., 7	0.4303	0.9210	0.6809	yes	N/A
Q01941	DPOG_PICPA	2, ., 7, ., 7, ., 7	0.3299	0.7319	0.6501	yes	N/A
P54099	DPOG1_MOUSE	2, ., 7, ., 7, ., 7	0.4316	0.9154	0.6642	yes	N/A
P54098	DPOG1_HUMAN	2, ., 7, ., 7, ., 7	0.4263	0.9165	0.6650	yes	N/A
Q27607	DPOG1_DROME	2, ., 7, ., 7, ., 7	0.4849	0.9076	0.7126	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.766
4th Layer	2.7.7.7	0.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		899
cd08641		425	cd08641, DNA_pol_gammaA, Pol gammaA is a family A	0.0
pfam00476		383	pfam00476, DNA_pol_A, DNA polymerase family A	2e-73
smart00482		207	smart00482, POLAc, DNA polymerase A domain	1e-49
cd06444		347	cd06444, DNA_pol_A, Family A polymerase primarily	2e-42
COG0749		593	COG0749, PolA, DNA polymerase I - 3'-5' exonucleas	5e-11
cd08643		429	cd08643, DNA_pol_A_pol_I_B, Polymerase I functions	8e-08
cd08641		425	cd08641, DNA_pol_gammaA, Pol gammaA is a family A	1e-06
cd08639		324	cd08639, DNA_pol_A_Aquificae_like, Phylum Aquifica	5e-05
PRK14975		553	PRK14975, PRK14975, bifunctional 3'-5' exonuclease	1e-04

>gnl\|CDD\|176478 cd08641, DNA_pol_gammaA, Pol gammaA is a family A polymerase that is responsible for DNA replication and repair in mitochondria	Back alignment and domain information

 Score =  627 bits (1618), Expect = 0.0
 Identities = 219/403 (54%), Positives = 280/403 (69%), Gaps = 28/403 (6%)

Query: 468 AKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIE-SEGRDYGVILPQLIVS 526
           AKR +EI++M SYWRN  +R+  Q VVW +K +LPR +  + +  E   YG ILPQ++  
Sbjct: 47  AKRALEINKMCSYWRNARDRIMSQMVVWDDKSELPRAVSRHPQDDEEPGYGAILPQVVPM 106

Query: 527 GTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYC 586
           GT+TRRAVE TW+TASNA   RVGSEL+AM+QAP GYS +GADVDSQELWIASV+GD++ 
Sbjct: 107 GTITRRAVEPTWLTASNAKKNRVGSELKAMVQAPPGYSFVGADVDSQELWIASVLGDAHF 166

Query: 587 AKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLK 646
              HGAT +GWMTL G+KS  TD+HS TA  +GISR+HAK+ NY RIYGAG+ FAERLL 
Sbjct: 167 GGIHGATAIGWMTLQGKKSEGTDLHSKTASILGISRDHAKVFNYGRIYGAGQPFAERLLM 226

Query: 647 QFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVD 706
           QFNP ++ ++A  KA++MY  TKG +                        +    +T   
Sbjct: 227 QFNPRLTPAEATEKAKQMYAATKGIR------------------------IAIQRSTKGK 262

Query: 707 KIFDKPQWYGGTESAMFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWV 766
           ++F +P W GG+ES MFN+LEEIA   QP TP L   ++ AL   +   ++F+ +RINWV
Sbjct: 263 RLFKRPFWSGGSESIMFNKLEEIAAQSQPRTPVLGACITSALLEPNLVKNEFMTSRINWV 322

Query: 767 VQSGAVDFLHLMLVCMRWLVSR---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLT 823
           VQS AVD+LHLMLV MRWL+ +   D RF ISIHDE+RYLV +E+KY  ALAL +TNLLT
Sbjct: 323 VQSSAVDYLHLMLVSMRWLIEKYDIDARFCISIHDEVRYLVKEEDKYRAALALQITNLLT 382

Query: 824 RAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNP 866
           RA   +KL + D+P S++FFS V+ID VLRKE D DC TPSNP
Sbjct: 383 RAMFAQKLGINDLPQSVAFFSAVDIDTVLRKEVDMDCVTPSNP 425

DNA polymerase gamma (Pol gamma), 5'-3' polymerase domain (Pol gammaA). Pol gammaA is a family A polymerase that is responsible for DNA replication and repair in mitochondria. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified into six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class X), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerases are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I, mitochondrial polymerase gammaA, and several bacteriophage polymerases including those from odd-numbered phage (T3, T5, and T7). The structure of these polymerases resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains. Pol gammaA has also the right hand configuration. Pol gammaA has both polymerase and proofreading exonuclease activities separated by a spacer. Pol gamma holoenzyme is a heterotrimer containing one Pol gammaA subunit and a dimeric Pol gammaB subunit. Pol gamma is important for mitochondria DNA maintenance and mutation of the catalytic subunit of Pol gamma is implicated in more than 30 human diseases. Length = 425

>gnl\|CDD\|201250 pfam00476, DNA_pol_A, DNA polymerase family A	Back alignment and domain information

>gnl\|CDD\|214687 smart00482, POLAc, DNA polymerase A domain	Back alignment and domain information

>gnl\|CDD\|176473 cd06444, DNA_pol_A, Family A polymerase primarily fills DNA gaps that arise during DNA repair, recombination and replication	Back alignment and domain information

>gnl\|CDD\|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|176480 cd08643, DNA_pol_A_pol_I_B, Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication	Back alignment and domain information

>gnl\|CDD\|176478 cd08641, DNA_pol_gammaA, Pol gammaA is a family A polymerase that is responsible for DNA replication and repair in mitochondria	Back alignment and domain information

>gnl\|CDD\|176476 cd08639, DNA_pol_A_Aquificae_like, Phylum Aquificae Pol A is different from Escherichia coli Pol A by three signature sequences	Back alignment and domain information

>gnl\|CDD\|237876 PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		899
KOG3657\|consensus		1075		100.0
cd08641		425	DNA_pol_gammaA Pol gammaA is a family A polymerase	100.0
COG0749		593	PolA DNA polymerase I - 3'-5' exonuclease and poly	100.0
cd06444		347	DNA_pol_A Family A polymerase primarily fills DNA	100.0
PF00476		383	DNA_pol_A: DNA polymerase family A; InterPro: IPR0	100.0
cd08638		373	DNA_pol_A_theta DNA polymerase theta is a low-fide	100.0
TIGR00593		887	pola DNA polymerase I. This family is based on the	100.0
cd08640		371	DNA_pol_A_plastid_like DNA polymerase A type from	100.0
cd08637		377	DNA_pol_A_pol_I_C Polymerase I functions primarily	100.0
cd08643		429	DNA_pol_A_pol_I_B Polymerase I functions primarily	100.0
cd08639		324	DNA_pol_A_Aquificae_like Phylum Aquificae Pol A is	100.0
PRK14975		553	bifunctional 3'-5' exonuclease/DNA polymerase; Pro	100.0
PRK05755		880	DNA polymerase I; Provisional	100.0
cd08642		378	DNA_pol_A_pol_I_A Polymerase I functions primarily	100.0
smart00482		206	POLAc DNA polymerase A domain.	100.0
KOG3657\|consensus		1075		99.49
COG0749		593	PolA DNA polymerase I - 3'-5' exonuclease and poly	98.1
PF01612		176	DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00	91.6
cd06146		193	mut-7_like_exo DEDDy 3'-5' exonuclease domain of C	84.15
PF10108		209	DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate	82.59
cd06141		170	WRN_exo DEDDy 3'-5' exonuclease domain of WRN and	82.29

>KOG3657\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.3e-207  Score=1748.22  Aligned_cols=753  Identities=48%  Similarity=0.830  Sum_probs=675.1

Q ss_pred             CCcccccccccHHHHHHHhcCCccCCcccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhCCCcchh
Q psy15891          4 ESWTNVSSLNSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPHPVTL   83 (899)
Q Consensus         4 ~~W~~~sS~NsL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F~~~~~~~~~~   83 (899)
                      .+|+++||+|||+|||+|||++.++||+.||+||++++++|++|||+||+|||+||.|||+||+++||+|          
T Consensus       314 ~pWL~~SS~NSL~dVhk~~c~~~~LdKt~Rd~Fvs~~~e~Ire~fq~L~~YCA~Dv~aThqVf~~lfP~F----------  383 (1075)
T KOG3657|consen  314 NPWLGRSSLNSLVDVHKFHCGIDALDKTPRDSFVSGTKEQIRENFQPLMNYCARDVIATHQVFFRLFPLF----------  383 (1075)
T ss_pred             hhhhhhhhhHHHHHHHHhhCCCCccccchHHhhhcCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHH----------
Confidence            3599999999999999999955569999999999999999999999999999999999999999999999          


Q ss_pred             hhhhccccccccCchhhHHHHHhhcchhhhcCCCcchhhhhhccccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15891         84 AGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDK  163 (899)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PHPvt~agml~mgs~~LPvn~~W~~y~~~ae~~y~~~~~~~~~~L~~~  163 (899)
                                                  +|||||||||||||+|||+|||||+||++||+++|++|++++.+++++|+++
T Consensus       384 ----------------------------lercPHPaTlagMLsmGsvyLPvN~nW~rYin~~e~tYeq~~~~~~~kl~~~  435 (1075)
T KOG3657|consen  384 ----------------------------LERCPHPATLAGMLSMGSVYLPVNSNWERYINEAEQTYEQLKTEAKRKIIES  435 (1075)
T ss_pred             ----------------------------HHhCCChHhHHHHHhcCcEEeeccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                        9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCccCCcccccCCCCchhhhhccccccccccCcccCCcchhhhhccCCCCchhHHHHHHHHHHHHhhccc
Q psy15891        164 CDQACSLLHDDKYKDSLWLWDQDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQTEDEFVKRRRELVEKFKPL  243 (899)
Q Consensus       164 a~~a~~~~~~~~~~~DpWl~~ldWs~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l  243 (899)
                      |++||+++.|+.|++|||||++||+.|++|++|+                                              
T Consensus       436 A~~a~~LL~d~~y~~d~wlW~~dw~~~~lk~~~k----------------------------------------------  469 (1075)
T KOG3657|consen  436 ARDACKLLDDDPYKNDPWLWDLDWTFQELKLKKK----------------------------------------------  469 (1075)
T ss_pred             HHHHHHHhcCCchhccchhcccchhhHHHHHhhc----------------------------------------------
Confidence            9999999999999999999999999999887652                                              


Q ss_pred             cccccCCCCCCCCCCCChhhhHhhhcCCCCCCchhhhhhhhcccCCCCCCCCCCCCCcccccccchhhhhhccccCCcce
Q psy15891        244 MQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSLISTSMQITPKLLSLTWKSMPL  323 (899)
Q Consensus       244 ~~~~~~~p~~~~~~~g~P~Wyr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~is~~~ri~P~LlrL~W~g~Pl  323 (899)
                           ++|++.++|||+|.|||+||+. +                     ++|.|   .|+++|||+|+|+.|+|+|+||
T Consensus       470 -----g~p~~~~~Lpg~p~wyrkl~p~-~---------------------~~~sp---~isl~~~i~p~l~~l~we~~pl  519 (1075)
T KOG3657|consen  470 -----GLPARKQFLPGSPEWYRKLCPS-D---------------------EVWSP---HISLKSRIIPKLFGLVWEGFPL  519 (1075)
T ss_pred             -----CCchhhhcCCCCchhhhhcCCC-C---------------------CCCCC---CCchhhhhHHHHHhhccCCchh
Confidence                 3678899999999999999943 1                     56777   8999999999999999999999


Q ss_pred             eEEcCcceEEeecCCCCCCCCCccCCchHHhhhhhcccccccccccccchhhhhhhhcccccchhhhchhhhhhHHHHHh
Q psy15891        324 HFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQLYNNITKQDNCEANVDNAQNSLRDSVETNISFIDCSKSAKRLEVIAN  403 (899)
Q Consensus       324 ~~~~~~GW~f~VP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  403 (899)
                      ||++++||||+||++.+.          |+++..-       +....+|...+.+...++..+..+++++.+.+...+  
T Consensus       520 ~~sr~~gwgflvp~~~~~----------e~~~~A~-------~~~~~sD~~~d~~~~~~e~~~~~~~~~~~~~~~~~~--  580 (1075)
T KOG3657|consen  520 HYSREKGWGFLVPNRKDV----------EKLLQAD-------PNFHEIDAKIDFLPDEAEKKFPNRSFYETLQNNVGM--  580 (1075)
T ss_pred             hhhhhcCceeecCCcchH----------HHHhhcc-------cchhhcchhhhcccchhhhcccccchhhHHhccCcc--
Confidence            999999999999999874          2333200       011233445667777777777777788776544332  


Q ss_pred             hhhhhhhcccCCCCCCCCCCCCCCeeEEEeccCCCCCCCCCCCCcchhhhhHhhcCCCCCC--chHHHHHHHHHhhhhhh
Q psy15891        404 VLDKKKLAEASSTDTSTDDADTPREIGFIKLPHKDGEHLNVGNPLSRDFINKFSDNSLAGV--DIGAKRIIEISRMLSYW  481 (899)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~klPHkdG~~~nvg~plsK~fl~~fe~g~L~s~--~~~a~~~le~~~~~syW  481 (899)
                         +....+|.|+++|.+     ++|+|||||||+|+..|||+||+|||+++|++|+|+++  .+.|..+|++|.|+|||
T Consensus       581 ---~~~q~~g~g~~~~~~-----~~~~f~Klph~~G~S~nvg~pltk~fl~~~~~~vl~~~~~~~~~~r~ldi~~~~s~w  652 (1075)
T KOG3657|consen  581 ---LGTQPDGKGVELDEA-----GLCRFFKLPHPNGPSFNVGNPLTKDFLKKFEEGVLRSGRYEEYADRVLDINQMTSFW  652 (1075)
T ss_pred             ---ccccCCCcceeeccc-----ceeeeeecCCCCCCCCccCCcchHhhhhHHHhcccccccccchHHHHHHHHHHHHHH
Confidence               223347999999865     37999999999999999999999999999999999996  58999999999999999


Q ss_pred             hhhhhhhhcceeEecccCCCchhhhhcccccCCCCCeEeeeeeeccccccccccCccceecCCCCCcccccccceEecCC
Q psy15891        482 RNNHERVKKQFVVWLNKKDLPRRLVENIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPD  561 (899)
Q Consensus       482 ~s~r~Ri~~q~vv~~~~~~l~~~~~~~~~~~~~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~GselRs~f~App  561 (899)
                      +|+|+||++|||||++...||+.+....+ ....+|.|.|+++++||+|+||+|+||+|+||..++++|++||+|++|||
T Consensus       653 ~s~~~ri~Sqmvvwlp~~~lP~~~~~~~~-k~~~~gaI~p~vvp~gtitrrave~tw~tasNs~~~Rigselkamvqapp  731 (1075)
T KOG3657|consen  653 RSARDRICSQMVVWLPSATLPNAFNLNNE-KEMIYGAIAPQVVPAGTITRRAVEPTWLTASNARPDRIGSELKAMVQAPP  731 (1075)
T ss_pred             HHHhhhhhhheeEecccccCchhhhhccc-chhhhhccCccccccchhhhhhhhhhhhhhcccChhhhhHHHHHhhcCCC
Confidence            99999999999999999999987654211 35778999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEeccchhhhhhhhcccccccccccccccccccccCccCCCCchhHHHHHHhccchhhhhHHHHHHhhcccHHHH
Q psy15891        562 GYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFA  641 (899)
Q Consensus       562 Gy~~VgAD~SqiELRIlal~gDA~~s~~~g~~Afg~m~LeG~K~~GtDlHs~tAs~lGisR~~AKv~nyG~iYGaG~k~A  641 (899)
                      ||+|||||++++|+||+|++|||++.+.||.+|||||+|+|.|++|+|+|+.||+++||||++||+||||+|||+|++||
T Consensus       732 gy~LVgaDvdsqElwiaa~lgda~~~~~hg~ta~gwM~Lag~ks~gtdlhs~ta~~lgiSr~hakv~Ny~riygag~~fa  811 (1075)
T KOG3657|consen  732 GYRLVGADVDSQELWIAALLGDASAEGVHGKTAFGWMTLAGSKSDGTDLHSKTASQLGISRNHAKVFNYARIYGAGQTFA  811 (1075)
T ss_pred             cceEeeccccHHHHHHHHHhhhhhhhcccCcchhhhhhhcCccccCchHhHhhhhhccccHhhhhhccHHHHhcCCcchH
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHhChhhHHHHhhhhHHHHHHhcCeeecchhhhhcccCCcccccCCCccccCCCchh
Q psy15891        642 ERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESA  721 (899)
Q Consensus       642 ~~La~q~n~~lS~eEA~~~~~~f~~~~pgv~~~~~~~e~~~~a~e~GyV~~~~~~~~~~~~~~v~tl~GRrr~~gGteS~  721 (899)
                      .+|++++||.++.+||+..+.++|..++|.+.++.+++......+..+..+..-++....+..-...+-||.|.|||||.
T Consensus       812 ~~ll~~fnp~l~~~Ea~~~A~~l~~~tkG~~~~rlk~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gg~es~  891 (1075)
T KOG3657|consen  812 EKLLMRFNPSLTQSEAKSKASQLFKLTKGDRAKRLKVEVRMVENSLVCKILTIDGIYLIYSIYENEVEPRRLWVGGTESS  891 (1075)
T ss_pred             HHhHHhhCCCCchHHHHHHHHHHHHhhcCceeeehHhHHHHhhhhhhchhhhhhhhhhhhhhhhcccchhhhccCchHHH
Confidence            99999999999999999999999999999888766644211111111111100011111111112567899999999999


Q ss_pred             hhhhhHHHhhccCCCccccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHHHHhccCCc---eeEEEecc
Q psy15891        722 MFNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDT---RFVISIHD  798 (899)
Q Consensus       722 ~Fn~LE~iA~~~~PrtP~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m~~L~~~~~---rlvlsVHD  798 (899)
                      |||+||+||.++.||||+|||+|+++|++.+....+|+++++||+|||||+||||+++|+|+||++.|+   ||||+|||
T Consensus       892 ~fn~lesia~~~~prtpvlgc~is~sl~~~~~~~~~f~~srinwvvqssavd~lhlllvsm~wl~~~y~i~~rfcisihd  971 (1075)
T KOG3657|consen  892 MFNKLESIATAHDPRTPVLGCQISRSLEKLPEGEPKFLPSRINWVVQSSAVDFLHLLLVSMQWLCDTYKIDARFCISIHD  971 (1075)
T ss_pred             HHHHHHHHhhccCCCCCeeccchhhhhcccccCCcccccceeeEEeeccchhHHHHHHHHHHHHHhhcccceEEEEEehH
Confidence            999999999999999999999999999999866678999999999999999999999999999999886   99999999


Q ss_pred             eeEEecCcchHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccccccccccccCCCccCCCCccCCCccccCCCC
Q psy15891        799 EIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLG  878 (899)
Q Consensus       799 EI~~eVpee~~~~aA~aLqianl~tramf~~~lg~~dlP~svAffs~vdid~vlRKEv~~dc~TPSnp~~~~~~y~Ip~G  878 (899)
                      ||||+|.|++++|+|+||||+|||||+||++|+||+||||+|||||+||||+||||||+|||+||||||||+.+|||++|
T Consensus       972 evrylv~e~d~~raalalqisnl~tr~~~~~r~gi~~lp~svaffs~vdidtvlrkev~mdc~tpsnp~g~~~~ygi~~g 1051 (1075)
T KOG3657|consen  972 EVRYLVKEEDAPRAALALQISNLLTRAMFSQRVGINDLPQSVAFFSQVDIDTVLRKEVTMDCITPSNPHGLEDDYGITGG 1051 (1075)
T ss_pred             hHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccHHHHHHHhcccccCCCCCCCccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHhcCCCCCCCC
Q psy15891        879 EILDIYQTIDKANGVIGTFK  898 (899)
Q Consensus       879 esldi~~~l~~~~g~l~~~~  898 (899)
                      +||||+|+||+++|.++.|+
T Consensus      1052 ~sldi~q~ie~~~~d~~k~~ 1071 (1075)
T KOG3657|consen 1052 KSLDIAQLIENRRGDENKKK 1071 (1075)
T ss_pred             ccccHHHHHHHccCchhhhh
Confidence            99999999999999988875

>cd08641 DNA_pol_gammaA Pol gammaA is a family A polymerase that is responsible for DNA replication and repair in mitochondria	Back alignment and domain information

>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]	Back alignment and domain information

>cd06444 DNA_pol_A Family A polymerase primarily fills DNA gaps that arise during DNA repair, recombination and replication	Back alignment and domain information

>PF00476 DNA_pol_A: DNA polymerase family A; InterPro: IPR001098 Synonym(s): DNA nucleotidyltransferase (DNA-directed) DNA-directed DNA polymerases(2	Back alignment and domain information

>cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation	Back alignment and domain information

>TIGR00593 pola DNA polymerase I	Back alignment and domain information

>cd08640 DNA_pol_A_plastid_like DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication	Back alignment and domain information

>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication	Back alignment and domain information

>cd08643 DNA_pol_A_pol_I_B Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication	Back alignment and domain information

>cd08639 DNA_pol_A_Aquificae_like Phylum Aquificae Pol A is different from Escherichia coli Pol A by three signature sequences	Back alignment and domain information

>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	Back alignment and domain information

>PRK05755 DNA polymerase I; Provisional	Back alignment and domain information

>cd08642 DNA_pol_A_pol_I_A Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication	Back alignment and domain information

>smart00482 POLAc DNA polymerase A domain	Back alignment and domain information

>KOG3657\|consensus	Back alignment and domain information

>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]	Back alignment and domain information

>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides	Back alignment and domain information

>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins	Back alignment and domain information

>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins	Back alignment and domain information

>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		899
3ikm_A		1172	Crystal Structure Of Human Mitochondrial Dna Polyme		0.0

>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase Holoenzyme Length = 1172

Back alignment and structure

Iteration: 1

Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/955 (42%), Positives = 537/955 (56%), Gaps = 134/955 (14%) Query: 6 WTNVSSLNS--LSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATF 63 W ++SS+NS L+EV++LY G L+K R +FV+G+++DI N+ +LM YCA+D AT Sbjct: 278 WLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATH 337 Query: 64 EVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAG 123 EV Q PLFLER PHPVTLAG Sbjct: 338 --------------------------------------EVFQQQLPLFLERCPHPVTLAG 359 Query: 124 MLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKDSLWLW 183 MLE+ +YLPVN NW +Y E+ T+ +L EMK LMD + AC LL ++YK+ WLW Sbjct: 360 MLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYKEDPWLW 419 Query: 184 DQDWSVXXXXXXXXXXXXXSVDQETEEPEEFYEINKNGEDQT-------EDEFVK--RRR 234 D +W + ++ P E + DQ E+EF + R Sbjct: 420 DLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQQDVMAR 479 Query: 235 ELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSE 294 ++K K T + LP +L G+P WYRKLC + + D Sbjct: 480 ACLQKLK---GTTELLPKRPQHLPGHPGWYRKLCPR------------------LDDP-- 516 Query: 295 AWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTD--IKVPDAENI--- 349 AW PGPSL+S M++TPKL++LTW PLH+ HGWGYLVP D K+P + Sbjct: 517 AWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESA 576 Query: 350 ----PLEQLKQLY---------NNITKQDNCEAN----VDNAQNSLRDSVETNISFIDCS 392 P ++ LY + Q+ A DN +++ +VE + +++ Sbjct: 577 GVVCPYRAIESLYRKHCLEQGKQQLMPQEAGLAEEFLLTDN--SAIWQTVE-ELDYLEVE 633 Query: 393 KSAKRLEVIANVLDKKKLAEXXXXXXXXXXXXXPREIG-----------FIKLPHKDGEH 441 AK +E + + + LA G F KLPHKDG Sbjct: 634 AEAK-MENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNS 692 Query: 442 LNVGNPLSRDFINKFSDNSLAGVDIGAK--RIIEISRMLSYWRNNHERVKKQFVVWLNKK 499 NVG+P ++DF+ K D +L GA R +EI++M+S+WRN H+R+ Q VVWL + Sbjct: 693 CNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRS 752 Query: 500 DLPRRLVE--NIESEGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMI 557 LPR ++ + + EG YG ILPQ++ +GT+TRRAVE TW+TASNA +RVGSEL+AM+ Sbjct: 753 ALPRAVIRHPDYDEEGL-YGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMV 811 Query: 558 QAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKA 617 QAP GY+++GADVDSQELWIA+V+GD++ A HG T GWMTL G+KS TD+HS TA Sbjct: 812 QAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATT 871 Query: 618 VGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLK 677 VGISREHAKI NY RIYGAG+ FAERLL QFN +++ +A KA++MY TKG + YRL Sbjct: 872 VGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLS 931 Query: 678 DGHLEELIKRVYSKYE---------------AREVCSAYNTSVDKIFDKPQWYGGTESAM 722 D E L++ + + RE ++ + W GGTES M Sbjct: 932 D-EGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEM 990 Query: 723 FNRLEEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCM 782 FN+LE IATS P TP L C +SRALEP S +F+ +R+NWVVQS AVD+LHLMLV M Sbjct: 991 FNKLESIATSDIPRTPVLGCCISRALEP-SAVQEEFMTSRVNWVVQSSAVDYLHLMLVAM 1049 Query: 783 RWLVSR---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLS 839 +WL D RF ISIHDE+RYLV +E++Y ALAL +TNLLTR KL + D+P S Sbjct: 1050 KWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQS 1109 Query: 840 ISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGVI 894 ++FFS V+ID+ LRKE DCKTPSNP G+ + YGIP GE LDIYQ I+ G + Sbjct: 1110 VAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKGSL 1164

PyMOL of 3ikm

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		899
3ikm_A		1172	DNA polymerase subunit gamma-1; human mitochondria	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1x9m_A		698	DNA polymerase; DNA ploymerase, N-2-acetylaminoflu	3e-04

>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Length = 1172	Back alignment and structure

 Score =  731 bits (1887), Expect = 0.0
 Identities = 389/949 (40%), Positives = 518/949 (54%), Gaps = 116/949 (12%)

Query: 1    MTDESWTNVSSL--NSLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKD 58
            ++   W ++SS+  NSL+EV++LY  G  L+K  R +FV+G+++DI  N+ +LM YCA+D
Sbjct: 273  ISSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQD 332

Query: 59   TLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHP 118
              AT EV Q   PLFLER PHPVTLAGMLE+  +YLP                       
Sbjct: 333  VWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLP----------------------- 369

Query: 119  VTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSLLMDKCDQACSLLHDDKYKD 178
                           VN NW +Y  E+  T+ +L  EMK  LMD  + AC LL  ++YK+
Sbjct: 370  ---------------VNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYKE 414

Query: 179  SLWLWDQDWSVKDLKLKKKANKTLSVDQETEEPEEFYEINKNGEDQT------EDEFVKR 232
              WLWD +W +++ K KK           ++ P E      +  DQ       E+E  ++
Sbjct: 415  DPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQQ 474

Query: 233  RRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDT 292
                    + L  T + LP    +L G+P WYRKLC +                      
Sbjct: 475  DVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRL--------------------D 514

Query: 293  SEAWIPGPSLISTSMQITPKLLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLE 352
              AW PGPSL+S  M++TPKL++LTW   PLH+   HGWGYLVP   D          LE
Sbjct: 515  DPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLE 574

Query: 353  QLKQLYNNITKQDNCEANVDNAQNSLRDSVET-------------------NISFIDCSK 393
                +      +     +            E                     + +++   
Sbjct: 575  SAGVVCPYRAIESLYRKHCLEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEA 634

Query: 394  SAKRLEVIANVLDK----------KKLAEASSTDTSTDDADTPREIGFIKLPHKDGEHLN 443
             AK   + A V  +          K    +        +        F KLPHKDG   N
Sbjct: 635  EAKMENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVDIPGCWFFKLPHKDGNSCN 694

Query: 444  VGNPLSRDFINKFSDNSLAGVDIGAK--RIIEISRMLSYWRNNHERVKKQFVVWLNKKDL 501
            VG+P ++DF+ K  D +L     GA   R +EI++M+S+WRN H+R+  Q VVWL +  L
Sbjct: 695  VGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSAL 754

Query: 502  PRRLVENIES-EGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAP 560
            PR ++ + +  E   YG ILPQ++ +GT+TRRAVE TW+TASNA  +RVGSEL+AM+QAP
Sbjct: 755  PRAVIRHPDYDEEGLYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAP 814

Query: 561  DGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATDMHSITAKAVGI 620
             GY+++GADVDSQELWIA+V+GD++ A  HG T  GWMTL G+KS  TD+HS TA  VGI
Sbjct: 815  PGYTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGI 874

Query: 621  SREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGKKLYRLKDGH 680
            SREHAKI NY RIYGAG+ FAERLL QFN  +++ +A  KA++MY  TKG + YRL D  
Sbjct: 875  SREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEG 934

Query: 681  --LEELIKRVYSKYEAREV------------CSAYNTSVDKIFDKPQWYGGTESAMFNRL 726
              L   +     + E   +                     ++  +  W GGTES MFN+L
Sbjct: 935  EWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKL 994

Query: 727  EEIATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLV 786
            E IATS  P TP L C +SRALEP S    +F+ +R+NWVVQS AVD+LHLMLV M+WL 
Sbjct: 995  ESIATSDIPRTPVLGCCISRALEP-SAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLF 1053

Query: 787  SR---DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFF 843
                 D RF ISIHDE+RYLV +E++Y  ALAL +TNLLTR     KL + D+P S++FF
Sbjct: 1054 EEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFF 1113

Query: 844  SGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANG 892
            S V+ID+ LRKE   DCKTPSNP G+ + YGIP GE LDIYQ I+   G
Sbjct: 1114 SAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKG 1162

PyMOL of 3ikm

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Length = 698	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		899
3ikm_A		1172	DNA polymerase subunit gamma-1; human mitochondria	100.0
3pv8_A		592	DNA polymerase I; DNA polymerase I, protein-DNA co	100.0
4dfk_A		540	DNA polymerase I, thermostable; DNA polymerase, tr	100.0
2kfn_A		605	Klenow fragment of DNA polymerase I; complex (poly	100.0
1bgx_T		832	TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi	100.0
1x9m_A		698	DNA polymerase; DNA ploymerase, N-2-acetylaminoflu	100.0
3ikm_A		1172	DNA polymerase subunit gamma-1; human mitochondria	97.9
1noy_A		388	Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas	82.22

>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.3e-243  Score=2129.05  Aligned_cols=824  Identities=46%  Similarity=0.803  Sum_probs=706.4

Q ss_pred             CCCCcccccccc--cHHHHHHHhcCCccCCcccccccccCCHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhhhhCCC
Q psy15891          2 TDESWTNVSSLN--SLSEVYKLYCEGKVLDKTDRNIFVEGSLEDIENNWHNLMTYCAKDTLATFEVIQALFPLFLERFPH   79 (899)
Q Consensus         2 ~~~~W~~~sS~N--sL~dV~~~~c~g~~~dK~~Rd~F~~~~~~~i~~~f~~Lm~YCA~DV~aT~~v~~~l~P~F~~~~~~   79 (899)
                      ++++|+++||+|  ||+|||+|||++.+|||++||+||+|+++||++|||+||+|||+||.|||+||++|||+|      
T Consensus       274 ~~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F------  347 (1172)
T 3ikm_A          274 SSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLF------  347 (1172)
T ss_dssp             --CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             cCCCcccccCCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------
Confidence            467899999999  999999999955699999999999999999999999999999999999999999999999      


Q ss_pred             cchhhhhhccccccccCchhhHHHHHhhcchhhhcCCCcchhhhhhccccccccCCccHHHHHHHHHHHHHHHHHHHHHH
Q psy15891         80 PVTLAGMLELSTAYLPDTLATFEVIQALFPLFLERFPHPVTLAGMLELSTAYLPVNNNWVKYFNESCQTFNDLNVEMKSL  159 (899)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PHPvt~agml~mgs~~LPvn~~W~~y~~~ae~~y~~~~~~~~~~  159 (899)
                                                      ++||||||||||||||||+|||||+||++||++||.+|++++.+|+++
T Consensus       348 --------------------------------~ercPHPVsfAgml~mgs~~LPVn~~W~~Yi~~ae~~Y~~~~~ev~~~  395 (1172)
T 3ikm_A          348 --------------------------------LERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKS  395 (1172)
T ss_dssp             --------------------------------HTTSCCSHHHHHHHHHHSCCCCCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------HHhCCCchhHHHHHHhCCccccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence                                            999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCccCCcccccCCCCchhhhhccccccccccCcccC-------CcchhhhhccCCCCchhHHHHHH
Q psy15891        160 LMDKCDQACSLLHDDKYKDSLWLWDQDWSVKDLKLKKKANKTLSVDQETE-------EPEEFYEINKNGEDQTEDEFVKR  232 (899)
Q Consensus       160 L~~~a~~a~~~~~~~~~~~DpWl~~ldWs~~~~k~~k~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~  232 (899)
                      |+++|++||++++++.|++||||||||||+|++||||.+++||.......       ++....+.+++|.+.+++++. .
T Consensus       396 L~~lA~~a~~l~~~~~yk~DpWL~qLDWs~q~~k~kk~~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~-~  474 (1172)
T 3ikm_A          396 LMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQ-Q  474 (1172)
T ss_dssp             HHHHHHHHHHHCCCSCTTSTHHHHHHHHCCCSCCCCCCCSCSCCCCCSSCCCCCCCSSSCCCCCCCCCCCSSCCSSSS-H
T ss_pred             HHHHHHHHHHhhccccccCCchHhhccCCcccccccccccccccccccccccccccCCcccccccccCCCchhhhhhh-c
Confidence            99999999999999999999999999999999999998765552222111       111112346678777766655 3


Q ss_pred             HHHHHHhhccccccccCCCCCCCCCCCChhhhHhhhcCCCCCCchhhhhhhhcccCCCCCCCCCCCCCcccccccchhhh
Q psy15891        233 RRELVEKFKPLMQTKDRLPVNSSYLIGYPEWYRKLCVKPHSADKDAVSKQELIHDGISDTSEAWIPGPSLISTSMQITPK  312 (899)
Q Consensus       233 ~~~~~~~~~~l~~~~~~~p~~~~~~~g~P~Wyr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~is~~~ri~P~  312 (899)
                      ......+|++|++|.+++|+++|+|||||+|||+||++...                    ++|.|||++||++|||+|+
T Consensus       475 ~~~~~~~~~~l~~t~~~~P~~~~~lpG~P~WYr~L~~~~~~--------------------~~w~~~~~~is~~~ri~P~  534 (1172)
T 3ikm_A          475 DVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDD--------------------PAWTPGPSLLSLQMRVTPK  534 (1172)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSSSSSSCCCCSSCCSSCCCC--------------------CCCCSSSCCTTTTSTTTTT
T ss_pred             ccchhhhhhhhhhcccccchhccCCCCCCHHHHHHhccccc--------------------cccCCCcccccccccHHHH
Confidence            45567789999999999999999999999999999997643                    7899999999999999999


Q ss_pred             hhccccCCcceeEEcCcceEEeecCCCCCCCCCccCCchHHhhhh----hcccccc--------------cccccccchh
Q psy15891        313 LLSLTWKSMPLHFIRGHGWGYLVPYSTDIKVPDAENIPLEQLKQL----YNNITKQ--------------DNCEANVDNA  374 (899)
Q Consensus       313 LlrL~W~g~Pl~~~~~~GW~f~VP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------------~~~~~~~~~~  374 (899)
                      ||||+|+||||||+++|||||+||++.+++    .+.|++++.+.    | |+++.              ++...+.+++
T Consensus       535 LLrL~W~g~PL~~s~~~GW~flVP~~~d~~----~~~p~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (1172)
T 3ikm_A          535 LMALTWDGFPLHYSERHGWGYLVPGRRDNL----AKLPTGTTLESAGVVC-PYRAIESLYRKHCLEQGKQQLMPQEAGLA  609 (1172)
T ss_dssp             TTTCCCTTSCSCCCSSSCBCCCCCCSSSCC----CCCSHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HhhcccCCcceeEECCCCceEecCCccccc----cccccchhhhcccccC-chhHHHhhhhhhhhhhccccccccccchh
Confidence            999999999999999999999999987753    36777776654    5 54431              1223455667


Q ss_pred             hhhhhhcccccchhhhchhhhhhHHH--HH------------------hhhhhhhhcccCCCCCCCCCCCCCCeeEEEec
Q psy15891        375 QNSLRDSVETNISFIDCSKSAKRLEV--IA------------------NVLDKKKLAEASSTDTSTDDADTPREIGFIKL  434 (899)
Q Consensus       375 ~~~l~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~kl  434 (899)
                      ++.+.++....|..++++++++....  +.                  ....+|.+|+|+|+|||++   +++ |+||||
T Consensus       610 ~~~~~~~~~~~w~~~~~~~~~e~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~g~~~d~~---~~~-~~ffKL  685 (1172)
T 3ikm_A          610 EEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVD---IPG-CWFFKL  685 (1172)
T ss_dssp             ---------------------------------CCSCSSHHHHHHSSCSCSSCCTTCSSCCTTTSCC---TTC-CCBCCC
T ss_pred             hhhhhccccccchhhhhhhhhhhccccccccccccccccccccccccccccccccccccCCcccccc---CCC-ceEEeC
Confidence            77888887777877777666532211  00                  0114677899999999987   777 999999


Q ss_pred             cCCCCCCCCCCCCcchhhhhHhhcCCCCC--CchHHHHHHHHHhhhhhhhhhhhhhhcceeEecccCCCchhhhhcccc-
Q psy15891        435 PHKDGEHLNVGNPLSRDFINKFSDNSLAG--VDIGAKRIIEISRMLSYWRNNHERVKKQFVVWLNKKDLPRRLVENIES-  511 (899)
Q Consensus       435 PHkdG~~~nvg~plsK~fl~~fe~g~L~s--~~~~a~~~le~~~~~syW~s~r~Ri~~q~vv~~~~~~l~~~~~~~~~~-  511 (899)
                      |||||+++||||||||+|+++||+|+|+|  ++++|++||+||++||||+|+|+||++|||||+++.++|+.+..++++ 
T Consensus       686 PHkdG~~~nvgsPLsK~fl~~fE~G~L~s~~~~~~A~~aLe~n~~~SYW~saRdRI~sQmVVw~~~~~~p~~~~~~~~~~  765 (1172)
T 3ikm_A          686 PHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAVIRHPDYD  765 (1172)
T ss_dssp             CCTTTCSSCCCCSSCSTHHHHHHTSSCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSSSTTTTTTTTCCC
T ss_pred             CCCCCCCCCcCCcccHHHHHHHHhCccccccCcHHHHHHHHHHHHhHHHHHHHHHhhhheEEeecccccccccccccccc
Confidence            99999999999999999999999999999  679999999999999999999999999999999999999888877765 


Q ss_pred             cCCCCCeEeeeeeeccccccccccCccceecCCCCCcccccccceEecCCCceEEEEeccchhhhhhhhccccccccccc
Q psy15891        512 EGRDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHG  591 (899)
Q Consensus       512 ~~~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~GselRs~f~AppGy~~VgAD~SqiELRIlal~gDA~~s~~~g  591 (899)
                      +++..|+|||+++++||+||||+|+|||||+||+.+++|++||+||+||+||+|||||||||||||++++||+.+++.|+
T Consensus       766 ~~~~~g~I~p~v~~~GtvT~Ra~~~~~~tas~~~~~~~GreiR~aFva~~G~~lvsADySQIELRIAals~D~~l~~~~g  845 (1172)
T 3ikm_A          766 EEGLYGAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHG  845 (1172)
T ss_dssp             SSSCCCBCCCCCCSSCTTTCCCCCTTGGGCCCCSSCSTTSCCHHHHCCCTTEEEEEEECTTHHHHHHHHHHHHHSSSTTC
T ss_pred             ccccCceeeeeeeecCccccccccCCcceecCCCCChhhHHhHheEeCCCCCEEEEecccHHHHHHHHHcCChhhccccc
Confidence            56689999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             ccccccccccCccCCCCchhHHHHHHhccchhhhhHHHHHHhhcccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhChhh
Q psy15891        592 ATPLGWMTLSGQKSNATDMHSITAKAVGISREHAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLTKGK  671 (899)
Q Consensus       592 ~~Afg~m~LeG~K~~GtDlHs~tAs~lGisR~~AKv~nyG~iYGaG~k~A~~La~q~n~~lS~eEA~~~~~~f~~~~pgv  671 (899)
                      ++|||||+|+|++.+|+|||+.||+.+||+|+.||++|||+|||+|.+||.+|++++|+++|.+||++++++||+.|||+
T Consensus       846 ~~A~~~~~L~~af~~g~DIH~~TA~~vgi~Rr~AK~vNFGiIYG~g~~~a~gL~~ql~~~is~~eAk~~i~~yf~~y~gv  925 (1172)
T 3ikm_A          846 CTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGL  925 (1172)
T ss_dssp             STTTTTTCSCCTTTCTHHHHHHHHHTTCCCSHHHHHHHHHHHHSCCTHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHCS
T ss_pred             ccchhhhhhhhhhccCCcHHHHHHHHhCCChhhchheeeehhcCCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCcCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhh---HHHHHH------hcCeeecchhh-hhcccCC-----cccccCCCccccCCCchhhhhhhHHHhhccCCC
Q psy15891        672 KLYRLKDG---HLEELI------KRVYSKYEARE-VCSAYNT-----SVDKIFDKPQWYGGTESAMFNRLEEIATSLQPV  736 (899)
Q Consensus       672 ~~~~~~~e---~~~~a~------e~GyV~~~~~~-~~~~~~~-----~v~tl~GRrr~~gGteS~~Fn~LE~iA~~~~Pr  736 (899)
                      +.|++..+   +++++.      +.|||++++.+ +++.+.+     .+ ++++||+|+|||||+|||+||+||.++.|+
T Consensus       926 ~~y~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~~s~~~~~-~~~~r~~w~GGtES~mFNkLE~iA~s~~P~ 1004 (1172)
T 3ikm_A          926 RWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKW-EVVAERAWKGGTESEMFNKLESIATSDIPR 1004 (1172)
T ss_dssp             SSSCSSSCHHHHHHHHHSSSSCCCCSSCCCCCCCHHHHSCSSSCHHHHT-TTTTTHHHHHHHHHHHHSCSSSSSCCSSSC
T ss_pred             hhhhhccccchhhhhccccccccccccchhhhhhhhhhccccccccccc-cccccceecCChhHHHHHHHHHHhccCCCC
Confidence            99976533   334433      68999987775 2333222     22 799999999999999999999999999999


Q ss_pred             ccccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHHHHhccCCc---eeEEEecceeEEecCcchHHHHH
Q psy15891        737 TPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCMRWLVSRDT---RFVISIHDEIRYLVPDEEKYETA  813 (899)
Q Consensus       737 tP~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m~~L~~~~~---rlvlsVHDEI~~eVpee~~~~aA  813 (899)
                      ||+|||+|++||++++ .++.|+|+|+||+||||||||+|++||+|+||++.|+   |+||||||||+|+|+++++||+|
T Consensus      1005 TP~LGc~It~AL~~~~-~~~~~~~sriNw~iQsSa~D~lhl~~v~m~~l~~~~~l~ar~~l~vHDEl~~~v~~~dkyRaA 1083 (1172)
T 3ikm_A         1005 TPVLGCCISRALEPSA-VQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAA 1083 (1172)
T ss_dssp             CCC----------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCBCCCCBTTEEEEEEESTTHHHHH
T ss_pred             CCcccchhhhhhCccc-cccchhhhhhchhccchHHHHHHHHHHHHHHHHHHhCCCceEEEEEcceEEEeccHHHHHHHH
Confidence            9999999999999998 7999999999999999999999999999999999886   99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCcccccccccccccccccccCCCccCCCCccCCCccccCCCCcccCHHHHHHhcCCC
Q psy15891        814 LALHVTNLLTRAFCIKKLDMTDIPLSISFFSGVEIDKVLRKESDNDCKTPSNPYGLCKGYGIPLGEILDIYQTIDKANGV  893 (899)
Q Consensus       814 ~aLqianl~tramf~~~lg~~dlP~svAffs~vdid~vlRKEv~~dc~TPSnp~~~~~~y~Ip~Gesldi~~~l~~~~g~  893 (899)
                      +||||+|||||||||+|+||+||||||||||+|||||||||||||||+|||||+||++||+|||||||||++||+||||+
T Consensus      1084 LALQIaNLwTRamFa~~lGi~DLPqsvAFFSaVDID~VLRKEVdmdCvTPSnp~gl~~~y~IP~GEsLdI~~lLekt~gs 1163 (1172)
T 3ikm_A         1084 LALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKGS 1163 (1172)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCCHHHHTCSCCEEESSCCSSGGGCCCCSSSSCSCSSSCSCCCCCBCCHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccccccccchhhhhhhccCCcccCCCCCCccccCCCCCCCceecHHHHHHhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q psy15891        894 IG  895 (899)
Q Consensus       894 l~  895 (899)
                      |.
T Consensus      1164 L~ 1165 (1172)
T 3ikm_A         1164 LE 1165 (1172)
T ss_dssp             CS
T ss_pred             cc
Confidence            86

PyMOL of 3ikm

>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...	Back alignment and structure

>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...	Back alignment and structure

>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*	Back alignment and structure

>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*	Back alignment and structure

>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*	Back alignment and structure

>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}	Back alignment and structure

>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		899
d1kfsa2		410	e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragm	1e-05

>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} Length = 410	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: DNA polymerase I (Klenow fragment)
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 53/300 (17%), Positives = 101/300 (33%), Gaps = 68/300 (22%)

Query: 550 GSELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYCAKEHGATPLGWMTLSGQKSNATD 609
           G  +R    AP+ Y I+ AD    EL I      ++ +++ G            ++ A +
Sbjct: 168 GRRIRQAFIAPEDYVIVSADYSQIELRIM-----AHLSRDKGLLTAFAEGKDIHRATAAE 222

Query: 610 MHSITAKAVGISRE-HAKIINYARIYGAGERFAERLLKQFNPEMSKSDAKSKARKMYTLT 668
           +  +  + V   +   AK IN+  IYG     A  L +Q N  + + +A+      +   
Sbjct: 223 VFGLPLETVTSEQRRSAKAINFGLIYGMS---AFGLARQLN--IPRKEAQKYMDLYFERY 277

Query: 669 KGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEE 728
            G                 V    E     +     V+ +  +  +    +S+   R   
Sbjct: 278 PG-----------------VLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGAR--- 317

Query: 729 IATSLQPVTPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHL-MLVCMRWLVS 787
                                      +   +  IN  +Q  A D +   M+    WL +
Sbjct: 318 --------------------------RAAAERAAINAPMQGTAADIIKRAMIAVDAWLQA 351

Query: 788 R--DTRFVISIHDEIRYLVPDEEKYETALALHVTNLLTRAFCIKKLDMTDIPLSISFFSG 845
                R ++ +HDE+ + V  ++    A+A  +  L+     +      D+PL +   SG
Sbjct: 352 EQPRVRMIMQVHDELVFEVHKDD--VDAVAKQIHQLMENCTRL------DVPLLVEVGSG 403

PyMOL of d1kfsa2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		899
d2hhva2		408	DNA polymerase I (Klenow fragment) {Bacillus stear	100.0
d1kfsa2		410	DNA polymerase I (Klenow fragment) {Escherichia co	100.0
d1qtma2		409	DNA polymerase I (Klenow fragment) {Thermus aquati	100.0
d1x9ma2		494	T7 phage DNA polymerase {Bacteriophage T7 [TaxId:	100.0
d1kfsa1		195	Exonuclease domain of prokaryotic DNA polymerase {	90.98
d1x9ma1		204	Exonuclease domain of T7 DNA polymerase {Bacteriop	90.72
d1yt3a3		193	Ribonuclease D, catalytic domain {Escherichia coli	89.56
d1tgoa1		347	Exonuclease domain of family B DNA polymerases {Ar	87.29
d2hhva1		171	Exonuclease domain of prokaryotic DNA polymerase {	83.68

>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: DNA polymerase I (Klenow fragment)
species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

Probab=100.00  E-value=2.3e-45  Score=404.04  Aligned_cols=249  Identities=19%  Similarity=0.296  Sum_probs=210.2

Q ss_pred             CCCCeEeeeeeeccccccccccCccceecCCCCCcccc-------cccceEecCCCceEEEEeccchhhhhhhhcccccc
Q psy15891        514 RDYGVILPQLIVSGTLTRRAVEATWMTASNAVGERVGS-------ELRAMIQAPDGYSIIGADVDSQELWIASVIGDSYC  586 (899)
Q Consensus       514 ~~dGrIhp~~~~~GTvTGRa~e~tWLSaSnP~~~~~Gs-------elRs~f~AppGy~~VgAD~SqiELRIlal~gDA~~  586 (899)
                      ..+|||||.|+++||+|||      +|+++||.+++++       ..|.+|.++|||+||++||||||+||+     ||+
T Consensus       129 ~~~gRih~~~~~~gt~TGR------~s~~~Pnlqn~p~~~~~~~~~~r~~~~~~~g~~lv~~DysqiElRvl-----A~l  197 (408)
T d2hhva2         129 PDTKKVHTIFNQALTQTGR------LSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVL-----AHI  197 (408)
T ss_dssp             TTTCEECCEEESSCCSSSC------CEEESSCTTCCCCSSHHHHGGGGGEECSSTTEEEEEEEESSHHHHHH-----HHH
T ss_pred             CCCCeECCeeeccCccccc------cccCccccccCCCcccccchhhhhheeecCCceEEEeccccchHHHH-----HHH
Confidence            4579999999999999999      9999999877663       457788888999999999999999999     999


Q ss_pred             cc-cccccccccccccCccCCCCchhHHHHHHh-cc--------chhhhhHHHHHHhhcccHHHHHHHHHHhCCCCCHHH
Q psy15891        587 AK-EHGATPLGWMTLSGQKSNATDMHSITAKAV-GI--------SREHAKIINYARIYGAGERFAERLLKQFNPEMSKSD  656 (899)
Q Consensus       587 s~-~~g~~Afg~m~LeG~K~~GtDlHs~tAs~l-Gi--------sR~~AKv~nyG~iYGaG~k~A~~La~q~n~~lS~eE  656 (899)
                      ++ ..++++|         .+|.|+|+.+|+.+ ++        .|+.||++|||++||+|   +.+|+.++|  +|.+|
T Consensus       198 s~D~~l~~~~---------~~g~D~h~~~a~~~~~~~~~~~~~~~R~~aK~~~fg~~YG~g---~~~l~~~~~--~~~~e  263 (408)
T d2hhva2         198 AEDDNLMEAF---------RRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGIS---DYGLAQNLN--ISRKE  263 (408)
T ss_dssp             HTCHHHHHHH---------HTTCCHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHHCCC---HHHHHHHHT--CCHHH
T ss_pred             hCCHHHHHHH---------HhhhhhhhhhhhhhcCCCHHHcCchHHHHHHHHhhchhhccc---ccccccccc--ccHHH
Confidence            98 8899999         78999999999987 33        39999999999999999   999999998  99999


Q ss_pred             HHHHHHHHHHhChhhHHHHhhhhHHHHHHhcCeeecchhhhhcccCCcccccCCCccccCCCchhhhhhhHHHhhccCCC
Q psy15891        657 AKSKARKMYTLTKGKKLYRLKDGHLEELIKRVYSKYEAREVCSAYNTSVDKIFDKPQWYGGTESAMFNRLEEIATSLQPV  736 (899)
Q Consensus       657 A~~~~~~f~~~~pgv~~~~~~~e~~~~a~e~GyV~~~~~~~~~~~~~~v~tl~GRrr~~gGteS~~Fn~LE~iA~~~~Pr  736 (899)
                      |++++++|++.||++..|+..  +..++.+.||+.               +++||||+                      
T Consensus       264 a~~~~~~~~~~~p~i~~~~~~--~~~~a~~~g~~~---------------~~~grrr~----------------------  304 (408)
T d2hhva2         264 AAEFIERYFESFPGVKRYMEN--IVQEAKQKGYVT---------------TLLHRRRY----------------------  304 (408)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH--HHHHHHHHSEEE---------------CTTCCEEE----------------------
T ss_pred             HHHHHHHHHhhccchhhhHHH--HHHHHHHhCCCc---------------ccCCCeec----------------------
Confidence            999999999999999999977  889999999997               89999998                      


Q ss_pred             ccccccccccccCCCccccchhhhhhhhhhhchHHHHHHHHHHHHH-HHhccC--CceeEEEecceeEEecCcchHHHHH
Q psy15891        737 TPFLNCRLSRALEPVSEDDSKFIQTRINWVVQSGAVDFLHLMLVCM-RWLVSR--DTRFVISIHDEIRYLVPDEEKYETA  813 (899)
Q Consensus       737 tP~Lg~~i~~aL~~~~~~~~~~~rsavN~vIQGSAADilklamv~m-~~L~~~--~~rlvlsVHDEI~~eVpee~~~~aA  813 (899)
                      +|...++..       ..++...|+++|++|||||||++|.+|+.+ +++...  ..+++++|||||+++||++++.+++
T Consensus       305 ~p~~~~~~~-------~~r~~~~r~a~N~~iQgsaAdi~k~a~~~~~~~l~~~~~~~~lv~~VHDEiv~ev~~~~~~~~~  377 (408)
T d2hhva2         305 LPDITSRNF-------NVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLC  377 (408)
T ss_dssp             CGGGGCSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEECSSEEEEEEEGGGHHHHH
T ss_pred             CCccccccH-------hHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeeeeeEEEECHHHHHHHH
Confidence            343322221       135667899999999999999999999999 455432  2489999999999999999999877


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCcccc
Q psy15891        814 LALHVTNLLTRAFCIKKLDMTDIPLSIS  841 (899)
Q Consensus       814 ~aLqianl~tramf~~~lg~~dlP~svA  841 (899)
                      ..++  .+|+.+     +.+ +||+.|.
T Consensus       378 ~~~~--~~M~~~-----~~l-~vPl~~d  397 (408)
T d2hhva2         378 RLVP--EVMEQA-----VTL-RVPLKVD  397 (408)
T ss_dssp             HHHH--HHHHTS-----SCC-SSCCCEE
T ss_pred             HHHH--HHHhcC-----cCC-CCeEEee
Confidence            5543  333333     233 5777653

PyMOL of d2hhva2

>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}	Back information, alignment and structure

>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}	Back information, alignment and structure