Psyllid ID: psy15912

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
Protein Sequence
MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISSTL
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccEEEcccccEEEccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHcccEEEEEccccEEEEEEEHHHHHHHHHHHHccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccEccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHEEHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccEEEHHHccccEEEEccccEHHHHHHHHHcccccccEEEcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHHccccHcccccEEEccccccccccEEcccccHHHHHHHHHHHcccEEEEEcccccEEEEEEHHHHHHHHHHHccccccccHHHHHccc
Coil and Loop (DISEMBL)
MKHAVQMYCGDGEYNTLAALWLQVPEKsvrtmlhdpkgafgvFSLSVFVVTYFLLSVWTYGvsvsgggmpekydflskdnvwksngkprslseqlsdsggvfipcLLTGAAWGRLFSLFLQsifpeatwidpgkyALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQlsgipllawdppplssnitarivkshpviclrpletVGNIIDVLKatshngfpivdvepmtkhssdgaeqssagstdshkgdtshkrdsshkgdasrkespgrlVGLILRSQLIILIKHKIykenqnwpddqlsseifhaeyrcrpriwspgrlvGLILRSQLIILIKHKIykenqnwpddqlsseifhaeyprypsvndlvvsendRSFTVKLNLFmntspfsvqdstslPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRvwrhggrmgleelkisstl
Flexible Loop (DISEMBL)
MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGaeqssagstdshkgdtshkrdsshkgdasrkespgrlvGLILRSQLIILIKHKIYkenqnwpddqLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTspfsvqdstslPRVFKLFRALGLRHvvvvnnnnhvvgmitrkdlaryRVWRhggrmgleelkisstl
Low Complexity Region (SEG)
MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRhvvvvnnnnhvvGMITRKDLARYRVWRHGGRMGLEELKISSTL
Disordered region (IsUnstruct)
****VQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVW****************GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV**********************************************LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMG**********
Disordered Region (DISOPRED)
*KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHK**************************LILRSQLIILIKHKIYKENQNWPDDQLSSEI********************ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKI****
Disordered Region (DISEMBL)
MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPM****************************************PGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISSTL
Disordered Region (DISPRO)
*KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK**********RLVGLILRSQLIILIKHKIYK*********************R**IWSPGRL***************************QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISSTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	482	2.2.26 [Sep-21-2011]
P51798	805	H(+)/Cl(-) exchange trans	yes	N/A	0.742	0.444	0.424	1e-101
O70496	803	H(+)/Cl(-) exchange trans	yes	N/A	0.742	0.445	0.424	1e-101
P51799	803	H(+)/Cl(-) exchange trans	yes	N/A	0.742	0.445	0.422	1e-101
Q4PKH3	809	H(+)/Cl(-) exchange trans	yes	N/A	0.742	0.442	0.416	7e-98
P51797	869	Chloride transport protei	no	N/A	0.858	0.476	0.338	1e-64
Q9TT16	869	Chloride transport protei	yes	N/A	0.858	0.476	0.329	5e-64
O35454	870	Chloride transport protei	no	N/A	0.858	0.475	0.327	1e-62
Q54AX6	863	Chloride channel protein	yes	N/A	0.771	0.431	0.272	1e-42
Q86AZ6	815	Chloride channel protein	no	N/A	0.784	0.463	0.295	7e-41
P92943	792	Chloride channel protein	yes	N/A	0.703	0.428	0.266	3e-38

>sp|P51798|CLCN7_HUMAN H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens GN=CLCN7 PE=1 SV=2

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/483 (42%), Positives = 272/483 (56%), Gaps = 125/483 (25%)

Query: 1   MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTY 60
           M + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L +F + YF L+ WTY
Sbjct: 446 MSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPLTLGLFTLVYFFLACWTY 505

Query: 61  GVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFL 120
           G++VS G                                 VFIP LL GAAWGRLF + L
Sbjct: 506 GLTVSAG---------------------------------VFIPSLLIGAAWGRLFGISL 532

Query: 121 QSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW 180
             +   A W DPGKYAL+GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK 
Sbjct: 533 SYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKI 592

Query: 181 IGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK 240
           +GD F EGLYD+HIQL  +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL 
Sbjct: 593 VGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLS 652

Query: 241 --ATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGR 298
             A++HNGFP+V+                      H  DT                 P R
Sbjct: 653 DTASNHNGFPVVE----------------------HADDTQ----------------PAR 674

Query: 299 LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQL 358
           L GLILRSQLI+L+KHK++ E  N                           +GL+ R   
Sbjct: 675 LQGLILRSQLIVLLKHKVFVERSN---------------------------LGLVQR--- 704

Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
                             +L  + F   YPR+P +  + VS+++R  T+ L+ FMN SP+
Sbjct: 705 ------------------RLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPY 746

Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKI 478
           +V    SLPRVFKLFRALGLRH+VVV+N N VVG++TRKDLARYR+    G+ GLEEL +
Sbjct: 747 TVPQEASLPRVFKLFRALGLRHLVVVDNRNQVVGLVTRKDLARYRL----GKRGLEELSL 802

Query: 479 SST 481
           + T
Sbjct: 803 AQT 805

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.
Homo sapiens (taxid: 9606)

>sp|O70496|CLCN7_MOUSE H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/483 (42%), Positives = 273/483 (56%), Gaps = 125/483 (25%)

Query: 1   MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTY 60
           M + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L +F + YF L+ WTY
Sbjct: 444 MSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTLGLFTLVYFFLACWTY 503

Query: 61  GVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFL 120
           G++VS G                                 VFIP LL GAAWGRLF + L
Sbjct: 504 GLTVSAG---------------------------------VFIPSLLIGAAWGRLFGISL 530

Query: 121 QSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW 180
             +   A W DPGKYAL+GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK 
Sbjct: 531 SYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKI 590

Query: 181 IGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK 240
           +GD F EGLYD+HIQL  +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL 
Sbjct: 591 VGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGIIVDVLS 650

Query: 241 --ATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGR 298
             A++HNGFP+V+                        GDT                 P R
Sbjct: 651 DTASNHNGFPVVE----------------------DVGDT----------------QPAR 672

Query: 299 LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQL 358
           L GLILRSQLI+L+KHK++ E  N                           +GL+ R   
Sbjct: 673 LQGLILRSQLIVLLKHKVFVERSN---------------------------MGLVQR--- 702

Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
                             +L  + F   YPR+P +  + VS+++R  T+ L+ FMN SP+
Sbjct: 703 ------------------RLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPY 744

Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKI 478
           +V    SLPRVFKLFRALGLRH+VVV+N+N VVG++TRKDLARYR+    G+ GLEEL +
Sbjct: 745 TVPQEASLPRVFKLFRALGLRHLVVVDNHNQVVGLVTRKDLARYRL----GKGGLEELSL 800

Query: 479 SST 481
           + T
Sbjct: 801 AQT 803

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Mus musculus (taxid: 10090)

>sp|P51799|CLCN7_RAT H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/483 (42%), Positives = 273/483 (56%), Gaps = 125/483 (25%)

Query: 1   MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTY 60
           M + +Q++C DGEYN++AA +   PEKSV ++ HDP G++   +L +F + YF L+ WTY
Sbjct: 444 MSYPLQLFCADGEYNSMAAAFFNTPEKSVVSLFHDPPGSYNPMTLGLFTLVYFFLACWTY 503

Query: 61  GVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFL 120
           G++VS G                                 VFIP LL GAAWGRLF + +
Sbjct: 504 GLTVSAG---------------------------------VFIPSLLIGAAWGRLFGISM 530

Query: 121 QSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW 180
             +   A W DPGKYAL+GAAAQLGG+VRMT+SLT+I++EAT N+++G P+ML L+TAK 
Sbjct: 531 SYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSNVTYGFPIMLVLMTAKI 590

Query: 181 IGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK 240
           +GD F EGLYD+HIQL  +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL 
Sbjct: 591 VGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGIIVDVLS 650

Query: 241 --ATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGR 298
             A++HNGFP+V+                        GDT                 P R
Sbjct: 651 DTASNHNGFPVVE----------------------DVGDT----------------QPAR 672

Query: 299 LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQL 358
           L GLILRSQLI+L+KHK++ E  N                           +GL+ R   
Sbjct: 673 LQGLILRSQLIVLLKHKVFVERSN---------------------------MGLVQR--- 702

Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
                             +L  + F   YPR+P +  + VS+++R  T+ L+ FMN SP+
Sbjct: 703 ------------------RLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPY 744

Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKI 478
           +V    SLPRVFKLFRALGLRH+VVV+N+N VVG++TRKDLARYR+    G+ GLEEL +
Sbjct: 745 TVPQEASLPRVFKLFRALGLRHLVVVDNHNQVVGLVTRKDLARYRL----GKGGLEELSL 800

Query: 479 SST 481
           + T
Sbjct: 801 AQT 803

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Rattus norvegicus (taxid: 10116)

>sp|Q4PKH3|CLCN7_BOVIN H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1

 Score =  358 bits (918), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 201/483 (41%), Positives = 271/483 (56%), Gaps = 125/483 (25%)

Query: 1   MKHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTY 60
           + + +Q++C DGEYN++A  +   PEKSV ++ HDP G++   +L +F + YF L+ WTY
Sbjct: 450 VSYPLQLFCADGEYNSMAVAFFNTPEKSVVSLFHDPPGSYNPMTLGLFTLVYFFLACWTY 509

Query: 61  GVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFL 120
           G++VS G                                 VFIP LL GAAWGRLF + L
Sbjct: 510 GLTVSAG---------------------------------VFIPSLLIGAAWGRLFGISL 536

Query: 121 QSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW 180
             I   A W DPGKYAL+GAAAQLGG+VRMT+SLT+I++EAT ++++G P+ML L+TAK 
Sbjct: 537 SYITGAAVWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEATSSVTYGFPIMLVLMTAKI 596

Query: 181 IGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLK 240
           +GD F EGLYD+HIQL  +P L W+ P  S ++TAR V S PV CLR  E VG I+DVL 
Sbjct: 597 VGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSTPVTCLRRREKVGVIVDVLS 656

Query: 241 ATS--HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGR 298
           +T+  HNGFP+V+        +DG +                               P R
Sbjct: 657 STASNHNGFPVVE-------DADGTQ-------------------------------PAR 678

Query: 299 LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQL 358
           L GLILRSQLI+L+KHK++ E                                   RS +
Sbjct: 679 LQGLILRSQLIVLLKHKVFVE-----------------------------------RSSM 703

Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
            +L +    K+             F   YPR+P +  + VS+++R  T+ L+ FMN SP+
Sbjct: 704 GLLRRRLRLKD-------------FRDAYPRFPPIQSIHVSQDERECTMDLSEFMNPSPY 750

Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKI 478
           +V    SLPRVFKLFRALGLRH+VVV+N N VVG++TRKDLARYR+    G+ GLEEL +
Sbjct: 751 TVPQEASLPRVFKLFRALGLRHLVVVDNCNQVVGLVTRKDLARYRL----GKGGLEELSL 806

Query: 479 SST 481
           + T
Sbjct: 807 AQT 809

Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.

Bos taurus (taxid: 9913)

>sp|P51797|CLCN6_HUMAN Chloride transport protein 6 OS=Homo sapiens GN=CLCN6 PE=1 SV=2

 Score =  247 bits (631), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 237/467 (50%), Gaps = 53/467 (11%)

Query: 7   MYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSG 66
            +C +  YN +A L+    E ++  + H   G F   +L++F V YFLL+ WTYG+SV  
Sbjct: 428 FFCPNDTYNDMATLFFNPQESAILQLFHQ-DGTFSPVTLALFFVLYFLLACWTYGISVPS 486

Query: 67  GGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPE 126
           G                                 +F+P LL GAA+GRL +  L+S +  
Sbjct: 487 G---------------------------------LFVPSLLCGAAFGRLVANVLKS-YIG 512

Query: 127 ATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT 186
              I  G +ALIGAAA LGGVVRMTISLT+ILIE+T  I++GLP+M+TL+ AKW GDFF 
Sbjct: 513 LGHIYSGTFALIGAAAFLGGVVRMTISLTVILIESTNEITYGLPIMVTLMVAKWTGDFFN 572

Query: 187 EGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNG 246
           +G+YDIH+ L G+PLL W+       + A  +    +  + P   + +++ +L+ T H+ 
Sbjct: 573 KGIYDIHVGLRGVPLLEWETEVEMDKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHA 632

Query: 247 FPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLIL-- 304
           FP+V      +       Q  + +    K     +     K   S K  P   +  +   
Sbjct: 633 FPVVTENRGNEKEFMKGNQLISNNIKFKKSSILTRAGEQRKRSQSMKSYPSSELRNMCDE 692

Query: 305 ---------RSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILR 355
                    +  L+  +  + Y    N   DQ  SE +  E R RP  +      GLILR
Sbjct: 693 HIASEEPAEKEDLLQQMLERRYTPYPNLYPDQSPSEDWTMEERFRPLTFH-----GLILR 747

Query: 356 SQLI-ILIKHKIYKENQNWPDD-QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFM 413
           SQL+ +L++   Y E+Q+     +LS      +YPRYP ++DL ++  +    V +  +M
Sbjct: 748 SQLVTLLVRGVCYSESQSSASQPRLSYAEMAEDYPRYPDIHDLDLTLLNPRMIVDVTPYM 807

Query: 414 NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
           N SPF+V  +T + +VF LFR +GLRH+ VVN    +VG+ITR +L 
Sbjct: 808 NPSPFTVSPNTHVSQVFNLFRTMGLRHLPVVNAVGEIVGIITRHNLT 854

Chloride transport protein, initially identified as voltage-gated chloride channel. The presence of the conserved gating glutamate residues suggests that is functions as antiporter.

Homo sapiens (taxid: 9606)

>sp|Q9TT16|CLCN6_RABIT Chloride transport protein 6 OS=Oryctolagus cuniculus GN=CLCN6 PE=2 SV=1

 Score =  245 bits (626), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 238/467 (50%), Gaps = 53/467 (11%)

Query: 7   MYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSG 66
            +C +  YN +A L+    E ++  + H   G F   +L++F V YFLL+ WTYG+SV  
Sbjct: 428 FFCPNDTYNDMATLFFNPQESAILQLFHQ-DGTFSPITLALFFVLYFLLACWTYGISVPS 486

Query: 67  GGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPE 126
           G                                 +F+P LL GAA+GRL +  L+S +  
Sbjct: 487 G---------------------------------LFVPSLLCGAAFGRLVANVLKS-YIG 512

Query: 127 ATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT 186
            + I  G ++LIGAAA LGGVVRMTISLT+ILIE+T  I++GLP+M+TL+ AKW GDFF 
Sbjct: 513 LSHIYSGTFSLIGAAALLGGVVRMTISLTVILIESTNEITYGLPIMITLMVAKWTGDFFN 572

Query: 187 EGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNG 246
           +G+YDIH+ L G+PLL W+       + A  +    +  + P   + +++ +L+ T H+ 
Sbjct: 573 KGIYDIHVGLRGVPLLEWETEVEMDKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHA 632

Query: 247 FPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLIL-- 304
           FP+V      +       Q  + +    K     +     +   S K  P   +  +   
Sbjct: 633 FPVVTENRGNEKEFMKGNQLISNNIKFKKSSILTRAGEQRRRSQSMKSYPSSELRNVCDE 692

Query: 305 ---------RSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILR 355
                    +  L+  +  + Y    N   DQ  SE +  E R RP  +      GLILR
Sbjct: 693 HVASEEPAEKEDLLQQMLERRYTPYPNLYPDQSPSEDWTMEERFRPLTFH-----GLILR 747

Query: 356 SQLI-ILIKHKIYKENQNWPDD-QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFM 413
           SQL+ +L++   Y E+Q+     +LS      +YPR+P ++DL ++  +    V +  +M
Sbjct: 748 SQLVTLLVRGVCYSESQSSASQPRLSYAEMAEDYPRFPDIHDLDLTLLNPRMIVDVTPYM 807

Query: 414 NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
           N SPF+V  +T + +VF LFR +GLRH+ VVN    +VG++TR +L 
Sbjct: 808 NPSPFTVSPNTHVSQVFNLFRTMGLRHLPVVNAVGEIVGIVTRHNLT 854

Chloride transport protein, initially identified as voltage-gated chloride channel. The presence of the conserved gating glutamate residues suggests that is functions as antiporter.

Oryctolagus cuniculus (taxid: 9986)

>sp|O35454|CLCN6_MOUSE Chloride transport protein 6 OS=Mus musculus GN=Clcn6 PE=1 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/467 (32%), Positives = 235/467 (50%), Gaps = 53/467 (11%)

Query: 7   MYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSG 66
            +C +  YN +A L+    E ++  + H   G F   +L++F + YFLL+ WT+G SV  
Sbjct: 429 FFCPNDTYNDMATLFFNSQESAILQLFHQ-DGTFSPVTLALFFILYFLLACWTFGTSVPS 487

Query: 67  GGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPE 126
           G                                 +F+P LL GAA+GRL +  L+S +  
Sbjct: 488 G---------------------------------LFVPSLLCGAAFGRLVANVLKS-YIG 513

Query: 127 ATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT 186
              +  G +ALIGAAA LGGVVRMTISLT+ILIE+T  I++GLP+M+TL+ AKW GD F 
Sbjct: 514 LGHLYSGTFALIGAAAFLGGVVRMTISLTVILIESTNEITYGLPIMVTLMVAKWTGDLFN 573

Query: 187 EGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNG 246
           +G+YD+HI L G+PLL W+       + A  +    +  + P   + +++ +L+ T H+ 
Sbjct: 574 KGIYDVHIGLRGVPLLEWETDVEMDKLRASDIMEPNLTYVYPHTRIQSLVSILRTTVHHA 633

Query: 247 FPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLIL-- 304
           FP+V      +       Q  + +    K     +     K   S K  P   +  +   
Sbjct: 634 FPVVTENRGNEKEFMKGNQLISNNIKFKKSSILTRAGEQRKRGQSMKSYPSSELRNVCDE 693

Query: 305 ---------RSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILR 355
                    +  L+  +  + Y    N   DQ  SE +  E R RP  +      GL+LR
Sbjct: 694 HVASEEPAEKEDLLQQMLERRYTPYPNLYPDQSPSEDWTMEERFRPLTFH-----GLVLR 748

Query: 356 SQLI-ILIKHKIYKENQNWPDD-QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFM 413
           SQL+ +L++   Y E+Q+     +LS      +YPRYP ++DL ++  +    V +  +M
Sbjct: 749 SQLVTLLVRGVCYSESQSSASQPRLSYAEMAEDYPRYPDIHDLDLTLLNPRMIVDVTPYM 808

Query: 414 NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
           N SPF+V  +T + +VF LFR +GLRH+ VVN    +VG+ITR +L 
Sbjct: 809 NPSPFTVSPNTHVSQVFNLFRTMGLRHLPVVNAVGEIVGIITRHNLT 855

Chloride transport protein, initially identified as voltage-gated chloride channel. The presence of the conserved gating glutamate residues suggests that is functions as antiporter.

Mus musculus (taxid: 10090)

>sp|Q54AX6|CLCA_DICDI Chloride channel protein A OS=Dictyostelium discoideum GN=clcA PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 211/462 (45%), Gaps = 90/462 (19%)

Query: 5   VQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSV 64
           +  +C  GEYN +A L     + ++R +       F + +L+VF +  F+L+  T G+ +
Sbjct: 484 IAFFCEQGEYNQMAGLSFNSLDAALRLLFSTSTDIFTIPTLAVFSLISFILTTITSGLML 543

Query: 65  SGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIF 124
           + G                                 +FIP +L GA +GRL    +  + 
Sbjct: 544 ASG---------------------------------LFIPMMLVGATFGRL----VGQVI 566

Query: 125 PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 184
                +DP  YAL+GA+A + G  RMTISL II++E T    + LP++L+++ AKW+GDF
Sbjct: 567 ALFVSVDPCIYALVGASAMMAGFSRMTISLAIIMVELTEGTQYMLPVILSVMIAKWVGDF 626

Query: 185 FTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATS- 243
           F E +Y+  I+    P L   PP     +    +    V+ L  +E V  +I+VLK+   
Sbjct: 627 FNESIYEHLIEQKCYPFLQSQPPKSMIKLGVVDIMKTEVVTLHEVERVSKVIEVLKSEQH 686

Query: 244 -HNGFPIVDV-EPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            HNGFP+++   P+     D   + + G+ + ++ +T++                    G
Sbjct: 687 FHNGFPVIERPRPL-----DPNRKDAYGNLEYYEDETTYS-------------------G 722

Query: 302 LILRSQLIILIKHKIYKENQNWPDD-QLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLII 360
           LILR+QLI L+ ++I+   Q  P + +L     +  Y  R R   P              
Sbjct: 723 LILRNQLICLLYYRIFCHEQPLPQNPRLLGGNSNRRYNQR-RFGRP-------------- 767

Query: 361 LIKHKIYKENQNWPDD-QLSSEIFHAEYPR-YPSVNDL-VVSENDRSFTVKLNLFMNTSP 417
                   E    P D +++ E+      R +P ++ + +  E   +  + L  +MN S 
Sbjct: 768 -------TEYGYAPADPRMTYELMTQSLARHFPPIDKMNLKKEEIETMYIDLRPYMNLST 820

Query: 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
               ++ S    + +FR +GLRH+ VVN  N VVG++TRKDL
Sbjct: 821 IVANETYSYSETYSIFRTIGLRHLPVVNKKNEVVGIVTRKDL 862

Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction.

Dictyostelium discoideum (taxid: 44689)

>sp|Q86AZ6|CLCB_DICDI Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1

 Score =  168 bits (426), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 221/463 (47%), Gaps = 85/463 (18%)

Query: 6   QMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVS 65
           Q  C +G YN +A L L   E S++ +       F   +L  F + Y++L++ T G+ V+
Sbjct: 430 QFNCAEGYYNPMATLTLTTLENSLQIVFSRSTNIFTAQTLLTFSIFYYVLTIITSGLYVA 489

Query: 66  GGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFP 125
            G                                 +FIP +L G++WGRL  +FL   F 
Sbjct: 490 SG---------------------------------IFIPMMLIGSSWGRLIGIFLSKYF- 515

Query: 126 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF 185
             T IDP  YALIGAA+ + G +RMTISL +I++E T    + LP++L+++  KW GD F
Sbjct: 516 --TSIDPSIYALIGAASMMAGSLRMTISLVVIIVELTETTQYLLPVILSVMVGKWCGDIF 573

Query: 186 TEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHN 245
            E +Y+  I+L  IP L   PP      T     S  V  L  +  V   + +L+   HN
Sbjct: 574 NESIYEHLIELKHIPYLNSQPPNHLRKKTVAEAMSTDVKTLPEIVKVKTALTILETCPHN 633

Query: 246 GFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGR------L 299
           GFP+V +  +  HS+     S+  S   +  + ++  ++++  + +   +         L
Sbjct: 634 GFPVVMLPQL--HSNSNLNDSNQLSLSLNLNNNNNNNNNNNNNNNNNNNNNNNNNNNNIL 691

Query: 300 VGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLI 359
            GLILRSQL +L++ KI+    N P+D                           L++  I
Sbjct: 692 CGLILRSQLSVLLRRKIF----NSPED---------------------------LKN--I 718

Query: 360 ILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDL--VVSENDRSFTVKLNLFMNTSP 417
             I  K Y    N P D   +E       + P +++L  ++++ D    + L  +MN + 
Sbjct: 719 DFISDKGY----NLPIDH--TEFSQELASKIPPIHELSKLITKEDLDMYIDLRPYMNFAV 772

Query: 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
            S+++ +SL   +++FR +GLRH+VV+N  N+VVGM+TRKDL 
Sbjct: 773 VSIKNYSSLSEAYQIFRQVGLRHMVVINVFNNVVGMLTRKDLC 815

Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction.

Dictyostelium discoideum (taxid: 44689)

>sp|P92943|CLCD_ARATH Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2

 Score =  160 bits (404), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 199/458 (43%), Gaps = 119/458 (25%)

Query: 5   VQMYCG-DGEYNTLAALWLQVPEKSVRTMLH-DPKGAFGVFSLSVFVVTYFLLSVWTYGV 62
           V  +C  D EYN LA ++    + ++R +        F   SL  F+  ++ L+V T+G 
Sbjct: 409 VNFFCKTDNEYNDLATIFFNTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGT 468

Query: 63  SVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQS 122
           +V  G                                  F+P ++ G+ +GRL  +F+  
Sbjct: 469 AVPAGQ---------------------------------FVPGIMIGSTYGRLVGMFVVR 495

Query: 123 IFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIG 182
            + +   I+ G YAL+GAA+ LGG +RMT+SL +I++E T N+     +ML L+ +K +G
Sbjct: 496 FYKKLN-IEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVG 554

Query: 183 DFFTEGLYDIHIQLSGIPLLAWDPP-PLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           D F EGLY++  +L GIPLL   P   +   I     +S  VI L  +  V ++  +L +
Sbjct: 555 DAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEACQSQKVISLPRVIRVADVASILGS 614

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
             HNGFP++D                     +  G+T                    ++G
Sbjct: 615 NKHNGFPVID--------------------HTRSGET-------------------LVIG 635

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           L+LRS L++L++ K+  ++   P D  +  I H+       + S G              
Sbjct: 636 LVLRSHLLVLLQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGL------------- 682

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                          + D+ ++ +D    + L  F+N SP+ V 
Sbjct: 683 ------------------------------CIEDIHLTSDDLEMYIDLAPFLNPSPYVVP 712

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
           +  SL +V+ LFR LGLRH+ VV   + V+G+ITRKDL
Sbjct: 713 EDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDL 750

Voltage-gated chloride channel.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
328709438	759	PREDICTED: H(+)/Cl(-) exchange transport	0.755	0.479	0.459	1e-113
328785199	807	PREDICTED: H(+)/Cl(-) exchange transport	0.757	0.452	0.438	1e-108
380021098	805	PREDICTED: H(+)/Cl(-) exchange transport	0.757	0.453	0.438	1e-108
307201523	805	Chloride channel protein 7 [Harpegnathos	0.757	0.453	0.436	1e-108
322796366	775	hypothetical protein SINV_06598 [Solenop	0.757	0.470	0.440	1e-107
340725063	803	PREDICTED: H(+)/Cl(-) exchange transport	0.757	0.454	0.424	1e-107
350398489	802	PREDICTED: H(+)/Cl(-) exchange transport	0.757	0.455	0.426	1e-107
345486889	824	PREDICTED: H(+)/Cl(-) exchange transport	0.748	0.438	0.429	1e-106
383865255	806	PREDICTED: H(+)/Cl(-) exchange transport	0.757	0.452	0.430	1e-106
383865253	809	PREDICTED: H(+)/Cl(-) exchange transport	0.757	0.451	0.430	1e-106

>gi|328709438|ref|XP_001952257.2| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Acyrthosiphon pisum]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/481 (45%), Positives = 288/481 (59%), Gaps = 117/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K+ VQ+ C DGEYN++A+LWLQVPE SVR+  HDP  +    +L  F ++++LL+ WTYG
Sbjct: 396 KNPVQLNCNDGEYNSMASLWLQVPEASVRSFFHDPTESLDATTLVYFAISFYLLTTWTYG 455

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
           +SVS G                                 +FIPCL TGAAWGRL  L +Q
Sbjct: 456 LSVSAG---------------------------------LFIPCLATGAAWGRLIGLGVQ 482

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            +FP    ID GKYAL+GAA+QLGG VRMTISLT+ILIEATG+I+FGLPLM+ L+TAKWI
Sbjct: 483 CVFPN---IDVGKYALVGAASQLGGAVRMTISLTVILIEATGDITFGLPLMICLLTAKWI 539

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GD+FTE +YD+HIQLSGIPL+AWDPPPLSSNI A  V SHPV   +  E+VG I+D LK 
Sbjct: 540 GDYFTESIYDVHIQLSGIPLMAWDPPPLSSNIYASEVMSHPVTVFKSKESVGQIVDTLKK 599

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            ++NGFP+VD                  ST++  G+                +S GRL G
Sbjct: 600 YTYNGFPVVD---------------DVFSTETEGGN---------------NKSNGRLRG 629

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++K++ E                     P  W                 
Sbjct: 630 LILRSQLIVLLQNKVFNE--------------------IPSAW----------------- 652

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                         D +S   F  +YPRY +++++ V +N+R +TV L  FMN SP+ VQ
Sbjct: 653 --------------DNVSLTTFRKDYPRYSNIDNIEVLDNERQYTVDLLRFMNPSPYVVQ 698

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
              SLPR+F+LFRA+GLRH+VVVN++N V G++TRKDL RYRVWRH G +G+EELK+S+ 
Sbjct: 699 HMASLPRIFRLFRAMGLRHIVVVNDSNEVTGVVTRKDLTRYRVWRHRGAIGVEELKVSAK 758

Query: 482 L 482
           L
Sbjct: 759 L 759

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785199|ref|XP_396520.3| PREDICTED: H(+)/Cl(-) exchange transporter 7 [Apis mellifera]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/481 (43%), Positives = 284/481 (59%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K  +QMYC DGEY+ +AALW Q PE SVR++ HDPKG+    +L++FVV YFLL+V T+G
Sbjct: 443 KFPIQMYCNDGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITLAIFVVLYFLLAVATFG 502

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
           +S+S G                                 +FIP LL GAAWGRL    L 
Sbjct: 503 LSMSSG---------------------------------LFIPSLLIGAAWGRLIGSGLS 529

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            +FP    ++PGKYAL+GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+
Sbjct: 530 RLFPNCVVLNPGKYALLGAAAQLGGVVRMTISLTAILIEATQGISFGLPLIIVLIMAKWV 589

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIH Q++GIP+L W+ PPLS+NI A  + SHP++ L+ +E VG+II++LK 
Sbjct: 590 GDFFNEGIYDIHTQMAGIPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIIELLKC 649

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD       SSD  E  S                             GR  G
Sbjct: 650 VTFNGFPVVD-----PPSSDEIEIHSY----------------------------GRFRG 676

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++KI+ +N ++ D  LS +IF  EY                        
Sbjct: 677 LILRSQLIVLLQNKIFNKNLDYWDRSLSIKIFRKEY------------------------ 712

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP+++ + V++ ++++T+ L  FMN SP++VQ
Sbjct: 713 --------------------------PRYPTIDQVTVTDEEKTYTIDLRPFMNPSPYTVQ 746

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRH+ V+N+ N V+G+ITRKD+AR+R+W+H G MGL+EL I+  
Sbjct: 747 HSATLPRTFRLFRALGLRHLPVINDTNEVIGIITRKDVARFRIWKHRGNMGLDELLITDK 806

Query: 482 L 482
           +
Sbjct: 807 I 807

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021098|ref|XP_003694411.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Apis florea]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/481 (43%), Positives = 283/481 (58%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K  +QMYC DGEY+ +AALW Q PE SVR++ HDPKG+    +L++FV+ YFLL+V T+G
Sbjct: 441 KFPIQMYCNDGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITLAIFVILYFLLAVATFG 500

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
           +S+S G                                 +FIP LL GAAWGRL    L 
Sbjct: 501 LSMSSG---------------------------------LFIPSLLIGAAWGRLIGSGLS 527

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            +FP    ++PGKYAL+GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+
Sbjct: 528 RLFPNCVVLNPGKYALLGAAAQLGGVVRMTISLTAILIEATQGISFGLPLIIVLIMAKWV 587

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIH Q++GIP+L W+ PPLS+NI A  + SHP++ L+ +E VG+II++LK 
Sbjct: 588 GDFFNEGIYDIHTQMAGIPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIIELLKC 647

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD       SSD  E  S                             GR  G
Sbjct: 648 VTFNGFPVVD-----PPSSDEIEIHSY----------------------------GRFRG 674

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++KI+ +N ++ D  LS +IF  EY                        
Sbjct: 675 LILRSQLIVLLQNKIFNKNLDYWDRSLSIKIFRKEY------------------------ 710

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP+++ + V+E ++++ + L  FMN SP++VQ
Sbjct: 711 --------------------------PRYPTIDQVTVTEEEKTYMIDLRPFMNPSPYTVQ 744

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRH+ VVN+ N V+G+ITRKD+AR+R+W+H G MGL+EL I+  
Sbjct: 745 HSATLPRTFRLFRALGLRHLPVVNDTNEVIGIITRKDVARFRIWKHRGNMGLDELLITDK 804

Query: 482 L 482
           +
Sbjct: 805 I 805

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201523|gb|EFN81286.1| Chloride channel protein 7 [Harpegnathos saltator]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/481 (43%), Positives = 283/481 (58%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K+ VQMYC  GEYN +A+LW Q PE SVR++ HDPKG+    +L++FVV YF L+  T+G
Sbjct: 441 KYPVQMYCKSGEYNAVASLWFQTPESSVRSLFHDPKGSHNDMTLAIFVVLYFFLAASTFG 500

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
           +S+S G                                 +FIP LL G+AWGRL    L 
Sbjct: 501 LSMSSG---------------------------------LFIPSLLIGSAWGRLIGSGLS 527

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            ++P    +DPGKYAL+GAAAQLGGVVRMTISLT ILIEAT  ISFGLP+++ LI AKW+
Sbjct: 528 KLWPNCVVLDPGKYALLGAAAQLGGVVRMTISLTAILIEATQGISFGLPVIIVLIMAKWV 587

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIH Q++GIPL+ W+PPPLSSNI A  + SHPV+ LR +E VG+I+++LK 
Sbjct: 588 GDFFNEGIYDIHTQMAGIPLIPWEPPPLSSNIYASEIMSHPVVTLRTVENVGHIVELLKC 647

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD       SSD +E ++                             GR  G
Sbjct: 648 VTFNGFPVVD-----PPSSDQSEINTY----------------------------GRFRG 674

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++KI+ E   + D  L  +IF  EY                        
Sbjct: 675 LILRSQLIVLLQNKIFNEYAEFWDKSLDIKIFRKEY------------------------ 710

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP++  +VV+E ++++T+ L  FMN +P+++Q
Sbjct: 711 --------------------------PRYPTIEQVVVTEEEKTYTIDLRHFMNPAPYTLQ 744

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRH+ VVN+ N VVG+ITRKD+ R+R+W+H GRMGL+EL I++ 
Sbjct: 745 HSATLPRAFRLFRALGLRHLPVVNDTNEVVGIITRKDVTRFRIWKHQGRMGLDELIITNK 804

Query: 482 L 482
           +
Sbjct: 805 I 805

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796366|gb|EFZ18907.1| hypothetical protein SINV_06598 [Solenopsis invicta]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/481 (44%), Positives = 281/481 (58%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K  VQMYC +GEYN +A+LW Q PE SVR++ HDPKGA    +L++FVV YF L+  T+G
Sbjct: 411 KFPVQMYCAEGEYNAVASLWFQTPESSVRSLFHDPKGAHDDLTLAIFVVLYFFLAATTFG 470

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
                                            LS S G+FIP LL G+AWGRL    L 
Sbjct: 471 ---------------------------------LSMSSGLFIPSLLIGSAWGRLIGSGLA 497

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            + P    +DPGKYAL+GAAAQLGGVVRMTISLT ILIEAT  I FGLP+++ LI AKW+
Sbjct: 498 KLCPNCEVLDPGKYALLGAAAQLGGVVRMTISLTAILIEATQGIYFGLPVIIVLIMAKWV 557

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIHIQ++GIPLL W+ PPLS+NI A  + SHPV+ L+ +E VG+I+++LK 
Sbjct: 558 GDFFNEGIYDIHIQMAGIPLLPWESPPLSNNIYATEIMSHPVVALKTVENVGHIVELLKC 617

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD       SSD AE  S                             GRL G
Sbjct: 618 VTFNGFPVVD-----PPSSDQAEIISY----------------------------GRLRG 644

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+K+K++ E + + +  L+  +F  EY                        
Sbjct: 645 LILRSQLIVLLKNKVFNEYEEFWEKPLTINMFRNEY------------------------ 680

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP++  + +++ ++++TV L  FMN SP++VQ
Sbjct: 681 --------------------------PRYPTIEQVAITDEEKTYTVDLRHFMNPSPYTVQ 714

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRHV VVN+ N V+G+ITRKD+AR+R+W+H GRMGL+EL I++ 
Sbjct: 715 HSATLPRTFRLFRALGLRHVPVVNDTNEVIGIITRKDVARFRIWKHRGRMGLDELLITNK 774

Query: 482 L 482
           +
Sbjct: 775 I 775

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725063|ref|XP_003400894.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Bombus terrestris]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/481 (42%), Positives = 279/481 (58%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K  +QMYC +GEY+ +AALW Q PE SVR++ HDPKG+    +L++FVV YF L+V T+G
Sbjct: 439 KFPIQMYCKEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITLAIFVVLYFFLAVATFG 498

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
           +S+S G                                 +FIP LL G+AWGRL    L 
Sbjct: 499 LSMSSG---------------------------------LFIPSLLIGSAWGRLIGSGLA 525

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            +FP    +DPGKYAL+GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+
Sbjct: 526 KVFPNCVVLDPGKYALLGAAAQLGGVVRMTISLTAILIEATQGISFGLPLIVVLIMAKWV 585

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIH Q++GIP+L W+ PPLS+NI A  + SHP++ L+ +E VG+I+++LK 
Sbjct: 586 GDFFNEGIYDIHTQMAGIPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIVELLKC 645

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD                                     D +   S GR  G
Sbjct: 646 VTFNGFPVVD---------------------------------PPNSDETEIHSYGRFRG 672

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++KI+  N  + +  LS ++F  EY                        
Sbjct: 673 LILRSQLIVLLQNKIFNRNLEYWEKSLSVKLFRKEY------------------------ 708

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP+++ + +SE ++++ + L  FMN SP+++Q
Sbjct: 709 --------------------------PRYPTIDQVTISEEEKTYMIDLRPFMNPSPYTLQ 742

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRH+ VVN+ N V+G+ITRKD+AR+R+W H GRMGL+EL I++ 
Sbjct: 743 HSATLPRAFRLFRALGLRHLPVVNDTNEVIGIITRKDVARFRIWEHRGRMGLDELLITNK 802

Query: 482 L 482
           +
Sbjct: 803 I 803

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398489|ref|XP_003485207.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like [Bombus impatiens]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/481 (42%), Positives = 279/481 (58%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K  +QMYC +GEY+ +AALW Q PE SVR++ HDPKG+    +L++FVV YF L+V T+G
Sbjct: 438 KFPIQMYCKEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDITLAIFVVLYFFLAVATFG 497

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
           +S+S G                                 +FIP LL G+AWGRL    L 
Sbjct: 498 LSMSSG---------------------------------LFIPSLLIGSAWGRLIGSGLA 524

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            IFP    +DPGKYAL+GAAAQLGGVVRMTISLT ILIEAT  ISFGLPL++ LI AKW+
Sbjct: 525 KIFPNCVVLDPGKYALLGAAAQLGGVVRMTISLTAILIEATQGISFGLPLIVVLIMAKWV 584

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIH Q++GIP+L W+ PPLS+NI A  + SHP++ L+ +E VG+I+++LK 
Sbjct: 585 GDFFNEGIYDIHTQMAGIPILPWEAPPLSNNIYASEIMSHPIVTLKTVENVGHIVELLKC 644

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD                                     D +   S GR  G
Sbjct: 645 VTFNGFPVVD---------------------------------PPNSDETEIHSYGRFRG 671

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++KI+  N  + +  LS ++F  EY                        
Sbjct: 672 LILRSQLIVLLQNKIFNRNLEYWEKSLSIKLFRKEY------------------------ 707

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP+++ + +SE ++++ + L  FMN SP+++Q
Sbjct: 708 --------------------------PRYPTIDQVTISEEEKTYMIDLRPFMNPSPYTLQ 741

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRH+ VVN+ N V+G+ITRKD+AR+R+W H GRMGL+EL I++ 
Sbjct: 742 HSATLPRAFRLFRALGLRHLPVVNDTNEVIGIITRKDVARFRIWEHRGRMGLDELLITNK 801

Query: 482 L 482
           +
Sbjct: 802 I 802

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486889|ref|XP_003425578.1| PREDICTED: H(+)/Cl(-) exchange transporter 7 [Nasonia vitripennis]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/477 (42%), Positives = 279/477 (58%), Gaps = 116/477 (24%)

Query: 6   QMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVS 65
           ++ C +G Y+ +AALW Q PE SVR++ HDP G+    +L+VFV+ YF+L+V+T+G+S+S
Sbjct: 464 KLSCKNGSYSAVAALWFQTPESSVRSLFHDPSGSHSDVTLAVFVILYFILAVFTFGLSMS 523

Query: 66  GGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFP 125
           GG                                 +FIP LL GAAWGRL    L  I P
Sbjct: 524 GG---------------------------------LFIPSLLIGAAWGRLIGSGLARICP 550

Query: 126 EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF 185
              ++DPGKYAL+GAAAQLGGVVRMTISLT ILIE+T  ISFGLP+++ LITAKW+GDFF
Sbjct: 551 HCAFVDPGKYALLGAAAQLGGVVRMTISLTAILIESTQGISFGLPVIIVLITAKWVGDFF 610

Query: 186 TEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHN 245
            EG+YDIHIQ++G+PLL W+ PPLS+NI A  + SHPV+ L+  E VG+++++LK  S N
Sbjct: 611 NEGIYDIHIQMAGVPLLPWEAPPLSNNIYASEIMSHPVVTLKSTENVGHVVEMLKCVSFN 670

Query: 246 GFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILR 305
           GFP+VD                                    GD       GRL G+ILR
Sbjct: 671 GFPVVD---------------------------------PPWGDQEEINCYGRLRGMILR 697

Query: 306 SQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHK 365
           SQLI+L+++KI+ E   + D  LS +IF  EY                            
Sbjct: 698 SQLIVLLQNKIFNEYSEFWDKDLSIKIFRNEY---------------------------- 729

Query: 366 IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTS 425
                                 PRYP++ D+ +++ +++FT+ L   MN SP++++ S +
Sbjct: 730 ----------------------PRYPTIEDISITDEEKTFTMDLRPIMNPSPYTLKHSAT 767

Query: 426 LPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISSTL 482
           LPR F+LFRALGLRH+ VVN+ N V+GMITRKD+ARYR+W+H GRMGL+EL I++ L
Sbjct: 768 LPRAFRLFRALGLRHLPVVNDTNEVIGMITRKDVARYRIWKHQGRMGLDELSITNKL 824

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865255|ref|XP_003708090.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like isoform 2 [Megachile rotundata]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/481 (43%), Positives = 281/481 (58%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K  +QMYC +GEY+ +AALW Q PE SVR++ HDPKG+    +L++FV+ YF L+V T+G
Sbjct: 442 KFPIQMYCNEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDLTLAIFVILYFFLAVATFG 501

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
                                            LS S G+FIP LL G+AWGRL    L 
Sbjct: 502 ---------------------------------LSMSSGLFIPSLLIGSAWGRLIGSGLT 528

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            +FP    + PGKYAL+GAAAQLGGVVRMTISLT ILIEAT  ISFGLP+++ LI AKW+
Sbjct: 529 RLFPNCIVLVPGKYALLGAAAQLGGVVRMTISLTAILIEATQGISFGLPVIIVLIMAKWV 588

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIH Q++GIP+LAW+ PPLS+NI A  + SHPV+ L+ +E VG+I+++LK 
Sbjct: 589 GDFFNEGIYDIHTQMAGIPILAWEAPPLSNNIYASEIMSHPVVTLKTVENVGHILELLKC 648

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD       SSD  E +S                             GR  G
Sbjct: 649 VTFNGFPVVD-----PPSSDETEINSY----------------------------GRFRG 675

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++KI+ E   + +  LS ++F  EY                        
Sbjct: 676 LILRSQLIVLLQNKIFNEYAEYWEKSLSIKMFRKEY------------------------ 711

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP++  + +SE ++++ + L  FMN SP++V+
Sbjct: 712 --------------------------PRYPTIEQVTISEEEKTYMIDLRPFMNPSPYTVK 745

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRH+ VVN+ N V+G+ITRKD+AR+R+W+H GRMGL+EL I++ 
Sbjct: 746 HSATLPRTFRLFRALGLRHLPVVNDTNEVIGIITRKDVARFRIWKHRGRMGLDELLITNK 805

Query: 482 L 482
           +
Sbjct: 806 I 806

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865253|ref|XP_003708089.1| PREDICTED: H(+)/Cl(-) exchange transporter 7-like isoform 1 [Megachile rotundata]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/481 (43%), Positives = 281/481 (58%), Gaps = 116/481 (24%)

Query: 2   KHAVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYG 61
           K  +QMYC +GEY+ +AALW Q PE SVR++ HDPKG+    +L++FV+ YF L+V T+G
Sbjct: 445 KFPIQMYCNEGEYSAVAALWFQTPESSVRSLFHDPKGSHNDLTLAIFVILYFFLAVATFG 504

Query: 62  VSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ 121
                                            LS S G+FIP LL G+AWGRL    L 
Sbjct: 505 ---------------------------------LSMSSGLFIPSLLIGSAWGRLIGSGLT 531

Query: 122 SIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWI 181
            +FP    + PGKYAL+GAAAQLGGVVRMTISLT ILIEAT  ISFGLP+++ LI AKW+
Sbjct: 532 RLFPNCIVLVPGKYALLGAAAQLGGVVRMTISLTAILIEATQGISFGLPVIIVLIMAKWV 591

Query: 182 GDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKA 241
           GDFF EG+YDIH Q++GIP+LAW+ PPLS+NI A  + SHPV+ L+ +E VG+I+++LK 
Sbjct: 592 GDFFNEGIYDIHTQMAGIPILAWEAPPLSNNIYASEIMSHPVVTLKTVENVGHILELLKC 651

Query: 242 TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG 301
            + NGFP+VD       SSD  E +S                             GR  G
Sbjct: 652 VTFNGFPVVD-----PPSSDETEINSY----------------------------GRFRG 678

Query: 302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL 361
           LILRSQLI+L+++KI+ E   + +  LS ++F  EY                        
Sbjct: 679 LILRSQLIVLLQNKIFNEYAEYWEKSLSIKMFRKEY------------------------ 714

Query: 362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ 421
                                     PRYP++  + +SE ++++ + L  FMN SP++V+
Sbjct: 715 --------------------------PRYPTIEQVTISEEEKTYMIDLRPFMNPSPYTVK 748

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISST 481
            S +LPR F+LFRALGLRH+ VVN+ N V+G+ITRKD+AR+R+W+H GRMGL+EL I++ 
Sbjct: 749 HSATLPRTFRLFRALGLRHLPVVNDTNEVIGIITRKDVARFRIWKHRGRMGLDELLITNK 808

Query: 482 L 482
           +
Sbjct: 809 I 809

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
UNIPROTKB|P51798	805	CLCN7 "H(+)/Cl(-) exchange tra	0.325	0.195	0.603	1.5e-96
MGI|MGI:1347048	803	Clcn7 "chloride channel 7" [Mu	0.325	0.195	0.603	1.8e-96
ZFIN|ZDB-GENE-061103-196	795	clcn7 "chloride channel 7" [Da	0.323	0.196	0.616	2e-96
RGD|61836	803	Clcn7 "chloride channel, volta	0.325	0.195	0.597	3.2e-96
UNIPROTKB|E2R0Q0	747	CLCN7 "Uncharacterized protein	0.327	0.211	0.593	7.1e-96
UNIPROTKB|F1RG09	809	LOC100626534 "Uncharacterized	0.325	0.194	0.616	9.5e-96
UNIPROTKB|Q4PKH3	809	CLCN7 "H(+)/Cl(-) exchange tra	0.325	0.194	0.603	1.3e-94
WB|WBGene00000533	796	clh-6 [Caenorhabditis elegans	0.325	0.197	0.592	6.9e-83
UNIPROTKB|H0Y2M6	901	CLCN7 "Chloride channel 7, iso	0.325	0.174	0.603	3.3e-81
FB|FBgn0033755	813	ClC-b "Chloride channel-b" [Dr	0.325	0.193	0.531	1.3e-80

UNIPROTKB|P51798 CLCN7 "H(+)/Cl(-) exchange transporter 7" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 1.5e-96, Sum P(3) = 1.5e-96
 Identities = 96/159 (60%), Positives = 121/159 (76%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+GAAAQLGG+VRMT+SL
Sbjct:   507 LTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSL 566

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  +P L W+ P  S ++T
Sbjct:   567 TVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLT 626

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 251
             AR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   627 AREVMSTPVTCLRRREKVGVIVDVLSDTASNHNGFPVVE 665

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009268 "response to pH" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005254 "chloride channel activity" evidence=TAS

GO:0006810 "transport" evidence=TAS

MGI|MGI:1347048 Clcn7 "chloride channel 7" [Mus musculus (taxid:10090)]

 Score = 502 (181.8 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
 Identities = 96/159 (60%), Positives = 121/159 (76%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+GAAAQLGG+VRMT+SL
Sbjct:   505 LTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSL 564

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  +P L W+ P  S ++T
Sbjct:   565 TVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLT 624

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 251
             AR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   625 AREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVE 663

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0009268 "response to pH" evidence=ISO

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-061103-196 clcn7 "chloride channel 7" [Danio rerio (taxid:7955)]

 Score = 508 (183.9 bits), Expect = 2.0e-96, Sum P(3) = 2.0e-96
 Identities = 98/159 (61%), Positives = 120/159 (75%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFP-EATWIDPGKYALIGAAAQLGGVVRMTIS 153
             L+ S GVFIP LL GAAWGRLF + L  I   ++ W DPGKYALIGAAAQLGG+VRMT+S
Sbjct:   495 LTVSAGVFIPSLLIGAAWGRLFGILLSFITTSKSIWADPGKYALIGAAAQLGGIVRMTLS 554

Query:   154 LTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNI 213
             LT+IL+EATGN+++G P+ML L+TAK +GD+F EGLYDIHI+L  +P L W+ PP S  +
Sbjct:   555 LTVILVEATGNVTYGFPIMLVLMTAKIVGDYFVEGLYDIHIKLQSVPFLHWEAPPTSHWL 614

Query:   214 TARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIV 250
             TAR V S  V C   +E VG I+DVL  TS  HNGFP+V
Sbjct:   615 TAREVMSSQVTCFNRIEKVGTIVDVLSNTSTNHNGFPVV 653

GO:0005216 "ion channel activity" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|61836 Clcn7 "chloride channel, voltage-sensitive 7" [Rattus norvegicus (taxid:10116)]

 Score = 500 (181.1 bits), Expect = 3.2e-96, Sum P(3) = 3.2e-96
 Identities = 95/159 (59%), Positives = 121/159 (76%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP LL GAAWGRLF + +  +   A W DPGKYAL+GAAAQLGG+VRMT+SL
Sbjct:   505 LTVSAGVFIPSLLIGAAWGRLFGISMSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSL 564

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  +P L W+ P  S ++T
Sbjct:   565 TVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLT 624

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 251
             AR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   625 AREVMSTPVTCLRRREKVGIIVDVLSDTASNHNGFPVVE 663

GO:0003674 "molecular_function" evidence=ND

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0009268 "response to pH" evidence=IDA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

UNIPROTKB|E2R0Q0 CLCN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 501 (181.4 bits), Expect = 7.1e-96, Sum P(3) = 7.1e-96
 Identities = 95/160 (59%), Positives = 121/160 (75%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+GAAAQLGG+VRMT+SL
Sbjct:   449 LTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSL 508

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  +P L W+ P  S ++T
Sbjct:   509 TVIMMEATSNVTYGFPIMLVLMTAKIVGDIFIEGLYDMHIQLQSVPFLHWEAPVTSHSLT 568

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIVDV 252
             AR V S PV CLR  E VG I+D+L  T+  HNGFP+V++
Sbjct:   569 AREVMSTPVTCLRRREKVGVIVDILSDTTSNHNGFPVVEL 608

GO:0016021 "integral to membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

UNIPROTKB|F1RG09 LOC100626534 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 508 (183.9 bits), Expect = 9.5e-96, Sum P(3) = 9.5e-96
 Identities = 98/159 (61%), Positives = 121/159 (76%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP LL GAAWGRLF + L  I   A W DPGKYAL+GAAAQLGG+VRMT+SL
Sbjct:   511 LTVSAGVFIPSLLIGAAWGRLFGISLSYITGAAIWADPGKYALMGAAAQLGGIVRMTLSL 570

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  +P L W+ P  S ++T
Sbjct:   571 TVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLT 630

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 251
             AR V S PV CLR  E VG I+DVL   A++HNGFP+VD
Sbjct:   631 AREVMSAPVTCLRRREKVGVIVDVLSNSASNHNGFPVVD 669

GO:0016021 "integral to membrane" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

UNIPROTKB|Q4PKH3 CLCN7 "H(+)/Cl(-) exchange transporter 7" [Bos taurus (taxid:9913)]

 Score = 501 (181.4 bits), Expect = 1.3e-94, Sum P(3) = 1.3e-94
 Identities = 96/159 (60%), Positives = 121/159 (76%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP LL GAAWGRLF + L  I   A W DPGKYAL+GAAAQLGG+VRMT+SL
Sbjct:   511 LTVSAGVFIPSLLIGAAWGRLFGISLSYITGAAVWADPGKYALMGAAAQLGGIVRMTLSL 570

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T+I++EAT ++++G P+ML L+TAK +GD F EGLYD+HIQL  +P L W+ P  S ++T
Sbjct:   571 TVIMMEATSSVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLT 630

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLKATS--HNGFPIVD 251
             AR V S PV CLR  E VG I+DVL +T+  HNGFP+V+
Sbjct:   631 AREVMSTPVTCLRRREKVGVIVDVLSSTASNHNGFPVVE 669

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

WB|WBGene00000533 clh-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 509 (184.2 bits), Expect = 6.9e-83, Sum P(3) = 6.9e-83
 Identities = 93/157 (59%), Positives = 119/157 (75%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             +S   GVFIP +LTGAAWGRLF +F++ +FP  T IDPGKYAL GAAAQLGGVVRMTISL
Sbjct:   491 ISVPSGVFIPAILTGAAWGRLFGIFVERLFPSVTGIDPGKYALAGAAAQLGGVVRMTISL 550

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T I++EAT +I+FGLP+ML L+  KW+GD F EGLYD HI L+ +P+L W+PP +S NI 
Sbjct:   551 TAIIMEATKDITFGLPIMLVLMVTKWVGDMFNEGLYDAHIDLAEVPILGWNPPKMSRNIL 610

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
             A  V    V+ L   E V  I+++L++T H+GFP+VD
Sbjct:   611 ADRVMRKDVVALERRERVSRIVEILRSTLHHGFPVVD 647

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0Y2M6 CLCN7 "Chloride channel 7, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 3.3e-81, Sum P(3) = 3.3e-81
 Identities = 96/159 (60%), Positives = 121/159 (76%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP LL GAAWGRLF + L  +   A W DPGKYAL+GAAAQLGG+VRMT+SL
Sbjct:   483 LTVSAGVFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSL 542

Query:   155 TIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNIT 214
             T+I++EAT N+++G P+ML L+TAK +GD F EGLYD+HIQL  +P L W+ P  S ++T
Sbjct:   543 TVIMMEATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLT 602

Query:   215 ARIVKSHPVICLRPLETVGNIIDVLK--ATSHNGFPIVD 251
             AR V S PV CLR  E VG I+DVL   A++HNGFP+V+
Sbjct:   603 AREVMSTPVTCLRRREKVGVIVDVLSDTASNHNGFPVVE 641

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0033755 ClC-b "Chloride channel-b" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
 Identities = 84/158 (53%), Positives = 115/158 (72%)

Query:    95 LSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISL 154
             L+ S GVFIP  L GAAWGRL ++    +FP+A ++ PGKYALIGAAA LGGV+RMTISL
Sbjct:   531 LNVSLGVFIPTALVGAAWGRLLAMLTYYVFPQAEFLHPGKYALIGAAANLGGVLRMTISL 590

Query:   155 TIILIEATG-NISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNI 213
             ++IL+E TG   SF  PL++ LI+AKW+GD+F EG+YD  IQ++ +P+L W+P P    +
Sbjct:   591 SVILMETTGVETSFFFPLIIALISAKWVGDYFNEGIYDTQIQVNHVPMLTWEPLPQYKGL 650

Query:   214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD 251
              AR + S PVIC++  ++   I ++LK   HNGFP+VD
Sbjct:   651 KAREILSKPVICIKIRDSANYIYEMLKKCDHNGFPVVD 688

GO:0005254 "chloride channel activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005247 "voltage-gated chloride channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0050975 "sensory perception of touch" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	482
cd03685	466	cd03685, ClC_6_like, ClC-6-like chloride channel p	1e-55
cd01036	416	cd01036, ClC_euk, Chloride channel, ClC	2e-31
cd03684	445	cd03684, ClC_3_like, ClC-3-like chloride channel p	6e-27
pfam00654	345	pfam00654, Voltage_CLC, Voltage gated chloride cha	3e-23
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	2e-20
cd03683	426	cd03683, ClC_1_like, ClC-1-like chloride channel p	7e-20
cd00400	383	cd00400, Voltage_gated_ClC, CLC voltage-gated chlo	1e-15
COG0038	443	COG0038, EriC, Chloride channel protein EriC [Inor	1e-13
pfam00571	57	pfam00571, CBS, CBS domain	5e-11
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-10
cd01031	402	cd01031, EriC, ClC chloride channel EriC	6e-10
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	6e-09
PRK05277	438	PRK05277, PRK05277, chloride channel protein; Prov	8e-08
PRK01862	574	PRK01862, PRK01862, putative voltage-gated ClC-typ	8e-08
cd01034	390	cd01034, EriC_like, ClC chloride channel family	2e-07
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	3e-07
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	6e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-06
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	7e-06
cd04582	106	cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contain	2e-05
cd04591	105	cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont	4e-05
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	5e-05
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	7e-05
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	3e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	3e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	5e-04
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	7e-04
cd04603	111	cd04603, CBS_pair_KefB_assoc, This cd contains two	9e-04
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	0.001
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	0.001
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.001
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.002
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	0.002
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	0.002
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	0.003
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	0.003
cd04639	111	cd04639, CBS_pair_26, The CBS domain, named after	0.003
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.004
cd01033	388	cd01033, ClC_like, Putative ClC chloride channel	0.004

>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins

 Score =  192 bits (489), Expect = 1e-55
 Identities = 71/159 (44%), Positives = 96/159 (60%), Gaps = 34/159 (21%)

Query: 44  SLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFI 103
           +L +F V Y+ L+ WT+G++V  G                                 +FI
Sbjct: 335 TLLIFFVLYYFLACWTFGIAVPSG---------------------------------LFI 361

Query: 104 PCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG 163
           P +L GAA+GRL  + L S F   T IDPG YAL+GAAA LGGV+RMT+SLT+IL+E T 
Sbjct: 362 PMILIGAAYGRLVGILLGSYF-GFTSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTN 420

Query: 164 NISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLL 202
           N+++  P+ML L+ AKW+GD+F EG+YDI IQL G+P L
Sbjct: 421 NLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFL 459

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466

>gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC

 Score =  124 bits (314), Expect = 2e-31
 Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 40/155 (25%)

Query: 44  SLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFI 103
           +L +F++ YF +S   +G++V GG                                  FI
Sbjct: 295 TLLLFLLIYFWMSALAFGIAVPGG---------------------------------TFI 321

Query: 104 PCLLTGAAWGRLFSLFLQSIFPE-------ATWIDPGKYALIGAAAQLGGVVRMTISLTI 156
           P L+ GAA GRL  L +  I            W DPG YALIGAAA LGG  R+T S+ +
Sbjct: 322 PSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICV 381

Query: 157 ILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD 191
           I++E TG++   LPLM+ ++ AK + D F E LY 
Sbjct: 382 IMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH 416

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 416

>gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins

 Score =  112 bits (282), Expect = 6e-27
 Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 14/118 (11%)

Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSI---FPEATW----------IDPGKYALIGAAAQLG 145
            G+F+P +  GA +GR+  + ++ +   +P++ +          I PG YA++GAAA LG
Sbjct: 328 AGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLG 387

Query: 146 GVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLL 202
           GV RMT+SL +I+ E TG +++ LPLM+ ++ +KW+ D    EG+YD HI L+G P L
Sbjct: 388 GVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL 445

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles. Length = 445

>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel

 Score =  100 bits (251), Expect = 3e-23
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 36/156 (23%)

Query: 29  VRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKP 88
           ++ +L+       +  L + ++   L +  + G   SG                      
Sbjct: 226 IQLLLNG--STLSLLLLLLLLLLKLLATALSLG---SGA--------------------- 259

Query: 89  RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVV 148
                     GG+F P L  GAA GRL  L L  +FP      PG +AL+G AA L GV 
Sbjct: 260 ---------PGGIFAPSLFIGAALGRLLGLLLPLLFPG-IAPSPGAFALLGMAAFLAGVT 309

Query: 149 RMTISLTIILIEATGNISFGLPLMLTLITAKWIGDF 184
           R  ++  +++ E TG+ S  LPLML ++ A  +   
Sbjct: 310 RAPLTAIVLVFELTGSYSLLLPLMLAVLIAYLVSRL 345

This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. In terms of primary structure, they are unrelated to known cation channels or other types of anion channels. Three ClC subfamilies are found in animals. ClC-1 is involved in setting and restoring the resting membrane potential of skeletal muscle, while other channels play important parts in solute concentration mechanisms in the kidney. These proteins contain two pfam00571 domains. Length = 345

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 48/118 (40%)

Query: 345 SPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRS 404
              RLVG ILRSQL++ +K+                                        
Sbjct: 36  ESPRLVGYILRSQLVVALKN---------------------------------------- 55

Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
                  +++ SPF+V   TSL +V +LFR LGLRH++VV +   +VG+ITRKDL + 
Sbjct: 56  -------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVV-DEGRLVGIITRKDLLKA 105

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

>gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins

 Score = 91.2 bits (227), Expect = 7e-20
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 7/110 (6%)

Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATW------IDPGKYALIGAAAQLGGVVRMTI 152
            G+F+P  + GAA GRL    +  +FPE         I PG YA++GAAA  G V   T+
Sbjct: 316 AGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTH-TV 374

Query: 153 SLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLL 202
           S+ +I+ E TG IS  LP+++ ++ +  +  F    +YD  I++  +P L
Sbjct: 375 SVAVIIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYL 424

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport. Length = 426

>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel

 Score = 78.0 bits (193), Expect = 1e-15
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 98  SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
            GGVF P L  GAA G  F L L ++FP      PG YAL+G AA L  V+R  ++  ++
Sbjct: 303 PGGVFAPSLFIGAALGAAFGLLLPALFPGLV-ASPGAYALVGMAALLAAVLRAPLTAILL 361

Query: 158 LIEATGNISFGLPLMLTLITA 178
           ++E TG+ S  LPLML ++ A
Sbjct: 362 VLELTGDYSLLLPLMLAVVIA 382

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 383

>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism]

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 98  SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
            GG+F P L  GAA G  F   L  +FP  + ++PG +AL+G AA L    R  ++  ++
Sbjct: 332 PGGIFAPSLFIGAALGLAFGALLGLLFP-PSILEPGLFALLGMAAFLAATTRAPLTAIVL 390

Query: 158 LIEATGNISFGLPLMLTLITAKWIGD-FFTEGLYDIHIQLSGIPLL 202
           ++E TGN    LPL++  + A  +        +Y   +   G P+L
Sbjct: 391 VLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPIL 436

Length = 443

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
            M     +V   TSL    +L R  G+  + VV+ +  +VG++T +DL R 
Sbjct: 4   IMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 392 SVNDLV--VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH 449
           +  DL+  ++E      V +   M     +V   TSL    +L    G+R + VV++   
Sbjct: 41  TERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGR 100

Query: 450 VVGMITRKDLARY 462
           +VG++TR D+ R 
Sbjct: 101 LVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC

 Score = 60.6 bits (148), Expect = 6e-10
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  GA  G LF   L  + P      P  +A+ G AA    VVR  I+  I++
Sbjct: 306 GGIFAPMLALGALLGLLFGTILVQLGPIPI-SAPATFAIAGMAAFFAAVVRAPITAIILV 364

Query: 159 IEATGNISFGLPLMLTLITA 178
            E TGN +  LPLM+  + A
Sbjct: 365 TEMTGNFNLLLPLMVVCLVA 384

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. Length = 402

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463
             +V   T+L    +L R  G+R + VV+    +VG++TR+D+ +  
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +   ++FP+   I+PG +A+ G  A     VR  ++  +++
Sbjct: 319 GGIFAPMLALGTLLGLAFGMVAAALFPQYH-IEPGTFAIAGMGALFAATVRAPLTGIVLV 377

Query: 159 IEATGNISFGLPLMLTLITA 178
           +E T N    LPL++T + A
Sbjct: 378 LEMTDNYQLILPLIITCLGA 397

Length = 438

>gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GGVF P L  GA  G LF L + +++P  T   P  YA++G  A L G  +  +   +++
Sbjct: 337 GGVFTPTLFVGAVVGSLFGLAMHALWPGHT-SAPFAYAMVGMGAFLAGATQAPLMAILMI 395

Query: 159 IEATGNISFGLPLMLTLI----TAKWIGDFFTEGLYDI 192
            E T +    LPLM++ +    TA+ +G   T  +Y+I
Sbjct: 396 FEMTLSYQVVLPLMVSCVVAYFTARALG---TTSMYEI 430

Length = 574

>gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  GA  G L +  L S+         G   L+G AA L GV +  ++  +I+
Sbjct: 304 GGLFAPSLAVGAGLGSLLAALLGSV-------SQGALVLLGMAAFLAGVTQAPLTAFVIV 356

Query: 159 IEATGNISFGLPLMLTLITAKWIGDFF-TEGLYD 191
           +E TG+    LPL+   + A  +      E LY 
Sbjct: 357 MEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 390

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 18/82 (21%)

Query: 396 LVVSENDR------------------SFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALG 437
           LVV EN R                  S    ++  MN +P + +  +S   +  L R   
Sbjct: 29  LVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILALMRERS 88

Query: 438 LRHVVVVNNNNHVVGMITRKDL 459
           +RH+ +++    VVG+ T  DL
Sbjct: 89  IRHLPILDEEGRVVGLATLDDL 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
               +V    ++    +L    G+  + VV+++  +VG++T +DL R
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 395 DLV---VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV 451
           D+V   V+E     T  +   M     +V +   +    +L R   +R + VV+++  +V
Sbjct: 43  DIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLV 102

Query: 452 GMITRKDLAR 461
           G+++  DLAR
Sbjct: 103 GIVSLGDLAR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 402 DRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
                  +   M++   +V   TSL    +L R  G+RH+VVV+++  ++G++++ DL +
Sbjct: 51  GPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463
           +   ++ +  SL    +L R   +RH+ VVN +  +VG++T++DL R  
Sbjct: 1   SPVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
           M     +V+  TS+     L    G+  V VV++   +VG+IT +D+ R   
Sbjct: 5   MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALA 55

Length = 117

>gnl|CDD|239955 cd04582, CBS_pair_ABC_OpuCA_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463
           T P +V+    L     L     LR + VV+ +   +G +TR++ AR  
Sbjct: 1   TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 106

>gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 40/97 (41%)

Query: 220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTS 279
              V+ L    TV ++  +L  TSHNGFP+VD                            
Sbjct: 1   VPLVVLLPEGMTVEDLESLLSTTSHNGFPVVD---------------------------- 32

Query: 280 HKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKI 316
                         E   RLVG ILRSQL++ +K+ I
Sbjct: 33  ------------STEESPRLVGYILRSQLVVALKNYI 57

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 392 SVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV 451
           S+ DL++++ D      ++  M+T   SV        V +LF    L  + VV+    +V
Sbjct: 42  SLRDLLLADPD----TPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLV 97

Query: 452 GMITRKDL 459
           G+IT  D+
Sbjct: 98  GIITVDDV 105

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
               ++  +T++    +L R   +RH+ VV+    +VG++T +DL
Sbjct: 1   RDVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDL 45

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
           M  +  ++    S+    +L     +  + VV+++  +VG++T +DL + 
Sbjct: 76  MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 397 VVSEND--RSFTVKLNL------FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN 448
           +V+E D  R+    ++L       M     +V     +    KL R   +RH +VV+   
Sbjct: 39  IVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGG 98

Query: 449 HVVGMITRKDLAR 461
            +VG+I+ +DL R
Sbjct: 99  ELVGVISIRDLVR 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 398 VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRK 457
           V    R  TV +   M   P +     +L    K      +  + VV+++  +VG+++R 
Sbjct: 47  VPAEGREATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRS 106

Query: 458 DLAR 461
           DL R
Sbjct: 107 DLLR 110

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 26/115 (22%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
           G+LVG++    L               P    + +I    +  Y  ++ + VS+      
Sbjct: 33  GKLVGIVTDRDL-----------KLASPSKATTLDI----WELYYLLSKIKVSD------ 71

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
                 M   P +V    S+    +L     +  + VV++   +VG+IT  DL R
Sbjct: 72  -----IMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
           P  V +ST L  + +  R       +VV+      G++T +D+
Sbjct: 66  PLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDI 108

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|239976 cd04603, CBS_pair_KefB_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
               SV     L    K+   LG R VVVV+  N V+G +T  DL
Sbjct: 1   IQTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDL 45

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
               +V+   +L  V ++     +  V VV+N   VVG+++  DL R 
Sbjct: 1   KDVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
           M+    +V+  T +  +  L    G  HV VV+ +  +VG++T+ DL
Sbjct: 75  MSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDL 121

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 389 RYPSVND------LVVSE--NDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRH 440
           R+P V++      +V S+    +     +   M  +P +V   TS+  V  +    G+  
Sbjct: 27  RFPVVDEKNKVVGIVTSKDVAGKDPDTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEM 86

Query: 441 VVVVNNNNHVVGMITRKDL 459
           + VV++N  ++G+I+R+D+
Sbjct: 87  LPVVDDNKKLLGIISRQDV 105

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
           M T   +V   T L    ++     +  + VV++   +VG+ITR D  R 
Sbjct: 73  MKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
           M    F+VQ   SL  V  L    G ++V VV+ +  +VG+ITR  L  
Sbjct: 60  MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 389 RYPSVNDL-----VVSEND---RSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRH 440
           R+P VN       VV+  D   +  +  +   M  +P +V+  TS+  V ++    G+  
Sbjct: 223 RFPVVNRSMKVVGVVTMRDVLDKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEM 282

Query: 441 VVVVNNNNHVVGMITRKDL 459
           + VV++NN ++G+ITR+D+
Sbjct: 283 LPVVDSNNTLLGIITRQDV 301

Length = 432

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
               P +V   TSL   + L     ++ + VV+    ++G+++  DLAR
Sbjct: 74  EIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLAR 122

Length = 546

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 378 LSSEIFHAEYPRYPSVNDLVVSE----------------NDRSFTVKLNLFMNTSPFSVQ 421
           L   +F       P   D  +                         ++         +V 
Sbjct: 104 LPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPAVTVS 163

Query: 422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHG 468
              S+    +  +  G+  +VV++++  ++G++TRKDL R RV   G
Sbjct: 164 PQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDL-RSRVIADG 209

Length = 610

>gnl|CDD|240010 cd04639, CBS_pair_26, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
           M     +V  S +L  V +L +  G   V VV+ +  +VG++T +++
Sbjct: 62  MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENV 108

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL--ARYRVW 465
            +   M T   +V+  T    +       GL  + V++    +VG++++ DL  A YR W
Sbjct: 316 TVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRNW 375

Query: 466 RHGG 469
               
Sbjct: 376 SQHL 379

Length = 382

>gnl|CDD|238505 cd01033, ClC_like, Putative ClC chloride channel

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+  P L  GA  G L  +   ++ P  +      +ALIGAAA L    +  ++  I++
Sbjct: 302 GGLLTPSLALGALLGALLGIVWNALLPPLSI---AAFALIGAAAFLAATQKAPLTALILV 358

Query: 159 IEATG-NISFGLPLML 173
           +E T  N  F +PLML
Sbjct: 359 LEFTRQNPLFLIPLML 374

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	482
KOG0474|consensus	762		100.0
PRK01862	574	putative voltage-gated ClC-type chloride channel C	100.0
KOG0475|consensus	696		100.0
KOG0476|consensus	931		100.0
cd03685	466	ClC_6_like ClC-6-like chloride channel proteins. T	99.87
cd03684	445	ClC_3_like ClC-3-like chloride channel proteins. T	99.86
PRK01610	418	putative voltage-gated ClC-type chloride channel C	99.86
cd01031	402	EriC ClC chloride channel EriC. This domain is fou	99.84
PRK05277	438	chloride channel protein; Provisional	99.83
cd03683	426	ClC_1_like ClC-1-like chloride channel proteins. T	99.83
COG0038	443	EriC Chloride channel protein EriC [Inorganic ion	99.83
cd01036	416	ClC_euk Chloride channel, ClC. These domains are f	99.79
cd01033	388	ClC_like Putative ClC chloride channel. Clc protei	99.78
PF00654	355	Voltage_CLC: Voltage gated chloride channel Mutati	99.78
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.77
cd01034	390	EriC_like ClC chloride channel family. These prote	99.77
cd03682	378	ClC_sycA_like ClC sycA-like chloride channel prote	99.71
cd00400	383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.68
COG2524	294	Predicted transcriptional regulator, contains C-te	99.67
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.63
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.63
COG4109	432	Predicted transcriptional regulator containing CBS	99.59
PRK03655	414	putative ion channel protein; Provisional	99.52
COG3620	187	Predicted transcriptional regulator with C-termina	99.52
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.5
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.5
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.49
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.49
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.46
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.46
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.44
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.44
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.43
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.43
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.42
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.42
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.41
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.41
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.41
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.4
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.4
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.4
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.4
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.4
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.4
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.39
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.39
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.39
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.38
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.38
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.38
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.37
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.37
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.37
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.37
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.36
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.36
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.36
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.36
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.36
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.35
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.35
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.35
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.35
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.35
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.34
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.34
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.34
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.34
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.33
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.33
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.33
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.33
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.33
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.33
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.32
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.32
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.32
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.31
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.31
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.3
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.3
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.3
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.3
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.3
COG0517	117	FOG: CBS domain [General function prediction only]	99.29
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.29
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.29
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.28
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.28
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.27
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.27
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.27
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.25
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.25
PRK11573	413	hypothetical protein; Provisional	99.24
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.23
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.23
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.22
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.19
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.19
COG2905	610	Predicted signal-transduction protein containing c	99.17
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.16
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.11
cd00400	383	Voltage_gated_ClC CLC voltage-gated chloride chann	99.1
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.06
cd01031	402	EriC ClC chloride channel EriC. This domain is fou	99.02
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.01
PRK05277	438	chloride channel protein; Provisional	98.89
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.87
KOG2550|consensus	503		98.83
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.78
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.66
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.63
cd03682	378	ClC_sycA_like ClC sycA-like chloride channel prote	98.59
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.52
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.5
COG0038	443	EriC Chloride channel protein EriC [Inorganic ion	98.46
KOG1764|consensus	381		98.45
cd01033	388	ClC_like Putative ClC chloride channel. Clc protei	98.37
cd03685	466	ClC_6_like ClC-6-like chloride channel proteins. T	98.33
cd01036	416	ClC_euk Chloride channel, ClC. These domains are f	98.33
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.29
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.29
cd03684	445	ClC_3_like ClC-3-like chloride channel proteins. T	98.2
cd01034	390	EriC_like ClC chloride channel family. These prote	98.13
PF00654	355	Voltage_CLC: Voltage gated chloride channel Mutati	98.11
PRK01610	418	putative voltage-gated ClC-type chloride channel C	98.11
COG2524	294	Predicted transcriptional regulator, contains C-te	98.09
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.08
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.93
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.9
cd03683	426	ClC_1_like ClC-1-like chloride channel proteins. T	97.89
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.88
PRK03655	414	putative ion channel protein; Provisional	97.87
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.85
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.85
COG3620	187	Predicted transcriptional regulator with C-termina	97.85
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.82
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.81
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.79
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.76
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.72
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.7
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.67
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.67
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.66
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.66
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.63
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.6
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.59
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.56
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.56
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.54
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.53
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.53
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.52
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.49
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.48
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.48
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.48
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.47
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.46
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.46
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.46
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.45
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.45
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.44
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.44
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.42
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.42
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.41
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.4
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.39
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.39
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.38
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.37
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.36
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.35
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.35
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.33
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.33
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.31
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.31
COG2905	610	Predicted signal-transduction protein containing c	97.29
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.28
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.27
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.26
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.25
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.23
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.2
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.2
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.19
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.18
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.18
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.17
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.17
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.14
KOG1764|consensus	381		97.13
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.11
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.1
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.09
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.08
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.07
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.07
COG0517	117	FOG: CBS domain [General function prediction only]	97.05
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.04
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.99
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.97
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.9
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.89
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	96.83
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.82
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.74
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.74
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.72
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.71
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.68
COG4109	432	Predicted transcriptional regulator containing CBS	96.5
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.33
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	95.87
PRK11573	413	hypothetical protein; Provisional	95.35
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	94.96
COG1253	429	TlyC Hemolysins and related proteins containing CB	94.63
KOG0474|consensus	762		94.52
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	93.1
KOG2550|consensus	503		92.26
KOG0475|consensus	696		91.43
KOG0476|consensus	931		89.09
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	88.35
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	87.49
KOG2118|consensus	498		81.31

>KOG0474|consensus

Probab=100.00  E-value=4.7e-62  Score=501.81  Aligned_cols=351  Identities=49%  Similarity=0.870  Sum_probs=312.0

Q ss_pred             CceeecCCCccchHHHHHccCchHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccc
Q psy15912          4 AVQMYCGDGEYNTLAALWLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWK   83 (482)
Q Consensus         4 ~~~~~c~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~   83 (482)
                      ..+|+||+|+|||+|++||+.++++|++|||++.+.|+..+|.+|+++|++++++|||+.+|                  
T Consensus       411 ~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~~ef~~~tL~iFfv~yf~L~~~TfGi~vp------------------  472 (762)
T KOG0474|consen  411 CPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPTNEFGILTLAIFFVLYFFLACWTFGIAVP------------------  472 (762)
T ss_pred             CccccCCCCchhHHHHHHcCCcHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhccccc------------------
Confidence            35689999999999999999999999999999889999999999999999999999999999                  


Q ss_pred             cCCCcccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhC
Q psy15912         84 SNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG  163 (482)
Q Consensus        84 ~~~~~~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg  163 (482)
                                     .|+|+|++.+||+.||++|.++..++    +++|+.||++|+||++||++||++|.+||++|+| 
T Consensus       473 ---------------sGlFiP~iL~GAa~GRlvg~~l~~~~----~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-  532 (762)
T KOG0474|consen  473 ---------------SGLFIPVILTGAAYGRLVGMLLGSYT----NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-  532 (762)
T ss_pred             ---------------ccchhHHHHhhHHHHHHHHHHHHHhh----ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-
Confidence                           99999999999999999999998776    3799999999999999999999999999999999 


Q ss_pred             CchhhHHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCCCCCCCccccchhhcccCCeeEecCCCCHHHHHHHHHhCC
Q psy15912        164 NISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATS  243 (482)
Q Consensus       164 ~~~~~~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~  243 (482)
                      +..+.+|+|++.++|++|++.|++++||.+++.+|+|+++.++++.+++++|+|+|++++++++..++++.++++|+++.
T Consensus       533 n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~  612 (762)
T KOG0474|consen  533 NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTN  612 (762)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcC
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCC
Q psy15912        244 HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNW  323 (482)
Q Consensus       244 ~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~  323 (482)
                      ||+|||||+.+.                                      .+.+++.|+|.|++++.+++++.+.+...+
T Consensus       613 HngFPVvd~~~~--------------------------------------~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  613 HNGFPVVDEPPS--------------------------------------NEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             cCCCccccCCCC--------------------------------------ccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            999999998631                                      001479999999999998887654322111


Q ss_pred             CCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccc
Q psy15912        324 PDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDR  403 (482)
Q Consensus       324 p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (482)
                      ..+                                              |+.  .+...+++.+++.++++++.++++++
T Consensus       655 ~~~----------------------------------------------~~~--~~~~~~~d~a~r~~~i~dv~lt~~e~  686 (762)
T KOG0474|consen  655 TFD----------------------------------------------LPV--RRKFTFRDFAKREPSIEDVHLTSEEM  686 (762)
T ss_pred             ccC----------------------------------------------cch--hhcCCHHHhhhcCCchhhhhcchHhH
Confidence            000                                              111  12234455567888999999999999


Q ss_pred             ccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhcccccccccccccc
Q psy15912        404 SFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEELKISS  480 (482)
Q Consensus       404 ~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~~~~~~~~~~~~~~  480 (482)
                      .+++|+.++|+++|++|++++++.+++.+||+.|+||+.||++.++++||+||+|+..++.  .+....+++++++.
T Consensus       687 ~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~~--l~~~~~v~~~~~~~  761 (762)
T KOG0474|consen  687 EMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYRI--LGLEPHVDELKMGK  761 (762)
T ss_pred             hhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHHH--hccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999998873  33345567777654

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=100.00  E-value=2.6e-39  Score=352.18  Aligned_cols=268  Identities=20%  Similarity=0.296  Sum_probs=235.6

Q ss_pred             cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912         63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  135 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~  135 (482)
                      .+.|+||+.++.+++++..|..     +.|+  |++|+|+|++||+|+|++++||++|+++|.+++.++|... ..|..|
T Consensus       294 ~~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~~  372 (574)
T PRK01862        294 EVWGNGYSVVNTILHAPWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHT-SAPFAY  372 (574)
T ss_pred             HHhcCCHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcc-cchHHH
Confidence            5679999999999999877643     3555  9999999999999999999999999999999998777642 467889


Q ss_pred             HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHcCCCCCCCCCCCCccccc
Q psy15912        136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLAWDPPPLSSNIT  214 (482)
Q Consensus       136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~g~p~l~~~~~~~l~~l~  214 (482)
                      +++||+|++++++|+|++++++++|+|+++.+++|+|+++++|+++++.++ +++|+.++++++.+    .+.+.++.++
T Consensus       373 a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~~----~~~~~L~~~~  448 (574)
T PRK01862        373 AMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQDE----AERERLRTTQ  448 (574)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcccc----chhhHHhhCc
Confidence            999999999999999999999999999999999999999999999999885 89999999988743    2456788999


Q ss_pred             hhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q psy15912        215 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKE  294 (482)
Q Consensus       215 a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (482)
                      ++|+|.+++.+++++++++++.+.+++++++.+||+|++                                         
T Consensus       449 V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----------------------------------------  487 (574)
T PRK01862        449 MRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----------------------------------------  487 (574)
T ss_pred             HHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------------------------------------
Confidence            999999999999999999999999999999999999975                                         


Q ss_pred             CCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCC
Q psy15912        295 SPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWP  374 (482)
Q Consensus       295 ~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~  374 (482)
                        ++++|+|+.+|+.+.+....                                                          
T Consensus       488 --g~lvGiVt~~dL~~~l~~~~----------------------------------------------------------  507 (574)
T PRK01862        488 --GRFRGAVALKDITSDLLDKR----------------------------------------------------------  507 (574)
T ss_pred             --CeEEEEEEHHHHHHHhhccc----------------------------------------------------------
Confidence              69999999999876443210                                                          


Q ss_pred             CCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC--CeEEE
Q psy15912        375 DDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN--NHVVG  452 (482)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~--g~lvG  452 (482)
                                                  .....+++++|++++.++++++++.++.+.|.+.+.+++||+|++  ++++|
T Consensus       508 ----------------------------~~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liG  559 (574)
T PRK01862        508 ----------------------------DTTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAG  559 (574)
T ss_pred             ----------------------------ccccchHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEE
Confidence                                        000126788999999999999999999999999999999999876  58999


Q ss_pred             EEeHHHhHHHHH
Q psy15912        453 MITRKDLARYRV  464 (482)
Q Consensus       453 IITr~DLl~~~~  464 (482)
                      +||++|++++..
T Consensus       560 vIt~~DIl~~l~  571 (574)
T PRK01862        560 VVYKTSLLDAYR  571 (574)
T ss_pred             EEEHHHHHHHHH
Confidence            999999998753

>KOG0475|consensus

Probab=100.00  E-value=3.7e-37  Score=318.95  Aligned_cols=300  Identities=31%  Similarity=0.552  Sum_probs=236.9

Q ss_pred             CchHHHHHHhcCCC--Cc---------hhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCccccc
Q psy15912         24 VPEKSVRTMLHDPK--GA---------FGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLS   92 (482)
Q Consensus        24 ~~~~~i~~l~~~~~--~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~   92 (482)
                      ++...+..||++..  ..         -..+.|+..+++|++++++++|+++|                           
T Consensus       370 ~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP---------------------------  422 (696)
T KOG0475|consen  370 NMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVP---------------------------  422 (696)
T ss_pred             hHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCc---------------------------
Confidence            55566777887522  11         12677888899999999999999999                           


Q ss_pred             ccCCCCcceehHHHHHHHHHHHHHHHHHHHhcC-------CCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCc
Q psy15912         93 EQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFP-------EATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNI  165 (482)
Q Consensus        93 ~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~-------~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~  165 (482)
                            +|+|+|||++||+.|+++|.+..++++       ...++.|++||++||||.++|++|+|++.+||++|+||++
T Consensus       423 ------~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l  496 (696)
T KOG0475|consen  423 ------AGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGAL  496 (696)
T ss_pred             ------cceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcc
Confidence                  999999999999999999988777765       2346889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHcCCCCCCCCCCCCccccchhhcccC---C--eeEecCC-CCHHHHHHH
Q psy15912        166 SFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSH---P--VICLRPL-ETVGNIIDV  238 (482)
Q Consensus       166 ~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~~---~--~~~l~~~-~~i~~~~~~  238 (482)
                      ++++|+|+++++++|+++.++ .++||.+++.+|+|+++.++...  ..-+.++|..   +  ...+..+ ++++++..+
T Consensus       497 ~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~  574 (696)
T KOG0475|consen  497 NYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESL  574 (696)
T ss_pred             eeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHH
Confidence            999999999999999999887 68999999999999997654333  3334555542   3  5555554 899999999


Q ss_pred             HHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhc
Q psy15912        239 LKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYK  318 (482)
Q Consensus       239 l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~  318 (482)
                      +.++.+++||||-+++                                         +.+++|++.++|+...+......
T Consensus       575 ~~~t~~sgfpvvl~~~-----------------------------------------sq~lvGfv~rr~l~~~i~~ar~~  613 (696)
T KOG0475|consen  575 MEDTDFSGFPVVLSED-----------------------------------------SQRLVGFVLRRNLFLAILNARKI  613 (696)
T ss_pred             HhhcccCCceEEEccc-----------------------------------------cceeEEEEchHHHHHHHhhhccc
Confidence            9999999999886652                                         36899999999998777643210


Q ss_pred             cCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCcccc
Q psy15912        319 ENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVV  398 (482)
Q Consensus       319 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (482)
                      .. .                             +.+.         ++               .|.++.+..        
T Consensus       614 q~-~-----------------------------~~~~---------~~---------------~f~~~~~~~--------  631 (696)
T KOG0475|consen  614 QS-F-----------------------------IVTT---------SI---------------YFNDPSPSA--------  631 (696)
T ss_pred             cc-c-----------------------------ceec---------cc---------------ccCCCCccc--------
Confidence            00 0                             0000         00               010111100        


Q ss_pred             CccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        399 SENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       399 ~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                       .+.....++++++|+..|++|...+|.+-+.++|++.|++++.|. ++|++.|+||+||+++..
T Consensus       632 -~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  632 -VAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             -cCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence             111235579999999999999999999999999999999999886 699999999999999764

>KOG0476|consensus

Probab=100.00  E-value=1.3e-34  Score=304.02  Aligned_cols=203  Identities=30%  Similarity=0.535  Sum_probs=184.5

Q ss_pred             Cchh-HHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCcccccccCCCCcceehHHHHHHHHHHHHH
Q psy15912         38 GAFG-VFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLF  116 (482)
Q Consensus        38 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~gG~f~Psl~iGa~~G~~~  116 (482)
                      |.++ +..|++|+++||++++++..+.+|                                 .|+|+|.|+|||++||++
T Consensus       437 g~~~~f~tL~lf~l~~F~~siia~TipvP---------------------------------sG~FmPvFViGAafGRlv  483 (931)
T KOG0476|consen  437 GDVSIFGTLVLFFLMYFWMSIIATTIPVP---------------------------------SGVFMPVFVIGAAFGRLV  483 (931)
T ss_pred             CceeeHHHHHHHHHHHHHHHHHHhccccC---------------------------------ccceeeeeeechhhhhhh
Confidence            3444 347899999999999999999999                                 999999999999999999


Q ss_pred             HHHHHHhcCCC-------CCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcCCCh
Q psy15912        117 SLFLQSIFPEA-------TWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGL  189 (482)
Q Consensus       117 g~~~~~~~~~~-------~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~si  189 (482)
                      |+.+..+||+.       ..+.|+.||++|+|||.|++++ ++|.+||++|+||+..+++|+|+++++|+.|+..+..|+
T Consensus       484 GE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTH-TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSi  562 (931)
T KOG0476|consen  484 GEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVTH-TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSI  562 (931)
T ss_pred             hhhheeecccccccCCccCccccchhhhhhhhhhccceee-eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcch
Confidence            99998888863       2478999999999998888876 999999999999999999999999999999999999999


Q ss_pred             hHHHHHHcCCCCCCCCCCC--CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccC
Q psy15912        190 YDIHIQLSGIPLLAWDPPP--LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSS  267 (482)
Q Consensus       190 y~~~L~~~g~p~l~~~~~~--~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~  267 (482)
                      ||.+++.+++||++.-...  ..+++.|.|+|.+++.++..+.+.+++.++|+.++.+.||+||+.+             
T Consensus       563 YDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e-------------  629 (931)
T KOG0476|consen  563 YDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKE-------------  629 (931)
T ss_pred             hhheeeeccCCcCCCCCCcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcc-------------
Confidence            9999999999999976543  5678999999999999999999999999999998899999999863             


Q ss_pred             CCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        268 AGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                                                  +..|+|.|.|++|..+++++
T Consensus       630 ----------------------------smiLlGSV~R~~L~~ll~~~  649 (931)
T KOG0476|consen  630 ----------------------------SMILLGSVARRYLTALLQRH  649 (931)
T ss_pred             ----------------------------cceeeehhHHHHHHHHHHhh
Confidence                                        35799999999999988864

>cd03685 ClC_6_like ClC-6-like chloride channel proteins

Probab=99.87  E-value=1.1e-21  Score=208.40  Aligned_cols=116  Identities=53%  Similarity=0.912  Sum_probs=110.0

Q ss_pred             ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhh
Q psy15912         89 RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFG  168 (482)
Q Consensus        89 ~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~  168 (482)
                      |++|+|+|.+||+|+|+|++||++|+++|.+++.+++.. ..+|+.|+++||+|++++++|+|++++++++|+||+++++
T Consensus       347 t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~-~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l  425 (466)
T cd03685         347 ACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFT-SIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYL  425 (466)
T ss_pred             HHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHcccc-CCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhH
Confidence            999999999999999999999999999999999887643 3789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCCC
Q psy15912        169 LPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWD  205 (482)
Q Consensus       169 ~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~~  205 (482)
                      +|+|+++++|+++++.+++++||.+++.+|+||+++.
T Consensus       426 ~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~  462 (466)
T cd03685         426 PPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG  462 (466)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence            9999999999999999999999999999999999754

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.

>cd03684 ClC_3_like ClC-3-like chloride channel proteins

Probab=99.86  E-value=1.8e-21  Score=205.57  Aligned_cols=148  Identities=37%  Similarity=0.786  Sum_probs=128.7

Q ss_pred             ccCchHHHHHHhcCC-----------------CC-chhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccc
Q psy15912         22 LQVPEKSVRTMLHDP-----------------KG-AFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWK   83 (482)
Q Consensus        22 ~~~~~~~i~~l~~~~-----------------~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~   83 (482)
                      .+++++.++.+|+..                 .. ...++.+++++++|++++++++|.++|                  
T Consensus       266 ~~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~------------------  327 (445)
T cd03684         266 RLDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVP------------------  327 (445)
T ss_pred             ccchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCC------------------
Confidence            457777888887531                 01 124567788889999999999999999                  


Q ss_pred             cCCCcccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhc---CCC----------CCCchhHHHHHHHHHHhhhhhch
Q psy15912         84 SNGKPRSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIF---PEA----------TWIDPGKYALIGAAAQLGGVVRM  150 (482)
Q Consensus        84 ~~~~~~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~---~~~----------~~~~~~~~a~vG~aa~~~g~~~~  150 (482)
                                     ||+|+|+|++||++|+++|.+++.+.   |+.          ...+|+.|+++||+|++++++|+
T Consensus       328 ---------------GG~f~P~l~iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra  392 (445)
T cd03684         328 ---------------AGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRM  392 (445)
T ss_pred             ---------------cceeHHHHHHHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhcc
Confidence                           99999999999999999999998763   321          12678999999999999999999


Q ss_pred             hHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHcCCCCC
Q psy15912        151 TISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLSGIPLL  202 (482)
Q Consensus       151 p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~g~p~l  202 (482)
                      |++++++++|+||++++++|+++++++|+++++.++ +++||.+++.||+||+
T Consensus       393 Plt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~~~~~~siY~~~l~~~g~p~l  445 (445)
T cd03684         393 TVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAHIHLNGYPFL  445 (445)
T ss_pred             chhhhheeeeccCCcccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999999996 7999999999999985

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.86  E-value=2e-21  Score=203.57  Aligned_cols=134  Identities=25%  Similarity=0.300  Sum_probs=120.6

Q ss_pred             cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912         63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  135 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~  135 (482)
                      .+.|+||+.++.+++++..+..     +.|+  |++|+|+|++||+|+|++++||++|.++|.+++.++|... ..+..|
T Consensus       276 ~~~G~G~~~i~~~~~~~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~-~~~~~~  354 (418)
T PRK01610        276 AVWGNGYSVVQSFLTAPPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGE-EITLLL  354 (418)
T ss_pred             HHhCCcHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcc-cchHHH
Confidence            4779999999999998866543     4666  9999999999999999999999999999999998877542 347899


Q ss_pred             HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhc-CCChhHHHHHHc
Q psy15912        136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQLS  197 (482)
Q Consensus       136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~-~~siy~~~L~~~  197 (482)
                      +++||+|++++++|+|++++++++|+||++++++|+|+++++|+.+++.+ ++++|+.++.++
T Consensus       355 a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~  417 (418)
T PRK01610        355 GLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH  417 (418)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence            99999999999999999999999999999999999999999999999987 589999998754

>cd01031 EriC ClC chloride channel EriC

Probab=99.84  E-value=9.1e-21  Score=198.26  Aligned_cols=133  Identities=29%  Similarity=0.418  Sum_probs=121.0

Q ss_pred             ccccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912         62 VSVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  134 (482)
Q Consensus        62 ~~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  134 (482)
                      -.+.|+||+.++..++++..|..     +.|+  |++|+|+|++||+|+|++++||++|+++|.+++.++|... .+|..
T Consensus       262 p~~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~-~~~~~  340 (402)
T cd01031         262 PEALGGGHGLILSLAGGNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPI-SAPAT  340 (402)
T ss_pred             HHHhCCHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccHHH
Confidence            44679999999999999876654     3555  9999999999999999999999999999999998887543 68999


Q ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhc-CCChhHHHHH
Q psy15912        135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQ  195 (482)
Q Consensus       135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~-~~siy~~~L~  195 (482)
                      |+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ .+++||.+++
T Consensus       341 ~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~  402 (402)
T cd01031         341 FAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE  402 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence            999999999999999999999999999999999999999999999999988 5899998764

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.

>PRK05277 chloride channel protein; Provisional

Probab=99.83  E-value=2.5e-20  Score=196.96  Aligned_cols=135  Identities=24%  Similarity=0.432  Sum_probs=123.3

Q ss_pred             ccccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912         62 VSVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  134 (482)
Q Consensus        62 ~~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  134 (482)
                      -.+.|+||+.++.+++++..+..     +.|+  |++|+|+|.+||+|+|++++||++|+++|.+++.++|... .+|..
T Consensus       275 p~~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~~-~~~~~  353 (438)
T PRK05277        275 PAAVGGGFNLIPIALAGNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYH-IEPGT  353 (438)
T ss_pred             hhhcCChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-ccHHH
Confidence            35789999999999999876542     3555  9999999999999999999999999999999999888643 68999


Q ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHc
Q psy15912        135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS  197 (482)
Q Consensus       135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~  197 (482)
                      |+++||+|++++++|+|++++++++|+||++++++|+++++++|+++++.++ +++|+.++++.
T Consensus       354 ~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~  417 (438)
T PRK05277        354 FAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT  417 (438)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 89999998876

>cd03683 ClC_1_like ClC-1-like chloride channel proteins

Probab=99.83  E-value=2.1e-20  Score=196.57  Aligned_cols=119  Identities=34%  Similarity=0.588  Sum_probs=108.2

Q ss_pred             CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCC------CCCCchhHHHHHHHHHHhhhhhchhHHHHH
Q psy15912         85 NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPE------ATWIDPGKYALIGAAAQLGGVVRMTISLTI  156 (482)
Q Consensus        85 ~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~------~~~~~~~~~a~vG~aa~~~g~~~~p~s~~v  156 (482)
                      +.|+  |++|+|+|.+||+|+|+|++||++|+++|.+++.++|+      ....+|+.|+++||+|++++++|+|.++ +
T Consensus       300 ~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-v  378 (426)
T cd03683         300 VVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSVA-V  378 (426)
T ss_pred             HHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHHH-h
Confidence            3555  99999999999999999999999999999999998872      2236799999999999999999997765 6


Q ss_pred             HHHHhhCCchhhHHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCC
Q psy15912        157 ILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAW  204 (482)
Q Consensus       157 i~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~  204 (482)
                      +++|+||++++++|+|+++++|+++++.+++++||.+++.||+||+++
T Consensus       379 lv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~  426 (426)
T cd03683         379 IIFELTGQISHLLPVLIAVLISNAVAQFLQPSIYDSIIKIKKLPYLPD  426 (426)
T ss_pred             eeeeecCCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence            999999999999999999999999999999999999999999999873

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]

Probab=99.83  E-value=4.6e-20  Score=194.51  Aligned_cols=141  Identities=29%  Similarity=0.457  Sum_probs=127.3

Q ss_pred             ccccCCCchhhhhhhccccccc-c----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912         62 VSVSGGGMPEKYDFLSKDNVWK-S----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  134 (482)
Q Consensus        62 ~~~~g~G~~~~~~~l~~~~~~~-~----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  134 (482)
                      -.+.|+||+.++..++++..++ +    +.|.  |++|+|||++||+|.|++++|+++|.++|.++..++|.. ...+..
T Consensus       289 P~~lg~G~~~~~~~~~~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~-~~~~~~  367 (443)
T COG0038         289 PEVLGNGYGLIQLALAGEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPS-ILEPGL  367 (443)
T ss_pred             hhhhCCCccHHHHHHccCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCcc-ccchHH
Confidence            3556999999999999999887 3    3555  999999999999999999999999999999999988764 257889


Q ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhc-CCChhHHHHHHcCCCCCC
Q psy15912        135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQLSGIPLLA  203 (482)
Q Consensus       135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~-~~siy~~~L~~~g~p~l~  203 (482)
                      |+++||++++++++|+|++++++++||||+++.++|+|++++++|.+++.. ++++|+..+++++.+..+
T Consensus       368 ~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (443)
T COG0038         368 FALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILR  437 (443)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcCchhhh
Confidence            999999999999999999999999999999999999999999999999976 489999999999887433

>cd01036 ClC_euk Chloride channel, ClC

Probab=99.79  E-value=3.8e-19  Score=186.58  Aligned_cols=107  Identities=45%  Similarity=0.730  Sum_probs=97.5

Q ss_pred             CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCC-------CCCchhHHHHHHHHHHhhhhhchhHHHH
Q psy15912         85 NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEA-------TWIDPGKYALIGAAAQLGGVVRMTISLT  155 (482)
Q Consensus        85 ~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~-------~~~~~~~~a~vG~aa~~~g~~~~p~s~~  155 (482)
                      +.|.  |++|+|+|.+||+|+|+|++||++|+++|.+++.++|..       ..++|+.|+++||+|++++++|+|++++
T Consensus       301 ~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~  380 (416)
T cd01036         301 LIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSIC  380 (416)
T ss_pred             HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhh
Confidence            3444  888888888899999999999999999999999888732       1368999999999999999999999999


Q ss_pred             HHHHHhhCCchhhHHHHHHHHHHHHHhhhcCCChhH
Q psy15912        156 IILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD  191 (482)
Q Consensus       156 vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~  191 (482)
                      ++++|+||++++++|+|+++++|+++++.+++++||
T Consensus       381 vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY~  416 (416)
T cd01036         381 VIMMELTGDLHHLLPLMVAILIAKAVADAFCESLYH  416 (416)
T ss_pred             hheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            999999999999999999999999999999899986

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.

>cd01033 ClC_like Putative ClC chloride channel

Probab=99.78  E-value=7.1e-19  Score=182.95  Aligned_cols=121  Identities=27%  Similarity=0.374  Sum_probs=109.9

Q ss_pred             cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912         63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  135 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~  135 (482)
                      .+.|+||+.++.+++++..+..     +.|+  |++|+|+|++||+|+|++++||++|+.+|.+++.++|+   .++..|
T Consensus       259 ~~~G~G~~~i~~~~~~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~---~~~~~~  335 (388)
T cd01033         259 QILGNGRALAQLAFSTTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP---LSIAAF  335 (388)
T ss_pred             HHhCCcHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc---ccHHHH
Confidence            4689999999999999865432     3555  99999999999999999999999999999999887764   468899


Q ss_pred             HHHHHHHHhhhhhchhHHHHHHHHHhhC-CchhhHHHHHHHHHHHHHhhhcC
Q psy15912        136 ALIGAAAQLGGVVRMTISLTIILIEATG-NISFGLPLMLTLITAKWIGDFFT  186 (482)
Q Consensus       136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg-~~~~~~Pl~ia~~ia~~v~~~~~  186 (482)
                      +++||+|++++++|+|++++++++|+|| ++++++|+|+++++|+.+++.+.
T Consensus       336 a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~~  387 (388)
T cd01033         336 ALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFIL  387 (388)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999 99999999999999999998764

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease

Probab=99.78  E-value=9.9e-19  Score=180.00  Aligned_cols=131  Identities=34%  Similarity=0.595  Sum_probs=111.3

Q ss_pred             HccCchHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCcccccccCCCCcc
Q psy15912         21 WLQVPEKSVRTMLHDPKGAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGG  100 (482)
Q Consensus        21 ~~~~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~gG  100 (482)
                      .++++++.++.+++++...+.++.+++++++|++++.++++.+++                                 ||
T Consensus       225 ~~g~G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~---------------------------------GG  271 (355)
T PF00654_consen  225 VLGSGYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAP---------------------------------GG  271 (355)
T ss_dssp             GSSSSTTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-B---------------------------------SB
T ss_pred             ccCCcHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCC---------------------------------CC
Confidence            567888999999986545688999999999999999999999999                                 99


Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHH
Q psy15912        101 VFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW  180 (482)
Q Consensus       101 ~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~  180 (482)
                      +|.|++++|+++|++++.+++..+|+....+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++|+.
T Consensus       272 ~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~  351 (355)
T PF00654_consen  272 IFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYL  351 (355)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHH
T ss_pred             EEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999886432479999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q psy15912        181 IGDF  184 (482)
Q Consensus       181 v~~~  184 (482)
                      ++++
T Consensus       352 v~~~  355 (355)
T PF00654_consen  352 VARW  355 (355)
T ss_dssp             HHH-
T ss_pred             HhCC
Confidence            9874

; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.77  E-value=1.9e-17  Score=159.14  Aligned_cols=237  Identities=15%  Similarity=0.193  Sum_probs=158.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH-HHhhhhhchhHHHHHHHHHhhC------Cch-hhHHHHHHHH
Q psy15912        105 CLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAA-AQLGGVVRMTISLTIILIEATG------NIS-FGLPLMLTLI  176 (482)
Q Consensus       105 sl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~a-a~~~g~~~~p~s~~vi~~Eltg------~~~-~~~Pl~ia~~  176 (482)
                      |+.-|.++.+++|....+|+.+. ....+...-.+++ .++..+.+-|-.++.+..-++|      +|+ .+.|+.+.+.
T Consensus        83 siiGGNlvaAlvgvtva~~vgd~-~la~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~Sl  161 (382)
T COG3448          83 SIIGGNLVAALVGVTVAYFVGDP-VLASGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSL  161 (382)
T ss_pred             hhhcchHHHHHHhhhhhhhhCCh-HHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhH
Confidence            55556666666666666665442 1222222223333 3445778888888888777775      444 4567666655


Q ss_pred             HHHHHhhhcC---CChhHH-H-----------------------------HHHcCC--CCCCCC------------CCCC
Q psy15912        177 TAKWIGDFFT---EGLYDI-H-----------------------------IQLSGI--PLLAWD------------PPPL  209 (482)
Q Consensus       177 ia~~v~~~~~---~siy~~-~-----------------------------L~~~g~--p~l~~~------------~~~~  209 (482)
                      +-...+-.|+   +.-|.+ +                             +++.|.  +.-+++            -...
T Consensus       162 iLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~  241 (382)
T COG3448         162 ILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRRR  241 (382)
T ss_pred             HHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHH
Confidence            4333333332   222222 1                             111110  000000            0011


Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ...++..|||+++|+++++++++.++.+.|++++.+.+||+|++                                    
T Consensus       242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~------------------------------------  285 (382)
T COG3448         242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH------------------------------------  285 (382)
T ss_pred             hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccc------------------------------------
Confidence            45678899999999999999999999999999999999999987                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                             .+++|+|+++|+.......        |                                             
T Consensus       286 -------~rl~GiVt~~dl~~~a~~~--------p---------------------------------------------  305 (382)
T COG3448         286 -------RRLVGIVTQRDLLKHARPS--------P---------------------------------------------  305 (382)
T ss_pred             -------cceeeeeeHHHHhhccCcc--------h---------------------------------------------
Confidence                   4899999999986432110        0                                             


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                   |+.          ++.     ...-.++.+|++...+++++++..+..-.|.+.|++++||+|++|+
T Consensus       306 -------------~qr----------lr~-----~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~  357 (382)
T COG3448         306 -------------FQR----------LRF-----LRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK  357 (382)
T ss_pred             -------------HHH----------hhc-----cCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence                         000          000     0112689999999999999999999999999999999999999999


Q ss_pred             EEEEEeHHHhHHHHHhh
Q psy15912        450 VVGMITRKDLARYRVWR  466 (482)
Q Consensus       450 lvGIITr~DLl~~~~~~  466 (482)
                      ++||||.+|++.+...+
T Consensus       358 lvGIvsQtDliaal~r~  374 (382)
T COG3448         358 LVGIVSQTDLIAALYRN  374 (382)
T ss_pred             EEEEeeHHHHHHHHHHH
Confidence            99999999999875544

>cd01034 EriC_like ClC chloride channel family

Probab=99.77  E-value=1.6e-18  Score=180.62  Aligned_cols=125  Identities=29%  Similarity=0.371  Sum_probs=109.6

Q ss_pred             ccccccCCCchhhhhhhcccc--cccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912         60 YGVSVSGGGMPEKYDFLSKDN--VWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  134 (482)
Q Consensus        60 ~~~~~~g~G~~~~~~~l~~~~--~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  134 (482)
                      ++-...|+||+.++++++++.  .|.. +.|+  |++|+|+|++||+|.|++++||++|++++.++.    .   .++..
T Consensus       260 ~~~~~~G~G~~~i~~~~~~~~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~----~---~~~~~  332 (390)
T cd01034         260 SGGLTFGTGYLQARAALEGGGGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLG----S---VSQGA  332 (390)
T ss_pred             CCCccccCcHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhc----C---CCchH
Confidence            344567999999999998764  2322 3555  999999999999999999999999999998653    2   47889


Q ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhH
Q psy15912        135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD  191 (482)
Q Consensus       135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~  191 (482)
                      |+++||+|++++++|+|++++++++|+|+++++++|+++++++|+++++.++ +++||
T Consensus       333 ~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~  390 (390)
T cd01034         333 LVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH  390 (390)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999875 78885

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins

Probab=99.71  E-value=4.1e-17  Score=169.35  Aligned_cols=118  Identities=20%  Similarity=0.240  Sum_probs=103.3

Q ss_pred             cccCCCchhhhh-hhcccccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q psy15912         63 SVSGGGMPEKYD-FLSKDNVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI  138 (482)
Q Consensus        63 ~~~g~G~~~~~~-~l~~~~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~v  138 (482)
                      ...|.||+.++. .++++..+.. +.|+  |++|+|+|++||+|+|++++||++|++++.++.        .++..++++
T Consensus       257 ~~~G~g~~~i~~~~~~~~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~--------~~~~~~~~~  328 (378)
T cd03682         257 RYLGLGTPLIEDSFFGGTVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG--------LPVSLLAAL  328 (378)
T ss_pred             ccccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC--------CCHHHHHHH
Confidence            467999999998 6677765554 4666  999999999999999999999999999998752        357789999


Q ss_pred             HHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcCCChhH
Q psy15912        139 GAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYD  191 (482)
Q Consensus       139 G~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~  191 (482)
                      ||+|++++++|+|++++++++|+|| .+.++|+++++++|+.+++  .+++|+
T Consensus       329 Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~  378 (378)
T cd03682         329 GFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG  378 (378)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence            9999999999999999999999999 5788999999999999986  467774

This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel

Probab=99.68  E-value=1.7e-16  Score=165.22  Aligned_cols=116  Identities=36%  Similarity=0.530  Sum_probs=104.9

Q ss_pred             cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912         63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  135 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~  135 (482)
                      .+.|.||+.++..++++..+..     +.|.  |++|+|+|.+||.|.|++++||++|++++.++..++|.. ..++..+
T Consensus       261 ~~~g~G~~~~~~~~~~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~-~~~~~~~  339 (383)
T cd00400         261 QVLGSGYGAILLALAGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGL-VASPGAY  339 (383)
T ss_pred             HHHcCcHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcc-cCChHHH
Confidence            4678999999999998866432     3555  999999999999999999999999999999999888754 3689999


Q ss_pred             HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHH
Q psy15912        136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAK  179 (482)
Q Consensus       136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~  179 (482)
                      +++||+|++++++|+|++++++++|+||++++++|+++++++||
T Consensus       340 ~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~  383 (383)
T cd00400         340 ALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY  383 (383)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999998875

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.67  E-value=5.3e-16  Score=146.83  Aligned_cols=122  Identities=20%  Similarity=0.368  Sum_probs=112.0

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      +...+++++|++++.++++++++.++...|-+..+++.||+|++                                    
T Consensus       169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d------------------------------------  212 (294)
T COG2524         169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD------------------------------------  212 (294)
T ss_pred             cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC------------------------------------
Confidence            55778999999999999999999999999999999999999975                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                              +++|+++.+|+..++.+..                                                     
T Consensus       213 --------k~vGiit~~dI~~aia~g~-----------------------------------------------------  231 (294)
T COG2524         213 --------KIVGIITLSDIAKAIANGN-----------------------------------------------------  231 (294)
T ss_pred             --------ceEEEEEHHHHHHHHHcCC-----------------------------------------------------
Confidence                    8999999999998876541                                                     


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                         ...+|++||.++++++.+|+.+.+|.++|...+.++|.|+|.+|+
T Consensus       232 -----------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gk  276 (294)
T COG2524         232 -----------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGK  276 (294)
T ss_pred             -----------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCc
Confidence                                               112799999999999999999999999999999999999999999


Q ss_pred             EEEEEeHHHhHHHH
Q psy15912        450 VVGMITRKDLARYR  463 (482)
Q Consensus       450 lvGIITr~DLl~~~  463 (482)
                      .+|||||+|+++..
T Consensus       277 pvGiITrTDIL~~i  290 (294)
T COG2524         277 PVGIITRTDILTRI  290 (294)
T ss_pred             EEEEEehHHHHHHh
Confidence            99999999999854

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.63  E-value=3.3e-15  Score=151.74  Aligned_cols=146  Identities=14%  Similarity=0.102  Sum_probs=125.3

Q ss_pred             CChhHHHHHHcCCCC---CCCCCCCCcc---ccchhhcccCC--eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCC
Q psy15912        187 EGLYDIHIQLSGIPL---LAWDPPPLSS---NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH  258 (482)
Q Consensus       187 ~siy~~~L~~~g~p~---l~~~~~~~l~---~l~a~dvM~~~--~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~  258 (482)
                      .++|...+.++|...   ...++...+.   .++|+|+|.++  +.++++++++.++.+.|..++...+||+|++     
T Consensus       165 dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-----  239 (321)
T PRK11543        165 DALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-----  239 (321)
T ss_pred             HHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-----
Confidence            577888888888766   6666667788   89999999998  9999999999999999988888999999975     


Q ss_pred             CCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccc
Q psy15912        259 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYR  338 (482)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~  338 (482)
                                                            |+++|+|+..|+.+.+....                      
T Consensus       240 --------------------------------------g~~iG~vt~~dl~~~~~~~~----------------------  259 (321)
T PRK11543        240 --------------------------------------QQVQGVFTDGDLRRWLVGGG----------------------  259 (321)
T ss_pred             --------------------------------------CcEEEEecHHHHHHHHhCCC----------------------
Confidence                                                  69999999999876543210                      


Q ss_pred             cccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCce
Q psy15912        339 CRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF  418 (482)
Q Consensus       339 ~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~  418 (482)
                                                                                       ....++.++|++++.
T Consensus       260 -----------------------------------------------------------------~~~~~v~~im~~~~~  274 (321)
T PRK11543        260 -----------------------------------------------------------------ALTTPVNEAMTRGGT  274 (321)
T ss_pred             -----------------------------------------------------------------CcCCcHHHhcCCCCE
Confidence                                                                             001157899999999


Q ss_pred             eeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       419 ~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++.+++++.++++.|.+.+.+++||||++|+++|+||++|++++
T Consensus       275 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        275 TLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            99999999999999999999999999988999999999999975

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.63  E-value=3.8e-15  Score=151.65  Aligned_cols=147  Identities=12%  Similarity=0.147  Sum_probs=121.6

Q ss_pred             CChhHHHHHHcCCCC---CCCCCCCCc---cccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCC
Q psy15912        187 EGLYDIHIQLSGIPL---LAWDPPPLS---SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKH  258 (482)
Q Consensus       187 ~siy~~~L~~~g~p~---l~~~~~~~l---~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~  258 (482)
                      .++|...+.++|...   ...+....+   ..++|+|+|.+  ++.++++++++.++++.|.+++++.+||+|++     
T Consensus       170 dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-----  244 (326)
T PRK10892        170 DALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN-----  244 (326)
T ss_pred             HHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-----
Confidence            567777888888766   555555566   88999999997  89999999999999999988887777778765     


Q ss_pred             CCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccc
Q psy15912        259 SSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYR  338 (482)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~  338 (482)
                                                            |+++|+|+..|+.+.+....                      
T Consensus       245 --------------------------------------g~lvGivt~~Dl~~~~~~~~----------------------  264 (326)
T PRK10892        245 --------------------------------------MKIEGIFTDGDLRRVFDMGI----------------------  264 (326)
T ss_pred             --------------------------------------CcEEEEEecHHHHHHHhcCC----------------------
Confidence                                                  69999999999876432210                      


Q ss_pred             cccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCce
Q psy15912        339 CRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF  418 (482)
Q Consensus       339 ~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~  418 (482)
                                                       .                               ....+++++|++++.
T Consensus       265 ---------------------------------~-------------------------------~~~~~v~~im~~~~~  280 (326)
T PRK10892        265 ---------------------------------D-------------------------------LRQASIADVMTPGGI  280 (326)
T ss_pred             ---------------------------------C-------------------------------cccCCHHHhcCCCCE
Confidence                                             0                               011268899999999


Q ss_pred             eeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       419 ~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++++++++.++++.|.+.+.+++||+| +|+++|+||++|++++.
T Consensus       281 ~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~~  324 (326)
T PRK10892        281 RVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRAG  324 (326)
T ss_pred             EECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhcc
Confidence            999999999999999999999999997 68999999999999764

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.59  E-value=2.3e-15  Score=148.07  Aligned_cols=209  Identities=22%  Similarity=0.355  Sum_probs=160.4

Q ss_pred             CCCCcce--ehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH-------------HHHHhhhhhchhHHHHHHHH
Q psy15912         95 LSDSGGV--FIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG-------------AAAQLGGVVRMTISLTIILI  159 (482)
Q Consensus        95 ~G~~gG~--f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG-------------~aa~~~g~~~~p~s~~vi~~  159 (482)
                      .||..|+  ..--|+|||+---.+..-          +.|+.+.++|             +|.+..|-..    .-==+.
T Consensus        85 LgG~~Gl~k~~sKFvIGAMt~~~i~rY----------~~~g~LlIVGnR~~iq~lAL~~~~AVLvTGGF~----~s~evi  150 (432)
T COG4109          85 LGGRAGLEKELSKFVIGAMTLDAILRY----------LDPGGLLIVGNREDIQLLALENGNAVLVTGGFD----VSDEVI  150 (432)
T ss_pred             eccccchhhhhhhhhhhhhhHHHHHhh----------cCCCceEEEecHHHHHHHHHhcCCeEEEeCCCC----ccHHHH
Confidence            3555666  345789999875544432          2333333333             3333333332    111245


Q ss_pred             HhhCCchhhHHHHHHHHHHHHHhhhcCCChhHHHHHHcCCCCCCCCCCCCccccchhhccc--CCeeEecCCCCHHHHHH
Q psy15912        160 EATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKS--HPVICLRPLETVGNIID  237 (482)
Q Consensus       160 Eltg~~~~~~Pl~ia~~ia~~v~~~~~~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~--~~~~~l~~~~~i~~~~~  237 (482)
                      ++...  .-+|++-...-.+.++...++.+|+.+++..              -++|.|+|.  .+..++++.+++.+..+
T Consensus       151 ~lAne--~~lPvlstsYDTFTVAtmIN~Al~n~lIKkd--------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~  214 (432)
T COG4109         151 KLANE--KGLPVLSTSYDTFTVATMINKALSNQLIKKD--------------IITVEDIMTPLEDTSYLRETDTVEDWLD  214 (432)
T ss_pred             Hhhcc--cCCceEEecccceeHHHHHHHHHHHhhhhhh--------------eeeHHHhccccccceeccccccHHHHHH
Confidence            66664  3469999888888899988999999877643              368999999  58899999999999999


Q ss_pred             HHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhh
Q psy15912        238 VLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIY  317 (482)
Q Consensus       238 ~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~  317 (482)
                      +-.+++|+.|||+|+.                                           .+++|+++-+|+....     
T Consensus       215 l~~kt~~sRfPVvn~~-------------------------------------------~kvvGvVt~rDv~~~~-----  246 (432)
T COG4109         215 LVEKTGHSRFPVVNRS-------------------------------------------MKVVGVVTMRDVLDKK-----  246 (432)
T ss_pred             HHHHcCCCccceeccc-------------------------------------------ceEEEEEEehhhhcCC-----
Confidence            9999999999999986                                           6999999999864210     


Q ss_pred             ccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccc
Q psy15912        318 KENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLV  397 (482)
Q Consensus       318 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (482)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (432)
T COG4109         247 --------------------------------------------------------------------------------  246 (432)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhcc
Q psy15912        398 VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHG  468 (482)
Q Consensus       398 ~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~~  468 (482)
                             ++.++..+|+++|+++.+.+++..+.+.|.--++.-+||+|++++++|||||+|+++....-.+
T Consensus       247 -------~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~  310 (432)
T COG4109         247 -------PSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQR  310 (432)
T ss_pred             -------CCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence                   1237889999999999999999999999999999999999999999999999999998654433

>PRK03655 putative ion channel protein; Provisional

Probab=99.52  E-value=4.3e-14  Score=147.89  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=95.7

Q ss_pred             HHhccccccCCCchhhhhhhcc-cccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy15912         57 VWTYGVSVSGGGMPEKYDFLSK-DNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEAT  128 (482)
Q Consensus        57 ~~~~~~~~~g~G~~~~~~~l~~-~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~  128 (482)
                      .+.++-.+.|.||+.++..+.+ +..+..     +.|+  |++|++||.+||+|.|+|++||++|..++.+    +|.  
T Consensus       272 ~l~~~~~~~g~Gy~~i~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l----~p~--  345 (414)
T PRK03655        272 GVIGGPLTLFKGLDEMQQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH----VPA--  345 (414)
T ss_pred             HHHhCCccccCCHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh----ccC--
Confidence            3444445699999999988865 555543     3666  9999999999999999999999999888865    443  


Q ss_pred             CCchhHHHHHHHHHHhhhhhc----hhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhh
Q psy15912        129 WIDPGKYALIGAAAQLGGVVR----MTISLTIILIEATGNISFGLPLMLTLITAKWIGD  183 (482)
Q Consensus       129 ~~~~~~~a~vG~aa~~~g~~~----~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~  183 (482)
                       .++....++||++++++++|    +|+++++++.|||     ++|+|++++++-|+.-
T Consensus       346 -~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~~  398 (414)
T PRK03655        346 -VPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLLL  398 (414)
T ss_pred             -CChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHHH
Confidence             46777889999999999999    6999999999999     8999999988777654

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.52  E-value=1.3e-13  Score=121.75  Aligned_cols=122  Identities=20%  Similarity=0.440  Sum_probs=104.8

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ..++++++|++|++.++|++++.+++++|++++++.+||++++                                     
T Consensus        63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~-------------------------------------  105 (187)
T COG3620          63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED-------------------------------------  105 (187)
T ss_pred             ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCC-------------------------------------
Confidence            4789999999999999999999999999999999999999874                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                             +++|.|+..++.+++....                                                      
T Consensus       106 -------k~VGsItE~~iv~~~le~~------------------------------------------------------  124 (187)
T COG3620         106 -------KVVGSITENDIVRALLEGM------------------------------------------------------  124 (187)
T ss_pred             -------eeeeeecHHHHHHHHhccc------------------------------------------------------
Confidence                   9999999999988764430                                                      


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                     +...+..++++|..+.++|+++.++..+++++..+.  .+.|+ ++|++
T Consensus       125 -------------------------------e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~  170 (187)
T COG3620         125 -------------------------------ESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKV  170 (187)
T ss_pred             -------------------------------cchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCce
Confidence                                           001234799999999999999999999999987654  57777 68999


Q ss_pred             EEEEeHHHhHHHHH
Q psy15912        451 VGMITRKDLARYRV  464 (482)
Q Consensus       451 vGIITr~DLl~~~~  464 (482)
                      +||||+.|+++...
T Consensus       171 vGIITk~DI~k~~~  184 (187)
T COG3620         171 VGIITKADIMKLLA  184 (187)
T ss_pred             EEEEeHHHHHHHHh
Confidence            99999999998653

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.50  E-value=6.3e-14  Score=148.61  Aligned_cols=124  Identities=23%  Similarity=0.360  Sum_probs=109.5

Q ss_pred             CCccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        208 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       208 ~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      ..+..++++++|.++++++.+++++.++.+.|.++++..+||+|++                                  
T Consensus        84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~----------------------------------  129 (479)
T PRK07807         84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE----------------------------------  129 (479)
T ss_pred             HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC----------------------------------
Confidence            3567888999999999999999999999999999999999999975                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                               ++++|+|+.+|+...   .                                                    
T Consensus       130 ---------gklvGIVT~rDL~~~---~----------------------------------------------------  145 (479)
T PRK07807        130 ---------GRPVGVVTEADCAGV---D----------------------------------------------------  145 (479)
T ss_pred             ---------CeEEEEEeHHHHhcC---c----------------------------------------------------
Confidence                     699999999997311   0                                                    


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                           ...+++++|+++++++++++++.+|+++|.+.+.+++||||++
T Consensus       146 -------------------------------------~~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~  188 (479)
T PRK07807        146 -------------------------------------RFTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD  188 (479)
T ss_pred             -------------------------------------cCCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC
Confidence                                                 0015889999999999999999999999999999999999988


Q ss_pred             CeEEEEEeHHHhHHHHHhh
Q psy15912        448 NHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~~~  466 (482)
                      |+++|+||++|+++...+.
T Consensus       189 g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        189 GRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             CeEEEEEEHHHHHHHhhCC
Confidence            9999999999999976554

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.6e-13  Score=116.02  Aligned_cols=120  Identities=23%  Similarity=0.364  Sum_probs=93.8

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      +++.++.+++++.++++.|.+++.+.+||+|++                                           ++++
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-------------------------------------------~~~~   37 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDEN-------------------------------------------GKVV   37 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-------------------------------------------CeEE
Confidence            357889999999999999999999999999875                                           6899


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++.+|+..+........    +.                                                    .. 
T Consensus        38 Giv~~~dl~~~~~~~~~~~----~~----------------------------------------------------~~-   60 (120)
T cd04641          38 DVYSRFDVINLAKEGAYNN----LD----------------------------------------------------LT-   60 (120)
T ss_pred             EEEeHHHHHHHHhcCcccc----cc----------------------------------------------------CC-
Confidence            9999999986543220000    00                                                    00 


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                                            ....+...+.|..+++++++++++.++++.|.+.+.+++||+|++|+++|+||++|++
T Consensus        61 ----------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~  118 (120)
T cd04641          61 ----------------------VGEALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL  118 (120)
T ss_pred             ----------------------HHHHHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence                                  0000123345667788999999999999999999999999999889999999999998


Q ss_pred             HH
Q psy15912        461 RY  462 (482)
Q Consensus       461 ~~  462 (482)
                      ++
T Consensus       119 ~~  120 (120)
T cd04641         119 QF  120 (120)
T ss_pred             cC
Confidence            64

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4.4e-13  Score=114.54  Aligned_cols=111  Identities=16%  Similarity=0.284  Sum_probs=94.6

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912        223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL  302 (482)
Q Consensus       223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi  302 (482)
                      +.+++++.++.++.+.|.+.++..+||+|++                                           ++++|+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------------------------------------g~~~G~   39 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------------------------------------GKLAGV   39 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------------------------------------CCEEEE
Confidence            5688999999999999999999999999876                                           689999


Q ss_pred             EeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhh
Q psy15912        303 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEI  382 (482)
Q Consensus       303 Is~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                      ++.+|+.+.......                                                                 
T Consensus        40 vt~~dl~~~~~~~~~-----------------------------------------------------------------   54 (114)
T cd04619          40 LTKTDVVRQMGRCGG-----------------------------------------------------------------   54 (114)
T ss_pred             EehHHHHHHHhhcCC-----------------------------------------------------------------
Confidence            999998765432100                                                                 


Q ss_pred             hhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        383 FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                          .....+++++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus        55 --------------------~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          55 --------------------PGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             --------------------CcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence                                00112678889999999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.49  E-value=4.5e-13  Score=114.06  Aligned_cols=54  Identities=22%  Similarity=0.299  Sum_probs=50.6

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|...+.++++++++.+++++|.+.+.+++||+|++|+++|+||++|+++
T Consensus        57 ~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          57 KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            577889888999999999999999999999999999998899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.46  E-value=1.6e-11  Score=128.60  Aligned_cols=123  Identities=15%  Similarity=0.259  Sum_probs=106.3

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...+|+|+|++  ++++++.+++++++.+.+.+++|+.+||++++                                  
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----------------------------------  233 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----------------------------------  233 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------------------------------
Confidence            668899999997  89999999999999999999999999999875                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              .++++|+++.+|++..+...                                                    
T Consensus       234 --------~d~ivGiv~~kDll~~~~~~----------------------------------------------------  253 (408)
T TIGR03520       234 --------IDNITGVLYIKDLLPHLNKK----------------------------------------------------  253 (408)
T ss_pred             --------CCceEEEEEHHHHHhHhccC----------------------------------------------------
Confidence                    25899999999986432110                                                    


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                            ..+++++|. +|++|++++++.++++.|++.+.+..+|+|+.
T Consensus       254 --------------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~  294 (408)
T TIGR03520       254 --------------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY  294 (408)
T ss_pred             --------------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC
Confidence                                                  014667775 57899999999999999999999999999999


Q ss_pred             CeEEEEEeHHHhHHHHHh
Q psy15912        448 NHVVGMITRKDLARYRVW  465 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~~  465 (482)
                      |.++||||.+|+++...-
T Consensus       295 G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       295 GGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             CCEEEEEEHHHHHHHHhC
Confidence            999999999999998653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=6.5e-13  Score=111.15  Aligned_cols=45  Identities=13%  Similarity=0.167  Sum_probs=42.7

Q ss_pred             ceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHH
Q psy15912        417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLAR  461 (482)
Q Consensus       417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~  461 (482)
                      +.++++++++.++.++|.+.+.+++||+|++ |+++|+||++|++.
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            7789999999999999999999999999987 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.44  E-value=1.1e-12  Score=113.16  Aligned_cols=122  Identities=21%  Similarity=0.360  Sum_probs=97.3

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      +++.++.+++++.++.+.|.+.+++.+||+|++                                           ++++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~   38 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-------------------------------------------RRLV   38 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-------------------------------------------CCEE
Confidence            567889999999999999999899999999875                                           6899


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++.+++...+.......                                                           ..
T Consensus        39 Giv~~~~l~~~~~~~~~~~-----------------------------------------------------------~~   59 (124)
T cd04600          39 GIVTQRDLLRHARPDGRRP-----------------------------------------------------------LR   59 (124)
T ss_pred             EEEEHHHHHhhhcccccch-----------------------------------------------------------hh
Confidence            9999999976543210000                                                           00


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                      ..+ +                ......++.++|++.++++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++
T Consensus        60 ~~~-~----------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~  122 (124)
T cd04600          60 GRL-R----------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI  122 (124)
T ss_pred             hhh-h----------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence            000 0                00122368899999999999999999999999999999999999899999999999998


Q ss_pred             H
Q psy15912        461 R  461 (482)
Q Consensus       461 ~  461 (482)
                      +
T Consensus       123 ~  123 (124)
T cd04600         123 A  123 (124)
T ss_pred             c
Confidence            5

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.44  E-value=9.4e-13  Score=111.16  Aligned_cols=106  Identities=25%  Similarity=0.423  Sum_probs=92.7

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      .++.++.++++++++.+.+.+++++.+||+|++                                           ++++
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~   38 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-------------------------------------------NKVV   38 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-------------------------------------------CeEE
Confidence            367889999999999999999888999999875                                           6999


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++..++....  .                                                                 
T Consensus        39 G~v~~~~l~~~~--~-----------------------------------------------------------------   51 (108)
T cd04596          39 GIVTSKDVAGKD--P-----------------------------------------------------------------   51 (108)
T ss_pred             EEecHHHHhccc--c-----------------------------------------------------------------
Confidence            999999985210  0                                                                 


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                                               ..+++++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|++
T Consensus        52 -------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~  106 (108)
T cd04596          52 -------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL  106 (108)
T ss_pred             -------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence                                     0157788988899999999999999999999999999999899999999999997


Q ss_pred             H
Q psy15912        461 R  461 (482)
Q Consensus       461 ~  461 (482)
                      +
T Consensus       107 ~  107 (108)
T cd04596         107 K  107 (108)
T ss_pred             c
Confidence            5

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.43  E-value=7.3e-13  Score=115.53  Aligned_cols=113  Identities=16%  Similarity=0.301  Sum_probs=94.4

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      +++.++++++++.++++.|+++++..+||+|++                                           ++++
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-------------------------------------------~~~~   38 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-------------------------------------------GKIL   38 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEE
Confidence            467889999999999999999999999999875                                           5899


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++.+++...+....                                                                
T Consensus        39 Gii~~~dl~~~~~~~~----------------------------------------------------------------   54 (124)
T cd04608          39 GMVTLGNLLSSLSSGK----------------------------------------------------------------   54 (124)
T ss_pred             EEEEHHHHHHHHHHhc----------------------------------------------------------------
Confidence            9999999876553320                                                                


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHH---------HcCCCEEEEECCCCeEE
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFR---------ALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~---------~~~lr~lpVVD~~g~lv  451 (482)
                                            .....+++++|++++.++.+++++.++.+++.         +.+.+++||+|++|+++
T Consensus        55 ----------------------~~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  112 (124)
T cd04608          55 ----------------------VQPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPI  112 (124)
T ss_pred             ----------------------cCCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceE
Confidence                                  00123799999999999999999999999653         23678999999889999


Q ss_pred             EEEeHHHhHHH
Q psy15912        452 GMITRKDLARY  462 (482)
Q Consensus       452 GIITr~DLl~~  462 (482)
                      ||||+.|++++
T Consensus       113 Givt~~Dl~~~  123 (124)
T cd04608         113 GIVTKIDLLSY  123 (124)
T ss_pred             EEEehhHhhhh
Confidence            99999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2e-12  Score=111.17  Aligned_cols=111  Identities=21%  Similarity=0.258  Sum_probs=92.9

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++++++++.++++.|...+.+.+||+|++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-------------------------------------------GDLVG   38 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------------------------------------CCEEE
Confidence            56889999999999999988888999999975                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..|+.+......                                                                 
T Consensus        39 ivt~~dl~~~~~~~~-----------------------------------------------------------------   53 (118)
T cd04617          39 VVSRKDLLKASIGGA-----------------------------------------------------------------   53 (118)
T ss_pred             EEEHHHHHHHHHcCC-----------------------------------------------------------------
Confidence            999999877543210                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCcccccccccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC---CeEEEEEeH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN---NHVVGMITR  456 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~---g~lvGIITr  456 (482)
                                           .....+++++|.+  .+.++++++++.+++++|.+.+.+++||+|++   |+++|+||+
T Consensus        54 ---------------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~  112 (118)
T cd04617          54 ---------------------DLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITK  112 (118)
T ss_pred             ---------------------CccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEh
Confidence                                 0001256778875  67899999999999999999999999999877   699999999


Q ss_pred             HHhHH
Q psy15912        457 KDLAR  461 (482)
Q Consensus       457 ~DLl~  461 (482)
                      +|+++
T Consensus       113 ~~l~~  117 (118)
T cd04617         113 TNITK  117 (118)
T ss_pred             hheec
Confidence            99975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2e-12  Score=109.28  Aligned_cols=110  Identities=29%  Similarity=0.430  Sum_probs=93.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.+++++.++.++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------------------------------------GHLVG   38 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------------------------------------CcEEE
Confidence            46778999999999999988888999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..++.+.+....                                                                 
T Consensus        39 ~v~~~~l~~~~~~~~-----------------------------------------------------------------   53 (111)
T cd04639          39 LLTRDDLIRALAEGG-----------------------------------------------------------------   53 (111)
T ss_pred             EeeHHHHHHHHHhcC-----------------------------------------------------------------
Confidence            999999876543210                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                             ...++.++|...+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+.+
T Consensus        54 -----------------------~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          54 -----------------------PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             -----------------------CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                                   001577888888999999999999999999999999999998799999999999986


Q ss_pred             H
Q psy15912        462 Y  462 (482)
Q Consensus       462 ~  462 (482)
                      +
T Consensus       111 ~  111 (111)
T cd04639         111 L  111 (111)
T ss_pred             C
Confidence            3

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=2.2e-12  Score=109.17  Aligned_cols=111  Identities=24%  Similarity=0.412  Sum_probs=95.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++++.|++.++..+||+|++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~G   38 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-------------------------------------------GRLVG   38 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-------------------------------------------CCEEE
Confidence            56789999999999999999999999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..|+...+.+..                                                                 
T Consensus        39 ~v~~~~l~~~~~~~~-----------------------------------------------------------------   53 (114)
T cd04613          39 IVSLDDIREILFDPS-----------------------------------------------------------------   53 (114)
T ss_pred             EEEHHHHHHHHhccc-----------------------------------------------------------------
Confidence            999999976543210                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHhH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLA  460 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g~lvGIITr~DLl  460 (482)
                                           .....++.++|++++.++++++++.++++.|.+.+.+++||+|+ +++++|++|++|++
T Consensus        54 ---------------------~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~  112 (114)
T cd04613          54 ---------------------LYDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL  112 (114)
T ss_pred             ---------------------ccccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence                                 00113688899999999999999999999999999999999987 79999999999998


Q ss_pred             H
Q psy15912        461 R  461 (482)
Q Consensus       461 ~  461 (482)
                      .
T Consensus       113 ~  113 (114)
T cd04613         113 S  113 (114)
T ss_pred             c
Confidence            5

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.41  E-value=5.6e-13  Score=145.01  Aligned_cols=202  Identities=17%  Similarity=0.217  Sum_probs=121.9

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      .+++|+|.+++.++++++++.++++.|++++++.+||+|++                                       
T Consensus        68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------------------------  108 (546)
T PRK14869         68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE---------------------------------------  108 (546)
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------------------------
Confidence            68999999999999999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccc-------hhhhhhhccc-------c---------ccccCCCCcc
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQL-------SSEIFHAEYR-------C---------RPRIWSPGRL  349 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~-------~~~~~~~~~~-------~---------~~~~~~~~~~  349 (482)
                          ++++|+|+.+|+.+.+......+....-...+       .++.......       .         ......++.+
T Consensus       109 ----g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~l  184 (546)
T PRK14869        109 ----GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDI  184 (546)
T ss_pred             ----CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCE
Confidence                69999999999998766532110000000000       0000000000       0         0000011111


Q ss_pred             ccchhhHHHHHH-HHhh----hhccCCCCCCC------CCChhhhhhhCCCCCCCCccccCccccccccccccccc-cCc
Q psy15912        350 VGLILRSQLIIL-IKHK----IYKENQNWPDD------QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-TSP  417 (482)
Q Consensus       350 ~G~i~~~~l~~~-~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~~p  417 (482)
                      +=.-.|.++... ++..    ++..+....+.      +.+...+..+++.+...       .......+++++|+ +++
T Consensus       185 vi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~-------~~l~~~~~V~~iM~~~~~  257 (546)
T PRK14869        185 VIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTA-------RLINQSIPVSYIMTTEDL  257 (546)
T ss_pred             EEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHH-------HHhhcCCCHHHhccCCCc
Confidence            111223332221 1111    11111100000      00001111111111111       11344568999999 899


Q ss_pred             eeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       418 ~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++++++++.++.+.|.+.+.+++||||++|+++|+||++|++++..
T Consensus       258 ~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        258 VTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR  304 (546)
T ss_pred             EEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence            99999999999999999999999999999999999999999998654

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.41  E-value=1.6e-12  Score=114.42  Aligned_cols=53  Identities=30%  Similarity=0.478  Sum_probs=50.4

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.++++++.+++++.++.+.|.+.+.+++||+| +|+++|+||++|+++
T Consensus        82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            68899999999999999999999999999999999998 899999999999985

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.41  E-value=4.4e-12  Score=106.61  Aligned_cols=107  Identities=26%  Similarity=0.400  Sum_probs=92.6

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      +++.+++++.++.++.+.|.+.++..+||+|++                                           ++++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~   38 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------------------------------------NKLL   38 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------------------------------------CcEE
Confidence            356778999999999999998889999999875                                           6899


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++..|+.......                                                                 
T Consensus        39 G~v~~~dl~~~~~~~-----------------------------------------------------------------   53 (109)
T cd04583          39 GIVSLESLEQAYKEA-----------------------------------------------------------------   53 (109)
T ss_pred             EEEEHHHHHHHhhcC-----------------------------------------------------------------
Confidence            999999986532110                                                                 


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                                                .++.++|.+.+.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|++
T Consensus        54 --------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~  107 (109)
T cd04583          54 --------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV  107 (109)
T ss_pred             --------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence                                      156778888899999999999999999999999999999889999999999997


Q ss_pred             H
Q psy15912        461 R  461 (482)
Q Consensus       461 ~  461 (482)
                      +
T Consensus       108 ~  108 (109)
T cd04583         108 D  108 (109)
T ss_pred             c
Confidence            4

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.40  E-value=2e-12  Score=129.47  Aligned_cols=125  Identities=18%  Similarity=0.376  Sum_probs=105.5

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...+|+|+|++  ++.+++++.+++++.+.+.+++|+.|||++++                                  
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----------------------------------  109 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------------------------------  109 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------------------------------
Confidence            456799999998  79999999999999999999999999999864                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              .++++|+++.+|++.......                                                   
T Consensus       110 --------~d~iiGiv~~kDll~~~~~~~---------------------------------------------------  130 (292)
T PRK15094        110 --------KDHIEGILMAKDLLPFMRSDA---------------------------------------------------  130 (292)
T ss_pred             --------CCcEEEEEEHHHHHhHhhccC---------------------------------------------------
Confidence                    258999999999975432110                                                   


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                           ...++.++|.+ ++++++++++.++++.|++.+.+.+||+|+.
T Consensus       131 -------------------------------------~~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~  172 (292)
T PRK15094        131 -------------------------------------EAFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF  172 (292)
T ss_pred             -------------------------------------CcCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC
Confidence                                                 00146677865 5689999999999999999999999999998


Q ss_pred             CeEEEEEeHHHhHHHHHh
Q psy15912        448 NHVVGMITRKDLARYRVW  465 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~~  465 (482)
                      |.++|+||++|+++...-
T Consensus       173 G~viGiVTleDIle~ivG  190 (292)
T PRK15094        173 GGVSGLVTIEDILELIVG  190 (292)
T ss_pred             CCEEEEeEHHHHHHHHhC
Confidence            999999999999997653

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.8e-12  Score=107.85  Aligned_cols=112  Identities=17%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++++.|++.+++.+||+|++                                          +++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------------------------------------~~~~~G   39 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------------------------------------ESDAYG   39 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------------------------------------CCcEEE
Confidence            56789999999999999998889999999864                                          158999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+|+.+.+.....                                                                
T Consensus        40 ~v~~~dl~~~~~~~~~----------------------------------------------------------------   55 (114)
T cd04630          40 IVTMRDILKKVVAEGR----------------------------------------------------------------   55 (114)
T ss_pred             EEehHHHHHHHHhCCC----------------------------------------------------------------
Confidence            9999999875533200                                                                


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                           .....++.++|.++++++++++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus        56 ---------------------~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          56 ---------------------DPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             ---------------------CCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                                 00112677889888999999999999999999999999999986 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3e-12  Score=110.08  Aligned_cols=121  Identities=21%  Similarity=0.377  Sum_probs=96.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++.+.|.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-------------------------------------------GKLVG   38 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-------------------------------------------CCEEE
Confidence            56788999999999999999999999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..++...+........                             .+                              
T Consensus        39 ~v~~~~l~~~~~~~~~~~~-----------------------------~~------------------------------   59 (122)
T cd04803          39 LLTQRDLLRAALSSLSDNG-----------------------------EE------------------------------   59 (122)
T ss_pred             EEEHHHHHHHhcccccccc-----------------------------cc------------------------------
Confidence            9999999775532210000                             00                              


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                       ..                 ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||+.|+++
T Consensus        60 -~~-----------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          60 -SL-----------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             -cc-----------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence             00                 001223788899999999999999999999999999999999998899999999999986


Q ss_pred             H
Q psy15912        462 Y  462 (482)
Q Consensus       462 ~  462 (482)
                      |
T Consensus       122 ~  122 (122)
T cd04803         122 L  122 (122)
T ss_pred             C
Confidence            4

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.40  E-value=4.3e-12  Score=108.23  Aligned_cols=111  Identities=20%  Similarity=0.340  Sum_probs=94.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++.+.|.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-------------------------------------------GGVVG   38 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-------------------------------------------CCEEE
Confidence            45678999999999999999899999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+|+...+.+..                                                                 
T Consensus        39 ~v~~~dl~~~~~~~~-----------------------------------------------------------------   53 (115)
T cd04593          39 IITLPDLLRALEADE-----------------------------------------------------------------   53 (115)
T ss_pred             EEEHHHHHHHHhccc-----------------------------------------------------------------
Confidence            999999976553210                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC--CeEEEEEeHHHh
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN--NHVVGMITRKDL  459 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~--g~lvGIITr~DL  459 (482)
                                           .....+++++|.+++.++++++++.+++++|.+.+.+++||+|++  |+++|+||++|+
T Consensus        54 ---------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di  112 (115)
T cd04593          54 ---------------------AGEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENV  112 (115)
T ss_pred             ---------------------ccccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHh
Confidence                                 000114778898999999999999999999999999999999887  799999999999


Q ss_pred             HH
Q psy15912        460 AR  461 (482)
Q Consensus       460 l~  461 (482)
                      ++
T Consensus       113 ~~  114 (115)
T cd04593         113 LL  114 (115)
T ss_pred             hc
Confidence            85

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.40  E-value=1.2e-12  Score=139.67  Aligned_cols=149  Identities=17%  Similarity=0.238  Sum_probs=111.5

Q ss_pred             ChhHHHHHHcCCCCCCCCCC---CCccccchhhccc---CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCC
Q psy15912        188 GLYDIHIQLSGIPLLAWDPP---PLSSNITARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSD  261 (482)
Q Consensus       188 siy~~~L~~~g~p~l~~~~~---~~l~~l~a~dvM~---~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~  261 (482)
                      .+--.+.+.+|+.+.+....   ..-.-.+++++|.   ....++++++++.++++.|.++++..+||+|++.       
T Consensus        66 alAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~-------  138 (502)
T PRK07107         66 NMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT-------  138 (502)
T ss_pred             HHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC-------
Confidence            33445556666665432110   0111235777775   3456899999999999999999999999999631       


Q ss_pred             CccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhcccccc
Q psy15912        262 GAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRP  341 (482)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  341 (482)
                                                       .+++++|+|+..|+....  .                          
T Consensus       139 ---------------------------------~~gkLvGIVT~~DLr~~~--~--------------------------  157 (502)
T PRK07107        139 ---------------------------------AHGKLLGIVTSRDYRISR--M--------------------------  157 (502)
T ss_pred             ---------------------------------cCCEEEEEEEcHHhhccc--c--------------------------
Confidence                                             026999999999974210  0                          


Q ss_pred             ccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc--Ccee
Q psy15912        342 RIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFS  419 (482)
Q Consensus       342 ~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~  419 (482)
                                                                                    ....+++++|++  ++++
T Consensus       158 --------------------------------------------------------------~~~~~V~dIMt~~~~~it  175 (502)
T PRK07107        158 --------------------------------------------------------------SLDTKVKDFMTPFEKLVT  175 (502)
T ss_pred             --------------------------------------------------------------CCCCCHHHHhCCCCCeEE
Confidence                                                                          011268899986  6788


Q ss_pred             eeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        420 VQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       420 V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      +++++++.+|+++|.+.+++++||||++|+++|+||++|+++...+.
T Consensus       176 v~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P  222 (502)
T PRK07107        176 ANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENP  222 (502)
T ss_pred             ECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccCh
Confidence            99999999999999999999999999889999999999999876443

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.6e-12  Score=110.14  Aligned_cols=124  Identities=16%  Similarity=0.303  Sum_probs=96.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.+++++.++.++++.|.+.+++.+||+|++                                          +++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------------------------------------~~~~~G   39 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------------------------------------TGKLVG   39 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------------------------------------CCEEEE
Confidence            56788999999999999999999999999874                                          269999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..|+...+......+.  .+                                                     ..  
T Consensus        40 ~v~~~dl~~~~~~~~~~~~--~~-----------------------------------------------------~~--   62 (125)
T cd04631          40 IITATDILKYLGGGEKFNK--IK-----------------------------------------------------TG--   62 (125)
T ss_pred             EEEHHHHHHHhhccchhcc--cc-----------------------------------------------------cc--
Confidence            9999999876543210000  00                                                     00  


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                         .               .......++.++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        63 ---~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          63 ---N---------------GLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             ---c---------------cchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence               0               0000123677888889999999999999999999999999999987799999999999986


Q ss_pred             H
Q psy15912        462 Y  462 (482)
Q Consensus       462 ~  462 (482)
                      +
T Consensus       125 ~  125 (125)
T cd04631         125 A  125 (125)
T ss_pred             C
Confidence            4

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=6.4e-12  Score=106.15  Aligned_cols=111  Identities=21%  Similarity=0.378  Sum_probs=93.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.++.++.++.+.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------------------------------------GRLVG   38 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------------------------------------CCEEE
Confidence            56788999999999999999999999999875                                           58999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..++...+.....                                                                
T Consensus        39 iv~~~~l~~~~~~~~~----------------------------------------------------------------   54 (113)
T cd04623          39 IFSERDIVRKVALRGA----------------------------------------------------------------   54 (113)
T ss_pred             EEehHHHHHHHhhcCC----------------------------------------------------------------
Confidence            9999999775532100                                                                


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                           .....++.++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus        55 ---------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          55 ---------------------SALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ---------------------CccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence                                 00012578889888999999999999999999999999999986 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.39  E-value=5e-12  Score=105.96  Aligned_cols=54  Identities=19%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             cccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        409 LNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       409 v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +.++|.+.+.++.+++++.++++.|.+.+...+||+|++|+++|+||++|++++
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~~  106 (106)
T cd04582          53 CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIADY  106 (106)
T ss_pred             hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            556787778889999999999999999999999999988999999999999853

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.3e-12  Score=111.27  Aligned_cols=54  Identities=24%  Similarity=0.497  Sum_probs=50.7

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++.++|.++++++.+++++.++.++|.+.+.+.+||+|+ |+++|+||++|+++|
T Consensus        79 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~  132 (132)
T cd04636          79 KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS  132 (132)
T ss_pred             CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence            688889999999999999999999999999999999987 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.38  E-value=8.4e-12  Score=105.31  Aligned_cols=108  Identities=19%  Similarity=0.373  Sum_probs=93.6

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      +++.++.++.++.++++.+.++++..+||+|++                                           |+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~   38 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-------------------------------------------GRLV   38 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-------------------------------------------CcEE
Confidence            567789999999999999998889999999875                                           6999


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++.+++...+....                                                                
T Consensus        39 G~v~~~~l~~~~~~~~----------------------------------------------------------------   54 (110)
T cd04605          39 GIVTSWDISKAVARDK----------------------------------------------------------------   54 (110)
T ss_pred             EEEeHHHHHHHHhhCc----------------------------------------------------------------
Confidence            9999999875442210                                                                


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                                                .++.++|.+++.+++++++++++++.|.+.+.+.+||+|++|+++|+||++|++
T Consensus        55 --------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~  108 (110)
T cd04605          55 --------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS  108 (110)
T ss_pred             --------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence                                      146677888899999999999999999999999999999889999999999996


Q ss_pred             H
Q psy15912        461 R  461 (482)
Q Consensus       461 ~  461 (482)
                      +
T Consensus       109 ~  109 (110)
T cd04605         109 K  109 (110)
T ss_pred             h
Confidence            4

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.38  E-value=6.9e-12  Score=106.60  Aligned_cols=109  Identities=20%  Similarity=0.365  Sum_probs=92.7

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912        223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL  302 (482)
Q Consensus       223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi  302 (482)
                      ..++.++.++.++.+.|.+.++..+||+|++                                           ++++|+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G~   40 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------------------------------------GRLLGT   40 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------------------------------------CCEEEE
Confidence            4578899999999999998888899999875                                           689999


Q ss_pred             EeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhh
Q psy15912        303 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEI  382 (482)
Q Consensus       303 Is~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                      ++.+|+.+.+....                                                                  
T Consensus        41 v~~~dl~~~~~~~~------------------------------------------------------------------   54 (113)
T cd04607          41 VTDGDIRRALLKGL------------------------------------------------------------------   54 (113)
T ss_pred             EEcHHHHHHHhcCC------------------------------------------------------------------
Confidence            99999876543210                                                                  


Q ss_pred             hhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        383 FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                           ....++.++|.+.+.++++++++.++++.|.+.+.+++||+|++|+++|+||++|++.
T Consensus        55 ---------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          55 ---------------------SLDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             ---------------------CcCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence                                 0011577889888999999999999999999999999999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=8.7e-12  Score=105.57  Aligned_cols=110  Identities=21%  Similarity=0.424  Sum_probs=93.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.+++++.++.++.+.+...+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G   38 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------------------------------------ERPIG   38 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CCEEE
Confidence            46688999999999999988889999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..++.+.+....                                                                 
T Consensus        39 ~v~~~~l~~~~~~~~-----------------------------------------------------------------   53 (112)
T cd04624          39 IVTERDIVRAVAAGI-----------------------------------------------------------------   53 (112)
T ss_pred             EeeHHHHHHHHhccC-----------------------------------------------------------------
Confidence            999999976553320                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            ....++.++|++++.++++++++.++.+.|.+.+...+||+|++|+++|++|++|+++
T Consensus        54 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          54 ----------------------DLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             ----------------------CCccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence                                  0011567888889999999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=4.8e-12  Score=108.85  Aligned_cols=54  Identities=24%  Similarity=0.466  Sum_probs=50.9

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|++|++|+++
T Consensus        68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          68 TVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            577889889999999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.37  E-value=5.8e-12  Score=107.23  Aligned_cols=54  Identities=33%  Similarity=0.527  Sum_probs=47.7

Q ss_pred             ccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++++|.+.  ++++.+++++.++++.|++.+.+++||+|++|+++|+||.+|+++
T Consensus        58 ~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          58 TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            466777642  568999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=9.5e-12  Score=105.48  Aligned_cols=110  Identities=19%  Similarity=0.341  Sum_probs=92.9

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912        223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL  302 (482)
Q Consensus       223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi  302 (482)
                      +.++.+++++.++++.+.+.+++.+||+|++                                           ++++|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------------------------------------~~~~G~   39 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-------------------------------------------KRLVGI   39 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-------------------------------------------CCEEEE
Confidence            5678999999999999999888999999875                                           689999


Q ss_pred             EeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhh
Q psy15912        303 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEI  382 (482)
Q Consensus       303 Is~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  382 (482)
                      ++..|+.+......                                                                  
T Consensus        40 v~~~dl~~~~~~~~------------------------------------------------------------------   53 (113)
T cd04615          40 ITRYDVLSYALESE------------------------------------------------------------------   53 (113)
T ss_pred             EEHHHHHHhhhhhh------------------------------------------------------------------
Confidence            99999876432210                                                                  


Q ss_pred             hhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        383 FHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                          .....++.++|.+++.++++++++.++.+.|.+.+...+||+|++|+++|+||++|+++
T Consensus        54 --------------------~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          54 --------------------ELKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             --------------------hhcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence                                00012577889889999999999999999999999999999998899999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.37  E-value=2.9e-12  Score=135.93  Aligned_cols=121  Identities=19%  Similarity=0.292  Sum_probs=105.9

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      +..+++.++|.++++++.+++++.++.+.|++..++.+||+|+                                     
T Consensus        85 v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-------------------------------------  127 (475)
T TIGR01303        85 VAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-------------------------------------  127 (475)
T ss_pred             HhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-------------------------------------
Confidence            5577888999999999999999999999999988888888875                                     


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                             ++++|+|+.+|+...   .                                                      
T Consensus       128 -------gklvGIVT~rDL~~~---~------------------------------------------------------  143 (475)
T TIGR01303       128 -------DRPVGLVTDSDLLGV---D------------------------------------------------------  143 (475)
T ss_pred             -------CEEEEEEEHHHhhcC---C------------------------------------------------------
Confidence                   489999999997311   0                                                      


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                         ...+++++|+++++++++++++.++.++|.+.+.+++||||++|+
T Consensus       144 -----------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~  188 (475)
T TIGR01303       144 -----------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGT  188 (475)
T ss_pred             -----------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence                                               001688999999999999999999999999999999999998999


Q ss_pred             EEEEEeHHHhHHHHHhh
Q psy15912        450 VVGMITRKDLARYRVWR  466 (482)
Q Consensus       450 lvGIITr~DLl~~~~~~  466 (482)
                      ++|+||++||++...+.
T Consensus       189 LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       189 LAGILTRTGALRATIYT  205 (475)
T ss_pred             EEEEEEHHHHHHHHhCC
Confidence            99999999999976654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.36  E-value=6.7e-12  Score=133.53  Aligned_cols=146  Identities=18%  Similarity=0.273  Sum_probs=114.2

Q ss_pred             cCCChhHHHHHHcCCCCCCC-CCCCCccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCc
Q psy15912        185 FTEGLYDIHIQLSGIPLLAW-DPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGA  263 (482)
Q Consensus       185 ~~~siy~~~L~~~g~p~l~~-~~~~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~  263 (482)
                      +..-+++.|++.+++..... .....+.+++++|+|.+++.++.+++++.++++.|++.++..+||+|++          
T Consensus       306 ~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~----------  375 (454)
T TIGR01137       306 MTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA----------  375 (454)
T ss_pred             cCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------
Confidence            33444567888887643221 1224588899999999999999999999999999998889999999875          


Q ss_pred             cccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhcccccccc
Q psy15912        264 EQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRI  343 (482)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  343 (482)
                                                       ++++|+|+.+|+.+.+....                           
T Consensus       376 ---------------------------------~~~~Givt~~dl~~~~~~~~---------------------------  395 (454)
T TIGR01137       376 ---------------------------------GKVLGSVTLRELLSALFAGK---------------------------  395 (454)
T ss_pred             ---------------------------------CeEEEEEEHHHHHHHHhccC---------------------------
Confidence                                             68999999999877543210                           


Q ss_pred             CCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCC
Q psy15912        344 WSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDS  423 (482)
Q Consensus       344 ~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~  423 (482)
                                                                                 .....++.++|++++.+++++
T Consensus       396 -----------------------------------------------------------~~~~~~v~~im~~~~~~v~~~  416 (454)
T TIGR01137       396 -----------------------------------------------------------ANPDDAVSKVMSKKFIQIGEG  416 (454)
T ss_pred             -----------------------------------------------------------CCcCCCHHHhcCCCCeEECCc
Confidence                                                                       000125788899999999999


Q ss_pred             CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        424 TSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       424 ~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++.++.++|.+.+   .|||+++|+++|+||++|++++
T Consensus       417 ~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       417 EKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             CcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence            99999999998754   3555567999999999999975

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=7.3e-12  Score=106.26  Aligned_cols=112  Identities=22%  Similarity=0.342  Sum_probs=93.4

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.+++++.++.++.+.|.+++...+||+|++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------------------------------------~~~~G   38 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-------------------------------------------GNLVG   38 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-------------------------------------------CeEEE
Confidence            46788999999999999988888899999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..++.+.+....+.                                                  .            
T Consensus        39 ~v~~~~l~~~~~~~~~~--------------------------------------------------~------------   56 (114)
T cd04629          39 FLSEQDCLKQLLESSYH--------------------------------------------------C------------   56 (114)
T ss_pred             EeehHHHHHHhhhhhhc--------------------------------------------------c------------
Confidence            99999988655332000                                                  0            


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            ....++.++|++.++++++++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus        57 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          57 ----------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             ----------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence                                  0012678889889999999999999999999999999999986 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.36  E-value=3.2e-12  Score=135.68  Aligned_cols=124  Identities=21%  Similarity=0.256  Sum_probs=104.4

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHh-----CCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKA-----TSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDS  284 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~-----~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (482)
                      +..-+|+++|++++++++++.+++++++.+++     .....+||+|++                               
T Consensus       128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-------------------------------  176 (449)
T TIGR00400       128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-------------------------------  176 (449)
T ss_pred             CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-------------------------------
Confidence            34568999999999999999999999999985     233567888875                               


Q ss_pred             CCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHh
Q psy15912        285 SHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKH  364 (482)
Q Consensus       285 ~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~  364 (482)
                                  ++++|+++.+|+...  ..                                                 
T Consensus       177 ------------~~l~GvV~l~dLl~a--~~-------------------------------------------------  193 (449)
T TIGR00400       177 ------------KHLKGVLSIRDLILA--KP-------------------------------------------------  193 (449)
T ss_pred             ------------CeEEEEEEHHHHhcC--CC-------------------------------------------------
Confidence                        689999999997421  00                                                 


Q ss_pred             hhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEE
Q psy15912        365 KIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVV  444 (482)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVV  444 (482)
                                                               ..+++++|+++++++++++++.++.+.|++.++..+|||
T Consensus       194 -----------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVV  232 (449)
T TIGR00400       194 -----------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVV  232 (449)
T ss_pred             -----------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEE
Confidence                                                     016889999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHhHHHHHhhcc
Q psy15912        445 NNNNHVVGMITRKDLARYRVWRHG  468 (482)
Q Consensus       445 D~~g~lvGIITr~DLl~~~~~~~~  468 (482)
                      |++|+++|+||.+|+++....+..
T Consensus       233 D~~g~lvGiIt~~Dil~~l~~~~~  256 (449)
T TIGR00400       233 DNEGRLVGIVTVDDIIDVIQSEAT  256 (449)
T ss_pred             cCCCeEEEEEEHHHHHHHHHhhhH
Confidence            999999999999999987655443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.36  E-value=1.3e-11  Score=104.23  Aligned_cols=108  Identities=31%  Similarity=0.504  Sum_probs=93.0

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      +++.++.++.++.++.+.+++.++..+||+|+                                            ++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------------------------------------~~~~   37 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------------------------------------GRVV   37 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------------------------------------CEEE
Confidence            46788999999999999999888899999986                                            3899


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++.+|+.+......                                                                
T Consensus        38 G~v~~~dl~~~~~~~~----------------------------------------------------------------   53 (110)
T cd04595          38 GIISRRDVEKALRHGL----------------------------------------------------------------   53 (110)
T ss_pred             EEEEHHHHHHHHhccc----------------------------------------------------------------
Confidence            9999999876542210                                                                


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                                              ...++.++|.+.++++++++++.+++++|.+.+.+++||+| +|+++|+||++|++
T Consensus        54 ------------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~  108 (110)
T cd04595          54 ------------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLL  108 (110)
T ss_pred             ------------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhh
Confidence                                    01257788989999999999999999999999999999998 88999999999997


Q ss_pred             H
Q psy15912        461 R  461 (482)
Q Consensus       461 ~  461 (482)
                      +
T Consensus       109 ~  109 (110)
T cd04595         109 R  109 (110)
T ss_pred             c
Confidence            5

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.4e-11  Score=106.51  Aligned_cols=120  Identities=16%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++++.|.+.++..+||+|++                                          +++++|
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~------------------------------------------~~~~~G   39 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE------------------------------------------SGEVIG   39 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCC------------------------------------------CCcEEE
Confidence            56789999999999999998889999999974                                          258999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+|+.+.+........                                                     .     . 
T Consensus        40 iv~~~dl~~~~~~~~~~~~-----------------------------------------------------~-----~-   60 (123)
T cd04627          40 ILSQRRLVEFLWENARSFP-----------------------------------------------------G-----L-   60 (123)
T ss_pred             EEEHHHHHHHHHHhHHhcc-----------------------------------------------------c-----h-
Confidence            9999999876533210000                                                     0     0 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                         +..               ......+.++|.+++.++++++++.+|++.|.+.+.+++||+|++|+++|+||+.|+-
T Consensus        61 ---~~~---------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          61 ---DPL---------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             ---hhh---------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence               000               0001134457888899999999999999999999999999999889999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.35  E-value=4.8e-12  Score=134.18  Aligned_cols=123  Identities=21%  Similarity=0.384  Sum_probs=104.8

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      -++.+++|.+++.++.+++++.++++.|.+++++.+||+|++.                                     
T Consensus        79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~-------------------------------------  121 (450)
T TIGR01302        79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGD-------------------------------------  121 (450)
T ss_pred             hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCC-------------------------------------
Confidence            3466788999999999999999999999999999999998751                                     


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                         ..++++|+|+.+|+.....                                                          
T Consensus       122 ---~~~~lvGIVt~rDL~~~~~----------------------------------------------------------  140 (450)
T TIGR01302       122 ---MTGKLVGIITKRDIRFVKD----------------------------------------------------------  140 (450)
T ss_pred             ---CCCeEEEEEEHHHHhhhhc----------------------------------------------------------
Confidence               0158999999999853210                                                          


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccc-cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                       ...+++++|+ ++++++++++++.++++.|.+.+.+.+||+|++|++
T Consensus       141 ---------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~l  187 (450)
T TIGR01302       141 ---------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGEL  187 (450)
T ss_pred             ---------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence                                             0116888898 489999999999999999999999999999999999


Q ss_pred             EEEEeHHHhHHHHHh
Q psy15912        451 VGMITRKDLARYRVW  465 (482)
Q Consensus       451 vGIITr~DLl~~~~~  465 (482)
                      +|+||++|+++...+
T Consensus       188 vGiVT~~DIl~~~~~  202 (450)
T TIGR01302       188 VGLITMKDIVKRRKF  202 (450)
T ss_pred             EEEEEhHHhhhcccC
Confidence            999999999987544

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.35  E-value=1.2e-11  Score=105.42  Aligned_cols=54  Identities=22%  Similarity=0.359  Sum_probs=49.3

Q ss_pred             ccccccccCceeeeC--CCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQD--STSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~--~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++++|.+.+.++..  ++++.++++.|++.+.+++||+|++|+++|+||++|+++
T Consensus        58 ~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          58 PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            577888888888866  999999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1e-11  Score=105.63  Aligned_cols=115  Identities=23%  Similarity=0.354  Sum_probs=92.0

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++++++++.++++.+++.+.+.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-------------------------------------------~~~~G   38 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-------------------------------------------GKYVG   38 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-------------------------------------------CcEEE
Confidence            57789999999999999999889999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+++.+.+.....                                                            .+..
T Consensus        39 iv~~~dl~~~~~~~~~------------------------------------------------------------~~~~   58 (116)
T cd04643          39 TISLTDILWKLKGLEN------------------------------------------------------------LDLE   58 (116)
T ss_pred             EEeHHHHHHHhhccCc------------------------------------------------------------hhHH
Confidence            9999999765532100                                                            0000


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      .+                     ...+++++|.+.+.++++++++.++++.|.+.+  .+||+|++|+++|+||++|+++
T Consensus        59 ~~---------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          59 RL---------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             HH---------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            00                     012578889999999999999999999998754  5999998899999999999986


Q ss_pred             H
Q psy15912        462 Y  462 (482)
Q Consensus       462 ~  462 (482)
                      +
T Consensus       116 ~  116 (116)
T cd04643         116 A  116 (116)
T ss_pred             C
Confidence            4

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.3e-11  Score=104.44  Aligned_cols=109  Identities=15%  Similarity=0.265  Sum_probs=92.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.+++++.++.++++.+.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G   38 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-------------------------------------------EKLKG   38 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-------------------------------------------CCEEE
Confidence            56788999999999999998899999999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+|+........                                                                 
T Consensus        39 ~v~~~dl~~~~~~~~-----------------------------------------------------------------   53 (111)
T cd04626          39 VVTFTDILDLDLFES-----------------------------------------------------------------   53 (111)
T ss_pred             EEehHHhHHHHhhcc-----------------------------------------------------------------
Confidence            999999875432110                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            ....++.++|.+++.++.+++++.++.+.|.+.+...+||+|+ |+++|+||++|+++
T Consensus        54 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          54 ----------------------FLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             ----------------------cccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence                                  0011577788889999999999999999999999999999986 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.35  E-value=6.5e-12  Score=134.49  Aligned_cols=118  Identities=20%  Similarity=0.374  Sum_probs=103.9

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      .++|+|.++++++.+++++.++++.|.+++++.+||+|++                                        
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~----------------------------------------  127 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN----------------------------------------  127 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC----------------------------------------
Confidence            5789999999999999999999999999999999999965                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                         ++++|+|+.+|+....  .                                                          
T Consensus       128 ---g~lvGiVt~~DL~~~~--~----------------------------------------------------------  144 (486)
T PRK05567        128 ---GKLVGIITNRDVRFET--D----------------------------------------------------------  144 (486)
T ss_pred             ---CEEEEEEEHHHhhhcc--c----------------------------------------------------------
Confidence               6999999999984210  0                                                          


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCccccccccccccccc-cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                     ...++.++|+ ++++++++++++.++.+.|.+.+.+.+||+|++|+++|
T Consensus       145 -------------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvG  193 (486)
T PRK05567        145 -------------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKG  193 (486)
T ss_pred             -------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEE
Confidence                                           0115788898 78899999999999999999999999999999999999


Q ss_pred             EEeHHHhHHHHHh
Q psy15912        453 MITRKDLARYRVW  465 (482)
Q Consensus       453 IITr~DLl~~~~~  465 (482)
                      +||++|+++...+
T Consensus       194 iIT~~DLl~~~~~  206 (486)
T PRK05567        194 LITVKDIEKAEEF  206 (486)
T ss_pred             EEEhHHhhhhhhC
Confidence            9999999987644

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.4e-11  Score=107.20  Aligned_cols=125  Identities=24%  Similarity=0.392  Sum_probs=94.7

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.++.+++++++.|.+.+++.+||+|++                                           ++++|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------------------------------------~~~~G   38 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------------------------------------GKLTG   38 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------------------------------------CcEEE
Confidence            46788999999999999999999999999976                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..|+...+.........                .                         .....             
T Consensus        39 ~it~~dl~~~~~~~~~~~~~----------------~-------------------------~~~~~-------------   64 (128)
T cd04632          39 IVTRHDIVDFVVRDRDKART----------------G-------------------------DRSGE-------------   64 (128)
T ss_pred             EEEHHHHHHHHhhhhhhcch----------------h-------------------------hhhhh-------------
Confidence            99999998754321000000                0                         00000             


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEeHHHh
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN--NNNHVVGMITRKDL  459 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD--~~g~lvGIITr~DL  459 (482)
                         .                ......++.++|+++++++++++++.++.+.|.+.+.+.+||++  ++|+++|+||++|+
T Consensus        65 ---~----------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di  125 (128)
T cd04632          65 ---K----------------ERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDV  125 (128)
T ss_pred             ---h----------------hhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhh
Confidence               0                00011257888999999999999999999999999999999994  46899999999999


Q ss_pred             HHH
Q psy15912        460 ARY  462 (482)
Q Consensus       460 l~~  462 (482)
                      +++
T Consensus       126 ~~~  128 (128)
T cd04632         126 LRA  128 (128)
T ss_pred             hcC
Confidence            863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.34  E-value=7.6e-12  Score=105.30  Aligned_cols=54  Identities=22%  Similarity=0.377  Sum_probs=48.8

Q ss_pred             ccccccccCceeeeC-CCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQD-STSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~-~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|++.+.++.+ ++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        55 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          55 PVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            567788877777777 999999999999999999999998899999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.2e-11  Score=102.83  Aligned_cols=45  Identities=13%  Similarity=0.399  Sum_probs=42.8

Q ss_pred             ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++
T Consensus        51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            778999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.34  E-value=1.4e-11  Score=104.31  Aligned_cols=112  Identities=19%  Similarity=0.299  Sum_probs=94.4

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.+++++.++.++.+.+.+.++..+||+|++                                           ++++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------------------------------------~~~~G   39 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------------------------------------GRLVG   39 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------------------------------------CCEEE
Confidence            45678999999999999988888899999875                                           68999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..++.+.+.....                                                                
T Consensus        40 ~v~~~~i~~~~~~~~~----------------------------------------------------------------   55 (114)
T cd04604          40 IFTDGDLRRALEKGLD----------------------------------------------------------------   55 (114)
T ss_pred             EechHHHHHHHhccCc----------------------------------------------------------------
Confidence            9999998876543200                                                                


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            ....++.++|.+.+.++++++++.++.+.|.+.+...+||+|++|+++|+||++|+++
T Consensus        56 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          56 ----------------------ILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ----------------------cccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence                                  0011578889988999999999999999999999999999998899999999999985


Q ss_pred             H
Q psy15912        462 Y  462 (482)
Q Consensus       462 ~  462 (482)
                      +
T Consensus       114 ~  114 (114)
T cd04604         114 A  114 (114)
T ss_pred             C
Confidence            3

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.33  E-value=1.6e-11  Score=105.05  Aligned_cols=54  Identities=28%  Similarity=0.443  Sum_probs=51.0

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          68 KVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            678889999999999999999999999999999999998899999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.33  E-value=1.4e-11  Score=102.94  Aligned_cols=52  Identities=19%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                      ++.++|.+.+.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++
T Consensus        52 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          52 LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            467788889999999999999999999999999999986 9999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.2e-11  Score=104.79  Aligned_cols=55  Identities=29%  Similarity=0.507  Sum_probs=51.6

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++.++|.++++++++++++.++.+.|.+.+...+||+|++|+++|++|++|+++|
T Consensus        68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~  122 (122)
T cd04637          68 RAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY  122 (122)
T ss_pred             HHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence            5788899999999999999999999999999999999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.2e-11  Score=103.68  Aligned_cols=54  Identities=20%  Similarity=0.485  Sum_probs=49.5

Q ss_pred             ccccccccCceeeeCC--CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDS--TSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~--~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+.+.+++++  +++.++++.|.+.+...+||+|++|+++|+||++|+++
T Consensus        59 ~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          59 PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            5778888888889887  79999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.9e-11  Score=106.29  Aligned_cols=51  Identities=22%  Similarity=0.267  Sum_probs=47.2

Q ss_pred             cccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        411 LFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       411 ~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ..|.+++.++++++++.++.++|.+.+.+++||+|++++++|+||+.|+++
T Consensus        75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            457778899999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.33  E-value=2.7e-11  Score=102.06  Aligned_cols=109  Identities=21%  Similarity=0.432  Sum_probs=92.9

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++++++++.++++.|.+.++..+||+|+                                            ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G   37 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--------------------------------------------GRPLG   37 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEEE
Confidence            4678899999999999999888899999986                                            38999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+|+.+......                                                                 
T Consensus        38 ~v~~~~l~~~~~~~~-----------------------------------------------------------------   52 (111)
T cd04611          38 IVTERDILRLLASGP-----------------------------------------------------------------   52 (111)
T ss_pred             EEeHHHHHHHHhcCC-----------------------------------------------------------------
Confidence            999999876543210                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            ....+++++|.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        53 ----------------------~~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          53 ----------------------DLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             ----------------------CCCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence                                  0012577889889999999999999999999999999999998899999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.4e-11  Score=107.67  Aligned_cols=53  Identities=25%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++++|.+++..+.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus        82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            688999999999999999999999999999999999985 89999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.32  E-value=6.9e-12  Score=134.00  Aligned_cols=123  Identities=16%  Similarity=0.242  Sum_probs=104.5

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      ++++.|..+++++++++++.+++++++++++..+||+|++.                                       
T Consensus        97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~---------------------------------------  137 (495)
T PTZ00314         97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK---------------------------------------  137 (495)
T ss_pred             ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc---------------------------------------
Confidence            36678888999999999999999999999999999998741                                       


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                       .+++++|+|+.+|+...  ..                                                          
T Consensus       138 -~~gkLvGIVt~~DL~~~--~~----------------------------------------------------------  156 (495)
T PTZ00314        138 -VGGKLLGIVTSRDIDFV--KD----------------------------------------------------------  156 (495)
T ss_pred             -cCCeEEEEEEHHHHhhc--cc----------------------------------------------------------
Confidence             02689999999997521  00                                                          


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                                                     ...+++++|++  +++++++++++.++.++|.+.+.+.+||+|++++++
T Consensus       157 -------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~li  205 (495)
T PTZ00314        157 -------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELV  205 (495)
T ss_pred             -------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEE
Confidence                                           01268899987  889999999999999999999999999999999999


Q ss_pred             EEEeHHHhHHHHHhhc
Q psy15912        452 GMITRKDLARYRVWRH  467 (482)
Q Consensus       452 GIITr~DLl~~~~~~~  467 (482)
                      |+||++|+++...+..
T Consensus       206 GIIT~~DIl~~~~~p~  221 (495)
T PTZ00314        206 ALVSRSDLKKNRGYPN  221 (495)
T ss_pred             EEEEehHhhhcccCch
Confidence            9999999998865443

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.32  E-value=2.9e-11  Score=101.91  Aligned_cols=109  Identities=25%  Similarity=0.432  Sum_probs=92.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.++.++.++.+.|.+.+.+.+||+|+                                            ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~G   37 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------------------------------------GRLVG   37 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------------------------------------CeEEE
Confidence            5678999999999999999888899999986                                            38999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..|+........                                                                 
T Consensus        38 ~v~~~dl~~~~~~~~-----------------------------------------------------------------   52 (111)
T cd04612          38 IVTLADIRRVPAEGR-----------------------------------------------------------------   52 (111)
T ss_pred             EEEHHHHHHHHhcCc-----------------------------------------------------------------
Confidence            999999875432210                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            ....++.++|.+++.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus        53 ----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          53 ----------------------EATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ----------------------ccccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence                                  0002567778889999999999999999999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.31  E-value=3.2e-11  Score=101.90  Aligned_cols=110  Identities=19%  Similarity=0.387  Sum_probs=90.9

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      +++.+++++.++.++.+.|.+.++..+||++++                                          +++++
T Consensus         1 ~~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------------------------------------~~~~~   38 (111)
T cd04590           1 TDIVALDADDTLEEILELIAESGHSRFPVYDGD------------------------------------------LDNII   38 (111)
T ss_pred             CceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------------------------------------CceEE
Confidence            357889999999999999998888999999874                                          15899


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+++..++.+......                                                                
T Consensus        39 G~v~~~~l~~~~~~~~----------------------------------------------------------------   54 (111)
T cd04590          39 GVVHVKDLLRALAEGE----------------------------------------------------------------   54 (111)
T ss_pred             EEEEHHHHHHHHHcCC----------------------------------------------------------------
Confidence            9999999977553210                                                                


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                                             .. .++.++|. .+.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|++
T Consensus        55 -----------------------~~-~~~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  109 (111)
T cd04590          55 -----------------------ED-LDLRDLLR-PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL  109 (111)
T ss_pred             -----------------------Cc-CCHHHHhc-CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence                                   00 13445554 577899999999999999999999999999889999999999997


Q ss_pred             H
Q psy15912        461 R  461 (482)
Q Consensus       461 ~  461 (482)
                      +
T Consensus       110 ~  110 (111)
T cd04590         110 E  110 (111)
T ss_pred             c
Confidence            4

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.7e-11  Score=101.73  Aligned_cols=54  Identities=24%  Similarity=0.449  Sum_probs=50.4

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+.+.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus        59 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          59 TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            478889899999999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.30  E-value=4.6e-11  Score=100.74  Aligned_cols=108  Identities=25%  Similarity=0.461  Sum_probs=92.6

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++.+.|...++..+||+++                                            ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------------------------~~~~G   37 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--------------------------------------------GKLVG   37 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------------------------------------CEEEE
Confidence            5678899999999999999888999999986                                            38999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+|+.+......                                                                 
T Consensus        38 ~v~~~~l~~~~~~~~-----------------------------------------------------------------   52 (110)
T cd04588          38 IVTLSDIAHAIARGL-----------------------------------------------------------------   52 (110)
T ss_pred             EEEHHHHHHHHhccc-----------------------------------------------------------------
Confidence            999999876543210                                                                 


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                             ...++.++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        53 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          53 -----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             -----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                                   002577788888999999999999999999999999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.30  E-value=3.6e-11  Score=101.81  Aligned_cols=54  Identities=22%  Similarity=0.399  Sum_probs=50.5

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|++.+.++++++++.++++.|.+.+.+++||+|++++++|+||++|++.
T Consensus        59 ~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          59 LVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            577889989999999999999999999999999999998899999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.30  E-value=1.8e-11  Score=130.95  Aligned_cols=119  Identities=13%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             cccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q psy15912        218 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPG  297 (482)
Q Consensus       218 vM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  297 (482)
                      .|.++++++.+++++.++++.|.++++..+||+|++.                                        .++
T Consensus       105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~----------------------------------------~~G  144 (505)
T PLN02274        105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGT----------------------------------------MGS  144 (505)
T ss_pred             cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC----------------------------------------cCC
Confidence            3778999999999999999999999999999998731                                        026


Q ss_pred             eEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCC
Q psy15912        298 RLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQ  377 (482)
Q Consensus       298 ~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~  377 (482)
                      +++|+|+..|+....  .                                                              
T Consensus       145 klvGIVT~~DL~~v~--~--------------------------------------------------------------  160 (505)
T PLN02274        145 KLLGYVTKRDWDFVN--D--------------------------------------------------------------  160 (505)
T ss_pred             eEEEEEEHHHHhhcc--c--------------------------------------------------------------
Confidence            999999999984321  0                                                              


Q ss_pred             CChhhhhhhCCCCCCCCccccCccccccccccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEe
Q psy15912        378 LSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMIT  455 (482)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIIT  455 (482)
                                                 ...+++++|++.  ++++++++++.+++++|.+.+.+.+||||++++++|+||
T Consensus       161 ---------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvIT  213 (505)
T PLN02274        161 ---------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVT  213 (505)
T ss_pred             ---------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence                                       012688999877  679999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHhhc
Q psy15912        456 RKDLARYRVWRH  467 (482)
Q Consensus       456 r~DLl~~~~~~~  467 (482)
                      ++|++++..+..
T Consensus       214 r~DIlk~~~~p~  225 (505)
T PLN02274        214 RTDVKRVKGYPK  225 (505)
T ss_pred             HHHHHHHhhCcC
Confidence            999999987643

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.30  E-value=1.8e-11  Score=121.05  Aligned_cols=114  Identities=15%  Similarity=0.236  Sum_probs=99.1

Q ss_pred             ccchhhcccCC-eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        212 NITARIVKSHP-VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       212 ~l~a~dvM~~~-~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      .++|+|+|.++ +.++++++++.++++.|.+.+++.+||+|++                                     
T Consensus       154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-------------------------------------  196 (268)
T TIGR00393       154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-------------------------------------  196 (268)
T ss_pred             hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------------------------------
Confidence            47999999988 9999999999999999998889999999975                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                            ++++|+++.+|+.+.+....                                                      
T Consensus       197 ------g~~~Givt~~dl~~~~~~~~------------------------------------------------------  216 (268)
T TIGR00393       197 ------NQLVGVFTDGDLRRALLGGG------------------------------------------------------  216 (268)
T ss_pred             ------CCEEEEEEcHHHHHHHhcCC------------------------------------------------------
Confidence                  68999999999976532110                                                      


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                       ....+++++|.+.+.++++++++.+|.++|.+.+.+++||+|++|++
T Consensus       217 ---------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l  263 (268)
T TIGR00393       217 ---------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKV  263 (268)
T ss_pred             ---------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeE
Confidence                                             00126889999999999999999999999999999999999988999


Q ss_pred             EEEEe
Q psy15912        451 VGMIT  455 (482)
Q Consensus       451 vGIIT  455 (482)
                      +|+|+
T Consensus       264 ~GvI~  268 (268)
T TIGR00393       264 LGVLH  268 (268)
T ss_pred             EEEEC
Confidence            99985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.4e-11  Score=105.77  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=47.0

Q ss_pred             ccccccccCceee------eCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSV------QDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V------~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~  461 (482)
                      +++++|++++..+      .+++++.++++.|.+.+.+++||+|++ |+++|+||+.|+++
T Consensus        65 ~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          65 TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            5788898766443      378999999999999999999999986 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.29  E-value=5.6e-11  Score=101.13  Aligned_cols=114  Identities=21%  Similarity=0.365  Sum_probs=98.2

Q ss_pred             hhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q psy15912        216 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKES  295 (482)
Q Consensus       216 ~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (482)
                      .++|.++++++.+.+++.++...|.++....+||++..                                          
T Consensus         2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~------------------------------------------   39 (117)
T COG0517           2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDG------------------------------------------   39 (117)
T ss_pred             cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC------------------------------------------
Confidence            34566889999999999999999999999999999863                                          


Q ss_pred             CCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCC
Q psy15912        296 PGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPD  375 (482)
Q Consensus       296 ~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~  375 (482)
                        +++|+++..|+.+++.....                                                          
T Consensus        40 --~l~Giit~~di~~~~~~~~~----------------------------------------------------------   59 (117)
T COG0517          40 --KLVGIITERDILRALAAGGK----------------------------------------------------------   59 (117)
T ss_pred             --EEEEEEEHHHHHHHHhccCC----------------------------------------------------------
Confidence              79999999999887654310                                                          


Q ss_pred             CCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHH-cCCCEEEEECCCC-eEEEE
Q psy15912        376 DQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRA-LGLRHVVVVNNNN-HVVGM  453 (482)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~-~~lr~lpVVD~~g-~lvGI  453 (482)
                                                   ...++.++|+++++++.++.++.++.+.|.+ .+.+++||+|+++ +++|+
T Consensus        60 -----------------------------~~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGi  110 (117)
T COG0517          60 -----------------------------RLLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGI  110 (117)
T ss_pred             -----------------------------ccccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEE
Confidence                                         0004788898899999999999999999999 6999999999886 99999


Q ss_pred             EeHHHhH
Q psy15912        454 ITRKDLA  460 (482)
Q Consensus       454 ITr~DLl  460 (482)
                      +|++|++
T Consensus       111 vt~~di~  117 (117)
T COG0517         111 ITLSDIL  117 (117)
T ss_pred             EEHHHcC
Confidence            9999974

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.29  E-value=5.2e-11  Score=100.61  Aligned_cols=53  Identities=25%  Similarity=0.495  Sum_probs=49.4

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.++++++++++++.++.+.|.+.+..++||+|+ |+++|+||++|+++
T Consensus        58 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          58 PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            577888889999999999999999999999999999986 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.29  E-value=3.4e-11  Score=100.90  Aligned_cols=55  Identities=22%  Similarity=0.357  Sum_probs=50.8

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus        53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~~  107 (107)
T cd04610          53 TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS  107 (107)
T ss_pred             cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhcC
Confidence            5778888889999999999999999999999999999988999999999999853

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.28  E-value=4.5e-11  Score=100.39  Aligned_cols=109  Identities=28%  Similarity=0.459  Sum_probs=89.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++.+.|.+.+++.+||+|+                                            ++++|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------------------------------------~~~~G   37 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------------------------------------GRVVG   37 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------------------------------------CeeEE
Confidence            4678899999999999999999999999986                                            38999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..|+.+.+.....                                                                
T Consensus        38 ~v~~~dl~~~~~~~~~----------------------------------------------------------------   53 (110)
T cd04609          38 SIDESDLLDALIEGKA----------------------------------------------------------------   53 (110)
T ss_pred             EEeHHHHHHHHhcccc----------------------------------------------------------------
Confidence            9999998876532200                                                                


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            ....++.++|++++.++++++++.++.++|.+ . ..+||+|++|+++|+||++|+++
T Consensus        54 ----------------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          54 ----------------------KFSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             ----------------------ccCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence                                  00125777888888999999999999999998 3 45889988899999999999987


Q ss_pred             H
Q psy15912        462 Y  462 (482)
Q Consensus       462 ~  462 (482)
                      |
T Consensus       110 ~  110 (110)
T cd04609         110 Y  110 (110)
T ss_pred             C
Confidence            5

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.28  E-value=2.2e-11  Score=102.84  Aligned_cols=55  Identities=27%  Similarity=0.388  Sum_probs=51.1

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++++|.+++.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|++++
T Consensus        54 ~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          54 PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            5777888889999999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.27  E-value=6.4e-11  Score=100.08  Aligned_cols=50  Identities=52%  Similarity=0.922  Sum_probs=46.0

Q ss_pred             ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       412 im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +|.+++.++++++++.++.+.|.+.+.+++||++ +|+++|+||++|++++
T Consensus        56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence            5777888999999999999999999999999994 7899999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=8.6e-11  Score=97.98  Aligned_cols=111  Identities=28%  Similarity=0.482  Sum_probs=93.5

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.++.+++++.++.+.|.+.++..+||++++                                           ++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~G   38 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------------------------------------GRLVG   38 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------------------------------------CCEEE
Confidence            46788999999999999999888999999875                                           58999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++.+|+.........                                                                
T Consensus        39 ~v~~~~l~~~~~~~~~----------------------------------------------------------------   54 (113)
T cd02205          39 IVTERDLLRALAEGGL----------------------------------------------------------------   54 (113)
T ss_pred             EEeHHHHHHHHHhccC----------------------------------------------------------------
Confidence            9999999776543210                                                                


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                            .....+.++|..+++++++++++.++.+.|.+.+..++||+|++++++|++|++|+++
T Consensus        55 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          55 ----------------------DPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             ----------------------CccccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence                                  0001256778888999999999999999999999999999999899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=8.8e-11  Score=99.34  Aligned_cols=53  Identities=25%  Similarity=0.419  Sum_probs=49.4

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++++|++.+.++++++++.+++++|.+.+.+.+||+| +|+++|+||++|+++
T Consensus        59 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          59 TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            57888988889999999999999999999999999998 689999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.27  E-value=8.9e-11  Score=99.27  Aligned_cols=54  Identities=20%  Similarity=0.296  Sum_probs=49.7

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++.++|.++++.+++++++.++.+.|.+.+.+.+||+| +|+++|+||++|++++
T Consensus        58 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~  111 (111)
T cd04589          58 PVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF  111 (111)
T ss_pred             CHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence            57788988999999999999999999999999999997 4899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=6.5e-11  Score=101.58  Aligned_cols=54  Identities=26%  Similarity=0.458  Sum_probs=50.2

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++.++|.+++.++++++++.++.++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus        68 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          68 PVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY  121 (121)
T ss_pred             CHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence            677889889999999999999999999999999999986 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.6e-10  Score=97.73  Aligned_cols=110  Identities=24%  Similarity=0.391  Sum_probs=91.3

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      ++.+++++.++.++++.|.+.+++.+||+|++                                            +++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------------------------------------~~~G   37 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--------------------------------------------KPVG   37 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC--------------------------------------------EEEE
Confidence            56788999999999999999889999999853                                            8999


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      +++..|+...+.....                                                                
T Consensus        38 ~v~~~dl~~~~~~~~~----------------------------------------------------------------   53 (112)
T cd04802          38 IITERDLVKKVVSRNL----------------------------------------------------------------   53 (112)
T ss_pred             EEEHHHHHHHHhhccC----------------------------------------------------------------
Confidence            9999998865432100                                                                


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                                           .....++.++|++++.++.+++++.++.+.|.+.+.+.+||+|++ +++|+||++|+++
T Consensus        54 ---------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          54 ---------------------KPREVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ---------------------CcccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence                                 001125778888889999999999999999999999999999865 9999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=99.24  E-value=5.3e-10  Score=117.34  Aligned_cols=127  Identities=13%  Similarity=0.145  Sum_probs=104.9

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...+|+|+|++  ++++++.+.+++++++.+++++|+.+||++++                                  
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~----------------------------------  229 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS----------------------------------  229 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----------------------------------
Confidence            667899999986  79999999999999999999999999999865                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              ..+++|++..+|++.......  +                                                
T Consensus       230 --------~D~IiGiv~~kDll~~~~~~~--~------------------------------------------------  251 (413)
T PRK11573        230 --------LDDAISMLRVREAYRLMTEKK--E------------------------------------------------  251 (413)
T ss_pred             --------CCceEEEEEHHHHHHHhhccC--c------------------------------------------------
Confidence                    248999999999976432210  0                                                


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                .                          ...++.+++ ++|++|++++++.++++.|++.+.+-..|+|+.
T Consensus       252 ----------~--------------------------~~~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy  294 (413)
T PRK11573        252 ----------F--------------------------TKENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY  294 (413)
T ss_pred             ----------C--------------------------CHHHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence                      0                          000344455 468889999999999999999999999999999


Q ss_pred             CeEEEEEeHHHhHHHHHh
Q psy15912        448 NHVVGMITRKDLARYRVW  465 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~~  465 (482)
                      |..+|+||.+|+++...-
T Consensus       295 G~~~GiVTleDilEeivG  312 (413)
T PRK11573        295 GDIQGLVTVEDILEEIVG  312 (413)
T ss_pred             CCeEEEeeHHHHHHHHhC
Confidence            999999999999987653

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.23  E-value=1.3e-10  Score=99.52  Aligned_cols=53  Identities=25%  Similarity=0.374  Sum_probs=49.6

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++++|.+.++++.+++++.++++.|.+.+..++||+|+ |+++|++|.+|+++
T Consensus        68 ~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          68 PVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            678889999999999999999999999999999999986 89999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.23  E-value=1.2e-11  Score=135.30  Aligned_cols=116  Identities=19%  Similarity=0.093  Sum_probs=91.6

Q ss_pred             cCCCchhhhhhhccc--cccccC-CCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q psy15912         65 SGGGMPEKYDFLSKD--NVWKSN-GKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG  139 (482)
Q Consensus        65 ~g~G~~~~~~~l~~~--~~~~~~-~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG  139 (482)
                      +|+|-+.+..+.++.  ..|... .|.  +.+|+|+|+|.|...|+..+||++|..++..+..  +.   .....+..+|
T Consensus        96 ~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~--~~---~~~r~l~~~G  170 (574)
T PRK01862         96 KGGKTDYMEAVALGDGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF--DP---PRLRLLVACG  170 (574)
T ss_pred             cCCcHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--CH---HHHHHHHHHH
Confidence            366666666666443  555443 444  9999999999999999999999999999987632  11   2345577899


Q ss_pred             HHHHhhhhhchhHHHHHHHHHhh-CCc--hhhHHHHHHHHHHHHHhhhc
Q psy15912        140 AAAQLGGVVRMTISLTIILIEAT-GNI--SFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       140 ~aa~~~g~~~~p~s~~vi~~Elt-g~~--~~~~Pl~ia~~ia~~v~~~~  185 (482)
                      +||-++++.++|++++++.+|.. +++  ..+.|.++++++++.+++.+
T Consensus       171 ~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~  219 (574)
T PRK01862        171 AAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF  219 (574)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986 433  67889999999999888764

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.22  E-value=1.4e-10  Score=97.22  Aligned_cols=53  Identities=11%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+.++++++++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus        51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            35567888899999999999999999999999999997 689999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=2.1e-10  Score=96.23  Aligned_cols=53  Identities=30%  Similarity=0.509  Sum_probs=47.9

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+.+.++.+++++.++.+.|++.+.+.+||+| +|+++|+||++|+++
T Consensus        53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            35667888899999999999999999999999999998 579999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=3e-10  Score=101.41  Aligned_cols=53  Identities=21%  Similarity=0.394  Sum_probs=49.6

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+.+.++++++++.++.+.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus        90 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          90 KVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             CHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            678899999999999999999999999999999999986 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.17  E-value=1.4e-10  Score=121.03  Aligned_cols=126  Identities=20%  Similarity=0.266  Sum_probs=109.4

Q ss_pred             CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      .+-..+++++|+.+++++++..+++++.+.|.+.+...+.|++++                                   
T Consensus       145 e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----------------------------------  189 (610)
T COG2905         145 EFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----------------------------------  189 (610)
T ss_pred             hHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------------------------------
Confidence            344568999999999999999999999999999999988888875                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              +++.||||++|+...+....                                                    
T Consensus       190 --------~~~~GIvT~~dl~~~v~~~g----------------------------------------------------  209 (610)
T COG2905         190 --------GPLLGIVTRKDLRSRVIADG----------------------------------------------------  209 (610)
T ss_pred             --------CCccceeehHHHHHHHHhcC----------------------------------------------------
Confidence                    68999999999977654321                                                    


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                                        .....+|+++|+.+|++|..++.+-+|+-+|.+.+++|+||+ ++|
T Consensus       210 ----------------------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~g  254 (610)
T COG2905         210 ----------------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDG  254 (610)
T ss_pred             ----------------------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeee-cCC
Confidence                                              012238999999999999999999999999999999999999 589


Q ss_pred             eEEEEEeHHHhHHHHH
Q psy15912        449 HVVGMITRKDLARYRV  464 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~  464 (482)
                      +++||||.+|+++...
T Consensus       255 q~~Gilt~~dIl~l~s  270 (610)
T COG2905         255 QPLGILTLTDILRLFS  270 (610)
T ss_pred             eeeEEeeHHHHHHhhC
Confidence            9999999999998643

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.16  E-value=3.5e-10  Score=96.69  Aligned_cols=54  Identities=26%  Similarity=0.391  Sum_probs=48.1

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEE---EEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHV---VVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~l---pVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++|.+++.++.+++++.++.++|.+.+.+++   ||||++|+++|+||++|+++
T Consensus        62 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          62 PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            5788999999999999999999999999886543   68888999999999999974

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.11  E-value=9.4e-09  Score=108.66  Aligned_cols=125  Identities=20%  Similarity=0.361  Sum_probs=104.4

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...+|+++|++  ++.+++.+.+++++.+.+.+++|+.+||++++                                  
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------------------------------  248 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------------------------------  248 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------------------------------
Confidence            678899999986  78999999999999999999999999999943                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              ...++|++..+|++........                                                  
T Consensus       249 --------~D~iiGiv~~Kdll~~~~~~~~--------------------------------------------------  270 (429)
T COG1253         249 --------LDNIIGIVHVKDLLRALLDGQS--------------------------------------------------  270 (429)
T ss_pred             --------CCcEEEEEEHHHHHHHHhcCcc--------------------------------------------------
Confidence                    2589999999999876644310                                                  


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                            .......+. +|+.|++++++.++++.|++.+.+-..|+|+.
T Consensus       271 --------------------------------------~~~~~~~~~-~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy  311 (429)
T COG1253         271 --------------------------------------DLDLRVLVR-PPLFVPETLSLSDLLEEFREERTHMAIVVDEY  311 (429)
T ss_pred             --------------------------------------ccchhhccc-CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence                                                  001111222 78889999999999999999999999999999


Q ss_pred             CeEEEEEeHHHhHHHHHh
Q psy15912        448 NHVVGMITRKDLARYRVW  465 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~~  465 (482)
                      |.+.|+||..|+++...-
T Consensus       312 G~~~GlVTleDIiEeIvG  329 (429)
T COG1253         312 GGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             CCeEEEeEHHHHHHHHhC
Confidence            999999999999998654

>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel

Probab=99.10  E-value=4.7e-10  Score=116.88  Aligned_cols=118  Identities=20%  Similarity=0.189  Sum_probs=99.6

Q ss_pred             ccCCCchhhhhhhccccc---ccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHH
Q psy15912         64 VSGGGMPEKYDFLSKDNV---WKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYAL  137 (482)
Q Consensus        64 ~~g~G~~~~~~~l~~~~~---~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~  137 (482)
                      ..|.|++.+...++++..   +.. ..|+  +.+|+++|+|+|.+.|++.+||++|..++..++.  +   ..+...+..
T Consensus        61 ~~g~G~~~v~~~~~~~~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--~---~~~~~~l~~  135 (383)
T cd00400          61 ARGHGIPEVIEAIALGGGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--S---RNDRRILVA  135 (383)
T ss_pred             ccCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--C---HHHHHHHHH
Confidence            678999999888875432   222 3555  9999999999999999999999999999987642  1   135667999


Q ss_pred             HHHHHHhhhhhchhHHHHHHHHHhhCCch---hhHHHHHHHHHHHHHhhhcC
Q psy15912        138 IGAAAQLGGVVRMTISLTIILIEATGNIS---FGLPLMLTLITAKWIGDFFT  186 (482)
Q Consensus       138 vG~aa~~~g~~~~p~s~~vi~~Eltg~~~---~~~Pl~ia~~ia~~v~~~~~  186 (482)
                      +||+|.++++.++|++++++.+|+++...   .+.|.++++++++.+++.+.
T Consensus       136 ~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~  187 (383)
T cd00400         136 CGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF  187 (383)
T ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998765   78999999999999999763

The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.06  E-value=4.3e-10  Score=84.10  Aligned_cols=55  Identities=27%  Similarity=0.524  Sum_probs=52.2

Q ss_pred             cccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        409 LNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       409 v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++++|+++++++++++++.++.+.|++.+.+++||+|++|+++|+||++||+++.
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence            4678999999999999999999999999999999999999999999999999874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd01031 EriC ClC chloride channel EriC

Probab=99.02  E-value=7.2e-10  Score=116.22  Aligned_cols=120  Identities=21%  Similarity=0.186  Sum_probs=100.3

Q ss_pred             cccccCCCchhhhhhhcccccccc----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912         61 GVSVSGGGMPEKYDFLSKDNVWKS----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  134 (482)
Q Consensus        61 ~~~~~g~G~~~~~~~l~~~~~~~~----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  134 (482)
                      .-...|.|++.+...++++.....    +.|+  +.+|+|+|+++|.+.|++.+||++|..++..++.    . ..+...
T Consensus        59 ~p~~~g~G~~~v~~~l~~~~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~----~-~~~~~~  133 (402)
T cd01031          59 APEAKGSGIPQVEGVLAGLLPPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT----S-PEERRQ  133 (402)
T ss_pred             CCccCCCCHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC----C-HHHHHH
Confidence            445679999999999998743211    3555  9999999999999999999999999999986532    1 134677


Q ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHH-hhCCch--hhHHHHHHHHHHHHHhhhc
Q psy15912        135 YALIGAAAQLGGVVRMTISLTIILIE-ATGNIS--FGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       135 ~a~vG~aa~~~g~~~~p~s~~vi~~E-ltg~~~--~~~Pl~ia~~ia~~v~~~~  185 (482)
                      +..+||+|.++++.++|++++++.+| +++++.  .+.|+++++++++.+++.+
T Consensus       134 l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~  187 (402)
T cd01031         134 LIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF  187 (402)
T ss_pred             HHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999 777654  7899999999999998864

This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.01  E-value=1e-09  Score=115.12  Aligned_cols=120  Identities=23%  Similarity=0.273  Sum_probs=104.1

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhC-----CCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~-----~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      .-+|+-+|+.+.++++++.|++++++.+++.     ..+.+.|+|++                                 
T Consensus       131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~---------------------------------  177 (451)
T COG2239         131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK---------------------------------  177 (451)
T ss_pred             hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc---------------------------------
Confidence            3489999999999999999999999999854     34678899986                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                                ++++|+++.++++..-                                                      
T Consensus       178 ----------~~L~Gvvsl~~Ll~a~------------------------------------------------------  193 (451)
T COG2239         178 ----------GKLLGVVSLRDLLTAE------------------------------------------------------  193 (451)
T ss_pred             ----------cceEEEeeHHHHhcCC------------------------------------------------------
Confidence                      6899999999975220                                                      


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                                            ....++++|++.+.+|.+++..+++.++|+++++-.+||||+
T Consensus       194 --------------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~  235 (451)
T COG2239         194 --------------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE  235 (451)
T ss_pred             --------------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence                                                  112789999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeHHHhHHHHHhh
Q psy15912        447 NNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~~~  466 (482)
                      +++++|+||-.|+++.....
T Consensus       236 ~~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         236 DNRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             CCceeeeeeHHHHHHHHHHH
Confidence            99999999999999875433

>PRK05277 chloride channel protein; Provisional

Probab=98.89  E-value=5.6e-09  Score=110.74  Aligned_cols=122  Identities=18%  Similarity=0.131  Sum_probs=98.4

Q ss_pred             ccccccCCCchhhhhhhcccc--cc--ccCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912         60 YGVSVSGGGMPEKYDFLSKDN--VW--KSNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  133 (482)
Q Consensus        60 ~~~~~~g~G~~~~~~~l~~~~--~~--~~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~  133 (482)
                      ++-...|.|++.+..+++++.  .|  .+..|.  +.+++|+|+|+|.+.|++.+|+++|..++..++..   . ..+..
T Consensus        65 ~~p~~~GsGi~~i~~~l~~~~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~---~-~~~~~  140 (438)
T PRK05277         65 FAPEAGGSGIPEIEGALEGLRPVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLR---S-DEARH  140 (438)
T ss_pred             cCcccCCCCHHHHHHHHcCCCccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccC---C-HHHHH
Confidence            344456899999999999873  32  123565  99999999999999999999999999999875421   1 12466


Q ss_pred             HHHHHHHHHHhhhhhchhHHHHHHHHH-hhCCc----hhhHHHHHHHHHHHHHhhhc
Q psy15912        134 KYALIGAAAQLGGVVRMTISLTIILIE-ATGNI----SFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       134 ~~a~vG~aa~~~g~~~~p~s~~vi~~E-ltg~~----~~~~Pl~ia~~ia~~v~~~~  185 (482)
                      .+..+||+|.++++.++|++++++.+| +++.+    ..+.|+++++++++.+.+.+
T Consensus       141 ~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~  197 (438)
T PRK05277        141 TLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF  197 (438)
T ss_pred             HHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999 66532    34789999999999988875

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.87  E-value=1.7e-08  Score=89.47  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             cccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        411 LFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       411 ~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                      +.|.++++++++++++.+|+++|.+.+.+++||+|+++
T Consensus        82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence            34567788999999999999999999999999998643

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG2550|consensus

Probab=98.83  E-value=6.8e-09  Score=104.59  Aligned_cols=125  Identities=19%  Similarity=0.380  Sum_probs=105.4

Q ss_pred             CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEE
Q psy15912        221 HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLV  300 (482)
Q Consensus       221 ~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lv  300 (482)
                      .+++++.|..++.+++++...+++.++||.++...                                        ..||+
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~----------------------------------------~~KLv  155 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR----------------------------------------GSKLV  155 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcc----------------------------------------cceeE
Confidence            45778999999999999999999999999986521                                        36999


Q ss_pred             EEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCCh
Q psy15912        301 GLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSS  380 (482)
Q Consensus       301 GiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~  380 (482)
                      |+|+.+|+... .+                                                                  
T Consensus       156 G~vtsrdi~f~-~~------------------------------------------------------------------  168 (503)
T KOG2550|consen  156 GIITSRDIQFL-ED------------------------------------------------------------------  168 (503)
T ss_pred             EEEehhhhhhh-hc------------------------------------------------------------------
Confidence            99999997543 11                                                                  


Q ss_pred             hhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        381 EIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                                              ....++++|++.+++.+.+.+++++-+++.+.+...+||||++|+++-+|+|+||.
T Consensus       169 ------------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~  224 (503)
T KOG2550|consen  169 ------------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM  224 (503)
T ss_pred             ------------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence                                    11268899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccccccc
Q psy15912        461 RYRVWRHGGRMGLEEL  476 (482)
Q Consensus       461 ~~~~~~~~~~~~~~~~  476 (482)
                      +.+-|...++..-++|
T Consensus       225 k~~~yPlask~~~kql  240 (503)
T KOG2550|consen  225 KNRDYPLASKDSTKQL  240 (503)
T ss_pred             hhcCCCccccCcccce
Confidence            9887776665444444

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.78  E-value=1.9e-08  Score=100.73  Aligned_cols=126  Identities=17%  Similarity=0.254  Sum_probs=106.1

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      ++.++|+|||.+  ++..+..+++.+++++.+.++.|+.+|+..++-                                 
T Consensus       197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~---------------------------------  243 (423)
T COG4536         197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL---------------------------------  243 (423)
T ss_pred             cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh---------------------------------
Confidence            678999999986  789999999999999999999999999997762                                 


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                               .+.+|++..+|+++++.+...                                                  
T Consensus       244 ---------DnIiGvlh~r~llr~l~e~~~--------------------------------------------------  264 (423)
T COG4536         244 ---------DNIIGVLHVRDLLRLLNEKNE--------------------------------------------------  264 (423)
T ss_pred             ---------hHhhhhhhHHHHHHHhhccCc--------------------------------------------------
Confidence                     369999999999998876410                                                  


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                +                          ...++.... ..||.|++.+++.+-+..|++.+-+.-.|||+.
T Consensus       265 ----------~--------------------------~k~d~~~~a-~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY  307 (423)
T COG4536         265 ----------F--------------------------TKEDILRAA-DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY  307 (423)
T ss_pred             ----------c--------------------------cHhHHHHHh-cCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence                      0                          001232222 468999999999999999999999999999999


Q ss_pred             CeEEEEEeHHHhHHHHH
Q psy15912        448 NHVVGMITRKDLARYRV  464 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~  464 (482)
                      |.+.|+||.+|+++-.+
T Consensus       308 G~i~GLVTLEDIlEEIV  324 (423)
T COG4536         308 GDIQGLVTLEDILEEIV  324 (423)
T ss_pred             CcEEeeeeHHHHHHHHh
Confidence            99999999999998654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.66  E-value=6.9e-08  Score=91.09  Aligned_cols=128  Identities=19%  Similarity=0.359  Sum_probs=106.4

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      ...++|+|||.+  .+++++...++.+.+..+.++.|+.|||+.++.                                 
T Consensus        64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edk---------------------------------  110 (293)
T COG4535          64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK---------------------------------  110 (293)
T ss_pred             HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCc---------------------------------
Confidence            346899999976  789999999999999999999999999998863                                 


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                               ..+.|++..+||+..+....                                                   
T Consensus       111 ---------D~v~GIL~AKDLL~~~~~~~---------------------------------------------------  130 (293)
T COG4535         111 ---------DHVEGILLAKDLLPFMRSDA---------------------------------------------------  130 (293)
T ss_pred             ---------hhhhhhhhHHHHHHHhcCCc---------------------------------------------------
Confidence                     47999999999998754320                                                   


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                           ...+++++. ++...|++...+.+.++-||....+-..|+|+-
T Consensus       131 -------------------------------------~~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDEf  172 (293)
T COG4535         131 -------------------------------------EPFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF  172 (293)
T ss_pred             -------------------------------------ccccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEecc
Confidence                                                 112455555 445679999999999999999999888999999


Q ss_pred             CeEEEEEeHHHhHHHHHhhcc
Q psy15912        448 NHVVGMITRKDLARYRVWRHG  468 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~~~~~  468 (482)
                      |-+.|.||-.|++...+-...
T Consensus       173 GgVsGLVTIEDiLEqIVGdIE  193 (293)
T COG4535         173 GGVSGLVTIEDILEQIVGDIE  193 (293)
T ss_pred             CCeeeeEEHHHHHHHHhcccc
Confidence            999999999999987654433

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.63  E-value=1.2e-07  Score=70.78  Aligned_cols=56  Identities=25%  Similarity=0.543  Sum_probs=52.5

Q ss_pred             hhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCC
Q psy15912        215 ARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKE  294 (482)
Q Consensus       215 a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (482)
                      |+|+|.+++.++++++++.++.+.|++++++.+||+|++                                         
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------------------------------------   39 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------------------------------------   39 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------------------------------------
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------------------------------------
Confidence            689999999999999999999999999999999999886                                         


Q ss_pred             CCCeEEEEEeHHHHHHHHH
Q psy15912        295 SPGRLVGLILRSQLIILIK  313 (482)
Q Consensus       295 ~~g~lvGiIs~~dL~~~l~  313 (482)
                        ++++|+++.+||++++.
T Consensus        40 --~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen   40 --GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             --SBEEEEEEHHHHHHHHH
T ss_pred             --CEEEEEEEHHHHHhhhh
Confidence              79999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins

Probab=98.59  E-value=3.1e-07  Score=95.60  Aligned_cols=117  Identities=16%  Similarity=0.140  Sum_probs=94.8

Q ss_pred             cCCCchhhhhhhccc---ccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q psy15912         65 SGGGMPEKYDFLSKD---NVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALI  138 (482)
Q Consensus        65 ~g~G~~~~~~~l~~~---~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~v  138 (482)
                      .|.|.+.+.+.+.++   ..|.. +.|+  +.+++++|+|+|.+.|+..+|+.+|..++..+.    .. ..+...+..+
T Consensus        55 ~~~g~~~v~~~~~~~~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~----~~-~~~~r~l~~~  129 (378)
T cd03682          55 SEKGNNLIIEEIHGPEEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFK----LP-EEDRRILLIA  129 (378)
T ss_pred             cCCChHHHHHHHHccCCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhC----CC-HHHHHHHHHH
Confidence            467888888888754   33333 2444  999999999999999999999999999998552    21 1234568999


Q ss_pred             HHHHHhhhhhchhHHHHHHHHHhhC----CchhhHHHHHHHHHHHHHhhhcC
Q psy15912        139 GAAAQLGGVVRMTISLTIILIEATG----NISFGLPLMLTLITAKWIGDFFT  186 (482)
Q Consensus       139 G~aa~~~g~~~~p~s~~vi~~Eltg----~~~~~~Pl~ia~~ia~~v~~~~~  186 (482)
                      ||+|.++++.++|++++++.+|.+.    ++..++|.++++++++.+++.++
T Consensus       130 g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~  181 (378)
T cd03682         130 GIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG  181 (378)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999983    45778899999999999888664

This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.52  E-value=1.4e-06  Score=90.10  Aligned_cols=56  Identities=23%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .+.+.|.+...++++++++.+++..|.+.+.. +||+|++|+++|+||+.+++++..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            35556677788899999999999999999998 999999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.2e-06  Score=91.68  Aligned_cols=118  Identities=17%  Similarity=0.211  Sum_probs=95.0

Q ss_pred             ccchhhcccCCe---eEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        212 NITARIVKSHPV---ICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       212 ~l~a~dvM~~~~---~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      -+++.++|.++.   +...+.....++++.|+........|+|++                                   
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  317 (400)
T PRK10070        273 VFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----------------------------------  317 (400)
T ss_pred             ccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------------------------------
Confidence            467888886533   223466788999999999999999999986                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              ++++|+++.+++.......                                                     
T Consensus       318 --------~~~~g~~~~~~~~~~~~~~-----------------------------------------------------  336 (400)
T PRK10070        318 --------NKFVGAVSIDSLKTALTQQ-----------------------------------------------------  336 (400)
T ss_pred             --------CcEEEEEeHHHHHhhhhcC-----------------------------------------------------
Confidence                    6899999999986543211                                                     


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                                            -.+.+.+.+...++++++++.+++..+.+.... +||||++|
T Consensus       337 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~  377 (400)
T PRK10070        337 --------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQ  377 (400)
T ss_pred             --------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCC
Confidence                                                  035555667778899999999999999997766 99999999


Q ss_pred             eEEEEEeHHHhHHHHH
Q psy15912        449 HVVGMITRKDLARYRV  464 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~  464 (482)
                      +++|+||+.++++...
T Consensus       378 ~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        378 QYVGIISKGMLLRALD  393 (400)
T ss_pred             cEEEEEEHHHHHHHHH
Confidence            9999999999998764

>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]

Probab=98.46  E-value=8.9e-07  Score=93.94  Aligned_cols=122  Identities=21%  Similarity=0.231  Sum_probs=101.7

Q ss_pred             ccccccCCCchhhhhhhccc---ccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912         60 YGVSVSGGGMPEKYDFLSKD---NVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  133 (482)
Q Consensus        60 ~~~~~~g~G~~~~~~~l~~~---~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~  133 (482)
                      +.-...|-|-+.+.+++++.   ..|.. ..|+  +.+++++|+|.|...|+..+|+.+|..++..+..   .  ..+..
T Consensus        85 ~~p~~~g~Gi~~~i~a~~~~~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~---~--~~~~r  159 (443)
T COG0038          85 FAPEARGSGIPQAIEALHGRKGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKL---S--REDRR  159 (443)
T ss_pred             hCccccCCChhHHHHHHhcCCCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCC---C--HHHHH
Confidence            34446788999999999884   44444 3555  9999999999999999999999999999987742   1  13566


Q ss_pred             HHHHHHHHHHhhhhhchhHHHHHHHHHhhC----CchhhHHHHHHHHHHHHHhhhcC
Q psy15912        134 KYALIGAAAQLGGVVRMTISLTIILIEATG----NISFGLPLMLTLITAKWIGDFFT  186 (482)
Q Consensus       134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg----~~~~~~Pl~ia~~ia~~v~~~~~  186 (482)
                      ....+|+||-++++.++|++++++++|.-.    ++..+.|+++++++++.+.+.++
T Consensus       160 ~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~  216 (443)
T COG0038         160 ILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFG  216 (443)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcC
Confidence            789999999999999999999999999876    44778999999999999998775

>KOG1764|consensus

Probab=98.45  E-value=1.8e-06  Score=89.60  Aligned_cols=127  Identities=19%  Similarity=0.306  Sum_probs=96.1

Q ss_pred             CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEE
Q psy15912        222 PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVG  301 (482)
Q Consensus       222 ~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvG  301 (482)
                      .+.++.+++++.++++.|.+.+.+++||||+.                                           |+.+|
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-------------------------------------------g~~v~  274 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDEN-------------------------------------------GKKVG  274 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-------------------------------------------Cceec
Confidence            68899999999999999999999999999986                                           56699


Q ss_pred             EEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChh
Q psy15912        302 LILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSE  381 (482)
Q Consensus       302 iIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~  381 (482)
                      .++..|+........+..                                                          ....
T Consensus       275 ~~s~~Dv~~l~~~~~~~~----------------------------------------------------------~~~~  296 (381)
T KOG1764|consen  275 NYSRFDVIHLAREGTYNN----------------------------------------------------------LDLS  296 (381)
T ss_pred             ceehhhhhhhhhcCccCc----------------------------------------------------------cchh
Confidence            999999887665431100                                                          0000


Q ss_pred             hhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ...+..                    .....=....+++.++.++.+++..+...+.+++.|||++|+++|+||-.|++.
T Consensus       297 ~l~~~~--------------------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~  356 (381)
T KOG1764|consen  297 CLSEAL--------------------SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILS  356 (381)
T ss_pred             HHHHHh--------------------hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHH
Confidence            000000                    000111112588999999999999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q psy15912        462 YRVWRHGG  469 (482)
Q Consensus       462 ~~~~~~~~  469 (482)
                      +......+
T Consensus       357 ~l~~~p~~  364 (381)
T KOG1764|consen  357 YLVLTPSG  364 (381)
T ss_pred             HHHhCccC
Confidence            97766443

>cd01033 ClC_like Putative ClC chloride channel

Probab=98.37  E-value=2.5e-06  Score=89.16  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=92.9

Q ss_pred             cCCCchhhhhhhcccc--cccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q psy15912         65 SGGGMPEKYDFLSKDN--VWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG  139 (482)
Q Consensus        65 ~g~G~~~~~~~l~~~~--~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG  139 (482)
                      .|-|-+.+...++++-  .|.- ..|.  ..+|+|+|+|.|...|+..+|+++|..+++.++.  +.   .+...+..+|
T Consensus        63 ~g~gi~~v~~~~~~~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~--~~---~~~r~li~~G  137 (388)
T cd01033          63 KGKKLVSIKQAVRGKKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGL--TV---ADRRLLVACA  137 (388)
T ss_pred             cCCCcccHHHHhcCCCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCC--CH---HHHHHHHHHH
Confidence            4667778888887762  2222 2343  8899999999999999999999999999876532  11   2455688999


Q ss_pred             HHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912        140 AAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       140 ~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~  185 (482)
                      ++|-++++.++|++.+++.+|...   +...+.|.++++++++.+++.+
T Consensus       138 aaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~  186 (388)
T cd01033         138 AGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL  186 (388)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999874   5567789999999999988865

Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>cd03685 ClC_6_like ClC-6-like chloride channel proteins

Probab=98.33  E-value=3.9e-07  Score=97.33  Aligned_cols=120  Identities=19%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             cccCCCchhhhhhhccccc-----cc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHH----------Hhc
Q psy15912         63 SVSGGGMPEKYDFLSKDNV-----WK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ----------SIF  124 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~-----~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~----------~~~  124 (482)
                      ...|.|.+.+...++|...     |. ++.|.  +.+++|+|++.|.+.|+..+||.+|..+++...          ..+
T Consensus       102 ~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~  181 (466)
T cd03685         102 TAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYF  181 (466)
T ss_pred             ccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhc
Confidence            3668999999999997532     12 23665  999999999999999999999999999997321          111


Q ss_pred             CCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhh
Q psy15912        125 PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDF  184 (482)
Q Consensus       125 ~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~  184 (482)
                      .+.  .+...+..+||||.++++.++|++.+++.+|.++   +.+...+.+++++++..+++.
T Consensus       182 ~~~--~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~  242 (466)
T cd03685         182 RND--RDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNF  242 (466)
T ss_pred             cCH--HHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            111  2345689999999999999999999999999876   334556666666666666554

This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.

>cd01036 ClC_euk Chloride channel, ClC

Probab=98.33  E-value=7.9e-07  Score=93.70  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=97.6

Q ss_pred             cccccCCCchhhhhhhcccc-----ccc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhc--------
Q psy15912         61 GVSVSGGGMPEKYDFLSKDN-----VWK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIF--------  124 (482)
Q Consensus        61 ~~~~~g~G~~~~~~~l~~~~-----~~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~--------  124 (482)
                      .-...|.|-+.+..+++|..     .|. .+.|.  +.+++|+|+|.|...|+..+||++|..+++......        
T Consensus        59 ~p~a~GsGIp~v~~~l~g~~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~  138 (416)
T cd01036          59 APQAAGSGIPEVMAYLNGVHLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQ  138 (416)
T ss_pred             CcccCCCCHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhh
Confidence            44567889999999998742     222 23555  999999999999999999999999999998654321        


Q ss_pred             --CCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCc---hhhHHHHHHHHHHHHHhhhc
Q psy15912        125 --PEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNI---SFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       125 --~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~---~~~~Pl~ia~~ia~~v~~~~  185 (482)
                        .+  ..+...+..+|++|-++++.++|++.+++.+|.+...   ..+.|.+++++++..+.+.+
T Consensus       139 ~~~~--~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~  202 (416)
T cd01036         139 LFRN--PRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY  202 (416)
T ss_pred             hccC--HHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence              11  1245668899999999999999999999999988632   46788999999888888765

These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.29  E-value=5.2e-07  Score=87.78  Aligned_cols=59  Identities=20%  Similarity=0.358  Sum_probs=54.9

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++..++|+++.+++++++++.+|.+.+.+++++.+||+|++.|++||||+.||++.-.
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~  302 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR  302 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccC
Confidence            34788999999999999999999999999999999999999999999999999998533

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.29  E-value=1.3e-06  Score=74.76  Aligned_cols=55  Identities=24%  Similarity=0.423  Sum_probs=51.8

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      .+++++|.+.+.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            4689999999999999999999999999999999999998999999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd03684 ClC_3_like ClC-3-like chloride channel proteins

Probab=98.20  E-value=4.4e-06  Score=88.81  Aligned_cols=122  Identities=16%  Similarity=0.058  Sum_probs=95.6

Q ss_pred             ccccCCCchhhhhhhccccc-----c-ccCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912         62 VSVSGGGMPEKYDFLSKDNV-----W-KSNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  133 (482)
Q Consensus        62 ~~~~g~G~~~~~~~l~~~~~-----~-~~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~  133 (482)
                      -...|.|-+.+..+++|+..     | ..+.|.  +.+++++|+|.|...|+..+||++|..+++.+..+-.+.  .+..
T Consensus        51 p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~--~~~r  128 (445)
T cd03684          51 PYAAGSGIPEIKTILSGFIIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNE--AKRR  128 (445)
T ss_pred             ccccCCCHHHHHHHHcCccccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCH--HHHH
Confidence            34557788888889987522     2 223554  999999999999999999999999999998765322121  2455


Q ss_pred             HHHHHHHHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912        134 KYALIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~  185 (482)
                      .+..+|++|-++++.++|++.+++.+|...   +...+.|.+++++++..+.+.+
T Consensus       129 ~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~  183 (445)
T cd03684         129 EILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL  183 (445)
T ss_pred             HHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence            678899999999999999999999998654   3456788999999998888754

This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn

>cd01034 EriC_like ClC chloride channel family

Probab=98.13  E-value=4.9e-06  Score=87.01  Aligned_cols=117  Identities=21%  Similarity=0.182  Sum_probs=92.1

Q ss_pred             ccCCCchhhhhhhccccc--------cc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCch
Q psy15912         64 VSGGGMPEKYDFLSKDNV--------WK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDP  132 (482)
Q Consensus        64 ~~g~G~~~~~~~l~~~~~--------~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~  132 (482)
                      ..|.|-+.+..+++++..        +. ...|.  +.+|+++|+|.|...|+..+|+++|..+++.+....    ..+-
T Consensus        51 ~~gsGi~~v~~~~~~~~~~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~----~~~~  126 (390)
T cd01034          51 AAGSGIPQVIAALELPSAAARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWG----GLSE  126 (390)
T ss_pred             CCCCCHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCc----hHHH
Confidence            457888899999986532        11 13555  999999999999999999999999999998654311    1345


Q ss_pred             hHHHHHHHHHHhhhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHhhh
Q psy15912        133 GKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDF  184 (482)
Q Consensus       133 ~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~---~~~~~Pl~ia~~ia~~v~~~  184 (482)
                      ..+..+|++|-++++.++|++.+++.+|....   .....|++++++++.+++..
T Consensus       127 r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~  181 (390)
T cd01034         127 RGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLA  181 (390)
T ss_pred             HHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999988863   34667788888888777764

These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.

>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease

Probab=98.11  E-value=6.3e-06  Score=85.11  Aligned_cols=119  Identities=21%  Similarity=0.197  Sum_probs=92.8

Q ss_pred             cccCCCchhhhhhhcccccccc----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q psy15912         63 SVSGGGMPEKYDFLSKDNVWKS----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA  136 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~~~~----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a  136 (482)
                      ...|.|-+.+...++++.....    ..|.  +.+|+++|+|-|...|+..+|+++|..+++.+..  +..  .....+.
T Consensus        16 ~~~g~Gi~~v~~~~~~~~~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~--~~~--~~~r~l~   91 (355)
T PF00654_consen   16 EAAGSGIPEVKAALRGKSGRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRL--SRN--ETRRLLL   91 (355)
T ss_dssp             GGSB-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT----CH--HHHHHHH
T ss_pred             ccCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcc--cch--HHHhHHH
Confidence            3456777899999988754322    3554  9999999999999999999999999999977432  110  1134589


Q ss_pred             HHHHHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912        137 LIGAAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       137 ~vG~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~  185 (482)
                      .+|++|-++++.++|++.+++.+|...   +...+.|.++++++++.+.+.+
T Consensus        92 ~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~  143 (355)
T PF00654_consen   92 AAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL  143 (355)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999976   6789999999999999999976

; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....

>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.11  E-value=1.5e-05  Score=84.12  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=91.3

Q ss_pred             cCCCchhhhhhhcc--cccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q psy15912         65 SGGGMPEKYDFLSK--DNVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIG  139 (482)
Q Consensus        65 ~g~G~~~~~~~l~~--~~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG  139 (482)
                      .+.|-+.+.++.++  .+.+.. ..|.  +.+++|+|+|.|...|+..+||++|..+++.++   +.   .+...+..+|
T Consensus        78 ~~~g~~~vi~av~~~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~---~~---~~~r~li~~G  151 (418)
T PRK01610         78 RPHAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT---PR---QEWKLWIACG  151 (418)
T ss_pred             cCCCcHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC---Ch---HHHHHHHHHH
Confidence            34566666666654  334433 2444  999999999999999999999999999998764   11   3556789999


Q ss_pred             HHHHhhhhhchhHHHHHHHHHhhC---CchhhHHHHHHHHHHHHHhhhc
Q psy15912        140 AAAQLGGVVRMTISLTIILIEATG---NISFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       140 ~aa~~~g~~~~p~s~~vi~~Eltg---~~~~~~Pl~ia~~ia~~v~~~~  185 (482)
                      ++|-++++.++|++.+++.+|...   .+..+.|+++++++++.+++.+
T Consensus       152 aaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~  200 (418)
T PRK01610        152 AAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL  200 (418)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999753   3456788999999999888865

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.09  E-value=4.6e-06  Score=79.92  Aligned_cols=58  Identities=29%  Similarity=0.458  Sum_probs=54.0

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ..++.++|+++++++.+++++.++.++|.+.++|..||+|++ +++|++|.+|+.++..
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia  228 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIA  228 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHH
Confidence            347999999999999999999999999999999999999855 9999999999998865

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.08  E-value=1.4e-06  Score=95.18  Aligned_cols=162  Identities=12%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             HHHHcCCCCCCCCC------CCCccccchhhccc-CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccc
Q psy15912        193 HIQLSGIPLLAWDP------PPLSSNITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQ  265 (482)
Q Consensus       193 ~L~~~g~p~l~~~~------~~~l~~l~a~dvM~-~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~  265 (482)
                      ..+.++.|.+....      .......+++++|+ +++.++++++++.++.+.|.+++++.+||||++            
T Consensus       220 la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~------------  287 (546)
T PRK14869        220 LAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED------------  287 (546)
T ss_pred             HHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC------------
Confidence            34556776664321      12234678999999 899999999999999999999999999999976            


Q ss_pred             cCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCC
Q psy15912        266 SSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWS  345 (482)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  345 (482)
                                                     |+++|+++++|+......+...-...........             ..
T Consensus       288 -------------------------------g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~-------------~~  323 (546)
T PRK14869        288 -------------------------------GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEG-------------IE  323 (546)
T ss_pred             -------------------------------CCEEEEEEHHHhhccccCceEEEcCccccccccc-------------hh
Confidence                                           6999999999998754332100000000000000             00


Q ss_pred             CCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceee---eC
Q psy15912        346 PGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSV---QD  422 (482)
Q Consensus       346 ~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V---~~  422 (482)
                      .....+                                                   .-+.-++.++|++.|+.+   +.
T Consensus       324 ~~~i~~---------------------------------------------------iiDHH~~~~~~~~~pi~~~~~~~  352 (546)
T PRK14869        324 EAEILE---------------------------------------------------IIDHHRLGDIQTSNPIFFRNEPV  352 (546)
T ss_pred             hceEEE---------------------------------------------------EecCCccCCCCCCCCcEEEeeee
Confidence            000000                                                   001113556777777665   44


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        423 STSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       423 ~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ..+.+.++++|++.+....|++. ...+.||+|.++.+++
T Consensus       353 gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        353 GSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS  391 (546)
T ss_pred             eeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence            67788999999999999888885 4579999999998876

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.93  E-value=2.7e-05  Score=66.60  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++.++++++++.++.+.|.+.+.+++||+|++|+++|++|++|++.+.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~   49 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA   49 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence            567899999999999999999999999999899999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.90  E-value=2.7e-05  Score=64.77  Aligned_cols=47  Identities=17%  Similarity=0.298  Sum_probs=42.9

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARY  462 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~  462 (482)
                      .++++++++++.++.+.|.+.+.+++||+|++ |+++|+||++|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence            35789999999999999999999999999975 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd03683 ClC_1_like ClC-1-like chloride channel proteins

Probab=97.89  E-value=2.1e-05  Score=83.26  Aligned_cols=124  Identities=13%  Similarity=-0.002  Sum_probs=93.3

Q ss_pred             cccccCCCchhhhhhhcccccc-----cc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcC-CCCCCc
Q psy15912         61 GVSVSGGGMPEKYDFLSKDNVW-----KS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFP-EATWID  131 (482)
Q Consensus        61 ~~~~~g~G~~~~~~~l~~~~~~-----~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~-~~~~~~  131 (482)
                      .-...|.|-+.+...++|....     .. ..|.  +.+++|+|+|-|...|+..+||++|..+++....... .....+
T Consensus        67 ~p~a~GsGIp~v~~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~  146 (426)
T cd03683          67 SPQAVGSGIPEMKTILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESR  146 (426)
T ss_pred             CCccCCCCHHHHHHHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHH
Confidence            4456788888888889875221     11 2454  9999999999999999999999999999986642110 000012


Q ss_pred             hhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHhhh
Q psy15912        132 PGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDF  184 (482)
Q Consensus       132 ~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~---~~~~~Pl~ia~~ia~~v~~~  184 (482)
                      ...+..+|+||-++++.++|++.+++.+|....   ...+.|.+++++++..+.+.
T Consensus       147 rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~  202 (426)
T cd03683         147 RMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRL  202 (426)
T ss_pred             HHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            335789999999999999999999999998753   35667888888888877664

This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.88  E-value=1.6e-05  Score=84.75  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=54.4

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      .+++++|.+++.++++++++.++.+.|+++++..+||||++                                       
T Consensus       195 ~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~---------------------------------------  235 (449)
T TIGR00400       195 EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE---------------------------------------  235 (449)
T ss_pred             CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC---------------------------------------
Confidence            46899999999999999999999999999999999999976                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        293 KESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                          |+++|+|+.+|+.+.+.+.
T Consensus       236 ----g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       236 ----GRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             ----CeEEEEEEHHHHHHHHHhh
Confidence                6899999999998877553

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK03655 putative ion channel protein; Provisional

Probab=97.87  E-value=0.00014  Score=76.59  Aligned_cols=90  Identities=16%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHh-hCCchh
Q psy15912         89 RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEA-TGNISF  167 (482)
Q Consensus        89 ~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~El-tg~~~~  167 (482)
                      +.+++++|+|-|...|+..+||.+|..+++.+.   +.   .+......+|+||-++++.++|++.+++.+|. .+++..
T Consensus       107 ~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~---~~---~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~  180 (414)
T PRK03655        107 LILGLAGGVSLGPEHPIMTVNIALAVAIGARLL---PR---VNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEV  180 (414)
T ss_pred             HHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc---cC---CChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhH
Confidence            788899999999999999999999999997652   22   13334677899999999999999999999996 454442


Q ss_pred             ------hHHHHHHHHHHHHHhhhc
Q psy15912        168 ------GLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       168 ------~~Pl~ia~~ia~~v~~~~  185 (482)
                            +.|+ ++.+++..++..+
T Consensus       181 ~~~~~~~~~v-~aa~~a~~v~~~~  203 (414)
T PRK03655        181 PLWDRLFAPL-MAAAAGALTTGLF  203 (414)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHh
Confidence                  3344 3444466665544

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.85  E-value=4.5e-05  Score=53.06  Aligned_cols=46  Identities=30%  Similarity=0.611  Sum_probs=42.4

Q ss_pred             ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +.++.+++++.++.+.|.+.+.+++||+|++++++|+++.+|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence            5678999999999999999999999999988999999999999764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.85  E-value=6.3e-05  Score=64.30  Aligned_cols=41  Identities=17%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  253 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~  253 (482)
                      .+++|+|.+++.++.+++++.++++.|.+.++..+||+|++
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~   98 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD   98 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC
Confidence            78999999999999999999999999999999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.85  E-value=1.6e-05  Score=70.95  Aligned_cols=60  Identities=27%  Similarity=0.426  Sum_probs=54.5

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      .+..+.+|+++.+.+++++++.++.++|+..|+.++||++ +|+++|-||..|+.+...+.
T Consensus        64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~-~~k~VGsItE~~iv~~~le~  123 (187)
T COG3620          64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE-EDKVVGSITENDIVRALLEG  123 (187)
T ss_pred             eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee-CCeeeeeecHHHHHHHHhcc
Confidence            4577899999999999999999999999999999999997 48999999999999876433

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.82  E-value=3e-05  Score=78.84  Aligned_cols=57  Identities=25%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             cccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .+|+++|+++  +.++++++++.++.+.|.+.+..++||||++|+++|+||.+|+.+..
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~  255 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL  255 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHH
Confidence            5899999998  99999999999999999999999999999999999999999998754

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.81  E-value=7.1e-05  Score=66.17  Aligned_cols=49  Identities=22%  Similarity=0.373  Sum_probs=45.5

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++.++++++++.++.+.|.+.+...+||+|++|+++|+||.+|++++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~   50 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF   50 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence            5678999999999999999999999999999999999999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=5.8e-05  Score=62.38  Aligned_cols=47  Identities=21%  Similarity=0.425  Sum_probs=43.6

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+...
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            56789999999999999999999999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.76  E-value=4.3e-05  Score=77.85  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=52.7

Q ss_pred             cccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        406 TVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       406 ~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .+.++++|++  +++++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+..
T Consensus       201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~  260 (326)
T PRK10892        201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVF  260 (326)
T ss_pred             cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHH
Confidence            4579999997  899999999999999999999998889899899999999999998643

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.72  E-value=0.00012  Score=63.50  Aligned_cols=50  Identities=18%  Similarity=0.404  Sum_probs=45.6

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++.++++++++.++.+.|++.+.+++||+|++++++|+||.+|+++...
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~   51 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLS   51 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence            46788999999999999999999999999998899999999999997543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=0.00012  Score=61.41  Aligned_cols=48  Identities=27%  Similarity=0.427  Sum_probs=44.3

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~   49 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAV   49 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHH
Confidence            567899999999999999999999999999889999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.67  E-value=0.00012  Score=60.79  Aligned_cols=48  Identities=29%  Similarity=0.527  Sum_probs=44.0

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++++++++.++.++.+.|.+.+.+++||+|++|+++|++|++|+++.
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~   48 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA   48 (106)
T ss_pred             CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence            357789999999999999999999999999988999999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.67  E-value=0.0001  Score=61.79  Aligned_cols=49  Identities=14%  Similarity=0.325  Sum_probs=44.7

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++++++++++++.++.+.|++.+.+++||+|++|+++|+|+++|+.+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~   49 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL   49 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence            3567899999999999999999999999999889999999999998754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.66  E-value=0.00014  Score=60.80  Aligned_cols=49  Identities=20%  Similarity=0.404  Sum_probs=45.1

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++++++++++++.++.+.|.+.+..++||+|++|+++|++|.+|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   50 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV   50 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence            5678899999999999999999999999999889999999999998653

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.66  E-value=6.4e-05  Score=74.23  Aligned_cols=58  Identities=28%  Similarity=0.328  Sum_probs=53.5

Q ss_pred             ccccccccccC-ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        406 TVKLNLFMNTS-PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       406 ~i~v~~im~~~-p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .++++++|+++ +.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+..
T Consensus       154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~  212 (268)
T TIGR00393       154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL  212 (268)
T ss_pred             hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH
Confidence            35899999998 99999999999999999999999999999899999999999998753

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.63  E-value=0.00011  Score=61.96  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=38.0

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  253 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~  253 (482)
                      .++.++|..++.++.+++++.++++.|.+++.+.+||+|++
T Consensus        56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~   96 (111)
T cd04603          56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE   96 (111)
T ss_pred             cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence            46889999999999999999999999999999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.60  E-value=0.00017  Score=61.66  Aligned_cols=50  Identities=28%  Similarity=0.494  Sum_probs=45.6

Q ss_pred             ccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        414 NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       414 ~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++++.++++++++.++.+.|.+.+.+++||+|++|+++|+|+++|+++..
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~   50 (124)
T cd04600           1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHA   50 (124)
T ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhh
Confidence            35788999999999999999999999999999889999999999998754

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.59  E-value=0.00022  Score=59.62  Aligned_cols=49  Identities=22%  Similarity=0.432  Sum_probs=44.6

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++.++++++++.++.+.|.+.+..++||+|++++++|+++.+|+++...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~   50 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA   50 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence            4677899999999999999999999999998899999999999997654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.56  E-value=0.00016  Score=63.67  Aligned_cols=49  Identities=33%  Similarity=0.403  Sum_probs=45.0

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++++++++++.++.+.|.+.+.+.+||+|++|+++|+|+++|++++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~   50 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF   50 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence            4678999999999999999999999999999899999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.56  E-value=0.00019  Score=60.79  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=38.9

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  253 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~  253 (482)
                      ..+++++|.+++.++.+++++.++++.|.+++.+.+||+|++
T Consensus        58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~   99 (114)
T cd04619          58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN   99 (114)
T ss_pred             cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence            457889999999999999999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.54  E-value=0.00025  Score=60.49  Aligned_cols=49  Identities=24%  Similarity=0.436  Sum_probs=44.9

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+.+...
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~   50 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI   50 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence            4678999999999999999999999999998899999999999988654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.53  E-value=0.00025  Score=59.93  Aligned_cols=50  Identities=26%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++.++++++++.++.+.|.+.+...+||+|++|+++|+++++|+.+...
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   50 (115)
T cd04593           1 PPPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE   50 (115)
T ss_pred             CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence            35678999999999999999999999999998899999999999987543

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.53  E-value=0.00024  Score=59.93  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=44.5

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++++++++++.++.+.|++.+.+.+||+|++|+++|+|+.+|+++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~   50 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK   50 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence            3578999999999999999999999999998899999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.52  E-value=0.00019  Score=62.77  Aligned_cols=49  Identities=24%  Similarity=0.381  Sum_probs=45.0

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++.++.+++++.++.+.|.+.+.+++||+|++++++|+|+++|+++..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~   50 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRA   50 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHh
Confidence            5678899999999999999999999999999889999999999998754

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.0003  Score=58.97  Aligned_cols=49  Identities=12%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|++++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~   50 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL   50 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence            4577999999999999999999999999998899999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.48  E-value=0.00019  Score=61.91  Aligned_cols=49  Identities=22%  Similarity=0.384  Sum_probs=44.8

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .+.++++++++.++.+.|.+.+...+||+|++|+++|+|+.+|+++...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~   50 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLL   50 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhc
Confidence            4678999999999999999999999999998899999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.48  E-value=0.00034  Score=58.12  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=44.4

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++.+++++.++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+..
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~   50 (109)
T cd04583           2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY   50 (109)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence            4577899999999999999999999999999889999999999998753

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.48  E-value=0.0002  Score=76.31  Aligned_cols=59  Identities=17%  Similarity=0.350  Sum_probs=54.2

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++++++|++++.++.+++++.++.+.|++.+.+.+||+|++++++|+||.+|+++...
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  392 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALF  392 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence            35799999999999999999999999999999999999998899999999999997543

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.47  E-value=0.00027  Score=59.64  Aligned_cols=49  Identities=24%  Similarity=0.280  Sum_probs=43.1

Q ss_pred             CceeeeCCCCHHHHHHHHHHcC-CCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALG-LRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~-lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +..++++++++.++.+.|.+.+ .+.+||+|++|+++|+|+.+|+++...
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~   51 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT   51 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence            4567899999999999997775 889999998899999999999997653

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.46  E-value=0.00031  Score=60.69  Aligned_cols=46  Identities=28%  Similarity=0.541  Sum_probs=42.9

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ++.++.+++++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            4678999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.46  E-value=0.00054  Score=73.77  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             cchhhccc-CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        213 ITARIVKS-HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       213 l~a~dvM~-~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      .+++|+|. ++++++.+++++.++++.|.+++.+.+||+|++                                      
T Consensus       147 ~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~--------------------------------------  188 (486)
T PRK05567        147 QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN--------------------------------------  188 (486)
T ss_pred             CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            46889998 789999999999999999999999999999986                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHH
Q psy15912        292 RKESPGRLVGLILRSQLIILI  312 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l  312 (482)
                           ++++|+|+.+|+++.+
T Consensus       189 -----g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        189 -----GRLKGLITVKDIEKAE  204 (486)
T ss_pred             -----CcEEEEEEhHHhhhhh
Confidence                 6899999999998765

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.46  E-value=0.00036  Score=60.25  Aligned_cols=47  Identities=23%  Similarity=0.588  Sum_probs=43.4

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++.++++++++.++.++|.+.+.+.+||+|++|+++|+||+.|+.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~   48 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDF   48 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence            45678999999999999999999999999988999999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.45  E-value=0.00042  Score=58.36  Aligned_cols=48  Identities=25%  Similarity=0.377  Sum_probs=43.9

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .+.++++++++.++.+.|.+.+.+.++|+|++|+++|++|.+|+++..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~   50 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRAL   50 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHH
Confidence            467899999999999999999999999999899999999999998654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.45  E-value=0.00029  Score=60.28  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=44.7

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRV  464 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~  464 (482)
                      +++.++++++++.++.++|.+.+.+.+||+|++ |+++|+|+++|++++..
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~   51 (125)
T cd04631           1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG   51 (125)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence            356789999999999999999999999999987 99999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.44  E-value=0.00036  Score=58.90  Aligned_cols=48  Identities=15%  Similarity=0.378  Sum_probs=43.9

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~  463 (482)
                      ++.++++++++.++.+.|++.+.+++||+|++ ++++|++|.+|++++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~   50 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV   50 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence            56789999999999999999999999999987 8999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.44  E-value=0.00037  Score=58.54  Aligned_cols=47  Identities=32%  Similarity=0.483  Sum_probs=43.7

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +|+++.+++++.++.+.|.+.+.+++||+|++|+++|++|++|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~   48 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY   48 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence            47889999999999999999999999999988999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.42  E-value=0.00028  Score=60.08  Aligned_cols=48  Identities=25%  Similarity=0.529  Sum_probs=43.9

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++.++++++++.++.+.|.+.+.+++||+|++|+++|+++++|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence            356789999999999999999999999999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.42  E-value=0.00038  Score=58.07  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++++++++++++.++.+.|.+.+.+++||+|+ |+++|+++++|+.+...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~   49 (111)
T cd04612           1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPA   49 (111)
T ss_pred             CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHh
Confidence            46788999999999999999999999999987 99999999999987543

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.41  E-value=0.00035  Score=58.63  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++++++++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~   49 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQL   49 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHh
Confidence            3567899999999999999999999999999899999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.40  E-value=0.00029  Score=61.30  Aligned_cols=49  Identities=27%  Similarity=0.396  Sum_probs=44.8

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++.++++++++.++.+.|.+.+.+++||+|++|+++|+|+++|+++...
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~   50 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY   50 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh
Confidence            5678999999999999999999999999998899999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.39  E-value=0.00037  Score=59.37  Aligned_cols=48  Identities=31%  Similarity=0.543  Sum_probs=44.3

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++++|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~   49 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAA   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHh
Confidence            467899999999999999999999999999889999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.39  E-value=0.00036  Score=58.35  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=43.7

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++.++.+++++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+..
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~   49 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL   49 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHH
Confidence            466789999999999999999999999999889999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.38  E-value=0.00032  Score=75.04  Aligned_cols=55  Identities=24%  Similarity=0.334  Sum_probs=51.6

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++.++|.++|.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+..
T Consensus        89 VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~  143 (479)
T PRK07807         89 VKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG  143 (479)
T ss_pred             cccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence            4778899999999999999999999999999999999999999999999999854

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.37  E-value=0.00042  Score=59.43  Aligned_cols=48  Identities=19%  Similarity=0.436  Sum_probs=43.5

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~  463 (482)
                      ++.++++++++.++.+.|.+.+.+++||+|++ |+++|+|+.+|+++..
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~   50 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFL   50 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHH
Confidence            45678999999999999999999999999987 9999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.36  E-value=0.00066  Score=55.90  Aligned_cols=50  Identities=22%  Similarity=0.420  Sum_probs=45.1

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHh
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~  465 (482)
                      ++.++++++++.++.+.|.+.+.+++||+|++++++|+++++|+++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~   51 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE   51 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh
Confidence            46778999999999999999999999999988999999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.35  E-value=0.00053  Score=58.21  Aligned_cols=48  Identities=25%  Similarity=0.524  Sum_probs=44.0

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++.++++++++.++.+.|.+.+.+++||+|++|+++|+|+.+|+.+..
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~   49 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS   49 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence            467899999999999999999999999999889999999999998754

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.35  E-value=0.00064  Score=56.74  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=43.6

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++++++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~   48 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAI   48 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHH
Confidence            35678999999999999999999999999987 9999999999999764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.33  E-value=0.0005  Score=57.44  Aligned_cols=47  Identities=26%  Similarity=0.347  Sum_probs=43.3

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++.+++++++++++.+.|.+.+.+.+||+|++|+++|+|+++|++..
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   49 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK   49 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence            56789999999999999999999999999989999999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.33  E-value=0.00069  Score=56.62  Aligned_cols=49  Identities=18%  Similarity=0.384  Sum_probs=44.7

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~  464 (482)
                      +..++++++++.++.+.|.+.+...+||+|++ |+++|++|.+|+++...
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~   51 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA   51 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence            46789999999999999999999999999988 99999999999998653

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.31  E-value=0.00073  Score=56.48  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=43.4

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++.++++++++.++.+.|.+.+.+++||+|+ |+++|+|+++|+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~   49 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKAL   49 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHH
Confidence            45678999999999999999999999999987 9999999999998754

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.31  E-value=0.00059  Score=56.67  Aligned_cols=47  Identities=26%  Similarity=0.402  Sum_probs=43.1

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++.++++++++.++.+.|.+.+.+++||+|+ |+++|++|++|+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~   48 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDAL   48 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHH
Confidence            4678999999999999999999999999987 9999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.29  E-value=0.00031  Score=74.44  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=56.1

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~  467 (482)
                      .+.+.++.+|++|++.+|+.+|...|.+.|...+.|+|++++..||||++|+.+....+.
T Consensus       150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g  209 (610)
T COG2905         150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG  209 (610)
T ss_pred             HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC
Confidence            688899999999999999999999999999999999999999999999999999877643

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.28  E-value=0.00066  Score=57.45  Aligned_cols=48  Identities=31%  Similarity=0.518  Sum_probs=43.6

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++.++.+++++.++.+.|.+.+..++||+|+ |+++|+++++|+.+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~   49 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASP   49 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhh
Confidence            5678999999999999999999999999987 99999999999987643

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.27  E-value=0.00078  Score=57.40  Aligned_cols=47  Identities=26%  Similarity=0.450  Sum_probs=42.9

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++++++++++.++.+.|.+.+..++||+|+ |+++|++|++|+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~   48 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAI   48 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHH
Confidence            5678999999999999999999999999986 9999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.26  E-value=0.00096  Score=55.87  Aligned_cols=47  Identities=32%  Similarity=0.481  Sum_probs=42.4

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++++++++++.++.+.|.+.+.+.+||+|+ |+++|+||.+|++...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~   48 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRV   48 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHH
Confidence            5678999999999999999999999999987 9999999999998643

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.25  E-value=0.00093  Score=55.66  Aligned_cols=48  Identities=23%  Similarity=0.395  Sum_probs=43.0

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +.+++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+.+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~   49 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLA   49 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHh
Confidence            4567899999999999999999999999986 89999999999997654

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.23  E-value=0.00066  Score=71.49  Aligned_cols=57  Identities=18%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~  463 (482)
                      ..++++|++  ++++++.+++++++.+.+.+.+++++||.+++ ++++|||+.+|++.+.
T Consensus       191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~  250 (408)
T TIGR03520       191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL  250 (408)
T ss_pred             CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh
Confidence            479999997  68999999999999999999999999999764 6899999999999753

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.20  E-value=0.00095  Score=55.87  Aligned_cols=46  Identities=20%  Similarity=0.400  Sum_probs=42.1

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++.++++++++.++.+.|.+.+.+.+||+|+ |+++|+++++|++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~   46 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVV   46 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHH
Confidence            35778999999999999999999999999987 99999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.20  E-value=0.001  Score=55.51  Aligned_cols=47  Identities=21%  Similarity=0.461  Sum_probs=42.8

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|+++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~   47 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNR   47 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHH
Confidence            35778999999999999999999999999986 999999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.19  E-value=0.00074  Score=56.91  Aligned_cols=42  Identities=14%  Similarity=0.361  Sum_probs=36.9

Q ss_pred             ccchhhcccCCeeEecCC--CCHHHHHHHHHhCCCCeeeEecCC
Q psy15912        212 NITARIVKSHPVICLRPL--ETVGNIIDVLKATSHNGFPIVDVE  253 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~--~~i~~~~~~l~~~~~~~fPVVd~~  253 (482)
                      ..++.++|.+++.++.++  +++.++++.|.++....+||+|++
T Consensus        57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~  100 (115)
T cd04620          57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ  100 (115)
T ss_pred             ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC
Confidence            356889999888899887  689999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.18  E-value=0.00088  Score=56.03  Aligned_cols=57  Identities=23%  Similarity=0.370  Sum_probs=50.9

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++++|.+++.++.+++++.++++.+.+.+...+||+|++                                      
T Consensus        52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------------------------------------   93 (109)
T cd04606          52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEE--------------------------------------   93 (109)
T ss_pred             cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC--------------------------------------
Confidence            356889998899999999999999999999998999999875                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHH
Q psy15912        292 RKESPGRLVGLILRSQLIIL  311 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~  311 (482)
                           ++++|+|+.+|++++
T Consensus        94 -----~~~~Gvit~~dll~~  108 (109)
T cd04606          94 -----GRLVGIITVDDVIDV  108 (109)
T ss_pred             -----CcEEEEEEhHHhhhh
Confidence                 689999999998764

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.18  E-value=0.00077  Score=59.81  Aligned_cols=49  Identities=16%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++++++++++++.++.+.|.+.+...+||+|+ ++++|++|++|+++...
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~   49 (143)
T cd04634           1 KNPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV   49 (143)
T ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHH
Confidence            35788999999999999999999999999987 99999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.17  E-value=0.0013  Score=55.08  Aligned_cols=47  Identities=30%  Similarity=0.461  Sum_probs=42.9

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .++++++++++.++.+.|.+.+.+.++|+|+ |+++|+++.+|+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~   48 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAV   48 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHH
Confidence            5678999999999999999999999999987 8999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.17  E-value=0.00085  Score=67.47  Aligned_cols=57  Identities=14%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~  463 (482)
                      ..++++|++  ...+++++++++++.+.+++.+..++||+|++ ++++|+|+.+|++.+.
T Consensus        67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~  126 (292)
T PRK15094         67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM  126 (292)
T ss_pred             CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence            379999998  68899999999999999999999999999876 7999999999999654

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.14  E-value=0.0011  Score=54.60  Aligned_cols=46  Identities=26%  Similarity=0.473  Sum_probs=42.0

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++++++++++.++.+.|.+.+.+.+||+| +++++|+++.+|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~   47 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA   47 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence            567899999999999999999999999998 6899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764|consensus

Probab=97.13  E-value=0.0022  Score=66.83  Aligned_cols=48  Identities=21%  Similarity=0.307  Sum_probs=44.7

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +...+.+++++.+|+++|+..++..+||||++|+.+|++++.|+....
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~  285 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA  285 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence            577899999999999999999999999999999999999999998653

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.11  E-value=0.0011  Score=56.11  Aligned_cols=47  Identities=26%  Similarity=0.360  Sum_probs=42.0

Q ss_pred             CceeeeCCCCHHHHHHHHHHcC-CCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALG-LRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~-lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++++++++++.++.+.|++.+ ...+||+|+ |+++|+|+.+|+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~   49 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELL   49 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHH
Confidence            4567899999999999998887 889999998 9999999999998653

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.10  E-value=0.0011  Score=55.41  Aligned_cols=40  Identities=15%  Similarity=0.275  Sum_probs=36.8

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV  252 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~  252 (482)
                      .++.++|.+++.++.+++++.++++.|.+++...+||+|+
T Consensus        58 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~   97 (112)
T cd04625          58 TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG   97 (112)
T ss_pred             CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC
Confidence            4689999998899999999999999999999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.09  E-value=0.0011  Score=55.51  Aligned_cols=41  Identities=12%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  253 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~  253 (482)
                      .++.++|.+++.++++++++.++++.+..+....+||++++
T Consensus        59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~   99 (114)
T cd04604          59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN   99 (114)
T ss_pred             CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999999999988999999865

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.08  E-value=0.001  Score=70.98  Aligned_cols=55  Identities=22%  Similarity=0.442  Sum_probs=50.7

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC---CeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN---NHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~---g~lvGIITr~DLl~~  462 (482)
                      .+++.|.+++.++++++++.++.++|.+.+.+.+||+|++   ++++|+||++|++..
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~  138 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV  138 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence            5677888999999999999999999999999999999987   799999999999753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.07  E-value=0.0015  Score=54.06  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=37.4

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVE  253 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~  253 (482)
                      ..++++|.+++.++.+++++.++++.|.+++.+.+||++++
T Consensus        52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~   92 (107)
T cd04610          52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN   92 (107)
T ss_pred             ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC
Confidence            35889999999999999999999999999998999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.07  E-value=0.0015  Score=55.56  Aligned_cols=47  Identities=19%  Similarity=0.347  Sum_probs=42.7

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++++.+++++.++.+.|.+.+.+.+||+|+ |+++|++|++|+.+..
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~   48 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADAL   48 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhh
Confidence            5678999999999999999999999999986 9999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.05  E-value=0.0022  Score=53.85  Aligned_cols=55  Identities=27%  Similarity=0.397  Sum_probs=48.4

Q ss_pred             ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912        412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       412 im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~  467 (482)
                      +|.+.+.++.++.++.++...|.+.+...+||++ +.+++|+||..|++++.....
T Consensus         4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~   58 (117)
T COG0517           4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGG   58 (117)
T ss_pred             cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccC
Confidence            4558899999999999999999999999999996 448999999999999875443

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.04  E-value=0.0015  Score=55.21  Aligned_cols=46  Identities=15%  Similarity=0.393  Sum_probs=42.1

Q ss_pred             CceeeeCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHhHH
Q psy15912        416 SPFSVQDSTSLPRVFKLFRALGLRHVVVVNN---NNHVVGMITRKDLAR  461 (482)
Q Consensus       416 ~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~---~g~lvGIITr~DLl~  461 (482)
                      ++.++.+++++.++.+.|.+.+.+.+||+|+   +|+++|+|+.+|++.
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence            5678999999999999999999999999997   789999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.99  E-value=0.0017  Score=54.00  Aligned_cols=47  Identities=23%  Similarity=0.545  Sum_probs=42.9

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      +++.++++++++.++.+.|.+.+...+||+|++|+++|+++.+|+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~   48 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF   48 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee
Confidence            45778999999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.97  E-value=0.0024  Score=53.35  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=42.8

Q ss_pred             cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       415 ~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~   48 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKV   48 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            35678999999999999999999999999985 4999999999999754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=96.90  E-value=0.0026  Score=52.82  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=40.6

Q ss_pred             eeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       418 ~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      .++++++++.++.+.|.+.+...+||+|+ |+++|+++.+|+.+.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA   47 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence            46899999999999999999999999997 999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.89  E-value=0.0035  Score=43.16  Aligned_cols=47  Identities=32%  Similarity=0.639  Sum_probs=41.3

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912        223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL  302 (482)
Q Consensus       223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi  302 (482)
                      +.++.+.+++.++.+.+++.+++.+||++++                                           ++++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------------------------------------~~~~g~   38 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------------------------------------GRLVGI   38 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------------------------------------CeEEEE
Confidence            5678999999999999999999999999875                                           589999


Q ss_pred             EeHHHHHHHH
Q psy15912        303 ILRSQLIILI  312 (482)
Q Consensus       303 Is~~dL~~~l  312 (482)
                      ++..++...+
T Consensus        39 i~~~~l~~~~   48 (49)
T smart00116       39 VTRRDIIKAL   48 (49)
T ss_pred             EEHHHHHHhh
Confidence            9999987654

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.83  E-value=0.0025  Score=68.69  Aligned_cols=58  Identities=21%  Similarity=0.243  Sum_probs=52.5

Q ss_pred             ccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ..+++|+|++  +++++.+++++.+++++|.+++.+.+||||++                                    
T Consensus       160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~------------------------------------  203 (502)
T PRK07107        160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN------------------------------------  203 (502)
T ss_pred             CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence            4579999996  78999999999999999999999999999875                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHH
Q psy15912        290 ASRKESPGRLVGLILRSQLIILI  312 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l  312 (482)
                             ++++|+|+++|+++..
T Consensus       204 -------g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        204 -------GNLVYLVFRKDYDSHK  219 (502)
T ss_pred             -------CeEEEEEEhHHHHhcc
Confidence                   6899999999998754

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.82  E-value=0.0027  Score=67.93  Aligned_cols=59  Identities=19%  Similarity=0.284  Sum_probs=53.9

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      .+++++|+++++++++++++.+++++|.+++.+.+||||++                                       
T Consensus       146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~---------------------------------------  186 (475)
T TIGR01303       146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD---------------------------------------  186 (475)
T ss_pred             CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------------------------
Confidence            46899999999999999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHh
Q psy15912        293 KESPGRLVGLILRSQLIILIKH  314 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~  314 (482)
                          ++++|+|+++||++....
T Consensus       187 ----g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       187 ----GTLAGILTRTGALRATIY  204 (475)
T ss_pred             ----CeEEEEEEHHHHHHHHhC
Confidence                689999999999876654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.74  E-value=0.0027  Score=68.38  Aligned_cols=53  Identities=11%  Similarity=0.395  Sum_probs=48.3

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC---CeEEEEEeHHHhH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN---NHVVGMITRKDLA  460 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~---g~lvGIITr~DLl  460 (482)
                      ..++.|.++|+++++++++.++.++|++.+.+.+||+|++   ++++||||.+|+.
T Consensus        97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~  152 (495)
T PTZ00314         97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID  152 (495)
T ss_pred             ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence            3556788999999999999999999999999999999873   7999999999986

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.74  E-value=0.0031  Score=52.79  Aligned_cols=47  Identities=17%  Similarity=0.213  Sum_probs=42.4

Q ss_pred             ceeeeCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHhHHHH
Q psy15912        417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNN---NNHVVGMITRKDLARYR  463 (482)
Q Consensus       417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~---~g~lvGIITr~DLl~~~  463 (482)
                      ...+++++++.++.+.+.+.+.+.+||+|+   +|+++|+|+++|+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~   53 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL   53 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence            456899999999999999999999999998   69999999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.72  E-value=0.0048  Score=51.13  Aligned_cols=46  Identities=33%  Similarity=0.429  Sum_probs=41.4

Q ss_pred             ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ..++++++++.++...|.+.+...+||+|++++++|+++++|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~   48 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN   48 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence            4578889999999999999999999999988999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.71  E-value=0.0039  Score=67.29  Aligned_cols=61  Identities=18%  Similarity=0.240  Sum_probs=54.8

Q ss_pred             ccchhhcccCC--eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~~~--~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ..+++++|+++  ++++.+++++.+++++|.+++.+.+||||++                                    
T Consensus       162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~------------------------------------  205 (505)
T PLN02274        162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED------------------------------------  205 (505)
T ss_pred             CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence            45789999976  8899999999999999999999999999875                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                             ++++|+|+++|+.+.+..+
T Consensus       206 -------g~LvGvITr~DIlk~~~~p  224 (505)
T PLN02274        206 -------GELVDLVTRTDVKRVKGYP  224 (505)
T ss_pred             -------CeEEEEEEHHHHHHHhhCc
Confidence                   6899999999999887653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.68  E-value=0.006  Score=63.64  Aligned_cols=53  Identities=17%  Similarity=0.323  Sum_probs=43.9

Q ss_pred             cccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        409 LNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       409 v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +.+ +.....++++++++.+++..+.+.+. -++|+|+ |+++|+|++.++++...
T Consensus       328 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       328 VES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             hhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence            444 55667789999999999999888775 4888885 99999999999998653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=96.50  E-value=0.0066  Score=61.10  Aligned_cols=64  Identities=19%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      .....+...+|++++.++.+.++++.+.+.|--.++.-+||+|++                                   
T Consensus       245 ~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----------------------------------  289 (432)
T COG4109         245 KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----------------------------------  289 (432)
T ss_pred             CCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCC-----------------------------------
Confidence            345667889999999999999999999999999999999999987                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                              .+++|+|+|+|++..++..
T Consensus       290 --------~~llGiitR~dvlk~lq~~  308 (432)
T COG4109         290 --------NTLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             --------ceEEEEEEHHHHHHHHHHh
Confidence                    6899999999999988754

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.33  E-value=0.0073  Score=60.45  Aligned_cols=52  Identities=23%  Similarity=0.344  Sum_probs=44.2

Q ss_pred             ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       412 im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .+.+.+.++.+++++.+.....++.+. .++|||++++++|+|++..++.+..
T Consensus       332 ~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            355667789999999999998887664 7889999999999999999998753

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=95.87  E-value=0.015  Score=61.72  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ...++|+|.++++++.+.++.+++.++++++..-..||||++                                      
T Consensus       195 ~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~--------------------------------------  236 (451)
T COG2239         195 DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDED--------------------------------------  236 (451)
T ss_pred             HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCC--------------------------------------
Confidence            457889999999999999999999999999999999999987                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhh
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKI  316 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~  316 (482)
                           ++++|+|+..|++..+....
T Consensus       237 -----~~LiG~itiDDiidvi~eEa  256 (451)
T COG2239         237 -----NRLIGIITIDDIIDVIEEEA  256 (451)
T ss_pred             -----CceeeeeeHHHHHHHHHHHH
Confidence                 69999999999998887653

>PRK11573 hypothetical protein; Provisional

Probab=95.35  E-value=0.04  Score=58.17  Aligned_cols=57  Identities=9%  Similarity=0.194  Sum_probs=50.4

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~  463 (482)
                      ..++++|.+  ....++.+++++++.+.+++.++.++||.+++ +.++|+|..||++.+.
T Consensus       187 ~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~  246 (413)
T PRK11573        187 VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM  246 (413)
T ss_pred             CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence            378999987  45789999999999999999999999999654 6899999999999753

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=94.96  E-value=0.061  Score=55.80  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      ++.+.|...+.++.+++++.+++..+.++.+. +||+|++                                        
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~----------------------------------------  341 (363)
T TIGR01186       303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED----------------------------------------  341 (363)
T ss_pred             chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC----------------------------------------
Confidence            46677888888999999999999999998888 9999986                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhh
Q psy15912        294 ESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                         |+++|+|++.+++..+...
T Consensus       342 ---~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       342 ---QRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             ---CcEEEEEEHHHHHHHHHhh
Confidence               7999999999999888654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=94.63  E-value=0.077  Score=56.33  Aligned_cols=60  Identities=15%  Similarity=0.261  Sum_probs=52.4

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHhHHHHHhh
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVN-NNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD-~~g~lvGIITr~DLl~~~~~~  466 (482)
                      ..++++|++  +...++.+.+++++.+.+++.++.++||.| +.+.++|+|..|||+.+....
T Consensus       206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            479999987  457788899999999999999999999998 456899999999999976544

>KOG0474|consensus

Probab=94.52  E-value=0.015  Score=62.53  Aligned_cols=120  Identities=15%  Similarity=0.050  Sum_probs=86.9

Q ss_pred             ccCCCchhhhhhhccccccccC------CCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHH-------HhcCCCC
Q psy15912         64 VSGGGMPEKYDFLSKDNVWKSN------GKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQ-------SIFPEAT  128 (482)
Q Consensus        64 ~~g~G~~~~~~~l~~~~~~~~~------~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~-------~~~~~~~  128 (482)
                      .-|.|-+.+-.-|||--....+      .|+  ...+++.|...|--.|.+-.||+.++.+++.=.       .||+...
T Consensus       163 AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~Fr  242 (762)
T KOG0474|consen  163 AAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFR  242 (762)
T ss_pred             ccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhc
Confidence            3466777999999998555553      555  899999999999999999999999999986311       1121110


Q ss_pred             -CCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCch---hhHHHHHHHHHHHHHhh
Q psy15912        129 -WIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNIS---FGLPLMLTLITAKWIGD  183 (482)
Q Consensus       129 -~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~---~~~Pl~ia~~ia~~v~~  183 (482)
                       .-+---+..+|+||-.+++.|||+..+++.+|-..+++   ++.=++++..++.++-+
T Consensus       243 nDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~  301 (762)
T KOG0474|consen  243 NDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR  301 (762)
T ss_pred             ccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence             02456788999999999999999999999888766544   44445555555444444

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=93.10  E-value=0.23  Score=52.23  Aligned_cols=58  Identities=12%  Similarity=0.275  Sum_probs=49.0

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      .+++.|..++.++.+++++.+++..+.++.+. +||||++                                        
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~----------------------------------------  376 (400)
T PRK10070        338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDED----------------------------------------  376 (400)
T ss_pred             chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCC----------------------------------------
Confidence            35566777788999999999999998886655 9999976                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhh
Q psy15912        294 ESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                         |+++|+|++.+++..+...
T Consensus       377 ---~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        377 ---QQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             ---CcEEEEEEHHHHHHHHHhc
Confidence               7999999999999988654

>KOG2550|consensus

Probab=92.26  E-value=0.18  Score=51.92  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=52.0

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..-+.|+|+++.++.+...++.++-++|++.+-..+||||++                                      
T Consensus       170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~--------------------------------------  211 (503)
T KOG2550|consen  170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDK--------------------------------------  211 (503)
T ss_pred             cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccC--------------------------------------
Confidence            456789999988999999999999999999999999999986                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHH
Q psy15912        292 RKESPGRLVGLILRSQLIILI  312 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l  312 (482)
                           ++++-++++.||.+.-
T Consensus       212 -----gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  212 -----GELVAMLSRTDLMKNR  227 (503)
T ss_pred             -----Cceeeeeehhhhhhhc
Confidence                 7999999999987653

>KOG0475|consensus

Probab=91.43  E-value=0.11  Score=56.17  Aligned_cols=97  Identities=21%  Similarity=0.122  Sum_probs=68.5

Q ss_pred             cCCCchhhhhhhcccccccc------CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHH
Q psy15912         65 SGGGMPEKYDFLSKDNVWKS------NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYA  136 (482)
Q Consensus        65 ~g~G~~~~~~~l~~~~~~~~------~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a  136 (482)
                      -|.|-+++--.++|-.--..      +.|-  .-++++||.|-|--.|+.-++.++|.++..++...--+.  .-.--+.
T Consensus       156 ~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e--~~~reil  233 (696)
T KOG0475|consen  156 CGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNE--AKKREIL  233 (696)
T ss_pred             hcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccch--hHHHHHH
Confidence            46666699889998854222      2332  788999999999999999999999999988764432111  1122233


Q ss_pred             HHHHHHHhhhhhchhHHHHHHHHHhhC
Q psy15912        137 LIGAAAQLGGVVRMTISLTIILIEATG  163 (482)
Q Consensus       137 ~vG~aa~~~g~~~~p~s~~vi~~Eltg  163 (482)
                      .+.+|+-.+.+.+||+..+++.+|-.-
T Consensus       234 sAaaAaGvavaFgAPIGGVlFslEev~  260 (696)
T KOG0475|consen  234 SAAAAAGVAVAFGAPIGGVLFSLEEVS  260 (696)
T ss_pred             HHHhhccchhhcCCccceeeeehhhhh
Confidence            344555556778999999999888765

>KOG0476|consensus

Probab=89.09  E-value=0.48  Score=52.46  Aligned_cols=120  Identities=16%  Similarity=0.081  Sum_probs=81.0

Q ss_pred             hccccccCCCchhhhhhhccc-----ccccc-CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy15912         59 TYGVSVSGGGMPEKYDFLSKD-----NVWKS-NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWI  130 (482)
Q Consensus        59 ~~~~~~~g~G~~~~~~~l~~~-----~~~~~-~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~  130 (482)
                      ..+-+.-|.|-+.+--+|.|=     ++..- ++|.  .++|+|||..-|--.|-.-|+++....++.+.+-.+.+. +.
T Consensus       160 ~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~-~e  238 (931)
T KOG0476|consen  160 YIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGF-FE  238 (931)
T ss_pred             eeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhcccc-cc
Confidence            345566677888888888775     23332 3565  899999999999999999999999999998875333221 11


Q ss_pred             ch---hHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCc----hhhHHHHHHHHHHH
Q psy15912        131 DP---GKYALIGAAAQLGGVVRMTISLTIILIEATGNI----SFGLPLMLTLITAK  179 (482)
Q Consensus       131 ~~---~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~----~~~~Pl~ia~~ia~  179 (482)
                      +.   .-...+|.|.-.|.+.-+|++++++-+|.|..|    +|+-..+.+++.|.
T Consensus       239 nesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~  294 (931)
T KOG0476|consen  239 NESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAF  294 (931)
T ss_pred             CcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHH
Confidence            21   223344445555667778999999999999733    34445555554443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=88.35  E-value=0.83  Score=44.88  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       422 ~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ..+...++...|...+...+||||++|+++|.||+.|++.+
T Consensus       268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         268 EGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            34445557888888999999999999999999999999864

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=87.49  E-value=0.31  Score=46.91  Aligned_cols=58  Identities=16%  Similarity=0.302  Sum_probs=50.2

Q ss_pred             cccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g~lvGIITr~DLl~~~~  464 (482)
                      +.|+++|-+.  -.++..+.++.+....+.+..+.++||+.+ +..+.||+--|||+++..
T Consensus        67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~  127 (293)
T COG4535          67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR  127 (293)
T ss_pred             hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc
Confidence            3688999763  478899999999999999999999999954 458999999999999854

>KOG2118|consensus

Probab=81.31  E-value=2.5  Score=45.78  Aligned_cols=52  Identities=19%  Similarity=0.149  Sum_probs=42.6

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHh
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL  459 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DL  459 (482)
                      .+++..+.....-+++++++.+..+.|++... |+.|+.+...-++++|..|+
T Consensus       273 ~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v~~~~~~~~~~~l~~~  324 (498)
T KOG2118|consen  273 LPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVVRNGHVDIFVLTLEDL  324 (498)
T ss_pred             ccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEEecCCcceeeEeccch
Confidence            36788888888889999999999999987665 55555556678999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	482
3org_A	632	Crystal Structure Of A Eukaryotic Clc Transporter L		6e-14
3ejy_A	473	Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTE		1e-04
2ht2_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		1e-04
1kpk_A	473	Crystal Structure Of The Clc Chloride Channel From		1e-04
2exy_A	473	Crystal Structure Of The E148q Mutant Of Ecclc, Fab		1e-04
2htk_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		1e-04
3ejz_A	473	Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, C		1e-04
2ht3_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		1e-04
2ez0_A	473	Crystal Structure Of The S107aE148QY445A MUTANT OF		1e-04
2htl_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		1e-04
3det_A	473	Structure Of The E418a, Y445a Doubly Ungated Mutant		1e-04
1ots_A	465	Structure Of The Escherichia Coli Clc Chloride Chan		1e-04
2fec_A	465	Structure Of The E203q Mutant Of The Cl-H+ EXCHANGE		1e-04
1otu_A	465	Structure Of The Escherichia Coli Clc Chloride Chan		1e-04
4ftp_A	465	Structure Of The E202y Mutant Of The Cl-H+ ANTIPORT		2e-04
1ott_A	465	Structure Of The Escherichia Coli Clc Chloride Chan		2e-04
2ht4_A	473	Structure Of The Escherichia Coli Clc Chloride Chan		2e-04
3nmo_A	465	Crystal Structure Of An Engineered Monomeric Clc-Ec		2e-04
4ene_A	446	Structure Of The N- And C-Terminal Trimmed Clc-Ec1		2e-04
2hlf_A	444	Structure Of The Escherichis Coli Clc Chloride Chan		2e-04
2r9h_A	444	Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Com		2e-04
1kpl_A	473	Crystal Structure Of The Clc Chloride Channel From		3e-04

>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter Length = 632

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Query: 90  SLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVR 149
           +LS  L    GVF+P  L GA +GRL+   ++ +F  A  I PG YA++GAAA   GV R
Sbjct: 333 ALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNA--IVPGSYAVVGAAAFTAGVTR 390
Query: 150 MTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPL 209
             +S  +I+ E TG I   +P++++++ A  +G+ F   LY+  + +  +P +       
Sbjct: 391 -ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDR 449
Query: 210 SSNITARIVKSHPV 223
           S  +TAR +  HP+
Sbjct: 450 SPEMTAREIM-HPI 462

>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC- Ec1 Length = 473

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445h Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli Length = 473

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab Complexed In Absence Of Bound Ions Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445a Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1 Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445l Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC, In Complex With A Fab Fragment Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445f Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of E.Coli Clc_ec1, Cl-H+ ANTIPORTER Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And Fab Complex Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC- Ec1 From E.Coli Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel E148q Mutant And Fab Complex Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER CLC-Ec1 From E.Coli Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel E148a Mutant And Fab Complex Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel Y445w Mutant And Fab Complex Length = 473

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLILPMIITGLGATLLAQF 438

>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+ Transporter Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 354 GGIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAGTFAIAGMGALLAASIRAPLTGIILV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 413 LEMTDNYQLWLPMIITGLGATLLAQF 438

>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+ ANTIPORTER And Fab Complex Length = 446

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 339 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 397
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 398 LEMTDNYQLILPMIITGLGATLLAQF 423

>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel Y445e Mutant And Fab Complex Length = 444

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 338 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 396
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 397 LEMTDNYQLILPMIITGLGATLLAQF 422

>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex With Fab Length = 444

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I++
Sbjct: 338 GGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIILV 396
Query: 159 IEATGNISFGLPLMLTLITAKWIGDF 184
           +E T N    LP+++T + A  +  F
Sbjct: 397 LEMTDNYQLILPMIITGLGATLLAQF 422

>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S. Typhimurium Length = 473

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 99  GGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIIL 158
           GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A +   VR  ++  +++
Sbjct: 354 GGIFAPMLALGTLLGTAFGMAAAVLFPQ-YHLEAGTFAIAGMGALMAASVRAPLTGIVLV 412
Query: 159 IEATGNISFGLPLMLTLITAKWIGDFF 185
           +E T N    LP+++T + A  +  F 
Sbjct: 413 LEMTDNYQLILPMIITCLGATLLAQFL 439

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	482
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	5e-68
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-23
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	5e-15
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	1e-14
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	6e-14
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-08
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	9e-08
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-07
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-05
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-10
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-06
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-09
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	8e-06
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-07
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-09
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	6e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	6e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-08
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	7e-05
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-08
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	4e-08
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	6e-06
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-08
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-06
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-08
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-07
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-08
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-06
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-07
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	6e-07
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-07
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-07
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-06
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	3e-07
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-07
4fry_A	157	Putative signal-transduction protein with CBS DOM;	7e-07
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	8e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-05
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-06
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	6e-04
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-06
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-06
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	3e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	6e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	7e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-05
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	8e-05
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-04
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score =  228 bits (583), Expect = 5e-68
 Identities = 76/428 (17%), Positives = 138/428 (32%), Gaps = 122/428 (28%)

Query: 38  GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSD 97
             FG   L +  +  F+L   + G+ +  G                              
Sbjct: 314 DHFGWTELILMPIIKFILVALSIGLPLPAG------------------------------ 343

Query: 98  SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
              VF+P  L GA +GRL+   ++ +F  A  I PG YA++GAAA   GV R  +S  +I
Sbjct: 344 ---VFVPSFLIGAGFGRLYGELMRVVFGNA--IVPGSYAVVGAAAFTAGVTR-ALSCAVI 397

Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARI 217
           + E TG I   +P++++++ A  +G+ F   LY+  + +  +P +       S  +TAR 
Sbjct: 398 IFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTARE 457

Query: 218 V--KSHPVICLRPLETVGNIIDVL-KATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSH 274
           +         L P     +I  +L K  +   FP++D                       
Sbjct: 458 IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVID----------------------- 494

Query: 275 KGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFH 334
                               + G L+G I R +++  ++H +    +     +    +  
Sbjct: 495 --------------------ANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDA 534

Query: 335 AEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVN 394
           A+                                           S             +
Sbjct: 535 ADLSENIEGLVD--------------------------ETPSGEHSSKGKRTATVLEPTS 568

Query: 395 DLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMI 454
            LVV  +     V                + + ++  LF  L    + V      +VG++
Sbjct: 569 SLVVPCDVSPIVV-------------TSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIV 614

Query: 455 TRKDLARY 462
            R+D+A  
Sbjct: 615 EREDVAYG 622

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 95.7 bits (238), Expect = 3e-23
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
            RLVG +LR  LII I++   K++        S   F    P  P              T
Sbjct: 60  QRLVGFVLRRDLIISIENARKKQDGVVST---SIIYFTEHSPPLPPYTPP---------T 107

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
           +KL   ++ SPF+V D T +  V  +FR LGLR  +V  +N  ++G+IT+KD+ ++
Sbjct: 108 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT-HNGRLLGIITKKDVLKH 162

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 98  SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
            GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I+
Sbjct: 353 PGGIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAGTFAIAGMGALLAASIRAPLTGIIL 411

Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD 191
           ++E T N    LP+++T + A  +  F   + LY 
Sbjct: 412 VLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYS 446

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 98  SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
            GG+F P L   +      +     +FP     +P   A+ G  A +   VR  ++  ++
Sbjct: 345 IGGIFAPMLGIASIVSVAMARHFHLLFPSQI-PEPAVMAIAGMGALVAATVRAPLTAILL 403

Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYD 191
            IE T N    LPL++T + A  + +    + +Y 
Sbjct: 404 TIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYT 438

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 70.9 bits (172), Expect = 6e-14
 Identities = 32/263 (12%), Positives = 70/263 (26%), Gaps = 20/263 (7%)

Query: 200 PLLAWDPPPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHS 259
           P L+W       NI    +    V  +    T G+++ VL+ T    FP VD        
Sbjct: 1   PELSWSSA-NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD-------- 51

Query: 260 SDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKE 319
                 ++       + +              +  +           +       +    
Sbjct: 52  ---TPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESS 108

Query: 320 NQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLS 379
                 +    +        + +   P     +           ++  ++       +  
Sbjct: 109 FAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE 168

Query: 380 SEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLR 439
             +   E  R+                      ++ SPF + + TSL +   LF  LGL 
Sbjct: 169 EMLTLEEIYRWEQ-------REKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLD 221

Query: 440 HVVVVNNNNHVVGMITRKDLARY 462
              V +    +VG++   ++   
Sbjct: 222 RAYVTSMGK-LVGVVALAEIQAA 243

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 42/270 (15%), Positives = 82/270 (30%), Gaps = 89/270 (32%)

Query: 210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAG 269
           + N   R +    VI L+    +   I+     +  G PIV+ E                
Sbjct: 81  AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE---------------- 124

Query: 270 STDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQ-------- 321
                                       +L+ LI    +I  +  KI +           
Sbjct: 125 ---------------------------NQLISLITERDVIRALLDKIDENEVIDDYITRD 157

Query: 322 ---NWPDDQLSSEIFH--AEYRCRPRIWSP----GRLVGLILRSQLIILIKHKIYKENQN 372
                P ++L  ++         R R+  P    GRLVG+I  +  I L+       +  
Sbjct: 158 VIVATPGERLK-DVARTMVRNGFR-RL--PVVSEGRLVGIITSTDFIKLLGSDWAFNHM- 212

Query: 373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKL 432
                        +      + ++ + E            M     + ++   L ++ ++
Sbjct: 213 -------------QTGNVREITNVRMEE-----------IMKRDVITAKEGDKLKKIAEI 248

Query: 433 FRALGLRHVVVVNNNNHVVGMITRKDLARY 462
                +  + VV+ N  + G+IT KD+ +Y
Sbjct: 249 MVTNDIGALPVVDENLRIKGIITEKDVLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 13/130 (10%), Positives = 45/130 (34%), Gaps = 22/130 (16%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
            ++VG+I    ++  +                          +Y  + +        +  
Sbjct: 46  NKVVGIITSMDIVDFM----------------------GGGSKYNLIREKHERNFLAAIN 83

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
             +   M  +  +++++  +    + F    +    +VN+ N ++ +IT +D+ R  + +
Sbjct: 84  EPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK 143

Query: 467 HGGRMGLEEL 476
                 +++ 
Sbjct: 144 IDENEVIDDY 153

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 52.5 bits (126), Expect = 9e-08
 Identities = 29/273 (10%), Positives = 67/273 (24%), Gaps = 103/273 (37%)

Query: 216 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHK 275
           +I ++  ++ + P  T+   +  +    +   P+V+                        
Sbjct: 7   KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN------------------------ 42

Query: 276 GDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHA 335
                                 ++VG+I    ++  +             +         
Sbjct: 43  ------------------AGNNKVVGIITSMDIVDFMGGGSKYNLIREKHE--------- 75

Query: 336 EYRCRPRIWSPGRLVGLILRSQLI-------------ILIKHKIYKENQNWPDDQLSSEI 382
               R  + +    V  I+   +I               +   +                
Sbjct: 76  ----RNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNV---------------- 115

Query: 383 FHAEYPRYPSVNDL-----VVSEND--------RSFTVKLNLFMNTSPFSVQDSTSLPRV 429
                   P VND      +++E D              ++ ++            L  V
Sbjct: 116 -----GGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDV 170

Query: 430 FKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
            +     G R + VV +   +VG+IT  D  + 
Sbjct: 171 ARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKL 202

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN-NNNHVVGMITRKDLARY 462
           F   + +  N    +V  +T++ +          R + VVN  NN VVG+IT  D+  +
Sbjct: 2   FVRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDF 60

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 28/265 (10%), Positives = 76/265 (28%), Gaps = 86/265 (32%)

Query: 211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGS 270
           S        +   + +         I+++   +    P+VD+                  
Sbjct: 91  STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN----------------- 133

Query: 271 TDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQN-------- 322
                                      + VG++   + ++L K                 
Sbjct: 134 --------------------------DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQ 167

Query: 323 --WPDDQLSS--EIFHAE-YRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQ 377
             + + +L    ++     +R  P I    ++VG++     I  +   + K + ++   +
Sbjct: 168 TIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGK 227

Query: 378 LSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALG 437
           +  ++                              M T+  ++ +  S+ R         
Sbjct: 228 VVKDV------------------------------MVTNLVTIDELASVNRAAAEMIVKR 257

Query: 438 LRHVVVVNNNNHVVGMITRKDLARY 462
           +  ++++N +N + G+IT +DL   
Sbjct: 258 IGSLLILNKDNTIRGIITERDLLIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 12/116 (10%), Positives = 36/116 (31%), Gaps = 26/116 (22%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
            ++ GL+    L+  ++                             ++   + +      
Sbjct: 59  EKIEGLLTTRDLLSTVESYCKDSCSQG---------------DLYHISTTPIID------ 97

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
                +M  +P +V +++       +        + VV+ N+  VG++T ++    
Sbjct: 98  -----YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 148

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 399 SENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKD 458
            EN     + +   M  +P  +     L   FK     G+  ++V   N  + G++T +D
Sbjct: 12  HENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVA--NEKIEGLLTTRD 69

Query: 459 LARY 462
           L   
Sbjct: 70  LLST 73

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 347 GRLVGLILRSQLI--ILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRS 404
             LVG++    L+    I  +   +   +PD   + + F+            VV +    
Sbjct: 47  WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGD---- 102

Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
                   M  SP  V+DST+L    +L      R + VV+ +  ++G++TR ++ R 
Sbjct: 103 -------LMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRA 153

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 412 FM--NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
           FM    +   V+ STS+    +L     +  + V+++N  +VG+++  DL       
Sbjct: 9   FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSIS 65

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 395 DLV-VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
           D+V      +S   K   FM  S  ++++ + +     L R   +RH+ VV++  ++ G+
Sbjct: 54  DIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGI 113

Query: 454 ITRKDLARY 462
           I+ +D+ R 
Sbjct: 114 ISIRDITRA 122

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 44.1 bits (105), Expect = 8e-06
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
           +M T   SV     L  + K+     +  V+VV+ N   VG+IT +D+ +
Sbjct: 9   YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIVK 57

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
            +  N +   V + L M      V+    +  V       GL    VV++   VVG++T 
Sbjct: 65  FIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTL 124

Query: 457 KDLARY 462
            DL+RY
Sbjct: 125 TDLSRY 130

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 12/56 (21%), Positives = 31/56 (55%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH 467
            MN++  +V  +T++    K+     L  +VV ++N + VG+++ + + +  + R+
Sbjct: 14  IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRN 69

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 27/115 (23%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
             LVG++ R+QL+  ++      ++     Q   +I     P  P               
Sbjct: 56  QILVGIVQRAQLVQALQA--EPPSRAPGHQQCLQDILARGCPTEPV-------------- 99

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
                       ++   T+L +   LF+ L L+ + V  +    VG ++  ++ +
Sbjct: 100 ----------TLTLFSETTLHQAQNLFKLLNLQSLFVT-SRGRAVGCVSWVEMKK 143

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN--NNHVVGMITRKDLARYRVWRHGG 469
           FMN S  ++   T L  V K+  +  +    +V +  +  +VG++ R  L +        
Sbjct: 18  FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS 77

Query: 470 RMGLEELKISSTL 482
           R    +  +   L
Sbjct: 78  RAPGHQQCLQDIL 90

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 395 DLV-VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
           D++                   SP +V D+  +    +  R   +RHVVVVN N  +VG+
Sbjct: 58  DILRAVAQRLDLDGPAMPIA-NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGV 116

Query: 454 ITRKDLARYRV 464
           ++ +DL   R 
Sbjct: 117 LSIRDLCFERA 127

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 8/60 (13%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 404 SFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVV--NNNNHVVGMITRKDLAR 461
           +  ++ +  +   P S+ ++ ++  V        +   V+   +N    V +++ +D+ R
Sbjct: 2   AMAIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILR 61

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRM 471
            ++  P  V++ T +  +        +   V V  +N +VGMI    L +   +   G +
Sbjct: 21  LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFI 80

Query: 472 GLEE 475
             EE
Sbjct: 81  PKEE 84

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 22/115 (19%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
            +LVG+I    L+            ++       E+  +   R   +     SE      
Sbjct: 57  NKLVGMIPVMHLL-------KVSGFHFFGFIPKEELIRSSMKR---LIAKNASE------ 100

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
                 M   P  V   T L    KL     ++ + VV+    +VG +   ++  
Sbjct: 101 -----IM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILL 149

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 397 VVSEND---RSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
           VV++ D         +   ++   F V +  ++     LF      ++ VV+    + G 
Sbjct: 59  VVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGA 118

Query: 454 ITRKDLARYR-----VWRHGGRMGLE 474
           ++  D          +   G R  + 
Sbjct: 119 VSLHDFLEALIEALAMDVPGIRFSVL 144

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
           ++      V++S ++       R       +V +   H  G++ ++DL
Sbjct: 18  WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL 65

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
            M   P ++  + +L     L  AL +RHV +V+ N  ++G+++++DL  
Sbjct: 10  MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA 59

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 389 RYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN 448
              S        +  +F   L   M+T   SV     L       +   +  + VV  + 
Sbjct: 60  AQESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD- 118

Query: 449 HVVGMITRKDLARY 462
            +VG+IT  D    
Sbjct: 119 VLVGIITDSDFVTI 132

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHG 468
            MN     V +  +L    +  R   +  + +  +++ + GM+T +D+   +    G
Sbjct: 13  IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI-KGLAAG 68

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
            ++      T         S + V  + S+  +  +     +R V V+ + + +VG++T 
Sbjct: 64  GLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVI-SEHRLVGIVTE 122

Query: 457 KDLARY 462
            D+AR+
Sbjct: 123 ADIARH 128

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 29/116 (25%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
           G L+ +     ++ LIK  IY +        LS  +  A   R      +          
Sbjct: 52  GYLINVYEAYDVLGLIKGGIYND--------LSLSVGEALMRRSDDFEGVYT-------- 95

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
                           +  L  +    R   +    VV++   +VG++T  D+ +Y
Sbjct: 96  -------------CTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY 138

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 9/52 (17%), Positives = 24/52 (46%)

Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
            LN+    +  S Q +T +  V ++     +  V +++ N +++ +    D+
Sbjct: 12  DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 63

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 20/170 (11%), Positives = 61/170 (35%), Gaps = 8/170 (4%)

Query: 297 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLI--L 354
            R  GL+  +  I +I++     ++    D+L  +      R           +     L
Sbjct: 74  SRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPL 133

Query: 355 RSQLIILIKHK-----IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKL 409
               + +++ +     +  +++    + + S +      ++ ++N              L
Sbjct: 134 FEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIP-IGDL 192

Query: 410 NLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
           N+    +  S Q +T +  V ++     +  V +++ N +++ +    D+
Sbjct: 193 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDV 242

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 31/249 (12%), Positives = 72/249 (28%), Gaps = 54/249 (21%)

Query: 218 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGD 277
           V       + P   +      +  +     P++D         +   +    S  +    
Sbjct: 119 VDQLDTASIHPSRPLFEACLKMLESRSGRIPLID-------QDEETHREIVVSVLTQYRI 171

Query: 278 TSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFH--A 335
              K  + +  +    + P   + +I +  +                      ++     
Sbjct: 172 --LKFVALNCRETHFLKIPIGDLNIITQDNMKSC------------QMTTPVIDVIQMLT 217

Query: 336 EYRCR--PRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSV 393
           + R    P I   G L+ +     ++ LIK  IY +                      SV
Sbjct: 218 QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL-------------------SV 258

Query: 394 NDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM 453
            + ++  +D    V          ++   +  L  +    R   +    VV++   +VG+
Sbjct: 259 GEALMRRSDDFEGV----------YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV 308

Query: 454 ITRKDLARY 462
           +T  D+ +Y
Sbjct: 309 LTLSDILKY 317

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 29/116 (25%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
           GR+V +  +  +I L   K Y        + L   +  A                     
Sbjct: 234 GRVVDIYSKFDVINLAAEKTY--------NNLDVSVTKA--------------------- 264

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
           ++                +L  +        +  +VVV+ ++ V G+++  D+ + 
Sbjct: 265 LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA 320

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 9/55 (16%), Positives = 23/55 (41%)

Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
           +L +    +   V+ +T +     +F    +  + VV+    VV + ++ D+   
Sbjct: 194 ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINL 248

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVW 465
              + ++M      V+ STS+    +L     +  +VV+N++ +VVG  T+ D+ R RV 
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR-RVI 64

Query: 466 RHG 468
             G
Sbjct: 65  VPG 67

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 395 DLV--VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG 452
           D++  V      + + +   M  +  +   +T L  V +      ++H+++      +VG
Sbjct: 58  DIIRRVIVPGLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVG 116

Query: 453 MITRKDLARY 462
           + T  DL   
Sbjct: 117 IFTLSDLLEA 126

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 392 SVNDLV-VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV 450
            ++ L+   +   +   KL   +  +  S +    L        A     V + + +   
Sbjct: 52  HLSRLLEGRKGWPTVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRY 111

Query: 451 VGMITRKDLARY 462
            G+++RK +  +
Sbjct: 112 EGVVSRKRILGF 123

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 1/70 (1%)

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
           V  +    T         S     +   A G     V++     +GM+    L   R   
Sbjct: 5   VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGER-YLGMVHLSRLLEGRKGW 63

Query: 467 HGGRMGLEEL 476
              +  L E 
Sbjct: 64  PTVKEKLGEE 73

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 8/50 (16%), Positives = 22/50 (44%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
            M  +  + +    +   F+      +  + V+++ N V+G++T  D+  
Sbjct: 13  VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGY 62

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 395 DLV--VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGL-----RHVVVVNNN 447
           D+   +  +  +    +   M     ++ +  S+    K     G        + VV+ N
Sbjct: 59  DIGYNLIRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKN 118

Query: 448 NHVVGMITRKDLARY 462
           N +VG+I+  D+ R 
Sbjct: 119 NKLVGIISDGDIIRT 133

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
           V  +   S    +++ M  +    Q +++  ++ ++      RHV V  N   + G+I+ 
Sbjct: 83  VAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISI 141

Query: 457 KDLARYRV 464
            D+ + R+
Sbjct: 142 GDVVKARI 149

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGR 470
                 +V    S+        A  +  VVV + +  V+G+ T +DL +  V   G  
Sbjct: 33  KGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK-AVAGQGAA 89

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
           VV +   S   ++   M      V+ S S      L     +RH+ V+ +   ++G+I+ 
Sbjct: 68  VVLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVL-DGGKLIGLISI 126

Query: 457 KDLARYRV 464
            DL +  +
Sbjct: 127 GDLVKSVI 134

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGG 469
              + ++V  +  +    KL    G+  ++VV+ +  + G++T +D AR +V     
Sbjct: 19  SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVTERDYAR-KVVLQER 73

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 47.1 bits (113), Expect = 8e-07
 Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
            ++E D    VK+   M     ++    ++    +      +  ++V  ++  ++G+I+ 
Sbjct: 55  AIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISA 113

Query: 457 KDLARYRV 464
            D+ R ++
Sbjct: 114 TDILRAKM 121

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
           M T   ++  + SL  V + +        VVV      VG++T  D+  
Sbjct: 7   MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVLE 54

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 412 FMNTSP--FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGG 469
            M +S     VQ    L     +    G   + V++    + G+I+   +    +     
Sbjct: 20  LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERI 79

Query: 470 RM-GLEELKIS 479
               LEE+K+ 
Sbjct: 80  EFERLEEMKVE 90

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
            M      ++   S  +  ++        +  VN + +  G++TR+ + + 
Sbjct: 92  VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKL 140

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 415 TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
           + P  + ++ S+           +  + VV+ +  +VG+++RKDL R
Sbjct: 24  SIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLR 70

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 395 DLV--VSENDRSFTVKLNLFMNTSP--FSVQDSTSLPRVFKLFRALGLRHVVVVNNNN-- 448
           DL+          +V +++ M   P     +    +  + K      +  + V+ + +  
Sbjct: 67  DLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKG 126

Query: 449 -HVVGMITRKDLARYRV 464
             V+G +T+ ++ +  V
Sbjct: 127 FEVIGRVTKTNMTKILV 143

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
            ++  P +   + S+    K+     + H+ +V+ +  +VG+IT  D+A+ 
Sbjct: 6   ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKA 56

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 395 DLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMI 454
           D+  +      T++    M  +  +  +   +  V        +  V VV++   VVG++
Sbjct: 52  DIAKALAQNKKTIEE--IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIV 109

Query: 455 TRKDLARY 462
           T +D++R 
Sbjct: 110 TSEDISRL 117

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 397 VVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR 456
               +      ++   M      V  + +      L   + +RH+ V+++   V+G+++ 
Sbjct: 64  SYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSI 122

Query: 457 KDLARYRVWRH 467
            DL +  + +H
Sbjct: 123 GDLVKDAISQH 133

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGG 469
              +  ++    S+    +   A  +  ++V+ +   +VG++T +D +R + +    
Sbjct: 15  KGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFSR-KSYLLDK 69

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
           M  +P ++    +     +LF+   +R   VVN    +VG+I+ K +  
Sbjct: 7   MTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILV 55

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR 466
           +L + +      V+++ +L +  KL      R VVVV++    VG++T  D+ R    +
Sbjct: 61  QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK 119

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 400 ENDRSFTVKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRK 457
           E++    + +  F+  +     VQ    L     +    G   + V++ +  + G+I+  
Sbjct: 4   EHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMT 63

Query: 458 DLARYRVWRHGGRM-GLEELKIS 479
            +    +         LE +K+ 
Sbjct: 64  MMMDAILGLERIEFERLETMKVE 86

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 33/116 (28%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
            +L GLI  + ++                      I   E   +  +  + V E      
Sbjct: 54  YKLHGLISMTMMM--------------------DAILGLERIEFERLETMKVEE------ 87

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
                 MN +   ++   SL +   L   +    V V N++ +  G+ TR+++ + 
Sbjct: 88  -----VMNRNIPRLRLDDSLMKAVGLI--VNHPFVCVENDDGYFAGIFTRREVLKQ 136

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
            M T    +  +  + + F +   +    V V N+     G+ TR+ + + 
Sbjct: 91  VMLTDIPRLHINDPIMKGFGMV--INNGFVCVENDEQVFEGIFTRRVVLKE 139

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRM-GLEELK 477
            VQ   +L     +    G   + V++ +  + G+I    +              L+++ 
Sbjct: 28  HVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQIT 87

Query: 478 IS 479
           + 
Sbjct: 88  VE 89

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 43.4 bits (101), Expect = 8e-05
 Identities = 31/261 (11%), Positives = 76/261 (29%), Gaps = 27/261 (10%)

Query: 210 SSNITARI--VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSS 267
           S  +  ++  ++   +  L P  ++    ++++  +    P+ D                
Sbjct: 2   SHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVAD-----------GNNHL 50

Query: 268 AGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQ 327
            G   +     ++         A    S   ++  +      I  + K++         Q
Sbjct: 51  LGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQ 110

Query: 328 LSSEIFHAEYRCRPRIWSPGRLVGLILRSQLII-LIKHK---IYKENQNWPDDQLSSEIF 383
             S                G +     R+++   LI+ K   +     + P  ++     
Sbjct: 111 AESLKEFIS---------EGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK 161

Query: 384 HAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT-SPFSVQDSTSLPRVFKLFRALGLRHVV 442
                   + +D   +      ++ ++  M   +  +V     +  V          +  
Sbjct: 162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYP 221

Query: 443 VVNNNNHVVGMITRKDLARYR 463
           V++ NN VVG I R  L    
Sbjct: 222 VIDENNKVVGSIARFHLISTH 242

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 29/116 (25%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
           G L+ +     ++ LI+   Y          L   +  A   R  + + +         T
Sbjct: 226 GTLLNVYESVDVMHLIQDGDY--------SNLDLSVGEALLKRPANFDGVH--------T 269

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
            +                 L  +F   +   +  + VV+ N  + G+++  D+  Y
Sbjct: 270 CRAT-------------DRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNY 312

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 7/52 (13%), Positives = 22/52 (42%)

Query: 408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL 459
           ++ +   ++  +    T +  V K+     +  V +VN+   ++ +    D+
Sbjct: 186 QMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 69/573 (12%), Positives = 145/573 (25%), Gaps = 172/573 (30%)

Query: 2   KHAVQMYCGDG---EYNTLAALWLQVPEKSVRTMLHDPKGAFGVF---------SLSVFV 49
           +  VQ +  +     Y      +L      ++T    P     ++            VF 
Sbjct: 76  EEMVQKFVEEVLRINYK-----FLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 50  ---VT----YFLLSVWTYGVSVSGG----GMP------------EKYDFLSK--DNV-WK 83
              V+    Y  L      +  +      G+               Y    K    + W 
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 84  SNGK---PRSLSEQLSD-------------SGGVFIPCLLTGAAWGRLFSLFLQSIFPEA 127
           +      P ++ E L                    I  L   +    L  L     +   
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENC 246

Query: 128 ---------TWI----DPGKYALI-----GAAAQLGGVVRMTISLTIILIEATGNISFGL 169
                           +     L+          L       ISL         +++   
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH------SMTLTP 300

Query: 170 PLMLTLITAKWIGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHP------- 222
             + +L+  K++             +   +P       P   +I A  ++          
Sbjct: 301 DEVKSLL-LKYLD-----------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 223 -VICLRPLETVGNIIDVLKATSHNG-------FPI-VDVEPMT------KHSSDGAEQSS 267
            V C +    + + ++VL+   +         FP    +  +                  
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 268 AGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIK---HKI----YKEN 320
                    +  HK  S  +     KES   +  + L  ++ +  +   H+     Y   
Sbjct: 409 ---------NKLHKY-SLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 321 QNWPDDQLSSE-----IF-----HAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN 370
           + +  D L         +     H +    P   +  R+V L  R      ++ KI  ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDS 511

Query: 371 QNWPDDQLSSEIFH--AEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPR 428
             W               Y  Y       + +ND  +   +N  ++   F  +   +L  
Sbjct: 512 TAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAILD---FLPKIEENLIC 561

Query: 429 VFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
                +   L  + ++  +  +      K + R
Sbjct: 562 ----SKYTDLLRIALMAEDEAIFEE-AHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 39/291 (13%), Positives = 84/291 (28%), Gaps = 110/291 (37%)

Query: 211 SNITARIVKSHPVICLRPLE----TVGN------IIDVLKATSHNGFPIVDVEPMTKHSS 260
           + +   +  S+ V C    +     + N      ++++L+   +          +  + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---------IDPNWT 214

Query: 261 DGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKEN 320
             ++ SS      H      +R    K     +              L++L         
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK---PYENC------------LLVL--------- 250

Query: 321 QNWPDDQLSSEIFHA-EYRCRPRIWSPGRLVGLIL---RSQLIILIKHKIYKENQNWPDD 376
                +  +++ ++A    C+            IL   R + +                D
Sbjct: 251 ----LNVQNAKAWNAFNLSCK------------ILLTTRFKQVT---------------D 279

Query: 377 QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVK--LNLFMNTSPFSVQDSTSLPRVFKLFR 434
            LS+           +   + +  +  + T     +L +       QD   LPR      
Sbjct: 280 FLSAA----------TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPRE----- 321

Query: 435 ALGLRHVVVVNNNNHVVGMI---TRKDLARYRVWRHGGRMGLEELKISSTL 482
                   V+  N   + +I    R  LA +  W+H     L  + I S+L
Sbjct: 322 --------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSL 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	482
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	100.0
4ene_A	446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	99.88
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	99.87
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	99.87
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.84
4esy_A	170	CBS domain containing membrane protein; structural	99.79
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.77
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.76
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.76
3ddj_A	296	CBS domain-containing protein; structural genomics	99.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.76
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.75
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.75
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.75
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.74
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.74
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.74
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.73
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.73
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.73
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.73
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.73
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.73
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.72
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.72
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.72
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.71
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.71
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.71
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.71
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.7
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.7
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.7
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.69
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.69
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.69
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.68
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.68
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.68
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.68
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.68
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.67
3ddj_A	296	CBS domain-containing protein; structural genomics	99.67
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.67
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.66
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.66
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.66
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.65
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.65
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.65
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.65
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.64
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.63
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.63
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.62
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.62
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.61
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.61
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.54
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.46
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.41
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.4
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.37
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.35
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.33
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.31
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.26
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.15
4esy_A	170	CBS domain containing membrane protein; structural	98.8
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.62
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.61
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.61
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.6
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.56
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.56
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.55
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.55
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.54
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.54
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.53
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.51
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.51
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.51
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.5
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.5
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.5
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.5
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.49
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.45
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.44
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.41
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.41
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.41
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.4
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.4
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.39
1ots_A	465	Voltage-gated CLC-type chloride channel ERIC; CLC	98.39
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.39
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.38
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.38
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.37
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.36
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.36
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.36
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.36
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.35
3nd0_A	466	SLL0855 protein; CLC family CL-/H+ antiporter, CLC	98.32
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.29
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.28
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.28
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.27
4ene_A	446	CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem	98.27
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.26
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.25
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.19
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.19
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.15
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.06
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.99
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.88
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.74
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.41
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.37
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.34
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.22
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.22
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.9
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.82
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.35
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.3

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=100.00  E-value=2e-43  Score=386.89  Aligned_cols=320  Identities=26%  Similarity=0.418  Sum_probs=237.5

Q ss_pred             chHHHHHHhcCCC----CchhHHHHHHHHHHHHHHHHHhccccccCCCchhhhhhhccccccccCCCcccccccCCCCcc
Q psy15912         25 PEKSVRTMLHDPK----GAFGVFSLSVFVVTYFLLSVWTYGVSVSGGGMPEKYDFLSKDNVWKSNGKPRSLSEQLSDSGG  100 (482)
Q Consensus        25 ~~~~i~~l~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~gG  100 (482)
                      +++.++.+|++..    +.+.+..+++++++|++++++++|.++|                                 ||
T Consensus       297 ~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~p---------------------------------GG  343 (632)
T 3org_A          297 PRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLP---------------------------------AG  343 (632)
T ss_dssp             CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSB---------------------------------CB
T ss_pred             HHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCc---------------------------------ch
Confidence            5778888887532    2333446788899999999999999999                                 99


Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHH
Q psy15912        101 VFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKW  180 (482)
Q Consensus       101 ~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~  180 (482)
                      +|+|+|++||++|+++|.+++.++|..  ++|+.||++||||+++|++|+|++++ +++||||++++++|+|+++++||+
T Consensus       344 if~P~l~iGA~~G~~~g~~~~~~~p~~--~~p~~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~  420 (632)
T 3org_A          344 VFVPSFLIGAGFGRLYGELMRVVFGNA--IVPGSYAVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVLISVLLAVI  420 (632)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCcc--cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHHH
Confidence            999999999999999999999888864  68999999999999999999999875 899999999999999999999999


Q ss_pred             HhhhcCCChhHHHHHHcCCCCCCCCCCCCccccchhhccc--CCeeEecCCCCHHHHHHHHH-hCCCCeeeEecCCCCCC
Q psy15912        181 IGDFFTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKS--HPVICLRPLETVGNIIDVLK-ATSHNGFPIVDVEPMTK  257 (482)
Q Consensus       181 v~~~~~~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~-~~~~~~fPVVd~~~~~~  257 (482)
                      +++.+++++|+.+++.+++|+++....+..+.++|+|+|+  +++.+++++++++++.+.|+ +++++.+||||++    
T Consensus       421 v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~----  496 (632)
T 3org_A          421 VGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN----  496 (632)
T ss_dssp             HHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT----
T ss_pred             HHHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC----
Confidence            9999999999999999999987654445568899999999  89999999999999999999 8999999999975    


Q ss_pred             CCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhcc
Q psy15912        258 HSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEY  337 (482)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~  337 (482)
                                                             ++++|+|+++|+.+.+.+......  .+   ....      
T Consensus       497 ---------------------------------------~~lvGiVt~~DL~~~l~~~~~~~~--~~---~~~~------  526 (632)
T 3org_A          497 ---------------------------------------GYLLGAISRKEIVDRLQHVLEDVP--EP---IAGH------  526 (632)
T ss_dssp             ---------------------------------------CBBCCEESHHHHTTTTTTC----------------------
T ss_pred             ---------------------------------------CeEEEEEEHHHHHHHHHHHhhhcc--cc---cccc------
Confidence                                                   689999999999876543210000  00   0000      


Q ss_pred             ccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCc
Q psy15912        338 RCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSP  417 (482)
Q Consensus       338 ~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p  417 (482)
                                ...-....+++.+..+.. .....   .....  ...+   +    +....     ...-+++++|+++|
T Consensus       527 ----------~~~~~~~~~~l~~~~~~~-~~~~~---~~~~~--~~~e---~----~~~~~-----~~~~~v~~iMt~~p  578 (632)
T 3org_A          527 ----------RTLVLLDAADLSENIEGL-VDETP---SGEHS--SKGK---R----TATVL-----EPTSSLVVPCDVSP  578 (632)
T ss_dssp             ------------------------------------------------------------------------CCSCCCCC
T ss_pred             ----------cceeccCHHHHHhhcccC-CCCCc---ccchh--hhcc---c----ceEee-----ccccccchhhcCCC
Confidence                      000000000000000000 00000   00000  0000   0    00000     01114899999999


Q ss_pred             eeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       418 ~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ++|++++++.++.++|++++.+++||+ ++|+++||||++|+++..
T Consensus       579 itV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~  623 (632)
T 3org_A          579 IVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGY  623 (632)
T ss_dssp             CEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECC
T ss_pred             ceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHH
Confidence            999999999999999999999999999 789999999999999764

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...

Probab=99.88  E-value=3.9e-22  Score=209.45  Aligned_cols=133  Identities=24%  Similarity=0.406  Sum_probs=122.9

Q ss_pred             cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912         63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  135 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~  135 (482)
                      .+.|+||+.++.+++|+..|..     +.|+  |++|+|+|.+||+|+|+|++||++|+++|.+++.++|... .+|+.|
T Consensus       296 ~~~G~G~~~i~~~~~~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~-~~~~~~  374 (446)
T 4ene_A          296 ATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAGTF  374 (446)
T ss_dssp             GGSSCCSTHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGT-CCHHHH
T ss_pred             hhcCCcHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhCCccc-cCHHHH
Confidence            5689999999999999977643     3565  9999999999999999999999999999999999988753 789999


Q ss_pred             HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHH
Q psy15912        136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQL  196 (482)
Q Consensus       136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~  196 (482)
                      +++||+|++++++|+|++++++++||||++++++|+|+++++|+++++.++ +++|+.++++
T Consensus       375 a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~~~~iY~~~l~r  436 (446)
T 4ene_A          375 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILAR  436 (446)
T ss_dssp             HHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            999999999999999999999999999999999999999999999999986 8999998765

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A

Probab=99.87  E-value=4.3e-22  Score=209.84  Aligned_cols=135  Identities=19%  Similarity=0.339  Sum_probs=124.0

Q ss_pred             ccccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912         62 VSVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  134 (482)
Q Consensus        62 ~~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  134 (482)
                      -.+.|+||+.++.+++|+..+..     +.|+  |++|+|+|.+||+|+|+|++||++|+++|.+++.++|... .+|+.
T Consensus       302 p~~~G~G~~~i~~~~~~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~-~~~~~  380 (466)
T 3nd0_A          302 LPLTDGGDNAVLWAFNSQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQI-PEPAV  380 (466)
T ss_dssp             SSCSSSSHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTC-SSTHH
T ss_pred             HHHcCCcHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccc-cCHHH
Confidence            46789999999999999977643     3565  9999999999999999999999999999999999998653 78999


Q ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHc
Q psy15912        135 YALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS  197 (482)
Q Consensus       135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~  197 (482)
                      |+++||+|++++++|+|++++++++||||++++++|+|+++++|+++++.++ +++|+.++++.
T Consensus       381 ~a~vGmaa~~a~v~~aPlt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r~  444 (466)
T 3nd0_A          381 MAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLERT  444 (466)
T ss_dssp             HHHHTTSHHHHHHHSCHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999985 89999988764

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...

Probab=99.87  E-value=5e-22  Score=209.72  Aligned_cols=134  Identities=24%  Similarity=0.405  Sum_probs=123.1

Q ss_pred             cccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHH
Q psy15912         63 SVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKY  135 (482)
Q Consensus        63 ~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~~  135 (482)
                      .+.|+||+.++.+++++..+..     +.|+  |++|+|+|.+||+|+|+|++||++|+++|.+++.++|.. ..+|+.|
T Consensus       311 ~~lG~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~-~~~~~~~  389 (465)
T 1ots_A          311 ATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY-HLEAGTF  389 (465)
T ss_dssp             GGSSCSTTHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGG-TCCHHHH
T ss_pred             hhcCChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHCCcc-cccHHHH
Confidence            6789999999999999865543     3565  999999999999999999999999999999999988875 3789999


Q ss_pred             HHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHc
Q psy15912        136 ALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS  197 (482)
Q Consensus       136 a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~  197 (482)
                      +++||+|++++++|+|++++++++||||++++++|+|+++++|+++++.++ +++|+.+++++
T Consensus       390 alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~~~~~iY~~~l~~~  452 (465)
T 1ots_A          390 AIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART  452 (465)
T ss_dssp             HHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999986 89999998765

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.84  E-value=1.6e-20  Score=182.59  Aligned_cols=213  Identities=18%  Similarity=0.212  Sum_probs=118.2

Q ss_pred             CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      ....++|+|+|+++++++.+++++.++.++|.++++++|||||+++                                  
T Consensus         9 ~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~----------------------------------   54 (250)
T 2d4z_A            9 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD----------------------------------   54 (250)
T ss_dssp             CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT----------------------------------
T ss_pred             ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCC----------------------------------
Confidence            5678999999999999999999999999999999999999999752                                  


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCC-CCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhh--
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQN-WPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHK--  365 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~--  365 (482)
                             +++++|+|+++||++++.......... .....+... ........+...............+-....+..  
T Consensus        55 -------~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (250)
T 2d4z_A           55 -------TNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEE-GRNGETGASFTGEAESSFAYIDQEDAEGQQREGLE  126 (250)
T ss_dssp             -------TCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC------------------------------------
T ss_pred             -------CCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccc-ccccccccccccCCcceeeeccccccccccccCcc
Confidence                   268999999999998876543111110 000000000 000000000000000000000000000000000  


Q ss_pred             hhccCCCCCCCCC-----ChhhhhhhCC-------CCCCCCccccCcc--------cccccccccc-ccccCceeeeCCC
Q psy15912        366 IYKENQNWPDDQL-----SSEIFHAEYP-------RYPSVNDLVVSEN--------DRSFTVKLNL-FMNTSPFSVQDST  424 (482)
Q Consensus       366 ~~~~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~--------~~~~~i~v~~-im~~~p~~V~~~~  424 (482)
                      ........+....     .-..+...+.       .++...++.++.+        .....+++++ +|+++|++|.+++
T Consensus       127 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~t  206 (250)
T 2d4z_A          127 AVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGT  206 (250)
T ss_dssp             ----------------------------------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTC
T ss_pred             ccCCcccCCccccccccccccccccccccccccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCC
Confidence            0000000000000     0000000000       0111222222221        1445667775 7999999999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        425 SLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       425 ~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +|.+|+.+|+++|++|+||++ +|+++|||||+||+++..
T Consensus       207 sL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          207 SLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             BHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            999999999999999999996 799999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.79  E-value=2.2e-19  Score=163.66  Aligned_cols=147  Identities=20%  Similarity=0.324  Sum_probs=111.0

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      +..++|+|+|+++++++.+++++.++++.|.+++++++||+|++                                    
T Consensus        15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~------------------------------------   58 (170)
T 4esy_A           15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN------------------------------------   58 (170)
T ss_dssp             HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT------------------------------------
T ss_pred             HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC------------------------------------
Confidence            45789999999999999999999999999999999999999976                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                             |+++|+||.+|+++.........         ....                             ....    
T Consensus        59 -------g~lvGiit~~Dll~~~~~~~~~~---------~~~~-----------------------------~~~~----   89 (170)
T 4esy_A           59 -------GHLVGIITESDFLRGSIPFWIYE---------ASEI-----------------------------LSRA----   89 (170)
T ss_dssp             -------SCEEEEEEGGGGGGGTCCTTHHH---------HHHH-----------------------------HTTT----
T ss_pred             -------ccEEEEEEHHHHHHHHhhccccc---------hhhh-----------------------------hhhc----
Confidence                   79999999999875433211000         0000                             0000    


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                              .....+....              ......+++++|+++++++++++++.+|.++|.+.+++++||+| +|+
T Consensus        90 --------~~~~~~~~~~--------------~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~  146 (170)
T 4esy_A           90 --------IPAPEVEHLF--------------ETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGV  146 (170)
T ss_dssp             --------SCHHHHHHHH--------------HHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTE
T ss_pred             --------cchhhHHhhh--------------ccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCE
Confidence                    0000000000              00123479999999999999999999999999999999999997 699


Q ss_pred             EEEEEeHHHhHHHHH
Q psy15912        450 VVGMITRKDLARYRV  464 (482)
Q Consensus       450 lvGIITr~DLl~~~~  464 (482)
                      ++||||++|++++..
T Consensus       147 lvGivt~~Dil~~l~  161 (170)
T 4esy_A          147 PVGIVTRRDLLKLLL  161 (170)
T ss_dssp             EEEEEEHHHHTTTSC
T ss_pred             EEEEEEHHHHHHHHH
Confidence            999999999998753

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.77  E-value=6.2e-18  Score=150.14  Aligned_cols=124  Identities=14%  Similarity=0.266  Sum_probs=110.8

Q ss_pred             CccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        209 LSSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       209 ~l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      .+..++|+|+|++  +++++++++++.++++.|.+++++.+||+|++                                 
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~---------------------------------   65 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN---------------------------------   65 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS---------------------------------
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC---------------------------------
Confidence            4668899999998  99999999999999999999999999999874                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                               .++++|+|+.+|+...+....                                                  
T Consensus        66 ---------~~~lvGivt~~dl~~~~~~~~--------------------------------------------------   86 (148)
T 3lv9_A           66 ---------KDDILGFVHIRDLYNQKINEN--------------------------------------------------   86 (148)
T ss_dssp             ---------TTSEEEEEEHHHHHHHHHHHS--------------------------------------------------
T ss_pred             ---------CCcEEEEEEHHHHHHHHhcCC--------------------------------------------------
Confidence                     158999999999987664320                                                  


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                                             ..+++++| ++++++++++++.+++++|.+.+.+++||+|+
T Consensus        87 ---------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  126 (148)
T 3lv9_A           87 ---------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE  126 (148)
T ss_dssp             ---------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ---------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence                                                   12688999 88999999999999999999999999999998


Q ss_pred             CCeEEEEEeHHHhHHHHH
Q psy15912        447 NNHVVGMITRKDLARYRV  464 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~  464 (482)
                      +|+++|+||++|++++..
T Consensus       127 ~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A          127 YGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             TSSEEEEEEHHHHHHHHH
T ss_pred             CCCEEEEEEHHHHHHHHh
Confidence            899999999999998754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.76  E-value=5.6e-18  Score=165.26  Aligned_cols=182  Identities=23%  Similarity=0.390  Sum_probs=139.8

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++|+|.++++++.+++++.++++.|.+++++.+||+|++                                      
T Consensus        83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------------------------------------  124 (280)
T 3kh5_A           83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE--------------------------------------  124 (280)
T ss_dssp             TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT--------------------------------------
T ss_pred             hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC--------------------------------------
Confidence            458999999999999999999999999999999999999875                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhcc-----C------CCCCCccchh---hhhhhccccccccCCCCccccchhhHH
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKE-----N------QNWPDDQLSS---EIFHAEYRCRPRIWSPGRLVGLILRSQ  357 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~-----~------~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~G~i~~~~  357 (482)
                           ++++|+++.+|+.+.+.......     .      ...+++.+..   .+.....++.|++ ++|.++|+++.+|
T Consensus       125 -----~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~d  198 (280)
T 3kh5_A          125 -----NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTD  198 (280)
T ss_dssp             -----CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHH
T ss_pred             -----CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHH
Confidence                 69999999999998876442111     0      0122222221   2345566778888 7899999999999


Q ss_pred             HHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcC
Q psy15912        358 LIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALG  437 (482)
Q Consensus       358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~  437 (482)
                      +.+.+......+.            +..  .           ........+++++|+++++++++++++.+|.+.|.+.+
T Consensus       199 l~~~~~~~~~~~~------------~~~--~-----------~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~  253 (280)
T 3kh5_A          199 FIKLLGSDWAFNH------------MQT--G-----------NVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTND  253 (280)
T ss_dssp             HHHHHTSHHHHHH------------HHS--C-----------CTHHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHT
T ss_pred             HHHHHhhhhhhhh------------hcc--c-----------chhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCC
Confidence            9887743211100            000  0           00001224789999999999999999999999999999


Q ss_pred             CCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        438 LRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       438 lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      .+++||+|++|+++|+||++|++++
T Consensus       254 ~~~l~Vvd~~g~~~Givt~~dil~~  278 (280)
T 3kh5_A          254 IGALPVVDENLRIKGIITEKDVLKY  278 (280)
T ss_dssp             CCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred             CCEEEEECCCCeEEEEEeHHHHHHh
Confidence            9999999998999999999999975

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.76  E-value=1.2e-17  Score=145.16  Aligned_cols=126  Identities=20%  Similarity=0.337  Sum_probs=111.0

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ..++++|+|.+++.++++++++.++++.|.+++++.+||+| +                                     
T Consensus         2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------------------------------   43 (133)
T 2ef7_A            2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-------------------------------------   43 (133)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-------------------------------------
T ss_pred             CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-------------------------------------
Confidence            46799999999999999999999999999999999999999 5                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                            ++++|+|+.+|+...+....                                                      
T Consensus        44 ------~~~~Givt~~dl~~~~~~~~------------------------------------------------------   63 (133)
T 2ef7_A           44 ------NKPVGIITERDIVKAIGKGK------------------------------------------------------   63 (133)
T ss_dssp             ------TEEEEEEEHHHHHHHHHTTC------------------------------------------------------
T ss_pred             ------CEEEEEEcHHHHHHHHhcCC------------------------------------------------------
Confidence                  59999999999977654320                                                      


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                       ....+++++|++++.++++++++.++.+.|.+.+.+++||+|++|++
T Consensus        64 ---------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~  110 (133)
T 2ef7_A           64 ---------------------------------SLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNL  110 (133)
T ss_dssp             ---------------------------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             ---------------------------------CcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Confidence                                             00127899999999999999999999999999999999999989999


Q ss_pred             EEEEeHHHhHHHHHhhc
Q psy15912        451 VGMITRKDLARYRVWRH  467 (482)
Q Consensus       451 vGIITr~DLl~~~~~~~  467 (482)
                      +|+||++|++++.....
T Consensus       111 ~Giit~~dll~~~~~~~  127 (133)
T 2ef7_A          111 KGIISIRDITRAIDDMF  127 (133)
T ss_dssp             EEEEEHHHHHHHHHHHC
T ss_pred             EEEEEHHHHHHHHHHHH
Confidence            99999999998865443

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.76  E-value=1.8e-18  Score=170.97  Aligned_cols=184  Identities=15%  Similarity=0.210  Sum_probs=143.6

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++|+|+++++++.+++++.++++.|.+++++.+||+|++                                      
T Consensus        92 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------------------------------------  133 (296)
T 3ddj_A           92 TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN--------------------------------------  133 (296)
T ss_dssp             TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT--------------------------------------
T ss_pred             cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            468999999999999999999999999999999999999875                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhc----c------CCCCCCccchh---hhhhhccccccccCCCCccccchhhHHH
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYK----E------NQNWPDDQLSS---EIFHAEYRCRPRIWSPGRLVGLILRSQL  358 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~----~------~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~G~i~~~~l  358 (482)
                           ++++|+++.+|+...+......    +      ....+++.+..   .+.....++.|++++++.++|+++.+|+
T Consensus       134 -----~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl  208 (296)
T 3ddj_A          134 -----DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA  208 (296)
T ss_dssp             -----SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             -----CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence                 6899999999998755432110    0      01123333322   3345566788999989999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCC
Q psy15912        359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGL  438 (482)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~l  438 (482)
                      .+.+....... .        .                     ......+++++|+++++++++++++.+|.++|.+.+.
T Consensus       209 ~~~~~~~~~~~-~--------~---------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~  258 (296)
T 3ddj_A          209 IKQLAKAVDKL-D--------P---------------------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRI  258 (296)
T ss_dssp             HHHHHHHHHHT-C--------T---------------------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhc-C--------h---------------------hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCC
Confidence            88775321110 0        0                     0012237899999999999999999999999999999


Q ss_pred             CEEEEECCCCeEEEEEeHHHhHHHHHhhcc
Q psy15912        439 RHVVVVNNNNHVVGMITRKDLARYRVWRHG  468 (482)
Q Consensus       439 r~lpVVD~~g~lvGIITr~DLl~~~~~~~~  468 (482)
                      +++||+|++|+++||||++|++++......
T Consensus       259 ~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~  288 (296)
T 3ddj_A          259 GSLLILNKDNTIRGIITERDLLIALHHILV  288 (296)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCeEEEEEcHHHHHHHHHHHhc
Confidence            999999989999999999999998765443

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=4.6e-18  Score=148.11  Aligned_cols=124  Identities=12%  Similarity=0.135  Sum_probs=106.2

Q ss_pred             ccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      .++|+|+|++  +++++++++++.++++.|++++++.+||++++                                    
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~------------------------------------   44 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS------------------------------------   44 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS------------------------------------
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC------------------------------------
Confidence            3689999974  78999999999999999999999999999764                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                            +++++|+|+.+|+.+++....                                                     
T Consensus        45 ------~~~lvGivt~~dl~~~~~~~~-----------------------------------------------------   65 (130)
T 3hf7_A           45 ------LDDAISMLRVREAYRLMTEKK-----------------------------------------------------   65 (130)
T ss_dssp             ------GGGEEEEEEHHHHHHHHTSSS-----------------------------------------------------
T ss_pred             ------CCcEEEEEEHHHHHHHHhccC-----------------------------------------------------
Confidence                  268999999999987654320                                                     


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                       .....+++++| ++|+++++++++.++.++|.+.+.+++||+|++|+
T Consensus        66 ---------------------------------~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  111 (130)
T 3hf7_A           66 ---------------------------------EFTKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGD  111 (130)
T ss_dssp             ---------------------------------CCCHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSC
T ss_pred             ---------------------------------ccchhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCC
Confidence                                             00112678889 67889999999999999999999999999999999


Q ss_pred             EEEEEeHHHhHHHHH
Q psy15912        450 VVGMITRKDLARYRV  464 (482)
Q Consensus       450 lvGIITr~DLl~~~~  464 (482)
                      ++||||++|+++...
T Consensus       112 lvGiit~~Dil~~l~  126 (130)
T 3hf7_A          112 IQGLVTVEDILEEIV  126 (130)
T ss_dssp             EEEEEEHHHHHHHHH
T ss_pred             EEEEeeHHHHHHHHh
Confidence            999999999998754

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.76  E-value=4.7e-18  Score=147.68  Aligned_cols=124  Identities=20%  Similarity=0.286  Sum_probs=104.8

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +..++|+|+|++  +++++++++++.++++.|.+++++.+||+|++                                  
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------------------------------   48 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ----------------------------------   48 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS----------------------------------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----------------------------------
Confidence            567899999994  57799999999999999999999999999874                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              .++++|+|+.+|+...+....                                                   
T Consensus        49 --------~~~~~Givt~~dl~~~~~~~~---------------------------------------------------   69 (130)
T 3i8n_A           49 --------KDNIIGFVHRLELFKMQQSGS---------------------------------------------------   69 (130)
T ss_dssp             --------TTCEEEECCHHHHHHHHHTTT---------------------------------------------------
T ss_pred             --------CCcEEEEEEHHHHHHHHhcCC---------------------------------------------------
Confidence                    268999999999987654320                                                   


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                           ...+++++|. +++++++++++.++++.|.+.+.+++||+|++
T Consensus        70 -------------------------------------~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~  111 (130)
T 3i8n_A           70 -------------------------------------GQKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEY  111 (130)
T ss_dssp             -------------------------------------TTSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTT
T ss_pred             -------------------------------------CcCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCC
Confidence                                                 0126888994 58899999999999999999999999999999


Q ss_pred             CeEEEEEeHHHhHHHHH
Q psy15912        448 NHVVGMITRKDLARYRV  464 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~  464 (482)
                      |+++|+||++|++++..
T Consensus       112 g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A          112 GTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             SCEEEEEEHHHHHHHHH
T ss_pred             CCEEEEEEHHHHHHHHc
Confidence            99999999999998753

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.75  E-value=9.1e-18  Score=143.50  Aligned_cols=119  Identities=21%  Similarity=0.315  Sum_probs=107.9

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      .+++|+|.+++.++.+++++.++++.|.+++++.+||+|++                                       
T Consensus         1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---------------------------------------   41 (122)
T 3kpb_A            1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEH---------------------------------------   41 (122)
T ss_dssp             CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT---------------------------------------
T ss_pred             CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC---------------------------------------
Confidence            37899999999999999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+|+.+|+...+....                                                        
T Consensus        42 ----~~~~G~vt~~dl~~~~~~~~--------------------------------------------------------   61 (122)
T 3kpb_A           42 ----GKLVGIITSWDIAKALAQNK--------------------------------------------------------   61 (122)
T ss_dssp             ----SBEEEEECHHHHHHHHHTTC--------------------------------------------------------
T ss_pred             ----CCEEEEEEHHHHHHHHHhcc--------------------------------------------------------
Confidence                69999999999987654320                                                        


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                        .+++++|+++++++++++++.++++.|.+.+.+++||+|++|+++|
T Consensus        62 ----------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~G  107 (122)
T 3kpb_A           62 ----------------------------------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVG  107 (122)
T ss_dssp             ----------------------------------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred             ----------------------------------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEE
Confidence                                              1688999999999999999999999999999999999998899999


Q ss_pred             EEeHHHhHHHHH
Q psy15912        453 MITRKDLARYRV  464 (482)
Q Consensus       453 IITr~DLl~~~~  464 (482)
                      +||++|++++..
T Consensus       108 ivt~~dl~~~l~  119 (122)
T 3kpb_A          108 IVTSEDISRLFG  119 (122)
T ss_dssp             EEEHHHHHHHHC
T ss_pred             EEeHHHHHHHhh
Confidence            999999998753

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.75  E-value=1.3e-17  Score=152.31  Aligned_cols=125  Identities=18%  Similarity=0.194  Sum_probs=107.6

Q ss_pred             Cccccchhhccc--CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        209 LSSNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       209 ~l~~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      .+..++|+|+|+  ++++++++++++.++++.|.+++++.+||+|++                                 
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~---------------------------------   84 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN---------------------------------   84 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS---------------------------------
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC---------------------------------
Confidence            366789999999  789999999999999999999999999999874                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                               .++++|+|+.+|+...+...                                                   
T Consensus        85 ---------~~~lvGivt~~dl~~~~~~~---------------------------------------------------  104 (172)
T 3lhh_A           85 ---------VDDMVGIISAKQLLSESIAG---------------------------------------------------  104 (172)
T ss_dssp             ---------TTSEEEEEEHHHHHHHHHTT---------------------------------------------------
T ss_pred             ---------CCeEEEEEEHHHHHHHHhhc---------------------------------------------------
Confidence                     15899999999998765432                                                   


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                                            ...+++++| ++++++++++++.+++++|.+.+.+++||+|+
T Consensus       105 --------------------------------------~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~  145 (172)
T 3lhh_A          105 --------------------------------------ERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE  145 (172)
T ss_dssp             --------------------------------------CCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred             --------------------------------------CcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence                                                  012789999 99999999999999999999999999999998


Q ss_pred             CCeEEEEEeHHHhHHHHHh
Q psy15912        447 NNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~~  465 (482)
                      +|+++||||++|++++...
T Consensus       146 ~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          146 YGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             TSCEEEEEEHHHHHHHHHT
T ss_pred             CCCEEEEeeHHHHHHHHhC
Confidence            8999999999999998653

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.75  E-value=4.3e-18  Score=152.24  Aligned_cols=124  Identities=17%  Similarity=0.247  Sum_probs=109.7

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEe-cCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIV-DVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVV-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      +..++|+|+|++  +++++++++++.++++.|.+++++.+||+ |++                                 
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~---------------------------------   63 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND---------------------------------   63 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE---------------------------------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC---------------------------------
Confidence            446799999996  89999999999999999999999999999 543                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                               +++++|+|+.+|+...+....                                                  
T Consensus        64 ---------~~~lvGivt~~dl~~~~~~~~--------------------------------------------------   84 (153)
T 3oco_A           64 ---------KDKIIGYAYNYDIVRQARIDD--------------------------------------------------   84 (153)
T ss_dssp             ---------EEEEEEEEEHHHHHHHHHHHT--------------------------------------------------
T ss_pred             ---------CCcEEEEEEHHHHHhHHhcCC--------------------------------------------------
Confidence                     269999999999987764420                                                  


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                                             ..+++++| ++++++++++++.+++++|.+.+.+++||+|+
T Consensus        85 ---------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~  124 (153)
T 3oco_A           85 ---------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE  124 (153)
T ss_dssp             ---------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT
T ss_pred             ---------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence                                                   12789999 89999999999999999999999999999998


Q ss_pred             CCeEEEEEeHHHhHHHHHh
Q psy15912        447 NNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~~  465 (482)
                      +|+++||||++|++++...
T Consensus       125 ~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A          125 YGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             TSCEEEEECHHHHHHHHHC
T ss_pred             CCCEEEEeeHHHHHHHHhc
Confidence            9999999999999998654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.74  E-value=2e-17  Score=145.48  Aligned_cols=122  Identities=18%  Similarity=0.262  Sum_probs=107.7

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      .++++|+|.+++.++++++++.++++.|.+++++.+||+|++                                      
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------------------------------------   45 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD--------------------------------------   45 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT--------------------------------------
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            478999999999999999999999999999999999999975                                      


Q ss_pred             CCCCCC--eEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        292 RKESPG--RLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       292 ~~~~~g--~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                           +  +++|+|+.+|+.+.+.+..                                                     
T Consensus        46 -----~~~~~~Givt~~dl~~~~~~~~-----------------------------------------------------   67 (141)
T 2rih_A           46 -----NPKRPVAVVSERDILRAVAQRL-----------------------------------------------------   67 (141)
T ss_dssp             -----EEEEEEEEEEHHHHHHHHHTTC-----------------------------------------------------
T ss_pred             -----CcceeEEEEEHHHHHHHHhcCC-----------------------------------------------------
Confidence                 6  8999999999987654320                                                     


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                        ....+++++|.+++++++++ ++.+++++|.+.+.+++||+|++|+
T Consensus        68 ----------------------------------~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~  112 (141)
T 2rih_A           68 ----------------------------------DLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGE  112 (141)
T ss_dssp             ----------------------------------CTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred             ----------------------------------CCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCc
Confidence                                              00127899999999999999 9999999999999999999998999


Q ss_pred             EEEEEeHHHhHHHHH
Q psy15912        450 VVGMITRKDLARYRV  464 (482)
Q Consensus       450 lvGIITr~DLl~~~~  464 (482)
                      ++|+||++|++++..
T Consensus       113 ~~Giit~~dll~~~~  127 (141)
T 2rih_A          113 LVGVLSIRDLCFERA  127 (141)
T ss_dssp             EEEEEEHHHHHSCHH
T ss_pred             EEEEEEHHHHHHHHH
Confidence            999999999987643

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.74  E-value=4.2e-18  Score=149.40  Aligned_cols=123  Identities=18%  Similarity=0.322  Sum_probs=105.2

Q ss_pred             ccchhhccc--CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      .++|+|+|+  +++.++.++.++.++++.|.+++++.+||+|++                                    
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~------------------------------------   45 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES------------------------------------   45 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------------------------------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------------------------------
Confidence            478999999  678999999999999999999999999999874                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                            .++++|+|+.+|+.+.+....                                                     
T Consensus        46 ------~~~~vGivt~~dl~~~~~~~~-----------------------------------------------------   66 (136)
T 3lfr_A           46 ------HDDVLGVLLAKDLLPLILKAD-----------------------------------------------------   66 (136)
T ss_dssp             ------TTCEEEEEEGGGGGGGGGSSS-----------------------------------------------------
T ss_pred             ------CCcEEEEEEHHHHHHHHHhcc-----------------------------------------------------
Confidence                  258999999999865432110                                                     


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                        ....+++++|++ ++++++++++.+++++|.+.+.+++||+|++|+
T Consensus        67 ----------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~  111 (136)
T 3lfr_A           67 ----------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGG  111 (136)
T ss_dssp             ----------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred             ----------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence                                              012378899976 899999999999999999999999999999999


Q ss_pred             EEEEEeHHHhHHHHH
Q psy15912        450 VVGMITRKDLARYRV  464 (482)
Q Consensus       450 lvGIITr~DLl~~~~  464 (482)
                      ++||||++|+++...
T Consensus       112 lvGiit~~Dil~~l~  126 (136)
T 3lfr_A          112 VAGLVTIEDVLEQIV  126 (136)
T ss_dssp             EEEEEEHHHHHTTC-
T ss_pred             EEEEEEHHHHHHHHh
Confidence            999999999998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.74  E-value=4.2e-18  Score=147.38  Aligned_cols=121  Identities=19%  Similarity=0.402  Sum_probs=103.6

Q ss_pred             ccchhhcccCC--eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~~~--~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      .++|+|+|+++  +.++++++++.++++.|.+++++.+||+|++                                    
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------------------------------   45 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------------------------------   45 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------------------------------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------------------------------
Confidence            47899999954  9999999999999999999999999999874                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                            .++++|+|+.+|+.+.+...                                                      
T Consensus        46 ------~~~~vGivt~~dl~~~~~~~------------------------------------------------------   65 (127)
T 3nqr_A           46 ------KDHIEGILMAKDLLPFMRSD------------------------------------------------------   65 (127)
T ss_dssp             ------TTCEEEEEEGGGGGGGGSTT------------------------------------------------------
T ss_pred             ------CCcEEEEEEHHHHHHHHhcc------------------------------------------------------
Confidence                  25899999999986543211                                                      


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                        ....+++++|.+ ++++++++++.++++.|.+.+.+++||+|++|+
T Consensus        66 ----------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  110 (127)
T 3nqr_A           66 ----------------------------------AEAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG  110 (127)
T ss_dssp             ----------------------------------CCCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             ----------------------------------CCCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCC
Confidence                                              011268889965 789999999999999999999999999999999


Q ss_pred             EEEEEeHHHhHHHH
Q psy15912        450 VVGMITRKDLARYR  463 (482)
Q Consensus       450 lvGIITr~DLl~~~  463 (482)
                      ++||||++|++++.
T Consensus       111 ~~Giit~~dll~~l  124 (127)
T 3nqr_A          111 VSGLVTIEDILELI  124 (127)
T ss_dssp             EEEEEEHHHHHHHC
T ss_pred             EEEEEEHHHHHHHH
Confidence            99999999999864

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.73  E-value=1e-17  Score=145.40  Aligned_cols=121  Identities=15%  Similarity=0.303  Sum_probs=103.7

Q ss_pred             cccchhhccc--CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        211 SNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       211 ~~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      ..++|+|+|+  ++++++++++++.++++.|.+++++.+||+|++                                   
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----------------------------------   47 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD-----------------------------------   47 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS-----------------------------------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------------------------------
Confidence            3678999999  688999999999999999999999999999874                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                             .++++|+|+.+|+.+.+..                                                      
T Consensus        48 -------~~~~~Givt~~dl~~~~~~------------------------------------------------------   66 (129)
T 3jtf_A           48 -------RDNIIGILLAKDLLRYMLE------------------------------------------------------   66 (129)
T ss_dssp             -------TTCEEEEEEGGGGGGGGTC------------------------------------------------------
T ss_pred             -------CCcEEEEEEHHHHHhHhcc------------------------------------------------------
Confidence                   2589999999997543211                                                      


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                                          ...+++++|.+ ++++++++++.+++++|.+.+.+++||+|++|
T Consensus        67 ------------------------------------~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g  109 (129)
T 3jtf_A           67 ------------------------------------PALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHG  109 (129)
T ss_dssp             ------------------------------------TTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-C
T ss_pred             ------------------------------------CCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC
Confidence                                                01267888865 88999999999999999999999999999889


Q ss_pred             eEEEEEeHHHhHHHHH
Q psy15912        449 HVVGMITRKDLARYRV  464 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~  464 (482)
                      +++|+||++|++++..
T Consensus       110 ~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A          110 GISGLVTMEDVLEQIV  125 (129)
T ss_dssp             CEEEEEEHHHHHHHHH
T ss_pred             CEEEEEEHHHHHHHHh
Confidence            9999999999998754

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.73  E-value=2.9e-17  Score=143.59  Aligned_cols=127  Identities=14%  Similarity=0.309  Sum_probs=109.4

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      +..++++|+|.+++.++++++++.++++.|.+++++.+||+|++                                    
T Consensus         4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~------------------------------------   47 (138)
T 2yzi_A            4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD------------------------------------   47 (138)
T ss_dssp             CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT------------------------------------
T ss_pred             hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence            56789999999999999999999999999999999999999965                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                             ++++|+|+.+|+.+.+....                                                     
T Consensus        48 -------~~~~Givt~~dl~~~~~~~~-----------------------------------------------------   67 (138)
T 2yzi_A           48 -------GNVVGFFTKSDIIRRVIVPG-----------------------------------------------------   67 (138)
T ss_dssp             -------SCEEEEEEHHHHHHHTTTTC-----------------------------------------------------
T ss_pred             -------CcEEEEEeHHHHHHHHHhcC-----------------------------------------------------
Confidence                   68999999999863321110                                                     


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                       .....+++++|+++++++++++++.++.++|.+.+.+++ |+|++|+
T Consensus        68 ---------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~  113 (138)
T 2yzi_A           68 ---------------------------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGK  113 (138)
T ss_dssp             ---------------------------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTE
T ss_pred             ---------------------------------CcccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCC
Confidence                                             001127899999999999999999999999999999999 9998999


Q ss_pred             EEEEEeHHHhHHHHHhh
Q psy15912        450 VVGMITRKDLARYRVWR  466 (482)
Q Consensus       450 lvGIITr~DLl~~~~~~  466 (482)
                      ++|+||++|++++....
T Consensus       114 ~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A          114 IVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             EEEEEEHHHHHHHHHCC
T ss_pred             EEEEEEHHHHHHHHHHH
Confidence            99999999999886543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.73  E-value=1.2e-17  Score=144.62  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=107.9

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ..++++|+|.+++.++.+++++.++++.|++++++.+||+|+                                      
T Consensus         3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--------------------------------------   44 (128)
T 3gby_A            3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG--------------------------------------   44 (128)
T ss_dssp             TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--------------------------------------
T ss_pred             cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--------------------------------------
Confidence            368999999999999999999999999999999999999986                                      


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                            ++++|+|+.+|+.+.+....                                                      
T Consensus        45 ------~~~~Givt~~dl~~~~~~~~------------------------------------------------------   64 (128)
T 3gby_A           45 ------ERYLGMVHLSRLLEGRKGWP------------------------------------------------------   64 (128)
T ss_dssp             ------TEEEEEEEHHHHHTTCSSSC------------------------------------------------------
T ss_pred             ------CEEEEEEEHHHHHHHHhhCC------------------------------------------------------
Confidence                  38999999999864322110                                                      


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                       ....+++++|++++.++++++++.++++.|.+.+.+++||+|++|++
T Consensus        65 ---------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~  111 (128)
T 3gby_A           65 ---------------------------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRY  111 (128)
T ss_dssp             ---------------------------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBE
T ss_pred             ---------------------------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCE
Confidence                                             01126899999999999999999999999999999999999999999


Q ss_pred             EEEEeHHHhHHHHH
Q psy15912        451 VGMITRKDLARYRV  464 (482)
Q Consensus       451 vGIITr~DLl~~~~  464 (482)
                      +|+||++|++++..
T Consensus       112 ~Giit~~dll~~l~  125 (128)
T 3gby_A          112 EGVVSRKRILGFLA  125 (128)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999998754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.73  E-value=2.2e-17  Score=144.16  Aligned_cols=126  Identities=21%  Similarity=0.383  Sum_probs=108.9

Q ss_pred             CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      .+..++++|+|.+++.++.+++++.++++.|.+++++.+||+|++                                   
T Consensus         4 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------------------------------   48 (138)
T 2p9m_A            4 TLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-----------------------------------   48 (138)
T ss_dssp             -CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-----------------------------------
T ss_pred             ccccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-----------------------------------
Confidence            456789999999999999999999999999999999999999875                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHH-HHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        289 DASRKESPGRLVGLILRSQL-IILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL-~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              ++++|+++.+|+ ...+....                                                   
T Consensus        49 --------~~~~Givt~~dl~~~~~~~~~---------------------------------------------------   69 (138)
T 2p9m_A           49 --------NKVIGIVTTTDIGYNLIRDKY---------------------------------------------------   69 (138)
T ss_dssp             --------CBEEEEEEHHHHHHHHTTTCC---------------------------------------------------
T ss_pred             --------CeEEEEEEHHHHHHHHHhhcc---------------------------------------------------
Confidence                    689999999998 65432210                                                   


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcC-----CCEEE
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALG-----LRHVV  442 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~-----lr~lp  442 (482)
                                                          ....+++++|++++.++++++++.++.+.|.+.+     .+++|
T Consensus        70 ------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~  113 (138)
T 2p9m_A           70 ------------------------------------TLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLP  113 (138)
T ss_dssp             ------------------------------------CSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEE
T ss_pred             ------------------------------------cCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEE
Confidence                                                0112788999999999999999999999999999     99999


Q ss_pred             EECCCCeEEEEEeHHHhHHHHH
Q psy15912        443 VVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       443 VVD~~g~lvGIITr~DLl~~~~  464 (482)
                      |+|++|+++|+||++|++++..
T Consensus       114 Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A          114 VVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             EECTTSBEEEEEEHHHHHHHHH
T ss_pred             EECCCCeEEEEEEHHHHHHHHH
Confidence            9998999999999999998754

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.73  E-value=1.1e-17  Score=148.89  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=105.3

Q ss_pred             cchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        213 ITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       213 l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ++|+|+|.+  ++.++.+++++.++++.|.+++++.+||+|++                                     
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-------------------------------------   70 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-------------------------------------   70 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-------------------------------------
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-------------------------------------
Confidence            599999999  99999999999999999999999999999975                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                            ++++|+|+.+|+.+.+....                                                      
T Consensus        71 ------~~~~Givt~~dl~~~~~~~~------------------------------------------------------   90 (149)
T 3k2v_A           71 ------MNIIGIFTDGDLRRVFDTGV------------------------------------------------------   90 (149)
T ss_dssp             ------CBEEEEEEHHHHHHHHCSSS------------------------------------------------------
T ss_pred             ------CcEEEEecHHHHHHHHhcCC------------------------------------------------------
Confidence                  69999999999987654320                                                      


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                      .....+++++|+++++++++++++.++++.|.+.+.+++||+|++ ++
T Consensus        91 --------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~  137 (149)
T 3k2v_A           91 --------------------------------DMRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HL  137 (149)
T ss_dssp             --------------------------------CCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EE
T ss_pred             --------------------------------CcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EE
Confidence                                            001237899999999999999999999999999999999999865 99


Q ss_pred             EEEEeHHHhHH
Q psy15912        451 VGMITRKDLAR  461 (482)
Q Consensus       451 vGIITr~DLl~  461 (482)
                      +|+||++|+++
T Consensus       138 ~Giit~~dil~  148 (149)
T 3k2v_A          138 LGVVHMHDLLR  148 (149)
T ss_dssp             EEEEEHHHHTC
T ss_pred             EEEEEHHHhhc
Confidence            99999999985

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.73  E-value=3.3e-17  Score=147.76  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=105.7

Q ss_pred             chhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        214 TARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       214 ~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      +++++|++  +++++.+++++.+++++|.+++++.+||+|++                                      
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~--------------------------------------   57 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE--------------------------------------   57 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC---------------------------------------
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC--------------------------------------
Confidence            67899984  89999999999999999999999999999875                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                           ++++|+|+.+|+.+++.....                                                      
T Consensus        58 -----~~lvGiit~~Di~~~~~~~~~------------------------------------------------------   78 (156)
T 3k6e_A           58 -----KQFVGTIGLRDIMAYQMEHDL------------------------------------------------------   78 (156)
T ss_dssp             -----CBEEEEEEHHHHHHHHHHHTC------------------------------------------------------
T ss_pred             -----CcEEEEEEecchhhhhhhccc------------------------------------------------------
Confidence                 689999999999877654310                                                      


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                             ...                     .....+++++|+++++++++++++.+|.++|.+.+  .+||||++|+++
T Consensus        79 -------~~~---------------------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~  128 (156)
T 3k6e_A           79 -------SQE---------------------IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQ  128 (156)
T ss_dssp             -------CHH---------------------HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEE
T ss_pred             -------ccc---------------------cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEE
Confidence                   000                     00123799999999999999999999999998764  599999999999


Q ss_pred             EEEeHHHhHHHHHhh
Q psy15912        452 GMITRKDLARYRVWR  466 (482)
Q Consensus       452 GIITr~DLl~~~~~~  466 (482)
                      ||||++|++++..+.
T Consensus       129 GiiT~~Dil~~~~~~  143 (156)
T 3k6e_A          129 GIITRKSILKAVNAL  143 (156)
T ss_dssp             EEEEHHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHH
Confidence            999999999986543

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=3.9e-17  Score=147.87  Aligned_cols=133  Identities=16%  Similarity=0.259  Sum_probs=115.1

Q ss_pred             CCCCCccccchhhcccC---CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccc
Q psy15912        205 DPPPLSSNITARIVKSH---PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHK  281 (482)
Q Consensus       205 ~~~~~l~~l~a~dvM~~---~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (482)
                      +....+..++|+|+|.+   ++.++.+++++.++++.|.+++++.+||+|++                            
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------------------------   67 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD----------------------------   67 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT----------------------------
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------------
Confidence            34567889999999995   79999999999999999999999999999975                            


Q ss_pred             cCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHH
Q psy15912        282 RDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIIL  361 (482)
Q Consensus       282 ~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~  361 (482)
                                     ++++|+|+.+|+.+.+.....                                            
T Consensus        68 ---------------~~~~Givt~~dl~~~~~~~~~--------------------------------------------   88 (165)
T 3fhm_A           68 ---------------GVVLGIFTERDLVKAVAGQGA--------------------------------------------   88 (165)
T ss_dssp             ---------------SCEEEEEEHHHHHHHHHHHGG--------------------------------------------
T ss_pred             ---------------CeEEEEEEHHHHHHHHHhcCC--------------------------------------------
Confidence                           699999999999887654310                                            


Q ss_pred             HHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEE
Q psy15912        362 IKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHV  441 (482)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~l  441 (482)
                                                               .....+++++|.++++++++++++.+++++|.+.+.+++
T Consensus        89 -----------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l  127 (165)
T 3fhm_A           89 -----------------------------------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHV  127 (165)
T ss_dssp             -----------------------------------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEE
T ss_pred             -----------------------------------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEE
Confidence                                                     001137899999999999999999999999999999999


Q ss_pred             EEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        442 VVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       442 pVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      ||+|+ |+++|+||++|++++....
T Consensus       128 pVvd~-g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A          128 PVEEN-GRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             EEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred             EEEEC-CEEEEEEEHHHHHHHHHHH
Confidence            99997 9999999999999886433

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.72  E-value=4.5e-17  Score=139.60  Aligned_cols=121  Identities=13%  Similarity=0.193  Sum_probs=106.1

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      ++++|+|.+++.++++++++.++++.|.+.+++.+||+| +                                       
T Consensus         1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~---------------------------------------   40 (125)
T 1pbj_A            1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-E---------------------------------------   40 (125)
T ss_dssp             -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T---------------------------------------
T ss_pred             CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C---------------------------------------
Confidence            478999999999999999999999999999999999999 5                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+|+.+|+.+.+....                                                        
T Consensus        41 ----~~~~G~it~~dl~~~~~~~~--------------------------------------------------------   60 (125)
T 1pbj_A           41 ----GVRVGIVTTWDVLEAIAEGD--------------------------------------------------------   60 (125)
T ss_dssp             ----TEEEEEEEHHHHHHHHHHTC--------------------------------------------------------
T ss_pred             ----CeeEEEEeHHHHHHHHhcCC--------------------------------------------------------
Confidence                59999999999987654320                                                        


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                    .....+++++|++++.++++++++.++.+.|.+.+.+++||+|+ |+++|
T Consensus        61 ------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~G  109 (125)
T 1pbj_A           61 ------------------------------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIG  109 (125)
T ss_dssp             ------------------------------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEE
T ss_pred             ------------------------------cccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEE
Confidence                                          00112789999999999999999999999999999999999987 99999


Q ss_pred             EEeHHHhHHHHH
Q psy15912        453 MITRKDLARYRV  464 (482)
Q Consensus       453 IITr~DLl~~~~  464 (482)
                      +||++|++++..
T Consensus       110 vit~~dl~~~l~  121 (125)
T 1pbj_A          110 VISATDILRAKM  121 (125)
T ss_dssp             EEEHHHHHHHHC
T ss_pred             EEEHHHHHHHHH
Confidence            999999998753

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.72  E-value=3.2e-17  Score=145.05  Aligned_cols=139  Identities=23%  Similarity=0.366  Sum_probs=109.3

Q ss_pred             cccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        211 SNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       211 ~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      ..++|+|+|.+  +++++.+++++.++++.|.+++++.+||+|++                                   
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------------------------------   47 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-----------------------------------   47 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-----------------------------------
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-----------------------------------
Confidence            35899999998  89999999999999999999999999999975                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              ++++|+|+.+|+...+....                                                    
T Consensus        48 --------~~~~G~vt~~dl~~~~~~~~----------------------------------------------------   67 (152)
T 4gqw_A           48 --------WKLVGLVSDYDLLALDSGDS----------------------------------------------------   67 (152)
T ss_dssp             --------CBEEEEEEHHHHTTCC--------------------------------------------------------
T ss_pred             --------CeEEEEEEHHHHHHhhcccC----------------------------------------------------
Confidence                    69999999999865332110                                                    


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                .+..+.......           ......+++++|+++++++++++++.+++++|.+.+.+++||+|++|
T Consensus        68 ----------~~~~~~~~~~~~-----------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g  126 (152)
T 4gqw_A           68 ----------TWKTFNAVQKLL-----------SKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDG  126 (152)
T ss_dssp             ----------CCHHHHHHHTC----------------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTS
T ss_pred             ----------cccchHHHHHHH-----------HHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCC
Confidence                      000000000000           00012378999999999999999999999999999999999999899


Q ss_pred             eEEEEEeHHHhHHHHHh
Q psy15912        449 HVVGMITRKDLARYRVW  465 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~~  465 (482)
                      +++|+||++|++++...
T Consensus       127 ~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A          127 KLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             BEEEEEEHHHHHHHHHC
T ss_pred             cEEEEEEHHHHHHHHHh
Confidence            99999999999998654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.71  E-value=7.2e-17  Score=145.18  Aligned_cols=128  Identities=15%  Similarity=0.204  Sum_probs=110.2

Q ss_pred             CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      .+..++|+|+|.++ +++.+++++.++++.|.+++++.+||+|++                                   
T Consensus        13 ~l~~~~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----------------------------------   56 (159)
T 3fv6_A           13 KLKKLQVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-----------------------------------   56 (159)
T ss_dssp             HHTTCBGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-----------------------------------
T ss_pred             HHhhCCHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----------------------------------
Confidence            35678999999985 599999999999999999999999999975                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              ++++|+|+.+|+...+....                                                    
T Consensus        57 --------~~~~Givt~~dl~~~~~~~~----------------------------------------------------   76 (159)
T 3fv6_A           57 --------AVLVGVLSRKDLLRASIGQQ----------------------------------------------------   76 (159)
T ss_dssp             --------SCEEEEEEHHHHHHHHTSCS----------------------------------------------------
T ss_pred             --------CcEEEEEeHHHHHHHhhccC----------------------------------------------------
Confidence                    68999999999987653210                                                    


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                                        .....+++++|.+  +++++++++++.+|+++|.+.+.+++||+|+
T Consensus        77 ----------------------------------~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  122 (159)
T 3fv6_A           77 ----------------------------------ELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD  122 (159)
T ss_dssp             ----------------------------------CTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE
T ss_pred             ----------------------------------cccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence                                              0012378999998  8899999999999999999999999999998


Q ss_pred             CC---eEEEEEeHHHhHHHHHhh
Q psy15912        447 NN---HVVGMITRKDLARYRVWR  466 (482)
Q Consensus       447 ~g---~lvGIITr~DLl~~~~~~  466 (482)
                      +|   +++|+||++|++++...-
T Consensus       123 ~g~~~~~vGiit~~dil~~l~~~  145 (159)
T 3fv6_A          123 TDKGFEVIGRVTKTNMTKILVSL  145 (159)
T ss_dssp             CSSSEEEEEEEEHHHHHHHHHHH
T ss_pred             CCcceeEEEEEEHHHHHHHHHHH
Confidence            88   999999999999986543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.71  E-value=3.6e-17  Score=147.46  Aligned_cols=132  Identities=19%  Similarity=0.260  Sum_probs=109.8

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      .++|+|+|.+++.++.+++++.++++.|.+++++.+||+|++                                      
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~--------------------------------------   45 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN--------------------------------------   45 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------------------------------------
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            578999999999999999999999999999999999999975                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                           ++++|+|+.+|+...+.......                                                ... 
T Consensus        46 -----~~lvGivt~~dl~~~~~~~~~~~------------------------------------------------~~~-   71 (160)
T 2o16_A           46 -----KKLLGIVSQRDLLAAQESSLQRS------------------------------------------------AQG-   71 (160)
T ss_dssp             -----CBEEEEEEHHHHHHHHHHHCC------------------------------------------------------
T ss_pred             -----CcEEEEEeHHHHHHHHHHhhccc------------------------------------------------ccc-
Confidence                 68999999999987765431000                                                000 


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                                                   .......+++++|+++++++++++++.+|.++|.+.+.+++||+|+ |+++
T Consensus        72 -----------------------------~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lv  121 (160)
T 2o16_A           72 -----------------------------DSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLV  121 (160)
T ss_dssp             ---------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEE
T ss_pred             -----------------------------cchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEE
Confidence                                         0001123789999999999999999999999999999999999987 9999


Q ss_pred             EEEeHHHhHHHHHh
Q psy15912        452 GMITRKDLARYRVW  465 (482)
Q Consensus       452 GIITr~DLl~~~~~  465 (482)
                      |+||++|++++...
T Consensus       122 Giit~~dil~~~~~  135 (160)
T 2o16_A          122 GIITDSDFVTIAIN  135 (160)
T ss_dssp             EEECHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHH
Confidence            99999999987544

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.71  E-value=4.6e-17  Score=144.54  Aligned_cols=134  Identities=15%  Similarity=0.144  Sum_probs=111.4

Q ss_pred             CCccccchhhccc--CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCC
Q psy15912        208 PLSSNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  285 (482)
Q Consensus       208 ~~l~~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (482)
                      ..+..++|+|+|.  +++.++.+++++.++++.|.+++++.+||+|++                                
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~--------------------------------   57 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM--------------------------------   57 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------------------------------
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC--------------------------------
Confidence            3467899999999  569999999999999999999999999999975                                


Q ss_pred             CCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhh
Q psy15912        286 HKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHK  365 (482)
Q Consensus       286 ~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~  365 (482)
                                 ++++|+|+.+|+...+.....                                                
T Consensus        58 -----------~~~~Givt~~dl~~~~~~~~~------------------------------------------------   78 (150)
T 3lqn_A           58 -----------YKLHGLISTAMILDGILGLER------------------------------------------------   78 (150)
T ss_dssp             -----------CBEEEEEEHHHHHHHTBCSSS------------------------------------------------
T ss_pred             -----------CCEEEEEEHHHHHHHHHhhcc------------------------------------------------
Confidence                       699999999999876532100                                                


Q ss_pred             hhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC
Q psy15912        366 IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN  445 (482)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD  445 (482)
                                  ..                     .......+++++|+++++++++++++.++.++|.+.+.  +||||
T Consensus        79 ------------~~---------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd  123 (150)
T 3lqn_A           79 ------------IE---------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN  123 (150)
T ss_dssp             ------------BC---------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC
T ss_pred             ------------cc---------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC
Confidence                        00                     00011237899999999999999999999999999886  99999


Q ss_pred             CCCeEEEEEeHHHhHHHHHhhc
Q psy15912        446 NNNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       446 ~~g~lvGIITr~DLl~~~~~~~  467 (482)
                      ++|+++|+||++|++++.....
T Consensus       124 ~~g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A          124 EDGYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             TTCBEEEEEEHHHHHHHHHHHC
T ss_pred             CCCcEEEEEEHHHHHHHHHHHh
Confidence            8999999999999999866543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.71  E-value=3.8e-17  Score=149.09  Aligned_cols=152  Identities=22%  Similarity=0.390  Sum_probs=109.4

Q ss_pred             ccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      .++|+|+|.+  +++++.+++++.++++.|.+++++.+||+|++                                    
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~------------------------------------   46 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN------------------------------------   46 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT------------------------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC------------------------------------
Confidence            5789999998  89999999999999999999999999999975                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                             ++++|+|+.+|+.+.........    +...+    .       +                          ..
T Consensus        47 -------~~~~Givt~~dl~~~~~~~~~~~----~~~~~----~-------~--------------------------~~   78 (180)
T 3sl7_A           47 -------WTLVGVVSDYDLLALDSISGRSQ----NDTNL----F-------P--------------------------DV   78 (180)
T ss_dssp             -------CBEEEEEEHHHHTCC----------------------------------------------------------
T ss_pred             -------CeEEEEEEHHHHHhhhhhccccC----Ccccc----c-------c--------------------------cc
Confidence                   69999999999975322110000    00000    0       0                          00


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                      ...|..    ...+.....              .....+++++|+++++++++++++.+|+++|.+.+.+++||+|++|+
T Consensus        79 ~~~~~~----~~~~~~~~~--------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~  140 (180)
T 3sl7_A           79 DSTWKT----FNELQKLIS--------------KTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGK  140 (180)
T ss_dssp             --CCCS----HHHHHHHHH--------------TTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCB
T ss_pred             cchhhh----hHHHHHHHh--------------ccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCe
Confidence            000000    000000000              01123799999999999999999999999999999999999998999


Q ss_pred             EEEEEeHHHhHHHHHh
Q psy15912        450 VVGMITRKDLARYRVW  465 (482)
Q Consensus       450 lvGIITr~DLl~~~~~  465 (482)
                      ++|+||++|++++...
T Consensus       141 ~vGiit~~dil~~~~~  156 (180)
T 3sl7_A          141 LIGILTRGNVVRAALQ  156 (180)
T ss_dssp             EEEEEEHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHH
Confidence            9999999999998654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.71  E-value=1.2e-16  Score=143.23  Aligned_cols=142  Identities=15%  Similarity=0.164  Sum_probs=112.2

Q ss_pred             CCccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCe-eeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        208 PLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNG-FPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       208 ~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~-fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      .....++|+|+|.+++.++.+++++.++++.|.+++++. +||+|++                                 
T Consensus        11 ~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~---------------------------------   57 (157)
T 1o50_A           11 HHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN---------------------------------   57 (157)
T ss_dssp             TTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT---------------------------------
T ss_pred             hhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC---------------------------------
Confidence            456789999999999999999999999999999999999 9999863                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                                 +++|+|+..|+...+.....                                                .
T Consensus        58 -----------~~vGivt~~dl~~~~~~~~~------------------------------------------------~   78 (157)
T 1o50_A           58 -----------KLVGMIPVMHLLKVSGFHFF------------------------------------------------G   78 (157)
T ss_dssp             -----------EEEEEEEHHHHHHHHHHHHH------------------------------------------------C
T ss_pred             -----------EEEEEEEHHHHHHHHhhhHH------------------------------------------------h
Confidence                       89999999999876543200                                                0


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                      +..         ....|.....              .....+++++|++ ++++++++++.+|.++|.+.+.+++||+|+
T Consensus        79 ~~~---------~~~~~~~~~~--------------~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  134 (157)
T 1o50_A           79 FIP---------KEELIRSSMK--------------RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE  134 (157)
T ss_dssp             CCC----------------CCC--------------CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             hhc---------cHHHHHHHHH--------------HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC
Confidence            000         0000000000              0122478999999 999999999999999999999999999998


Q ss_pred             CCeEEEEEeHHHhHHHHHh
Q psy15912        447 NNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~~  465 (482)
                      +|+++|+||++|++++...
T Consensus       135 ~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A          135 KGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             TSCEEEEEEHHHHHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHHHH
Confidence            8999999999999987653

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.70  E-value=1.8e-17  Score=148.85  Aligned_cols=119  Identities=18%  Similarity=0.319  Sum_probs=103.4

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +..++|+|+|++  +++++++++++.++++.|.+++++.+||+|++                                  
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~----------------------------------   80 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED----------------------------------   80 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------------------------------
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----------------------------------
Confidence            456899999997  79999999999999999999999999999875                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              .++++|+|+.+|+...+...                                                    
T Consensus        81 --------~~~lvGivt~~dl~~~~~~~----------------------------------------------------  100 (156)
T 3oi8_A           81 --------KDEVLGILHAKDLLKYMFNP----------------------------------------------------  100 (156)
T ss_dssp             --------TTCEEEEEEGGGGGGGSSCG----------------------------------------------------
T ss_pred             --------CCcEEEEEEHHHHHHHHHcC----------------------------------------------------
Confidence                    14899999999975432110                                                    


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                           ...+++++|.+ ++++++++++.+|+++|.+.+.+++||+|++
T Consensus       101 -------------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~  142 (156)
T 3oi8_A          101 -------------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEY  142 (156)
T ss_dssp             -------------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTT
T ss_pred             -------------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCC
Confidence                                                 11268899976 8899999999999999999999999999999


Q ss_pred             CeEEEEEeHHHhH
Q psy15912        448 NHVVGMITRKDLA  460 (482)
Q Consensus       448 g~lvGIITr~DLl  460 (482)
                      |+++||||++|++
T Consensus       143 g~~~Givt~~Dil  155 (156)
T 3oi8_A          143 GGTSGLVTFEDII  155 (156)
T ss_dssp             SSEEEEEEHHHHC
T ss_pred             CCEEEEEEHHHhc
Confidence            9999999999986

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.70  E-value=8.7e-17  Score=151.66  Aligned_cols=123  Identities=12%  Similarity=0.140  Sum_probs=107.8

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhC---CCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKAT---SHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~---~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      ..+|+++|++++++++++.++.++++.|++.   +++.+||+|++                                   
T Consensus        53 ~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-----------------------------------   97 (205)
T 3kxr_A           53 ENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-----------------------------------   97 (205)
T ss_dssp             TTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-----------------------------------
T ss_pred             cchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-----------------------------------
Confidence            4589999999999999999999999999986   67899999975                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              ++++|+|+.+||+..   .                                                     
T Consensus        98 --------~~lvGivt~~dll~~---~-----------------------------------------------------  113 (205)
T 3kxr_A           98 --------DKYLGTVRRYDIFKH---E-----------------------------------------------------  113 (205)
T ss_dssp             --------CBEEEEEEHHHHTTS---C-----------------------------------------------------
T ss_pred             --------CeEEEEEEHHHHHhC---C-----------------------------------------------------
Confidence                    699999999997421   0                                                     


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                                          ...+++++|++++++|++++++.++.++|++.+++++||||++|
T Consensus       114 ------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g  157 (205)
T 3kxr_A          114 ------------------------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAG  157 (205)
T ss_dssp             ------------------------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTS
T ss_pred             ------------------------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC
Confidence                                                01278999999999999999999999999999999999999999


Q ss_pred             eEEEEEeHHHhHHHHHhhccc
Q psy15912        449 HVVGMITRKDLARYRVWRHGG  469 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~~~~~~  469 (482)
                      +++||||+.|+++.......+
T Consensus       158 ~lvGiIT~~Dil~~i~~e~~e  178 (205)
T 3kxr_A          158 ELIGRVTLRAATALVREHYEA  178 (205)
T ss_dssp             BEEEEEEHHHHHHHHHHHHC-
T ss_pred             eEEEEEEHHHHHHHHHHHHHH
Confidence            999999999999987655443

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.70  E-value=4.2e-17  Score=141.62  Aligned_cols=125  Identities=21%  Similarity=0.341  Sum_probs=105.3

Q ss_pred             CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      .+..++++|+|.+++.++++++++.++++.|.+++++.+||+|++                                   
T Consensus         4 ~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------------------------------   48 (133)
T 1y5h_A            4 PFTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDD-----------------------------------   48 (133)
T ss_dssp             ----CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----------------------------------
T ss_pred             hhhhcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-----------------------------------
Confidence            345679999999999999999999999999999999999999865                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHH-HHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        289 DASRKESPGRLVGLILRSQLII-LIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~-~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              ++++|+|+.+|+.. .+....                                                   
T Consensus        49 --------~~~~Givt~~dl~~~~~~~~~---------------------------------------------------   69 (133)
T 1y5h_A           49 --------DRLHGMLTDRDIVIKGLAAGL---------------------------------------------------   69 (133)
T ss_dssp             --------GBEEEEEEHHHHHHTTGGGTC---------------------------------------------------
T ss_pred             --------CeEEEEEeHHHHHHHHHhcCC---------------------------------------------------
Confidence                    69999999999873 322110                                                   


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                         .....+++++|+++++++++++++.++.+.|.+.+.+++||+|+ 
T Consensus        70 -----------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-  113 (133)
T 1y5h_A           70 -----------------------------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-  113 (133)
T ss_dssp             -----------------------------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-
T ss_pred             -----------------------------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-
Confidence                                               00113789999999999999999999999999999999999986 


Q ss_pred             CeEEEEEeHHHhHHHH
Q psy15912        448 NHVVGMITRKDLARYR  463 (482)
Q Consensus       448 g~lvGIITr~DLl~~~  463 (482)
                      |+++|+||++|++++.
T Consensus       114 g~~~Giit~~dil~~l  129 (133)
T 1y5h_A          114 HRLVGIVTEADIARHL  129 (133)
T ss_dssp             TEEEEEEEHHHHHHTC
T ss_pred             CEEEEEEEHHHHHHHH
Confidence            9999999999999764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.69  E-value=1.3e-16  Score=146.32  Aligned_cols=124  Identities=18%  Similarity=0.203  Sum_probs=106.8

Q ss_pred             ccccchhhccc--CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +..++|+|+|+  +++++++++.++.++++.|++++++.+||+|++                                  
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----------------------------------   78 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS----------------------------------   78 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS----------------------------------
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC----------------------------------
Confidence            45678999997  478999999999999999999999999999864                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              .++++|+|+.+|+...+....                                                   
T Consensus        79 --------~~~lvGivt~~Dl~~~~~~~~---------------------------------------------------   99 (173)
T 3ocm_A           79 --------LDEVVGIGRAKDLVADLITEG---------------------------------------------------   99 (173)
T ss_dssp             --------TTSEEEEEEHHHHHHHHHHHS---------------------------------------------------
T ss_pred             --------CCCEEEEEEHHHHHHHHhcCC---------------------------------------------------
Confidence                    258999999999987654320                                                   


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                                                            ..+++  |.+++++|++++++.+++++|.+.+.+++||+|++
T Consensus       100 --------------------------------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~  139 (173)
T 3ocm_A          100 --------------------------------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEF  139 (173)
T ss_dssp             --------------------------------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTT
T ss_pred             --------------------------------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCC
Confidence                                                  01566  45778999999999999999999999999999999


Q ss_pred             CeEEEEEeHHHhHHHHHhh
Q psy15912        448 NHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       448 g~lvGIITr~DLl~~~~~~  466 (482)
                      |+++||||++|+++.....
T Consensus       140 g~lvGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          140 GAIEGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             CCEEEEECHHHHHHHHHCC
T ss_pred             CCEEEEEeHHHHHHHHhCc
Confidence            9999999999999987643

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.69  E-value=8.4e-17  Score=157.38  Aligned_cols=197  Identities=15%  Similarity=0.248  Sum_probs=130.5

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ...+++|+|.+++.++++++++.++++.|.+.+.+.+||+|++                                     
T Consensus        58 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-------------------------------------  100 (282)
T 2yzq_A           58 DEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-------------------------------------  100 (282)
T ss_dssp             ------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-------------------------------------
T ss_pred             ccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------------------------------
Confidence            3568999999999999999999999999999999999999975                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHH-HHHhh-hhccC-----CC------CCCccchh---hhhhhccccccccCCCCccccchh
Q psy15912        291 SRKESPGRLVGLILRSQLII-LIKHK-IYKEN-----QN------WPDDQLSS---EIFHAEYRCRPRIWSPGRLVGLIL  354 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~-~l~~~-~~~~~-----~~------~p~~~~~~---~~~~~~~~~~~~~~~~~~~~G~i~  354 (482)
                            ++++|+++.+|+.+ .+... .....     ..      .++..+..   .+.....++.|++++.+.++|+++
T Consensus       101 ------~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit  174 (282)
T 2yzq_A          101 ------GKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVD  174 (282)
T ss_dssp             ------SCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEE
T ss_pred             ------CEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEE
Confidence                  68999999999988 65432 11110     00      11222221   223344566888888889999999


Q ss_pred             hHHHHH------HHHhh-hhccC-CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCH
Q psy15912        355 RSQLII------LIKHK-IYKEN-QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSL  426 (482)
Q Consensus       355 ~~~l~~------~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l  426 (482)
                      .+|+..      .+... ..... ..|-        .......+..      .........+++++|+++++++++++++
T Consensus       175 ~~dl~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~~~~~~~v~~im~~~~~~v~~~~~l  240 (282)
T 2yzq_A          175 ETDLLRDSEIVRIMKSTELAASSEEEWI--------LESHPTLLFE------KFELQLPNKPVAEIMTRDVIVATPHMTV  240 (282)
T ss_dssp             GGGGGGCGGGCC----------------------------------------------CCCBGGGTCBSSCCCBCTTSBH
T ss_pred             HHHHhhhhhhhhhhccchhhhhhhhhhh--------cccchHHHHh------HhhhhhccCCHHHhcCCCCceeCCCCCH
Confidence            999872      22100 00000 0000        0000000000      0000112358999999999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        427 PRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       427 ~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .+|.++|.+.+++++||+|++|+++|+||++|++++..
T Consensus       241 ~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          241 HEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGC
T ss_pred             HHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHH
Confidence            99999999999999999998889999999999998653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.69  E-value=2.5e-16  Score=137.18  Aligned_cols=122  Identities=16%  Similarity=0.273  Sum_probs=105.8

Q ss_pred             cchhhccc---CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        213 ITARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       213 l~a~dvM~---~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ++++|+|.   +++.++.+++++.++++.|.+++++.+||+| +                                    
T Consensus         6 ~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~------------------------------------   48 (135)
T 2rc3_A            6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D------------------------------------   48 (135)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T------------------------------------
T ss_pred             eeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C------------------------------------
Confidence            48999999   8999999999999999999999999999998 4                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                             ++++|+|+.+|+.+.+....                                                     
T Consensus        49 -------~~~~Givt~~dl~~~~~~~~-----------------------------------------------------   68 (135)
T 2rc3_A           49 -------EKLVGILTERDFSRKSYLLD-----------------------------------------------------   68 (135)
T ss_dssp             -------TEEEEEEEHHHHHHHGGGSS-----------------------------------------------------
T ss_pred             -------CEEEEEEehHHHHHHHHHcC-----------------------------------------------------
Confidence                   59999999999875332110                                                     


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                       .                               .....+++++|++++.++++++++.++.+.|.+.+.+++||+| +|+
T Consensus        69 -~-------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~  115 (135)
T 2rc3_A           69 -K-------------------------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGK  115 (135)
T ss_dssp             -S-------------------------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTE
T ss_pred             -C-------------------------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCE
Confidence             0                               0012378999999999999999999999999999999999999 799


Q ss_pred             EEEEEeHHHhHHHHH
Q psy15912        450 VVGMITRKDLARYRV  464 (482)
Q Consensus       450 lvGIITr~DLl~~~~  464 (482)
                      ++|+||++|++++..
T Consensus       116 ~~Giit~~dll~~~~  130 (135)
T 2rc3_A          116 VIGLLSIGDLVKDAI  130 (135)
T ss_dssp             EEEEEEHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHH
Confidence            999999999998764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.69  E-value=2.7e-16  Score=144.24  Aligned_cols=154  Identities=29%  Similarity=0.447  Sum_probs=113.0

Q ss_pred             CCccccchhhcccCC----eeEe--cCCCCHHHHHHHHHhCCCCeeeEe--cCCCCCCCCCCCccccCCCCCCCCCCCCc
Q psy15912        208 PLSSNITARIVKSHP----VICL--RPLETVGNIIDVLKATSHNGFPIV--DVEPMTKHSSDGAEQSSAGSTDSHKGDTS  279 (482)
Q Consensus       208 ~~l~~l~a~dvM~~~----~~~l--~~~~~i~~~~~~l~~~~~~~fPVV--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (482)
                      ..+..++|+|+|.+.    ++++  .+++++.++++.|.+++++.+||+  |++                          
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~--------------------------   59 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES--------------------------   59 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT--------------------------
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC--------------------------
Confidence            456789999999987    7888  999999999999999999999999  443                          


Q ss_pred             cccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHH
Q psy15912        280 HKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLI  359 (482)
Q Consensus       280 ~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~  359 (482)
                                       ++++|+|+..|+...+........ ...+                     +..          
T Consensus        60 -----------------~~lvGiit~~dl~~~~~~~~~~~~-~~~~---------------------~~~----------   90 (185)
T 2j9l_A           60 -----------------QRLVGFVLRRDLIISIENARKKQD-GVVS---------------------TSI----------   90 (185)
T ss_dssp             -----------------CBEEEEEEHHHHHHHHHHHHTSCS-CCCT---------------------TCE----------
T ss_pred             -----------------CeEEEEEEHHHHHHHHHhhcccCC-Cccc---------------------cce----------
Confidence                             799999999999887654310000 0000                     000          


Q ss_pred             HHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCC
Q psy15912        360 ILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLR  439 (482)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr  439 (482)
                                           ..+....+..         ........+++++|+++++++++++++.+|+++|.+.+.+
T Consensus        91 ---------------------~~~~~~~~~~---------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~  140 (185)
T 2j9l_A           91 ---------------------IYFTEHSPPL---------PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLR  140 (185)
T ss_dssp             ---------------------EECSSSCCCC---------CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCS
T ss_pred             ---------------------eecccCCccc---------ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCc
Confidence                                 0000000000         0001123479999999999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912        440 HVVVVNNNNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       440 ~lpVVD~~g~lvGIITr~DLl~~~~~~~  467 (482)
                      ++||+| +|+++|+||++|++++.....
T Consensus       141 ~l~Vvd-~g~~vGiit~~dll~~l~~~~  167 (185)
T 2j9l_A          141 QCLVTH-NGRLLGIITKKDVLKHIAQMA  167 (185)
T ss_dssp             EEEEEE-TTEEEEEEEHHHHHHHHHHHC
T ss_pred             EEEEEE-CCEEEEEEEHHHHHHHHHHhh
Confidence            999998 899999999999999866443

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=140.75  Aligned_cols=134  Identities=18%  Similarity=0.316  Sum_probs=108.8

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ...++|+|+|.+++.++.+++++.++++.|.+++++.+||+|+++                                   
T Consensus        10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~-----------------------------------   54 (164)
T 2pfi_A           10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTE-----------------------------------   54 (164)
T ss_dssp             CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTT-----------------------------------
T ss_pred             ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCC-----------------------------------
Confidence            456899999999999999999999999999999999999999620                                   


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                            +++++|+|+..|+...+.......                                                  
T Consensus        55 ------~~~~~Givt~~dl~~~~~~~~~~~--------------------------------------------------   78 (164)
T 2pfi_A           55 ------SQILVGIVQRAQLVQALQAEPPSR--------------------------------------------------   78 (164)
T ss_dssp             ------TCBEEEEEEHHHHHHHHHC-------------------------------------------------------
T ss_pred             ------CCEEEEEEEHHHHHHHHHhhcccc--------------------------------------------------
Confidence                  269999999999987664321000                                                  


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccC------ceeeeCCCCHHHHHHHHHHcCCCEEEE
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTS------PFSVQDSTSLPRVFKLFRALGLRHVVV  443 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~------p~~V~~~~~l~~a~~~f~~~~lr~lpV  443 (482)
                                       .+               ....+++++|.++      ++++++++++.++.++|.+.+.+++||
T Consensus        79 -----------------~~---------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpV  126 (164)
T 2pfi_A           79 -----------------AP---------------GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFV  126 (164)
T ss_dssp             ----------------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEE
T ss_pred             -----------------CC---------------cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEE
Confidence                             00               0012566777765      789999999999999999999999999


Q ss_pred             ECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912        444 VNNNNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       444 VD~~g~lvGIITr~DLl~~~~~~~  467 (482)
                      +| +|+++|+||++|++++.....
T Consensus       127 vd-~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          127 TS-RGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             EE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred             EE-CCEEEEEEEHHHHHHHHHhhh
Confidence            98 799999999999999865443

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.68  E-value=2.9e-16  Score=157.03  Aligned_cols=178  Identities=13%  Similarity=0.218  Sum_probs=134.5

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      ++.++|.++++++++++++.++++.|.+++++.+||+|+++.                                      
T Consensus       115 ~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~--------------------------------------  156 (323)
T 3t4n_C          115 RALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEE--------------------------------------  156 (323)
T ss_dssp             HHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTT--------------------------------------
T ss_pred             HHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCC--------------------------------------
Confidence            455667889999999999999999999999999999997621                                      


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhh---------ccC---C------CCCCccch---hhhhhhccccccccCCCCccccc
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIY---------KEN---Q------NWPDDQLS---SEIFHAEYRCRPRIWSPGRLVGL  352 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~---------~~~---~------~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~G~  352 (482)
                      .+..+++|+++.+|+++.+.....         .+.   .      ..+++.+.   ..+.....++.|+++++|.++|+
T Consensus       157 ~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Gi  236 (323)
T 3t4n_C          157 THREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINV  236 (323)
T ss_dssp             TCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEE
T ss_pred             CCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEE
Confidence            001249999999999987653210         011   0      11222222   12345567788999999999999


Q ss_pred             hhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc------CceeeeCCCCH
Q psy15912        353 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT------SPFSVQDSTSL  426 (482)
Q Consensus       353 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~------~p~~V~~~~~l  426 (482)
                      ++++|++..+....+..                                   ...+++++|++      +++++++++++
T Consensus       237 it~~dl~~~~~~~~~~~-----------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l  281 (323)
T 3t4n_C          237 YEAYDVLGLIKGGIYND-----------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKL  281 (323)
T ss_dssp             EETTHHHHHHHTTHHHH-----------------------------------TTSBHHHHGGGSCTTCCCCEEECTTCBH
T ss_pred             EeHHHHHHHHhhchhhh-----------------------------------ccCCHHHHHhhccccCCCCEEECCCCCH
Confidence            99999998776443221                                   12378899988      78999999999


Q ss_pred             HHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        427 PRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       427 ~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++.+.|.+.+.+++||+|++|+++||||++|++++..
T Consensus       282 ~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~  319 (323)
T 3t4n_C          282 STIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  319 (323)
T ss_dssp             HHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            99999999999999999998999999999999999865

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.68  E-value=9.9e-17  Score=161.01  Aligned_cols=175  Identities=15%  Similarity=0.253  Sum_probs=133.1

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecC-CCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDV-EPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      +++++|.+++.++.+++++.++++.|.+++++.+||+|+ +                                       
T Consensus       119 ~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~---------------------------------------  159 (330)
T 2v8q_E          119 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES---------------------------------------  159 (330)
T ss_dssp             HHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT---------------------------------------
T ss_pred             HHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC---------------------------------------
Confidence            346789999999999999999999999999999999997 4                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhc-------c--------C--C----CCCCccchh---hhhhhccccccccCCCCc
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYK-------E--------N--Q----NWPDDQLSS---EIFHAEYRCRPRIWSPGR  348 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~-------~--------~--~----~~p~~~~~~---~~~~~~~~~~~~~~~~~~  348 (482)
                          |+++|+|+.+|+++.+......       .        .  .    ..+++.+..   .+.....++.|++++++.
T Consensus       160 ----~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~  235 (330)
T 2v8q_E          160 ----GNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGR  235 (330)
T ss_dssp             ----CCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSB
T ss_pred             ----CcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCc
Confidence                6899999999999877532110       0        0  0    012222221   233455677888888899


Q ss_pred             cccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccc------ccCceeeeC
Q psy15912        349 LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFM------NTSPFSVQD  422 (482)
Q Consensus       349 ~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im------~~~p~~V~~  422 (482)
                      ++|+++.+|+........+..                                   ...++.++|      .++++++++
T Consensus       236 l~Giit~~dl~~~~~~~~~~~-----------------------------------~~~~v~~~~~~~~~~~~~~~~v~~  280 (330)
T 2v8q_E          236 VVDIYSKFDVINLAAEKTYNN-----------------------------------LDVSVTKALQHRSHYFEGVLKCYL  280 (330)
T ss_dssp             EEEEEEGGGTGGGGGSSCCCC-----------------------------------CSSBHHHHGGGCCSCCCSCCEECT
T ss_pred             EEEEEEHHHHHHHHhcccccc-----------------------------------ccCcHHHHHhccccccCCCeEECC
Confidence            999999998874432211100                                   012566666      588999999


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        423 STSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       423 ~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      ++++.++.+.|.+.+.+++||+|++|+++|+||++|++++....
T Consensus       281 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          281 HETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             CCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhh
Confidence            99999999999999999999999889999999999999986543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.68  E-value=2.9e-16  Score=140.26  Aligned_cols=133  Identities=20%  Similarity=0.203  Sum_probs=108.6

Q ss_pred             CccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        209 LSSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       209 ~l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      .+..++++|+|.+  ++.++.+++++.++++.|.+++++.+||+|++                                 
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~---------------------------------   53 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS---------------------------------   53 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT---------------------------------
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC---------------------------------
Confidence            4667899999997  89999999999999999999999999999975                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                                ++++|+|+..|+...+.....                                                 
T Consensus        54 ----------~~~~Givt~~dl~~~~~~~~~-------------------------------------------------   74 (157)
T 2emq_A           54 ----------YKLHGLISMTMMMDAILGLER-------------------------------------------------   74 (157)
T ss_dssp             ----------CCEEEEEEHHHHHHHSBCSSS-------------------------------------------------
T ss_pred             ----------CCEEEEeeHHHHHHHHhcccc-------------------------------------------------
Confidence                      689999999998765432100                                                 


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                 ++.                     ......+++++|+++++++++++++.++++.|.+.+.  +||+|+
T Consensus        75 -----------~~~---------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~  120 (157)
T 2emq_A           75 -----------IEF---------------------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND  120 (157)
T ss_dssp             -----------BCG---------------------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS
T ss_pred             -----------cch---------------------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC
Confidence                       000                     0001237899999999999999999999999999987  999998


Q ss_pred             CCeEEEEEeHHHhHHHHHhhc
Q psy15912        447 NNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~~~~  467 (482)
                      +|+++|+||++|++++.....
T Consensus       121 ~g~~~Giit~~dil~~~~~~~  141 (157)
T 2emq_A          121 DGYFAGIFTRREVLKQLNKQL  141 (157)
T ss_dssp             SSSEEEEEEHHHHHHHHHHTT
T ss_pred             CCeEEEEEEHHHHHHHHHHHh
Confidence            899999999999999865443

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.67  E-value=4.6e-16  Score=143.40  Aligned_cols=125  Identities=21%  Similarity=0.277  Sum_probs=109.0

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      .++|+|+|.++++++.+++++.++++.|.+++++.+||+|++                                      
T Consensus         8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~--------------------------------------   49 (184)
T 1pvm_A            8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------------------------------------   49 (184)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT--------------------------------------
T ss_pred             ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------------------------------------
Confidence            479999999999999999999999999999999999999865                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                           ++++|+|+.+|++..+....                                                       
T Consensus        50 -----g~~vGivt~~dl~~~~~~~~-------------------------------------------------------   69 (184)
T 1pvm_A           50 -----GNDVGLLSERSIIKRFIPRN-------------------------------------------------------   69 (184)
T ss_dssp             -----SCEEEEEEHHHHHHHTGGGC-------------------------------------------------------
T ss_pred             -----CcEEEEEeHHHHHHHHhhcc-------------------------------------------------------
Confidence                 68999999999976543210                                                       


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                                                    ......+++++|.++++++++++++.+|+++|.+.+.+++||+|++|+++
T Consensus        70 ------------------------------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~  119 (184)
T 1pvm_A           70 ------------------------------KKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVV  119 (184)
T ss_dssp             ------------------------------CCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEE
T ss_pred             ------------------------------cCcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEE
Confidence                                          00012378999999999999999999999999999999999999889999


Q ss_pred             EEEeHHHhHHHHH
Q psy15912        452 GMITRKDLARYRV  464 (482)
Q Consensus       452 GIITr~DLl~~~~  464 (482)
                      |+||++|++++..
T Consensus       120 Givt~~dll~~~~  132 (184)
T 1pvm_A          120 GIVTLTDLSRYLS  132 (184)
T ss_dssp             EEEEHHHHTTTSC
T ss_pred             EEEEHHHHHHHHH
Confidence            9999999998644

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.67  E-value=9.4e-17  Score=158.59  Aligned_cols=175  Identities=14%  Similarity=0.246  Sum_probs=139.5

Q ss_pred             CCCccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        207 PPLSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       207 ~~~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      .......+|+|+|.++++++.+++++.++++.|.+++++.+||+| +                                 
T Consensus        14 ~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~---------------------------------   59 (296)
T 3ddj_A           14 NLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E---------------------------------   59 (296)
T ss_dssp             CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S---------------------------------
T ss_pred             hhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-C---------------------------------
Confidence            345667899999999999999999999999999999999999998 4                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhh----------------hccC------CCCCCccch---hhhhhhcccccc
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKI----------------YKEN------QNWPDDQLS---SEIFHAEYRCRP  341 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~----------------~~~~------~~~p~~~~~---~~~~~~~~~~~~  341 (482)
                                 +++|++|.+|+...+....                -.+.      ...+++.+.   ..+.....++.|
T Consensus        60 -----------~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lp  128 (296)
T 3ddj_A           60 -----------KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLP  128 (296)
T ss_dssp             -----------SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEE
T ss_pred             -----------eEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEE
Confidence                       7999999999987663110                0000      011222221   124456677889


Q ss_pred             ccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeee
Q psy15912        342 RIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQ  421 (482)
Q Consensus       342 ~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~  421 (482)
                      ++++++.++|+++.+|+...+...                                      ....+++++|++++++++
T Consensus       129 Vvd~~~~lvGivt~~dl~~~~~~~--------------------------------------~~~~~v~~~m~~~~~~v~  170 (296)
T 3ddj_A          129 VVDINDKPVGIVTEREFLLLYKDL--------------------------------------DEIFPVKVFMSTKVQTIY  170 (296)
T ss_dssp             EECTTSCEEEEEEHHHHGGGGGGS--------------------------------------CCCCBHHHHSBCSCCCEE
T ss_pred             EEcCCCcEEEEEeHHHHHHhhhcc--------------------------------------cccccHHHhhcCCCeEEC
Confidence            998889999999999887443211                                      011278999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        422 DSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       422 ~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++++.++.+.|.+.+.+++||+|++|+++|+||++|++++..
T Consensus       171 ~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          171 KEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            9999999999999999999999999999999999999998755

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.67  E-value=1.5e-16  Score=153.44  Aligned_cols=60  Identities=20%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             cccccccccc-cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        405 FTVKLNLFMN-TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       405 ~~i~v~~im~-~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ...+++++|+ +++.++++++++.++.++|.+.+++++||+|++|+++|+||++|++++..
T Consensus       183 ~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          183 QSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHK  243 (245)
T ss_dssp             GGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC-------
T ss_pred             cCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence            3457999999 89999999999999999999999999999999999999999999998754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.66  E-value=2.3e-16  Score=141.62  Aligned_cols=133  Identities=17%  Similarity=0.122  Sum_probs=110.1

Q ss_pred             CccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        209 LSSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       209 ~l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      .+..++|+|+|.+  ++.++.+++++.++++.|.+++++.+||+|++                                 
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~---------------------------------   56 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS---------------------------------   56 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT---------------------------------
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC---------------------------------
Confidence            3557899999998  89999999999999999999999999999975                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                                ++++|+|+..|+...+.....                                                 
T Consensus        57 ----------~~lvGivt~~dl~~~~~~~~~-------------------------------------------------   77 (159)
T 1yav_A           57 ----------YRLHGLIGTNMIMNSIFGLER-------------------------------------------------   77 (159)
T ss_dssp             ----------CBEEEEEEHHHHHHHHBCSSS-------------------------------------------------
T ss_pred             ----------CCEEEEeEHHHHHHHhhhhcc-------------------------------------------------
Confidence                      699999999999876533100                                                 


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                 +..    .                 .....+++++|++++.++++++++.++.++|.+.+.  +||+|+
T Consensus        78 -----------~~~----~-----------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~  123 (159)
T 1yav_A           78 -----------IEF----E-----------------KLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND  123 (159)
T ss_dssp             -----------BCG----G-----------------GTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred             -----------cch----h-----------------hhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence                       000    0                 001237899999999999999999999999998876  999998


Q ss_pred             CCeEEEEEeHHHhHHHHHhhc
Q psy15912        447 NNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~~~~  467 (482)
                      +|+++|+||++|++++.....
T Consensus       124 ~g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A          124 EQVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             TCBEEEEEEHHHHHHHHHHHC
T ss_pred             CCeEEEEEEHHHHHHHHHHHH
Confidence            999999999999999865443

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.66  E-value=6.9e-16  Score=135.31  Aligned_cols=126  Identities=18%  Similarity=0.326  Sum_probs=105.7

Q ss_pred             cccchhh---cccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        211 SNITARI---VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       211 ~~l~a~d---vM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      ...+++|   +|.+++.++.+++++.++++.|.+++++.+||+|++                                  
T Consensus         6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----------------------------------   51 (144)
T 2nyc_A            6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN----------------------------------   51 (144)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------------------------
T ss_pred             hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC----------------------------------
Confidence            3457888   888999999999999999999999999999999975                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                               ++++|+|+.+|+...+.....                                                  
T Consensus        52 ---------~~~~Givt~~dl~~~~~~~~~--------------------------------------------------   72 (144)
T 2nyc_A           52 ---------GYLINVYEAYDVLGLIKGGIY--------------------------------------------------   72 (144)
T ss_dssp             ---------CBEEEEEEHHHHHHHHHTC----------------------------------------------------
T ss_pred             ---------CcEEEEEcHHHHHHHhccccc--------------------------------------------------
Confidence                     689999999999876543200                                                  


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc------CceeeeCCCCHHHHHHHHHHcCCCEE
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT------SPFSVQDSTSLPRVFKLFRALGLRHV  441 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~------~p~~V~~~~~l~~a~~~f~~~~lr~l  441 (482)
                                                         .....+++++|.+      ++.++++++++.++++.|.+.+.+++
T Consensus        73 -----------------------------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l  117 (144)
T 2nyc_A           73 -----------------------------------NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRF  117 (144)
T ss_dssp             -------------------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEE
T ss_pred             -----------------------------------ccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEE
Confidence                                               0011267888876      67899999999999999999999999


Q ss_pred             EEECCCCeEEEEEeHHHhHHHHH
Q psy15912        442 VVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       442 pVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ||+|++|+++|+||++|++++..
T Consensus       118 ~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A          118 FVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             EEECTTSBEEEEEEHHHHHHHHH
T ss_pred             EEECCCCCEEEEEEHHHHHHHHH
Confidence            99998899999999999998764

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.66  E-value=1.2e-15  Score=153.21  Aligned_cols=183  Identities=13%  Similarity=0.150  Sum_probs=137.1

Q ss_pred             ccccchhhcc--cCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVK--SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM--~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...+++|+|  .++++++.+++++.++++.|.+++++.+||+|++                                  
T Consensus        32 l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~----------------------------------   77 (330)
T 2v8q_E           32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK----------------------------------   77 (330)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT----------------------------------
T ss_pred             HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC----------------------------------
Confidence            4567999999  7799999999999999999999999999999975                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhh-hc-------------------------cC-CCCCCccchh---hhhhhcc
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKI-YK-------------------------EN-QNWPDDQLSS---EIFHAEY  337 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~-~~-------------------------~~-~~~p~~~~~~---~~~~~~~  337 (482)
                              .++++|+++.+|++..+.... ..                         .. ...+++.+..   .+.....
T Consensus        78 --------~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~  149 (330)
T 2v8q_E           78 --------KQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKI  149 (330)
T ss_dssp             --------TTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTC
T ss_pred             --------CCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCC
Confidence                    258999999999987664321 00                         00 0112222221   2345566


Q ss_pred             ccccccCC-CCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccc--cc
Q psy15912        338 RCRPRIWS-PGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLF--MN  414 (482)
Q Consensus       338 ~~~~~~~~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~i--m~  414 (482)
                      ++.|++++ ++.++|+++.+|+.+.+.......  .                    ..+        .....++++  |+
T Consensus       150 ~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~--~--------------------~~~--------~~~~~v~~~~v~~  199 (330)
T 2v8q_E          150 HRLPVIDPESGNTLYILTHKRILKFLKLFITEF--P--------------------KPE--------FMSKSLEELQIGT  199 (330)
T ss_dssp             SCEEEECTTTCCEEEEECHHHHHHHHHHHSCSS--S--------------------CCG--------GGGSBHHHHTCSB
T ss_pred             CeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhcc--C--------------------chh--------hhcCCHHHhcccC
Confidence            77888887 899999999999987664321100  0                    000        011134444  65


Q ss_pred             -cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        415 -TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       415 -~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                       ++++++++++++.++.+.|.+.+.+++||+|++|+++|+||++|++++..
T Consensus       200 ~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          200 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGG
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHh
Confidence             78899999999999999999999999999998999999999999998654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.65  E-value=1.7e-16  Score=155.24  Aligned_cols=169  Identities=18%  Similarity=0.282  Sum_probs=118.1

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      ++|+|+|+++++++.+++++.++++.|.+++++.+||+|++                                       
T Consensus         1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~---------------------------------------   41 (282)
T 2yzq_A            1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE---------------------------------------   41 (282)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTT---------------------------------------
T ss_pred             CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC---------------------------------------
Confidence            47999999999999999999999999999999999999864                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCC------CCCCccchh---hhhhhccccccccCCCCccccchhhHHHHH-HH
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQ------NWPDDQLSS---EIFHAEYRCRPRIWSPGRLVGLILRSQLII-LI  362 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~------~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~-~~  362 (482)
                          ++++|+++.+|++..+......+..      ..+++.+..   .+.....++.|++++++.++|+++.+|+.+ .+
T Consensus        42 ----~~~~Giv~~~dl~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~  117 (282)
T 2yzq_A           42 ----GKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF  117 (282)
T ss_dssp             ----CCEEEEEESSCC----------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTT
T ss_pred             ----CcEEEEEEHHHHHhhhccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                6899999999998665332111111      112222222   234556677888888899999999999985 44


Q ss_pred             HhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEE
Q psy15912        363 KHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVV  442 (482)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lp  442 (482)
                      ....                                    .....+++++|+++++++++++++.++.+.|.+.+.+++|
T Consensus       118 ~~~~------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~  161 (282)
T 2yzq_A          118 AKSE------------------------------------KYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALP  161 (282)
T ss_dssp             TTCS------------------------------------GGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEE
T ss_pred             hccC------------------------------------CcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEE
Confidence            3210                                    0012368899999999999999999999999999999999


Q ss_pred             EECCCCeEEEEEeHHHhH
Q psy15912        443 VVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       443 VVD~~g~lvGIITr~DLl  460 (482)
                      |+|++|+++|+||++|++
T Consensus       162 Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          162 VVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             EECTTSCEEEEEEGGGGG
T ss_pred             EEcCCCeEEEEEEHHHHh
Confidence            999889999999999999

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.65  E-value=7.6e-16  Score=150.06  Aligned_cols=168  Identities=16%  Similarity=0.296  Sum_probs=131.7

Q ss_pred             hhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCC
Q psy15912        216 RIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKES  295 (482)
Q Consensus       216 ~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (482)
                      .++|+++++++.+++++.+++++|.+++++.+||+|++                                          
T Consensus         7 ~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~------------------------------------------   44 (280)
T 3kh5_A            7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG------------------------------------------   44 (280)
T ss_dssp             GTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTT------------------------------------------
T ss_pred             HHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECC------------------------------------------
Confidence            45677899999999999999999999999999999973                                          


Q ss_pred             CCeEEEEEeHHHHHHHHHhhhh--------------------ccCCC------CCCccch---hhhhhhccccccccCCC
Q psy15912        296 PGRLVGLILRSQLIILIKHKIY--------------------KENQN------WPDDQLS---SEIFHAEYRCRPRIWSP  346 (482)
Q Consensus       296 ~g~lvGiIs~~dL~~~l~~~~~--------------------~~~~~------~p~~~~~---~~~~~~~~~~~~~~~~~  346 (482)
                      +++++|++|.+|+...+.....                    .+...      .+++.+.   ..+.....++.|+++++
T Consensus        45 ~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~  124 (280)
T 3kh5_A           45 NNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE  124 (280)
T ss_dssp             TCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT
T ss_pred             CCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC
Confidence            2699999999999987632100                    00000      1122111   12334556778899889


Q ss_pred             CccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCH
Q psy15912        347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSL  426 (482)
Q Consensus       347 ~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l  426 (482)
                      +.++|+++.+|+.+.+.....                                     ...+++++|+++++++++++++
T Consensus       125 ~~~~Givt~~dl~~~~~~~~~-------------------------------------~~~~v~~~m~~~~~~v~~~~~l  167 (280)
T 3kh5_A          125 NQLISLITERDVIRALLDKID-------------------------------------ENEVIDDYITRDVIVATPGERL  167 (280)
T ss_dssp             CBEEEEEEHHHHHHHHGGGSC-------------------------------------TTCBSGGGCBCSCCCBCTTCBH
T ss_pred             CEEEEEEEHHHHHHHHhhcCC-------------------------------------CCCCHHHHhCCCCeEECCCCcH
Confidence            999999999999876543211                                     1126889999999999999999


Q ss_pred             HHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        427 PRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       427 ~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .++.+.|.+.+.+++||+ ++|+++|+||++|++++.
T Consensus       168 ~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          168 KDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLL  203 (280)
T ss_dssp             HHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHH
Confidence            999999999999999999 689999999999999875

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.65  E-value=7.8e-16  Score=137.70  Aligned_cols=127  Identities=15%  Similarity=0.226  Sum_probs=107.9

Q ss_pred             ccchhhccc------CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCC
Q psy15912        212 NITARIVKS------HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  285 (482)
Q Consensus       212 ~l~a~dvM~------~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (482)
                      ..+|+|+|.      +++.++.+++++.++++.|.+++++.+||+| +                                
T Consensus         6 ~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~--------------------------------   52 (157)
T 4fry_A            6 STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G--------------------------------   52 (157)
T ss_dssp             -CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S--------------------------------
T ss_pred             HHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C--------------------------------
Confidence            357999998      6679999999999999999999999999965 3                                


Q ss_pred             CCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhh
Q psy15912        286 HKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHK  365 (482)
Q Consensus       286 ~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~  365 (482)
                                 ++++|+|+..|+.+.+.....                                                
T Consensus        53 -----------~~~~Givt~~dl~~~~~~~~~------------------------------------------------   73 (157)
T 4fry_A           53 -----------DDIAGIVTERDYARKVVLQER------------------------------------------------   73 (157)
T ss_dssp             -----------SSEEEEEEHHHHHHHSGGGTC------------------------------------------------
T ss_pred             -----------CEEEEEEEHHHHHHHHHhccC------------------------------------------------
Confidence                       589999999999876543210                                                


Q ss_pred             hhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC
Q psy15912        366 IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN  445 (482)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD  445 (482)
                                                           .....+++++|+++++++++++++.+++++|.+.+.+++||+|
T Consensus        74 -------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  116 (157)
T 4fry_A           74 -------------------------------------SSKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD  116 (157)
T ss_dssp             -------------------------------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             -------------------------------------CccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence                                                 0012378999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEeHHHhHHHHHhhcc
Q psy15912        446 NNNHVVGMITRKDLARYRVWRHG  468 (482)
Q Consensus       446 ~~g~lvGIITr~DLl~~~~~~~~  468 (482)
                       +|+++|+||++|++++......
T Consensus       117 -~g~~~Giit~~dil~~l~~~~~  138 (157)
T 4fry_A          117 -GGKLIGLISIGDLVKSVIADQQ  138 (157)
T ss_dssp             -TTEEEEEEEHHHHHHHHHTTCC
T ss_pred             -CCEEEEEEEHHHHHHHHHHHHH
Confidence             7999999999999998765543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.64  E-value=5.7e-16  Score=146.69  Aligned_cols=120  Identities=14%  Similarity=0.174  Sum_probs=106.1

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++++|.++++++.++.++.+++++|.+++++.+||+|++                                      
T Consensus        12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------------------------------------   53 (213)
T 1vr9_A           12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE--------------------------------------   53 (213)
T ss_dssp             -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT--------------------------------------
T ss_pred             ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC--------------------------------------
Confidence            457999999999999999999999999999999999999865                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                           ++++|+|+.+|+.....                                                          
T Consensus        54 -----~~l~Givt~~dl~~~~~----------------------------------------------------------   70 (213)
T 1vr9_A           54 -----GHFRGVVNKEDLLDLDL----------------------------------------------------------   70 (213)
T ss_dssp             -----SBEEEEEEGGGGTTSCT----------------------------------------------------------
T ss_pred             -----CEEEEEEEHHHHHhhcC----------------------------------------------------------
Confidence                 68999999988642110                                                          


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                                                        ..+++++|+++++++++++++.++.++|.+.+.+++||+|++|+++
T Consensus        71 ----------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lv  116 (213)
T 1vr9_A           71 ----------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLK  116 (213)
T ss_dssp             ----------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEE
T ss_pred             ----------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEE
Confidence                                              1168999999999999999999999999999999999999889999


Q ss_pred             EEEeHHHhHHHHHhh
Q psy15912        452 GMITRKDLARYRVWR  466 (482)
Q Consensus       452 GIITr~DLl~~~~~~  466 (482)
                      |+||++|+++.....
T Consensus       117 Giit~~Dil~~~~~~  131 (213)
T 1vr9_A          117 GAVSLHDFLEALIEA  131 (213)
T ss_dssp             EEEEHHHHHHHHHHS
T ss_pred             EEEEHHHHHHHHHHH
Confidence            999999999876543

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.63  E-value=1.9e-15  Score=151.71  Aligned_cols=179  Identities=13%  Similarity=0.283  Sum_probs=133.7

Q ss_pred             hhcccCCe--eEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        216 RIVKSHPV--ICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       216 ~dvM~~~~--~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      +++|.+++  +++.+++++.++++.|.+++++.+||+|++++                                      
T Consensus       110 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~--------------------------------------  151 (334)
T 2qrd_G          110 RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE--------------------------------------  151 (334)
T ss_dssp             HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETT--------------------------------------
T ss_pred             HhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCC--------------------------------------
Confidence            35677777  99999999999999999999999999987510                                      


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhh---------ccC---C------CCCCccchh---hhhhhccccccccCCCCccccc
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIY---------KEN---Q------NWPDDQLSS---EIFHAEYRCRPRIWSPGRLVGL  352 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~---------~~~---~------~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~G~  352 (482)
                      .+++.++|+++.+|+.+.+.....         .+-   .      ..+++.+..   .+.....++.|+++++|.++|+
T Consensus       152 ~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Gi  231 (334)
T 2qrd_G          152 TGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV  231 (334)
T ss_dssp             TTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEE
T ss_pred             cCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEE
Confidence            000239999999999987753210         010   0      012222221   2334556778888888999999


Q ss_pred             hhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc------CceeeeCCCCH
Q psy15912        353 ILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT------SPFSVQDSTSL  426 (482)
Q Consensus       353 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~------~p~~V~~~~~l  426 (482)
                      ++.+|+.+.+....+..                                   ...+++++|++      +++++++++++
T Consensus       232 it~~dl~~~~~~~~~~~-----------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l  276 (334)
T 2qrd_G          232 YESVDVMHLIQDGDYSN-----------------------------------LDLSVGEALLKRPANFDGVHTCRATDRL  276 (334)
T ss_dssp             EETHHHHHHHTTSCGGG-----------------------------------GGSBHHHHHTTCCTTCCCCCEECTTCBH
T ss_pred             EEHHHHHHHhhcccccc-----------------------------------ccCcHHHHHhcccccCCCCEEECCCCcH
Confidence            99999987664321110                                   12368889984      88999999999


Q ss_pred             HHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912        427 PRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       427 ~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~  467 (482)
                      .++.+.|.+.+.+++||||++|+++|+||++|++++.....
T Consensus       277 ~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          277 DGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             HHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence            99999999999999999998899999999999999865443

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.63  E-value=2.2e-15  Score=161.60  Aligned_cols=152  Identities=15%  Similarity=0.174  Sum_probs=125.9

Q ss_pred             cCCChhHHHHHHcCCCCCCCCCCCCccccchhhcccCCeeEecCC-CCHHHHHHHHHhCCCCeeeEec-CCCCCCCCCCC
Q psy15912        185 FTEGLYDIHIQLSGIPLLAWDPPPLSSNITARIVKSHPVICLRPL-ETVGNIIDVLKATSHNGFPIVD-VEPMTKHSSDG  262 (482)
Q Consensus       185 ~~~siy~~~L~~~g~p~l~~~~~~~l~~l~a~dvM~~~~~~l~~~-~~i~~~~~~l~~~~~~~fPVVd-~~~~~~~~~~~  262 (482)
                      +....++.++..+++..........+...+|+|+|+++++++.++ +++.++++.|++++++.+||+| ++         
T Consensus       356 ls~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~---------  426 (527)
T 3pc3_A          356 MTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD---------  426 (527)
T ss_dssp             TTTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT---------
T ss_pred             HhhhhcHHHHHhcCCccccccccccccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC---------
Confidence            334456788888887665544455688899999999999999999 9999999999999999999999 43         


Q ss_pred             ccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccc
Q psy15912        263 AEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPR  342 (482)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  342 (482)
                                                        ++++|+|+.+||++.+....                          
T Consensus       427 ----------------------------------g~lvGiVt~~Dll~~l~~~~--------------------------  446 (527)
T 3pc3_A          427 ----------------------------------GSVLGVVGQETLITQIVSMN--------------------------  446 (527)
T ss_dssp             ----------------------------------CCEEEEEEHHHHHHHHHHHC--------------------------
T ss_pred             ----------------------------------CEEEEEEEHHHHHHHHHhcc--------------------------
Confidence                                              68999999999987765431                          


Q ss_pred             cCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeC
Q psy15912        343 IWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQD  422 (482)
Q Consensus       343 ~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~  422 (482)
                                                                                  .....+|+++|+++++++++
T Consensus       447 ------------------------------------------------------------~~~~~~V~~im~~~~~~v~~  466 (527)
T 3pc3_A          447 ------------------------------------------------------------RQQSDPAIKALNKRVIRLNE  466 (527)
T ss_dssp             ------------------------------------------------------------CCTTSBGGGGEETTCCEEET
T ss_pred             ------------------------------------------------------------CcCCCcHHHHhcCCCeEECC
Confidence                                                                        00123799999999999999


Q ss_pred             CCCHHHHHHHHHHcCCCEEEEECCC----CeEEEEEeHHHhHHHHHhhc
Q psy15912        423 STSLPRVFKLFRALGLRHVVVVNNN----NHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       423 ~~~l~~a~~~f~~~~lr~lpVVD~~----g~lvGIITr~DLl~~~~~~~  467 (482)
                      ++++.++.++|.+.++  +||||++    |+++||||++||+++...+.
T Consensus       467 ~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          467 SEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             TSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            9999999999976654  7999974    89999999999999876543

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.62  E-value=1e-15  Score=151.60  Aligned_cols=121  Identities=22%  Similarity=0.233  Sum_probs=107.2

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhC-----CCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  285 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~-----~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (482)
                      ...+|+++|++++++++++.++.++++.|+++     +++.+||+|++                                
T Consensus       135 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~--------------------------------  182 (286)
T 2oux_A          135 EDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE--------------------------------  182 (286)
T ss_dssp             CTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT--------------------------------
T ss_pred             ChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC--------------------------------
Confidence            35789999999999999999999999999987     77889999975                                


Q ss_pred             CCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhh
Q psy15912        286 HKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHK  365 (482)
Q Consensus       286 ~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~  365 (482)
                                 ++++|+|+.+|++...                                                     
T Consensus       183 -----------~~lvGivt~~dll~~~-----------------------------------------------------  198 (286)
T 2oux_A          183 -----------NHLVGVISLRDLIVND-----------------------------------------------------  198 (286)
T ss_dssp             -----------CBEEEEEEHHHHTTSC-----------------------------------------------------
T ss_pred             -----------CeEEEEEEHHHHHcCC-----------------------------------------------------
Confidence                       6999999999974210                                                     


Q ss_pred             hhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC
Q psy15912        366 IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN  445 (482)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD  445 (482)
                                                             ...+++++|++++++|++++++.+|.++|.+.+++++||||
T Consensus       199 ---------------------------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd  239 (286)
T 2oux_A          199 ---------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD  239 (286)
T ss_dssp             ---------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ---------------------------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc
Confidence                                                   01278999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeHHHhHHHHHhh
Q psy15912        446 NNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       446 ~~g~lvGIITr~DLl~~~~~~  466 (482)
                      ++|+++||||+.|+++.....
T Consensus       240 ~~g~lvGiIT~~Dil~~i~~e  260 (286)
T 2oux_A          240 YDDHLLGIVTVDDIIDVIDDE  260 (286)
T ss_dssp             TTCBEEEEEEHHHHHHHHHHH
T ss_pred             CCCeEEEEEEHHHHHHHHHHH
Confidence            999999999999999875543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.62  E-value=3.5e-15  Score=149.11  Aligned_cols=180  Identities=15%  Similarity=0.181  Sum_probs=138.2

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...++.|+|.+  +++++..+.++.++++.|.++++..+||+|++                                  
T Consensus        27 l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~----------------------------------   72 (323)
T 3t4n_C           27 LNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK----------------------------------   72 (323)
T ss_dssp             HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETT----------------------------------
T ss_pred             HHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCC----------------------------------
Confidence            356789999986  67899999999999999999999999999976                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhh---------------------------cc-CCCCCCccchh---hhhhhc
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIY---------------------------KE-NQNWPDDQLSS---EIFHAE  336 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~---------------------------~~-~~~~p~~~~~~---~~~~~~  336 (482)
                              .++++|+++.+|++..+.....                           .+ ....+++.+..   .+....
T Consensus        73 --------~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~  144 (323)
T 3t4n_C           73 --------TSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESR  144 (323)
T ss_dssp             --------TTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHT
T ss_pred             --------CCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCC
Confidence                    2599999999999886632100                           00 01123333322   234556


Q ss_pred             cccccccCCCCc-----cccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccc
Q psy15912        337 YRCRPRIWSPGR-----LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNL  411 (482)
Q Consensus       337 ~~~~~~~~~~~~-----~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~  411 (482)
                      .++.|++++++.     ++|+++.+++.+.+....-..                                 .....++++
T Consensus       145 ~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~---------------------------------~~~~~~v~~  191 (323)
T 3t4n_C          145 SGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRET---------------------------------HFLKIPIGD  191 (323)
T ss_dssp             CSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGG---------------------------------GGCCSBGGG
T ss_pred             eeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCch---------------------------------hhhhCcHHH
Confidence            677888877765     999999999987764321110                                 001126778


Q ss_pred             c---cccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        412 F---MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       412 i---m~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +   |.++++++++++++.++.+.|.+.+.+++||+|++|+++|+||++|++++..
T Consensus       192 ~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          192 LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHH
T ss_pred             cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHh
Confidence            8   9999999999999999999999999999999999999999999999998754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.61  E-value=6.1e-15  Score=148.05  Aligned_cols=180  Identities=17%  Similarity=0.171  Sum_probs=134.9

Q ss_pred             ccccchhhcccC--CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKSH--PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~~--~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...+|+|+|++  +++++++++++.++++.|.+++++.+||+|++                                  
T Consensus        19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~----------------------------------   64 (334)
T 2qrd_G           19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE----------------------------------   64 (334)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT----------------------------------
T ss_pred             HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC----------------------------------
Confidence            445899999976  58899999999999999999999999999875                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhh----c-----------------------cC----CCCCCccchh---hhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIY----K-----------------------EN----QNWPDDQLSS---EIF  333 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~----~-----------------------~~----~~~p~~~~~~---~~~  333 (482)
                              .++++|+|+.+|++..+.....    .                       ..    ...++..+..   .+.
T Consensus        65 --------~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~  136 (334)
T 2qrd_G           65 --------ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMS  136 (334)
T ss_dssp             --------TTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHH
T ss_pred             --------CCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHH
Confidence                    2699999999999876632100    0                       00    0012222211   233


Q ss_pred             hhccccccccCCCCc-----cccchhhHHHHHHHHhhhhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccc
Q psy15912        334 HAEYRCRPRIWSPGR-----LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVK  408 (482)
Q Consensus       334 ~~~~~~~~~~~~~~~-----~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  408 (482)
                      ....++.|++++.+.     ++|+++.+|+.+.+........                                 ....+
T Consensus       137 ~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~---------------------------------~~~~~  183 (334)
T 2qrd_G          137 KSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETA---------------------------------MLRVP  183 (334)
T ss_dssp             HSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGG---------------------------------GCCCB
T ss_pred             HCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchh---------------------------------hhhCc
Confidence            455677788876544     9999999999877654211000                                 00125


Q ss_pred             ccc---ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        409 LNL---FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       409 v~~---im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++   +|.++++++++++++.++.+.|.+.+.+++||+|++|+++|+||++|++++..
T Consensus       184 v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          184 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             GGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHT
T ss_pred             HHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhh
Confidence            666   59999999999999999999999999999999998899999999999998653

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.61  E-value=3.1e-15  Score=147.38  Aligned_cols=119  Identities=21%  Similarity=0.263  Sum_probs=105.0

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhC-----CCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSH  286 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~-----~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (482)
                      ..+|+++|++++++++++.++.++++.|+++     ++..+||+|++                                 
T Consensus       134 ~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~---------------------------------  180 (278)
T 2yvy_A          134 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK---------------------------------  180 (278)
T ss_dssp             TTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT---------------------------------
T ss_pred             cchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC---------------------------------
Confidence            4689999999999999999999999999987     67999999975                                 


Q ss_pred             CCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhh
Q psy15912        287 KGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKI  366 (482)
Q Consensus       287 ~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~  366 (482)
                                ++++|+|+.+|++..   .                                                   
T Consensus       181 ----------~~lvGivt~~dll~~---~---------------------------------------------------  196 (278)
T 2yvy_A          181 ----------GRLKGVLSLRDLIVA---D---------------------------------------------------  196 (278)
T ss_dssp             ----------CBEEEEEEHHHHHHS---C---------------------------------------------------
T ss_pred             ----------CCEEEEEEHHHHhcC---C---------------------------------------------------
Confidence                      689999999998532   0                                                   


Q ss_pred             hccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC
Q psy15912        367 YKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN  446 (482)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~  446 (482)
                                                            ...+++++|++++++|++++++.++.++|++.+.+++||||+
T Consensus       197 --------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  238 (278)
T 2yvy_A          197 --------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE  238 (278)
T ss_dssp             --------------------------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             --------------------------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC
Confidence                                                  012789999999999999999999999999999999999999


Q ss_pred             CCeEEEEEeHHHhHHHHHh
Q psy15912        447 NNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       447 ~g~lvGIITr~DLl~~~~~  465 (482)
                      +|+++||||+.|+++....
T Consensus       239 ~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          239 EGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             TSBEEEEEEHHHHHHHC--
T ss_pred             CCeEEEEEEHHHHHHHHHH
Confidence            9999999999999987543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.54  E-value=1.9e-14  Score=152.15  Aligned_cols=121  Identities=21%  Similarity=0.260  Sum_probs=106.9

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhC-----CCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKAT-----SHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  285 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~-----~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (482)
                      ...+|+++|++++++++++.++.++++.++++     +++.+||+|++                                
T Consensus       153 ~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~--------------------------------  200 (473)
T 2zy9_A          153 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK--------------------------------  200 (473)
T ss_dssp             CTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT--------------------------------
T ss_pred             CCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC--------------------------------
Confidence            35689999999999999999999999999986     46899999975                                


Q ss_pred             CCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhh
Q psy15912        286 HKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHK  365 (482)
Q Consensus       286 ~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~  365 (482)
                                 ++++|+|+.+|++..   .                                                  
T Consensus       201 -----------~~lvGiVt~~Dll~~---~--------------------------------------------------  216 (473)
T 2zy9_A          201 -----------GRLKGVLSLRDLIVA---D--------------------------------------------------  216 (473)
T ss_dssp             -----------SBEEEEEEHHHHHHS---C--------------------------------------------------
T ss_pred             -----------CcEEEEEEHHHHhcC---C--------------------------------------------------
Confidence                       689999999998531   0                                                  


Q ss_pred             hhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC
Q psy15912        366 IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN  445 (482)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD  445 (482)
                                                             ...+++++|++++++++++++++++.+.|++.+++.+||||
T Consensus       217 ---------------------------------------~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD  257 (473)
T 2zy9_A          217 ---------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  257 (473)
T ss_dssp             ---------------------------------------TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ---------------------------------------CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc
Confidence                                                   01279999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEeHHHhHHHHHhh
Q psy15912        446 NNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       446 ~~g~lvGIITr~DLl~~~~~~  466 (482)
                      ++|+++|+||++|+++.....
T Consensus       258 e~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          258 EEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             TTSBEEEEEEHHHHHHHHHHH
T ss_pred             CCCEEEEEEehHhhHHHHHHH
Confidence            999999999999999886544

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.46  E-value=1.2e-13  Score=147.28  Aligned_cols=120  Identities=19%  Similarity=0.303  Sum_probs=104.7

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      +++++|.++++++.+++++.+++++|.+++++.+||+|++.                                       
T Consensus       114 ~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~---------------------------------------  154 (511)
T 3usb_A          114 RSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLD---------------------------------------  154 (511)
T ss_dssp             TSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTT---------------------------------------
T ss_pred             ccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCC---------------------------------------
Confidence            45677888999999999999999999999999999999720                                       


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                        +++++|+|+.+|+..   ..                                                          
T Consensus       155 --~~~lvGiVt~rDl~~---~~----------------------------------------------------------  171 (511)
T 3usb_A          155 --ERKLVGIITNRDMRF---IQ----------------------------------------------------------  171 (511)
T ss_dssp             --TCBEEEEEEHHHHTT---CC----------------------------------------------------------
T ss_pred             --CCEEEEEEEehHhhh---hc----------------------------------------------------------
Confidence              169999999999742   00                                                          


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc-CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT-SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~-~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                    ....+++++|++ +++++++++++.++.++|.+.+.+.+||||++|+++|
T Consensus       172 ------------------------------~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~G  221 (511)
T 3usb_A          172 ------------------------------DYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQG  221 (511)
T ss_dssp             ------------------------------CSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             ------------------------------cCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEee
Confidence                                          012378999998 9999999999999999999999999999999999999


Q ss_pred             EEeHHHhHHHHHh
Q psy15912        453 MITRKDLARYRVW  465 (482)
Q Consensus       453 IITr~DLl~~~~~  465 (482)
                      +||++|+++...+
T Consensus       222 iIT~~Dil~~~~~  234 (511)
T 3usb_A          222 LITIKDIEKVIEF  234 (511)
T ss_dssp             EEEHHHHHHHHHC
T ss_pred             eccHHHHHHhhhc
Confidence            9999999998765

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.41  E-value=3.2e-14  Score=151.08  Aligned_cols=120  Identities=20%  Similarity=0.337  Sum_probs=91.4

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      +++++|.++++++.+++++.++++.|++++++.+||+|++                                        
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~----------------------------------------  129 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTEN----------------------------------------  129 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS----------------------------------------
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccC----------------------------------------
Confidence            4578899999999999999999999999999999999975                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                         ++++|+|+.+||...   .                                                          
T Consensus       130 ---~~lvGiVt~rDL~~~---~----------------------------------------------------------  145 (496)
T 4fxs_A          130 ---NELVGIITGRDVRFV---T----------------------------------------------------------  145 (496)
T ss_dssp             ---SBEEEEEEHHHHTTC---C----------------------------------------------------------
T ss_pred             ---CEEEEEEEHHHHhhc---c----------------------------------------------------------
Confidence               699999999997410   0                                                          


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCccccccccccccccc-c-CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-T-SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~-~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                                                    ....+++++|+ + +++++++++++.++.++|.+.+++.+||||++|+++
T Consensus       146 ------------------------------~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~  195 (496)
T 4fxs_A          146 ------------------------------DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLK  195 (496)
T ss_dssp             ------------------------------CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCC
T ss_pred             ------------------------------cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEE
Confidence                                          01137899999 4 589999999999999999999999999999999999


Q ss_pred             EEEeHHHhHHHHHhhc
Q psy15912        452 GMITRKDLARYRVWRH  467 (482)
Q Consensus       452 GIITr~DLl~~~~~~~  467 (482)
                      |+||++|+++...+..
T Consensus       196 GiIT~~DIl~~~~~p~  211 (496)
T 4fxs_A          196 GMITAKDFHKAESKPN  211 (496)
T ss_dssp             EEECCC-----CCCTT
T ss_pred             EeehHhHHHHhhcccc
Confidence            9999999998765443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.40  E-value=1.1e-12  Score=139.37  Aligned_cols=118  Identities=18%  Similarity=0.318  Sum_probs=104.8

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEec--CCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVD--VEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      +++|+|.++++++++++++.++++.|++++++.+||+|  ++                                      
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~--------------------------------------  132 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN--------------------------------------  132 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT--------------------------------------
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC--------------------------------------
Confidence            46789999999999999999999999999999999998  43                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                           ++++|+|+.+|+....  .                                                        
T Consensus       133 -----~~lvGivt~~Dl~~~~--~--------------------------------------------------------  149 (491)
T 1zfj_A          133 -----RKLVGIITNRDMRFIS--D--------------------------------------------------------  149 (491)
T ss_dssp             -----CBEEEEEEHHHHHHCS--C--------------------------------------------------------
T ss_pred             -----CEEEEEEEHHHHhhhc--c--------------------------------------------------------
Confidence                 6999999999985320  0                                                        


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc-CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT-SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~-~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                       ...+++++|++ +++++++++++.++.++|.+.+.+++||||++|++
T Consensus       150 ---------------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~l  196 (491)
T 1zfj_A          150 ---------------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRL  196 (491)
T ss_dssp             ---------------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBE
T ss_pred             ---------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Confidence                                             01278999998 89999999999999999999999999999999999


Q ss_pred             EEEEeHHHhHHHHHh
Q psy15912        451 VGMITRKDLARYRVW  465 (482)
Q Consensus       451 vGIITr~DLl~~~~~  465 (482)
                      +|+||++|+++...+
T Consensus       197 vGivt~~Dil~~~~~  211 (491)
T 1zfj_A          197 SGLITIKDIEKVIEF  211 (491)
T ss_dssp             EEEEEHHHHHHHHHC
T ss_pred             EEEEEHHHHHHHHhc
Confidence            999999999998764

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.37  E-value=4.8e-14  Score=149.60  Aligned_cols=121  Identities=16%  Similarity=0.315  Sum_probs=5.1

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      .+++++|.++++++.+++++.+++++|++++++.+||+| +                                       
T Consensus        88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~---------------------------------------  127 (490)
T 4avf_A           88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q---------------------------------------  127 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C---------------------------------------
Confidence            356789999999999999999999999999999999999 4                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+|+.+|+.....                                                           
T Consensus       128 ----g~lvGIVt~rDl~~~~~-----------------------------------------------------------  144 (490)
T 4avf_A          128 ----GELVGIVTGRDLRVKPN-----------------------------------------------------------  144 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----CEEEEEEEhHHhhhccc-----------------------------------------------------------
Confidence                58999999999742100                                                           


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccc-c-CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMN-T-SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~-~-~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                      ...+++++|+ + +++++++++++.++.++|.+.+++.+||||++|++
T Consensus       145 --------------------------------~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~l  192 (490)
T 4avf_A          145 --------------------------------AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYL  192 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcE
Confidence                                            1127899999 4 69999999999999999999999999999999999


Q ss_pred             EEEEeHHHhHHHHHhhcc
Q psy15912        451 VGMITRKDLARYRVWRHG  468 (482)
Q Consensus       451 vGIITr~DLl~~~~~~~~  468 (482)
                      +|+||++|+++...+...
T Consensus       193 vGiIT~~Dil~~~~~p~a  210 (490)
T 4avf_A          193 RGLVTFRDIEKAKTYPLA  210 (490)
T ss_dssp             --------------CTTC
T ss_pred             EEEEehHHhhhhccCcch
Confidence            999999999998665443

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.35  E-value=8e-14  Score=148.28  Aligned_cols=120  Identities=24%  Similarity=0.330  Sum_probs=7.4

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      .+++|+|.++++++++++++.++++.|++++++.+||+|++                                       
T Consensus        95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~---------------------------------------  135 (494)
T 1vrd_A           95 KKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE---------------------------------------  135 (494)
T ss_dssp             HTC-----------------------------------------------------------------------------
T ss_pred             hhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC---------------------------------------
Confidence            35789999999999999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+|+.+|+....  .                                                         
T Consensus       136 ----~~lvGivt~~Dl~~~~--~---------------------------------------------------------  152 (494)
T 1vrd_A          136 ----GRLVGLLTNRDVRFEK--N---------------------------------------------------------  152 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----CEEEEEEEHHHHHhhc--C---------------------------------------------------------
Confidence                6899999999986410  0                                                         


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCcccccccccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                      ...+++++|++  +++++++++++.++.++|.+.+++++||||++|++
T Consensus       153 --------------------------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l  200 (494)
T 1vrd_A          153 --------------------------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKL  200 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence                                            01278999998  99999999999999999999999999999999999


Q ss_pred             EEEEeHHHhHHHHHhh
Q psy15912        451 VGMITRKDLARYRVWR  466 (482)
Q Consensus       451 vGIITr~DLl~~~~~~  466 (482)
                      +|+||++|+++...+.
T Consensus       201 vGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          201 VGLITIKDIMSVIEHP  216 (494)
T ss_dssp             --------CHHHHTCT
T ss_pred             EEEEEHHHHHhhhccc
Confidence            9999999999986544

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.33  E-value=1.3e-13  Score=144.10  Aligned_cols=120  Identities=19%  Similarity=0.350  Sum_probs=2.4

Q ss_pred             hcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q psy15912        217 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESP  296 (482)
Q Consensus       217 dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (482)
                      ..|..+++++.|+.++.++++++.+++|.++||+|+..                                        .+
T Consensus       142 ~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~----------------------------------------~~  181 (556)
T 4af0_A          142 NGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGE----------------------------------------PD  181 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccC----------------------------------------cC
Confidence            45777899999999999999999999999999999752                                        13


Q ss_pred             CeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCC
Q psy15912        297 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDD  376 (482)
Q Consensus       297 g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~  376 (482)
                      ++|+|+||.+|+...  .                                                              
T Consensus       182 ~kLvGIvT~RD~rf~--d--------------------------------------------------------------  197 (556)
T 4af0_A          182 SKLLGIVTGRDVQFQ--D--------------------------------------------------------------  197 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEEeccccccc--c--------------------------------------------------------------
Confidence            799999999996321  0                                                              


Q ss_pred             CCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Q psy15912        377 QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR  456 (482)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr  456 (482)
                                                  ...+|+++|++++++++++.++++|.++|.++++..+||||++|+++|+||+
T Consensus       198 ----------------------------~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~  249 (556)
T 4af0_A          198 ----------------------------AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVAR  249 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEe
Confidence                                        0127999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhhcc
Q psy15912        457 KDLARYRVWRHG  468 (482)
Q Consensus       457 ~DLl~~~~~~~~  468 (482)
                      +|+.+...+...
T Consensus       250 kDi~k~~~~p~A  261 (556)
T 4af0_A          250 SDLLKNQNYPYA  261 (556)
T ss_dssp             --------CTTC
T ss_pred             chhhhhhhCCcc
Confidence            999988765543

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.31  E-value=2e-13  Score=145.37  Aligned_cols=126  Identities=18%  Similarity=0.259  Sum_probs=4.6

Q ss_pred             ccchhhc-ccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        212 NITARIV-KSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       212 ~l~a~dv-M~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      .++..++ |.++++++++++++.++++.|.+++++.+||+|++..                                   
T Consensus        95 ~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~-----------------------------------  139 (503)
T 1me8_A           95 AVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP-----------------------------------  139 (503)
T ss_dssp             HHHTTTC-------------------------------------------------------------------------
T ss_pred             hhhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCc-----------------------------------
Confidence            4455566 9999999999999999999999999999999986400                                   


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                           .++++|+|+.+|+...  ..                                                       
T Consensus       140 -----~g~lvGiVt~~Dl~~~--~~-------------------------------------------------------  157 (503)
T 1me8_A          140 -----HGVLLGLVTQRDYPID--LT-------------------------------------------------------  157 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----CCeEEEEEEHHHHHhh--hc-------------------------------------------------------
Confidence                 1589999999998642  00                                                       


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                                       ....+++++|+++  ++++++++++.++.++|++.+++.+||||++|
T Consensus       158 ---------------------------------~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g  204 (503)
T 1me8_A          158 ---------------------------------QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ  204 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC
Confidence                                             0112789999988  99999999999999999999999999999999


Q ss_pred             eEEEEEeHHHhHHHHHhhc
Q psy15912        449 HVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~~~~  467 (482)
                      +++|+||++|+++......
T Consensus       205 ~lvGiIT~~Dil~~~~~~~  223 (503)
T 1me8_A          205 HLRYIVFRKDYDRSQVCHN  223 (503)
T ss_dssp             -----------------CC
T ss_pred             eEEEEEEecHHHHhhhccc
Confidence            9999999999998866443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.26  E-value=1.3e-13  Score=147.41  Aligned_cols=172  Identities=19%  Similarity=0.275  Sum_probs=95.8

Q ss_pred             HHHHHHHHhhCCchhhHHHHHHHH-------HHHHHhhhcCCChhHHHHHHcCCCCCCCC--CCCC----ccccchhhcc
Q psy15912        153 SLTIILIEATGNISFGLPLMLTLI-------TAKWIGDFFTEGLYDIHIQLSGIPLLAWD--PPPL----SSNITARIVK  219 (482)
Q Consensus       153 s~~vi~~Eltg~~~~~~Pl~ia~~-------ia~~v~~~~~~siy~~~L~~~g~p~l~~~--~~~~----l~~l~a~dvM  219 (482)
                      +.+.+..|+|+++.+.+|++.+.+       ++..++..            .+..++...  ....    ..-.+++|+|
T Consensus        47 ~~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~------------gg~gii~~~~t~e~~~~~v~~v~~~~~im  114 (514)
T 1jcn_A           47 DEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALM------------GGIGFIHHNCTPEFQANEVRKVKNFEQGF  114 (514)
T ss_dssp             GGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHT------------TCEEEECCSSCHHHHHHHHHHHHTCCTTS
T ss_pred             ceeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhc------------CCeeEEecCCCHHHHHHHHHhhhhhhhcc
Confidence            456677899999999999887632       23333322            111111100  0000    0123678999


Q ss_pred             cCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeE
Q psy15912        220 SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRL  299 (482)
Q Consensus       220 ~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  299 (482)
                      .++++++.+++++.+++++|.+++++.+||+|++.                                        .++++
T Consensus       115 ~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~----------------------------------------~~~~l  154 (514)
T 1jcn_A          115 ITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGT----------------------------------------MGSKL  154 (514)
T ss_dssp             CSSCCCCCC-----------------CEESCC------------------------------------------------
T ss_pred             ccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCC----------------------------------------cCCEE
Confidence            99999999999999999999999999999999730                                        01589


Q ss_pred             EEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCCC
Q psy15912        300 VGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLS  379 (482)
Q Consensus       300 vGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~  379 (482)
                      +|+|+.+|+......                                                                 
T Consensus       155 vGiVt~~Dl~~~~~~-----------------------------------------------------------------  169 (514)
T 1jcn_A          155 VGIVTSRDIDFLAEK-----------------------------------------------------------------  169 (514)
T ss_dssp             CCEECTTTTC----------------------------------------------------------------------
T ss_pred             EEEEEHHHHHhhhhc-----------------------------------------------------------------
Confidence            999999987432100                                                                 


Q ss_pred             hhhhhhhCCCCCCCCccccCcccccccccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHH
Q psy15912        380 SEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRK  457 (482)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~  457 (482)
                                              ....+++++|++  +++++++++++.++.++|.+.+.+++||||++|+++|+||++
T Consensus       170 ------------------------~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~  225 (514)
T 1jcn_A          170 ------------------------DHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIART  225 (514)
T ss_dssp             -----------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CC
T ss_pred             ------------------------cCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHH
Confidence                                    011278899998  999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHh
Q psy15912        458 DLARYRVW  465 (482)
Q Consensus       458 DLl~~~~~  465 (482)
                      |+++...+
T Consensus       226 Dll~~~~~  233 (514)
T 1jcn_A          226 DLKKNRDY  233 (514)
T ss_dssp             CCSSCCCC
T ss_pred             HHHHHhhC
Confidence            99986543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.15  E-value=3.1e-12  Score=135.75  Aligned_cols=114  Identities=23%  Similarity=0.382  Sum_probs=1.9

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      .++|+|..+++++.+++++.++++.|++++++.+||+|++                                        
T Consensus        94 ~~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~----------------------------------------  133 (486)
T 2cu0_A           94 RAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDE----------------------------------------  133 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECC----------------------------------------
Confidence            3467899999999999999999999999999999999863                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                          +++|+|+.+|+..   ..                                                          
T Consensus       134 ----~lvGivt~~Dl~~---~~----------------------------------------------------------  148 (486)
T 2cu0_A          134 ----KVVGIITKKDIAA---RE----------------------------------------------------------  148 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----EEEEEEEHHHhcc---CC----------------------------------------------------------
Confidence                8999999999753   10                                                          


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM  453 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGI  453 (482)
                                                      ..+++++|+++++++++++++.+++++|.+.+.+.+||||++|+++|+
T Consensus       149 --------------------------------~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGi  196 (486)
T 2cu0_A          149 --------------------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGL  196 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEE
Confidence                                            126888999999999999999999999999999999999999999999


Q ss_pred             EeHHHhHHHHH
Q psy15912        454 ITRKDLARYRV  464 (482)
Q Consensus       454 ITr~DLl~~~~  464 (482)
                      ||++|+++...
T Consensus       197 iT~~Dil~~~~  207 (486)
T 2cu0_A          197 ITMSDLVARKK  207 (486)
T ss_dssp             ----------C
T ss_pred             EEHHHHHHhhh
Confidence            99999998754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.80  E-value=6.2e-09  Score=94.06  Aligned_cols=56  Identities=27%  Similarity=0.393  Sum_probs=54.0

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++|+++|+++++++++++++.+|.++|.+.+++++||+|++|+++|+||.+|+++.
T Consensus        18 ~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~   73 (170)
T 4esy_A           18 VPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRG   73 (170)
T ss_dssp             SBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGG
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999865

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.62  E-value=4.6e-08  Score=83.77  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++.++++|.+++.++++++++.+|.+.|++.+.+++||+|+ |+++|+||++|+++...
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~   61 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRK   61 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCS
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence            45899999999999999999999999999999999999998 99999999999997643

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.61  E-value=1.1e-07  Score=83.60  Aligned_cols=60  Identities=17%  Similarity=0.339  Sum_probs=55.2

Q ss_pred             cccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHHh
Q psy15912        406 TVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRVW  465 (482)
Q Consensus       406 ~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~~  465 (482)
                      ..+++++|++  ++.++++++++.+|.+.|++.+.+++||+|++ |+++|+||++|+++....
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~   84 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKIN   84 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHH
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc
Confidence            3589999998  99999999999999999999999999999987 899999999999987543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.61  E-value=9.4e-08  Score=83.12  Aligned_cols=71  Identities=13%  Similarity=0.204  Sum_probs=58.9

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC--eEEEEEeHHHhHHHHHhhcccccccccc
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN--HVVGMITRKDLARYRVWRHGGRMGLEEL  476 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g--~lvGIITr~DLl~~~~~~~~~~~~~~~~  476 (482)
                      .+.++++|++++.++++++++.+|.+.|.+.+.+++||+|++|  +++|+||++|++++..........++++
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~   76 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPI   76 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGG
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHH
Confidence            3579999999999999999999999999999999999999888  9999999999998754332223344443

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.60  E-value=8.7e-08  Score=74.11  Aligned_cols=47  Identities=23%  Similarity=0.387  Sum_probs=43.2

Q ss_pred             ceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        417 PFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       417 p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++++++++++.+|.++|.+.+++++||+| +|+++||||.+|+++...
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            57899999999999999999999999997 689999999999987543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.56  E-value=9.3e-08  Score=84.13  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=54.6

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ..++++|++  +++++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|+++...
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~   87 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFD   87 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHh
Confidence            479999999  9999999999999999999999999999998999999999999998654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.55  E-value=1.2e-07  Score=81.91  Aligned_cols=58  Identities=16%  Similarity=0.336  Sum_probs=53.9

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHh-HHHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDL-ARYRV  464 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DL-l~~~~  464 (482)
                      ..++++|++++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+ +++..
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   66 (138)
T 2p9m_A            8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR   66 (138)
T ss_dssp             CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred             CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            47999999999999999999999999999999999999988999999999999 77543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.55  E-value=2.1e-07  Score=79.90  Aligned_cols=69  Identities=25%  Similarity=0.325  Sum_probs=58.1

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhcccccccccc
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEEL  476 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~~~~~~~~~~  476 (482)
                      ..++++|.++++++++++++.+|.+.|.+.+.+++||+| +|+++|+||++|+++...........++++
T Consensus         4 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~   72 (133)
T 2ef7_A            4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEF   72 (133)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGT
T ss_pred             ccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHH
Confidence            479999999999999999999999999999999999999 899999999999988755433223344443

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.54  E-value=1.4e-07  Score=81.43  Aligned_cols=55  Identities=27%  Similarity=0.540  Sum_probs=52.5

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ..++++|+++++++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~   61 (138)
T 2yzi_A            7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR   61 (138)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Confidence            4799999999999999999999999999999999999998899999999999984

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.54  E-value=9.9e-08  Score=82.78  Aligned_cols=58  Identities=14%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             cccccccc--cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMN--TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~--~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~  464 (482)
                      ..++++|+  +++.++++++++.+|.++|++.+++++||+|++ |+++|+||.+|++++..
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~   63 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL   63 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence            37899998  567999999999999999999999999999987 89999999999998754

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.53  E-value=1.9e-07  Score=90.25  Aligned_cols=61  Identities=15%  Similarity=0.306  Sum_probs=55.1

Q ss_pred             cccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC--CeEEEEEeHHHhHHHHHh
Q psy15912        405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN--NHVVGMITRKDLARYRVW  465 (482)
Q Consensus       405 ~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~--g~lvGIITr~DLl~~~~~  465 (482)
                      ..+.++++|++++++|.+++++.+|.++|.+.+++++||||++  ++++|+||++||+++...
T Consensus        11 ~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~   73 (250)
T 2d4z_A           11 YNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR   73 (250)
T ss_dssp             SSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHH
Confidence            3458999999999999999999999999999999999999864  689999999999987543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.51  E-value=1.7e-07  Score=89.74  Aligned_cols=58  Identities=19%  Similarity=0.362  Sum_probs=55.1

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .+++++|+++++++++++++.+|.++|.+.+++++||+|++|+++||||.+|++++..
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~   64 (245)
T 3l2b_A            7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYM   64 (245)
T ss_dssp             CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            4799999999999999999999999999999999999998899999999999998764

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.51  E-value=1.5e-07  Score=79.46  Aligned_cols=57  Identities=19%  Similarity=0.380  Sum_probs=53.7

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++++|++++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|++++..
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~   58 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA   58 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHH
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHH
Confidence            578999999999999999999999999999999999998999999999999998754

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.51  E-value=1.7e-07  Score=79.30  Aligned_cols=56  Identities=21%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +++++|++++.++++++++.+|.+.|.+.+.+++||+| +|+++|+||++|+++...
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~   57 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIA   57 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHh
Confidence            57899999999999999999999999999999999999 899999999999997654

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.50  E-value=2.8e-07  Score=71.19  Aligned_cols=46  Identities=13%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCeEEEE
Q psy15912        223 VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGRLVGL  302 (482)
Q Consensus       223 ~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvGi  302 (482)
                      ++++.|++++.++.++|.+++++++||+|+                                            ++++|+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--------------------------------------------~~lvGI   37 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--------------------------------------------DEILGV   37 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--------------------------------------------TEEEEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------------------------------------CEEEEE
Confidence            679999999999999999999999999985                                            489999


Q ss_pred             EeHHHHHHHH
Q psy15912        303 ILRSQLIILI  312 (482)
Q Consensus       303 Is~~dL~~~l  312 (482)
                      +|.+|+.+.+
T Consensus        38 vT~~Di~~~~   47 (70)
T 3ghd_A           38 VTERDILDKV   47 (70)
T ss_dssp             EEHHHHHHHT
T ss_pred             EEHHHHHHHH
Confidence            9999997654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.50  E-value=1.7e-07  Score=83.64  Aligned_cols=58  Identities=26%  Similarity=0.517  Sum_probs=54.7

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +.++++|+++++++++++++.+|.++|.+.+.+++||+|++|+++|+||++||+++..
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   62 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE   62 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence            4799999999999999999999999999999999999998899999999999998754

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.50  E-value=1.8e-07  Score=80.26  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=52.6

Q ss_pred             cccccccc--cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMN--TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~--~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~  463 (482)
                      ..++++|+  ++++++++++++.+|.+.|++.+.+++||+|++ |+++|+||.+|++++.
T Consensus         5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~   64 (129)
T 3jtf_A            5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYM   64 (129)
T ss_dssp             CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGG
T ss_pred             CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHh
Confidence            47999999  667899999999999999999999999999985 8999999999999864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.50  E-value=1.6e-07  Score=102.61  Aligned_cols=125  Identities=11%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             ccccccCCCchhhhhhhcccc-------ccc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHH--HHHHhcCCC
Q psy15912         60 YGVSVSGGGMPEKYDFLSKDN-------VWK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSL--FLQSIFPEA  127 (482)
Q Consensus        60 ~~~~~~g~G~~~~~~~l~~~~-------~~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~--~~~~~~~~~  127 (482)
                      +.-...|.|-+.+..+++|..       .|. ++.|.  +.+|+|+|+|.|...|+..+||++|..++.  .+.....+.
T Consensus        73 ~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~~  152 (632)
T 3org_A           73 LSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDR  152 (632)
T ss_dssp             SCGGGCBCSHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHHSH
T ss_pred             cCCccCCCCHHHHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccccCCH
Confidence            344566888889999998864       122 23555  999999999999999999999999998777  544322111


Q ss_pred             CCCchhHHHHHHHHHHhhhhhchhHHHHHHHHHhhCC---chhhHHHHHHHHHHHHHhhhcC
Q psy15912        128 TWIDPGKYALIGAAAQLGGVVRMTISLTIILIEATGN---ISFGLPLMLTLITAKWIGDFFT  186 (482)
Q Consensus       128 ~~~~~~~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~---~~~~~Pl~ia~~ia~~v~~~~~  186 (482)
                        .+...+..+|+||-++++.++|++++++.+|....   ...+.|.+++++++..+.+.+.
T Consensus       153 --~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~  212 (632)
T 3org_A          153 --ALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLY  212 (632)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC--
T ss_pred             --HHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence              13456889999999999999999999999999874   2456899999999888887653

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.49  E-value=1.4e-07  Score=84.26  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             cccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        408 KLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       408 ~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      .++++|.+  +..++++++++.+|.++|.+.+++++||+|++|+++|+||.+|++++....
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~   76 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEH   76 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHH
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhc
Confidence            67889985  678999999999999999999999999999999999999999999876543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.45  E-value=1.9e-07  Score=79.83  Aligned_cols=57  Identities=14%  Similarity=0.310  Sum_probs=52.6

Q ss_pred             cccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~  463 (482)
                      ..++++|++.  ++++++++++.+|.+.|++.+.+++||+|++ |+++|+||.+|+++..
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~   62 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM   62 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH
Confidence            3789999965  8999999999999999999999999999987 8999999999999764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.44  E-value=3.1e-07  Score=82.28  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             ccccccccccc---CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        405 FTVKLNLFMNT---SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       405 ~~i~v~~im~~---~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      ..+.++++|++   +++++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|+++.....
T Consensus        22 ~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~   86 (165)
T 3fhm_A           22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ   86 (165)
T ss_dssp             SSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             hhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhc
Confidence            34689999996   689999999999999999999999999999899999999999999875443

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.41  E-value=3.1e-07  Score=86.27  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++|+|.+++.++.+++++.++.+.|.+++++.+||+|++                                      
T Consensus        71 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------------------------------------  112 (213)
T 1vr9_A           71 DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE--------------------------------------  112 (213)
T ss_dssp             TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTT--------------------------------------
T ss_pred             CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC--------------------------------------
Confidence            346899999999999999999999999999999999999975                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHh
Q psy15912        292 RKESPGRLVGLILRSQLIILIKH  314 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~  314 (482)
                           |+++|+|+.+|++..+..
T Consensus       113 -----g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A          113 -----MRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             -----CBEEEEEEHHHHHHHHHH
T ss_pred             -----CEEEEEEEHHHHHHHHHH
Confidence                 699999999999887654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.41  E-value=5.2e-07  Score=81.58  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             cccccccc--cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHHhhcccccccccc
Q psy15912        407 VKLNLFMN--TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRVWRHGGRMGLEEL  476 (482)
Q Consensus       407 i~v~~im~--~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~~~~~~~~~~~~~  476 (482)
                      ..++++|+  ++++++++++++.+|.+.|++.+++++||+|++ ++++|+||.+|++++....  ....++++
T Consensus        42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~--~~~~v~~i  112 (172)
T 3lhh_A           42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG--ERLELVDL  112 (172)
T ss_dssp             -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT--CCCCGGGG
T ss_pred             CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc--CcccHHHH
Confidence            47999999  678999999999999999999999999999987 9999999999999876432  23445444

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.40  E-value=5.1e-07  Score=80.34  Aligned_cols=56  Identities=21%  Similarity=0.370  Sum_probs=52.5

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      +.++++|++ |+++++++++.+|.+.|.+.+.+++||+|++|+++|+||.+|+++..
T Consensus        17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   72 (159)
T 3fv6_A           17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRAS   72 (159)
T ss_dssp             CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHh
Confidence            489999987 67999999999999999999999999999899999999999999864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.40  E-value=3.1e-07  Score=80.58  Aligned_cols=58  Identities=14%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             cccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        406 TVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       406 ~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .+.++++|++  ++.++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|+++..
T Consensus        14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~   73 (150)
T 3lqn_A           14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGI   73 (150)
T ss_dssp             HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHT
T ss_pred             cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            3589999994  589999999999999999999999999999999999999999999765

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.39  E-value=3.2e-07  Score=81.51  Aligned_cols=57  Identities=19%  Similarity=0.311  Sum_probs=52.7

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHhHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN-HVVGMITRKDLARYR  463 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g-~lvGIITr~DLl~~~  463 (482)
                      ..++++|++  +++++++++++.+|.+.|++.+.+++||+|+++ +++|+||.+|++++.
T Consensus        38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~   97 (156)
T 3oi8_A           38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYM   97 (156)
T ss_dssp             CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGS
T ss_pred             CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHH
Confidence            479999987  789999999999999999999999999999874 999999999999864

>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...

Probab=98.39  E-value=4.6e-07  Score=95.32  Aligned_cols=122  Identities=18%  Similarity=0.188  Sum_probs=97.3

Q ss_pred             ccccccCCCchhhhhhhcccc--cc-c-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912         60 YGVSVSGGGMPEKYDFLSKDN--VW-K-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  133 (482)
Q Consensus        60 ~~~~~~g~G~~~~~~~l~~~~--~~-~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~  133 (482)
                      ++-...|.|.+.+..+++|+-  .| . ...|.  +.+|+++|+|.|...|+..+||++|..+++.+..   .. ..+..
T Consensus       100 ~~p~a~GsGip~v~~~l~~~~~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l---~~-~~~~r  175 (465)
T 1ots_A          100 YAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL---KG-DEARH  175 (465)
T ss_dssp             HCGGGSSCSHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC---CS-HHHHH
T ss_pred             hCccccCCChHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhcc---CC-HHHHH
Confidence            344556788999999998853  22 2 24555  9999999999999999999999999999986531   01 12456


Q ss_pred             HHHHHHHHHHhhhhhchhHHHHHHHHHhhC-Cch--h--hHHHHHHHHHHHHHhhhc
Q psy15912        134 KYALIGAAAQLGGVVRMTISLTIILIEATG-NIS--F--GLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg-~~~--~--~~Pl~ia~~ia~~v~~~~  185 (482)
                      .+..+|+||-++++.++|++.+++.+|... .+.  .  +.|.++++++++.+++.+
T Consensus       176 ~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~  232 (465)
T 1ots_A          176 TLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF  232 (465)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999998775 333  4  889999999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.39  E-value=2.4e-07  Score=79.45  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      ..++++|.++++++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~   62 (133)
T 1y5h_A            8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI   62 (133)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHH
T ss_pred             cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHH
Confidence            4789999999999999999999999999999999999998899999999999984

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.38  E-value=3.9e-07  Score=80.92  Aligned_cols=58  Identities=16%  Similarity=0.217  Sum_probs=54.2

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .+++++|.+  +++++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|++++..
T Consensus        14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~   73 (159)
T 1yav_A           14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   73 (159)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhh
Confidence            479999998  8999999999999999999999999999998899999999999998653

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.38  E-value=4.6e-07  Score=79.14  Aligned_cols=56  Identities=18%  Similarity=0.322  Sum_probs=52.8

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++++++|.+  +++++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|+++.
T Consensus         5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~   62 (152)
T 4gqw_A            5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL   62 (152)
T ss_dssp             SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred             EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence            589999998  89999999999999999999999999999988999999999999864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.37  E-value=5e-07  Score=79.75  Aligned_cols=58  Identities=14%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             cccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        406 TVKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       406 ~i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ...++++|.+  +++++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|++++.
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~   69 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAI   69 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHS
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHH
Confidence            3489999997  889999999999999999999999999999889999999999999764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.36  E-value=4.7e-07  Score=80.04  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=53.9

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEE-CC-CCeEEEEEeHHHhHHHHHhh
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVV-NN-NNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVV-D~-~g~lvGIITr~DLl~~~~~~  466 (482)
                      .+++++|++  +++++++++++.+|.+.|++.+.+++||+ |+ +|+++|+||++|++++....
T Consensus        20 ~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~   83 (153)
T 3oco_A           20 KVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID   83 (153)
T ss_dssp             CBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH
T ss_pred             CEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC
Confidence            479999997  89999999999999999999999999999 65 48999999999999875433

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.36  E-value=7.2e-07  Score=81.39  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=54.4

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +.++++|++.++++++++++.+|.++|.+.+.+++||+|++|+++|+||.+|++++..
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~   66 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   66 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence            5899999999999999999999999999999999999998899999999999998643

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.36  E-value=2.8e-07  Score=79.06  Aligned_cols=58  Identities=14%  Similarity=0.342  Sum_probs=52.0

Q ss_pred             cccccccccC--ceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNTS--PFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~~--p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~  464 (482)
                      .+++++|++.  .+++++++++.+|.+.|++.+.+++||+|++ |+++|+||.+|++++..
T Consensus         6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~   66 (130)
T 3i8n_A            6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ   66 (130)
T ss_dssp             -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH
T ss_pred             CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh
Confidence            4799999954  4589999999999999999999999999987 89999999999998754

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.36  E-value=4e-07  Score=78.34  Aligned_cols=58  Identities=10%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g~lvGIITr~DLl~~~~  464 (482)
                      +.++++|++  +++++++++++.+|.+.|++.+++++||+|+ +|+++|+||.+|++++..
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~   62 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT   62 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            368999964  6889999999999999999999999999975 589999999999998754

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.35  E-value=5.8e-07  Score=79.76  Aligned_cols=59  Identities=24%  Similarity=0.373  Sum_probs=54.5

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC--CCeEEEEEeHHHhHHHHH
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN--NNHVVGMITRKDLARYRV  464 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~--~g~lvGIITr~DLl~~~~  464 (482)
                      ...++++|+++++++++++++.+|.++|.+.+.+++||+|+  +|+++|+||++|+++...
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~   72 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ   72 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHH
Confidence            35799999999999999999999999999999999999986  789999999999998653

>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A

Probab=98.32  E-value=1.1e-06  Score=92.34  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=96.3

Q ss_pred             ccccccCCCchhhhhhhccccccc----cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912         60 YGVSVSGGGMPEKYDFLSKDNVWK----SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  133 (482)
Q Consensus        60 ~~~~~~g~G~~~~~~~l~~~~~~~----~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~  133 (482)
                      +.-...|.|-+.+..+++|.....    +..|.  +.+|+++|+|.|...|+..+||++|..+++.+..    . ..+..
T Consensus        96 ~~p~a~GsGIp~v~~~l~g~~~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~~----~-~~~~r  170 (466)
T 3nd0_A           96 FAPDTSGSGIPQIEGHLEGKLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKA----T-QENQR  170 (466)
T ss_dssp             TCGGGSBCSHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTTC----C-HHHHH
T ss_pred             HCCCcCCCCHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcCC----C-hhHHH
Confidence            344456788889999998763221    23554  9999999999999999999999999999986531    1 12456


Q ss_pred             HHHHHHHHHHhhhhhchhHHHHHHHHHhhC-Cc----hhhHHHHHHHHHHHHHhhhc
Q psy15912        134 KYALIGAAAQLGGVVRMTISLTIILIEATG-NI----SFGLPLMLTLITAKWIGDFF  185 (482)
Q Consensus       134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg-~~----~~~~Pl~ia~~ia~~v~~~~  185 (482)
                      .+..+|+||-++++.++|++.+++.+|... .+    ..+.|.++++++++.+++.+
T Consensus       171 ~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~  227 (466)
T 3nd0_A          171 ILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMI  227 (466)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999654 43    23669999999999999865

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.29  E-value=5.7e-07  Score=81.09  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=52.8

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +.++++|.+  +++++++++++.+|.++|.+.+.+++||+|++|+++|+||++|+++.
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~   61 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLAL   61 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhh
Confidence            478999998  89999999999999999999999999999999999999999999853

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.28  E-value=1.1e-06  Score=75.62  Aligned_cols=54  Identities=15%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             ccccccc---cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMN---TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~---~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++++|+   ++++++++++++.+|.+.|.+.+.+++||+| +|+++|+||++|+++.
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~   63 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRK   63 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHH
Confidence            7899999   8999999999999999999999999999998 8999999999999864

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.28  E-value=1.6e-06  Score=74.97  Aligned_cols=57  Identities=12%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             cccc---ccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNL---FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~---im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ++++   +|.++++++++++++.+|.+.|.+.+.+++||+|++|+++|+||++|++++..
T Consensus         9 ~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~   68 (144)
T 2nyc_A            9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK   68 (144)
T ss_dssp             BGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             chhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhc
Confidence            4555   89899999999999999999999999999999998899999999999998654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.27  E-value=1.1e-06  Score=79.66  Aligned_cols=60  Identities=22%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             ccccccccccC----ceee--eCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHhHHHHHh
Q psy15912        406 TVKLNLFMNTS----PFSV--QDSTSLPRVFKLFRALGLRHVVVV--NNNNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       406 ~i~v~~im~~~----p~~V--~~~~~l~~a~~~f~~~~lr~lpVV--D~~g~lvGIITr~DLl~~~~~  465 (482)
                      ...++++|.+.    ++++  ++++++.+|.++|.+.+.+++||+  |++|+++|+||++|+++....
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            45899999987    7888  999999999999999999999999  788999999999999987543

>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...

Probab=98.27  E-value=2.3e-06  Score=89.56  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             cccccCCCchhhhhhhccc--cc-cc-cCCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh-
Q psy15912         61 GVSVSGGGMPEKYDFLSKD--NV-WK-SNGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG-  133 (482)
Q Consensus        61 ~~~~~g~G~~~~~~~l~~~--~~-~~-~~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~-  133 (482)
                      .-...|.|-+.+..+++|.  .. |. +..|.  +.+|+++|+|-|...|+..+||++|..+++.+..  +.   .+.. 
T Consensus        86 ~p~a~GsGip~v~~~l~~~~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~--~~---~~~r~  160 (446)
T 4ene_A           86 APEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL--KG---DEARH  160 (446)
T ss_dssp             CGGGSSCSHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC--CS---HHHHH
T ss_pred             CcccCCCCHHHHHHHHhCCCccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHHcCC--CH---HHHHH
Confidence            4455688888899889875  22 21 23554  8999999999999999999999999999876531  11   2333 


Q ss_pred             HHHHHHHHHHhhhhhchhHHHHHHHHHhhCC---c--hhhHHHHHHHHHHHHHhhhcC
Q psy15912        134 KYALIGAAAQLGGVVRMTISLTIILIEATGN---I--SFGLPLMLTLITAKWIGDFFT  186 (482)
Q Consensus       134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~---~--~~~~Pl~ia~~ia~~v~~~~~  186 (482)
                      .+..+|+||-++++.++|++.+++.+|....   +  ..+.|.++++++++.+++.+.
T Consensus       161 ~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~  218 (446)
T 4ene_A          161 TLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN  218 (446)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHc
Confidence            7899999999999999999999999998762   2  347899999999999998763

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.26  E-value=1.1e-06  Score=77.89  Aligned_cols=59  Identities=19%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             cccccccccccCceeeeCCCCHHHHHHHHHHcCCCE-EEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRH-VVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       405 ~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~-lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      ....++++|+++++++++++++.+|.+.|.+.+.+. +||+|++ +++|+||++|++++..
T Consensus        14 ~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~   73 (157)
T 1o50_A           14 KVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSG   73 (157)
T ss_dssp             BHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHH
T ss_pred             ccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHh
Confidence            345899999999999999999999999999999999 9999977 9999999999998643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.25  E-value=1.9e-06  Score=78.17  Aligned_cols=58  Identities=17%  Similarity=0.133  Sum_probs=52.9

Q ss_pred             ccccccccc--CceeeeCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNT--SPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN-NHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~--~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~-g~lvGIITr~DLl~~~~  464 (482)
                      ..++++|++  .++++++++++.+|.++|++.+++++||+|++ |+++|+||.+||+++..
T Consensus        36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~   96 (173)
T 3ocm_A           36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI   96 (173)
T ss_dssp             SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred             CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh
Confidence            479999974  68899999999999999999999999999876 89999999999998754

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.15  E-value=3.6e-06  Score=89.92  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             ccccccccccCceeeeCC-CCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHhHHHHHhh-cccccccccc
Q psy15912        406 TVKLNLFMNTSPFSVQDS-TSLPRVFKLFRALGLRHVVVVN-NNNHVVGMITRKDLARYRVWR-HGGRMGLEEL  476 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~-~~l~~a~~~f~~~~lr~lpVVD-~~g~lvGIITr~DLl~~~~~~-~~~~~~~~~~  476 (482)
                      ..+|+++|++++++++++ +++.++.++|++.+++++||+| ++|+++||||++||++..... ......++++
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~i  456 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKA  456 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGG
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHH
Confidence            458999999999999999 9999999999999999999999 789999999999999876543 2223445544

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.06  E-value=3.9e-06  Score=74.13  Aligned_cols=56  Identities=23%  Similarity=0.491  Sum_probs=50.8

Q ss_pred             ccccccccCc------eeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMNTSP------FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~~~p------~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++++|.+.+      +++++++++.+|.+.|.+.+.+++||+| +|+++|+||++|++++..
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~   69 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVV   69 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSG
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHH
Confidence            6999999554      8999999999999999999999999975 899999999999998754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.99  E-value=1e-05  Score=75.63  Aligned_cols=55  Identities=13%  Similarity=0.388  Sum_probs=52.0

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHc---CCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRAL---GLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~---~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      .++++|+++++++++++++.+|.+.|++.   +.+++||+|++|+++|+||.+||+..
T Consensus        55 ~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  112 (205)
T 3kxr_A           55 EIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH  112 (205)
T ss_dssp             CGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS
T ss_pred             hHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC
Confidence            68999999999999999999999999997   88999999999999999999999864

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.88  E-value=1.3e-05  Score=78.72  Aligned_cols=56  Identities=23%  Similarity=0.335  Sum_probs=52.5

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHc-----CCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRAL-----GLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~-----~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ..++++|+++++++++++++.+|.+.|++.     +++++||||++|+++|+||.+|++..
T Consensus       137 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~  197 (286)
T 2oux_A          137 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN  197 (286)
T ss_dssp             TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS
T ss_pred             HHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC
Confidence            378999999999999999999999999998     88999999989999999999999864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.74  E-value=4.4e-05  Score=74.46  Aligned_cols=55  Identities=16%  Similarity=0.335  Sum_probs=51.9

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHc-----CCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRAL-----GLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~-----~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      .++++|+++++++++++++.+|.+.|++.     ++.++||+|++|+++|+||.+|++..
T Consensus       136 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~  195 (278)
T 2yvy_A          136 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA  195 (278)
T ss_dssp             BGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS
T ss_pred             hHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence            78999999999999999999999999998     78999999989999999999999864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.53  E-value=6.3e-05  Score=79.61  Aligned_cols=53  Identities=28%  Similarity=0.429  Sum_probs=48.7

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                      .++++|.++|+++++++++.++.++|++.+++++||+|++++++||||++||.
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~  142 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR  142 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh
Confidence            56778999999999999999999999999999999999899999999999997

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.41  E-value=0.00069  Score=71.92  Aligned_cols=60  Identities=23%  Similarity=0.283  Sum_probs=55.4

Q ss_pred             ccchhhcccC-CeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        212 NITARIVKSH-PVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       212 ~l~a~dvM~~-~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ..+++|+|++ +++++++++++.+++++|++++.+.+||||++                                     
T Consensus       174 ~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-------------------------------------  216 (511)
T 3usb_A          174 SIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-------------------------------------  216 (511)
T ss_dssp             SSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-------------------------------------
T ss_pred             CCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-------------------------------------
Confidence            5689999998 99999999999999999999999999999986                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHh
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKH  314 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~  314 (482)
                            |+++|+|+.+|+++.+..
T Consensus       217 ------g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          217 ------GVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             ------SBEEEEEEHHHHHHHHHC
T ss_pred             ------CCEeeeccHHHHHHhhhc
Confidence                  799999999999988754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.37  E-value=5.1e-05  Score=80.55  Aligned_cols=59  Identities=10%  Similarity=0.106  Sum_probs=0.0

Q ss_pred             ccchhhcccCC--eeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKSHP--VICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~~~--~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ..+++|+|+++  ++++++++++.++++.|++++.+.+||||++                                    
T Consensus       160 ~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~------------------------------------  203 (503)
T 1me8_A          160 ETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD------------------------------------  203 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC------------------------------------
Confidence            46799999987  9999999999999999999999999999976                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHH
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIK  313 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~  313 (482)
                             ++++|+|+.+|+++.+.
T Consensus       204 -------g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          204 -------QHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------
T ss_pred             -------CeEEEEEEecHHHHhhh
Confidence                   69999999999987654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.34  E-value=0.00025  Score=74.61  Aligned_cols=61  Identities=18%  Similarity=0.355  Sum_probs=56.0

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++|+|++++.++++++++.++.+.|++++.+.+||||++                                      
T Consensus       218 ~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~--------------------------------------  259 (473)
T 2zy9_A          218 RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE--------------------------------------  259 (473)
T ss_dssp             TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT--------------------------------------
T ss_pred             CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC--------------------------------------
Confidence            467999999999999999999999999999999999999976                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                           |+++|+||.+|+++.+...
T Consensus       260 -----g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          260 -----GRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             -----SBEEEEEEHHHHHHHHHHH
T ss_pred             -----CEEEEEEehHhhHHHHHHH
Confidence                 7999999999999887654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.22  E-value=4.9e-05  Score=80.41  Aligned_cols=54  Identities=19%  Similarity=0.322  Sum_probs=1.2

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~  461 (482)
                      .++++|.++++++++++++.++.++|++.+++.+||+|++++++|+||.+|+..
T Consensus        96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~  149 (494)
T 1vrd_A           96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF  149 (494)
T ss_dssp             TC----------------------------------------------------
T ss_pred             hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh
Confidence            567889999999999999999999999999999999998899999999999985

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.22  E-value=0.00038  Score=73.49  Aligned_cols=54  Identities=20%  Similarity=0.325  Sum_probs=51.0

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEeHHHhHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN--NNNHVVGMITRKDLAR  461 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD--~~g~lvGIITr~DLl~  461 (482)
                      .++++|.++++++++++++.++.++|++.+.+++||+|  ++++++|+||.+|++.
T Consensus        91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            46789999999999999999999999999999999999  7899999999999985

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.90  E-value=0.00015  Score=76.70  Aligned_cols=52  Identities=27%  Similarity=0.457  Sum_probs=2.9

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA  460 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl  460 (482)
                      .++++|.++|+++++++++.++.++|++.+++++||+| +++++||||.+||.
T Consensus        89 ~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~  140 (490)
T 4avf_A           89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLR  140 (490)
T ss_dssp             HCCC-------------------------------------------------
T ss_pred             ccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhh
Confidence            57788999999999999999999999999999999999 89999999999996

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.82  E-value=0.00016  Score=76.89  Aligned_cols=55  Identities=16%  Similarity=0.298  Sum_probs=28.8

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN---NNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~---~g~lvGIITr~DLl~~  462 (482)
                      .++++|.++|+++++++++.++.++|.+.+.+.+||+|+   +++++|+||++|+...
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~  166 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL  166 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh
Confidence            567889999999999999999999999999999999997   5899999999999763

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.35  E-value=0.0006  Score=71.67  Aligned_cols=51  Identities=16%  Similarity=0.361  Sum_probs=0.8

Q ss_pred             ccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHhH
Q psy15912        410 NLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN---NNHVVGMITRKDLA  460 (482)
Q Consensus       410 ~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~---~g~lvGIITr~DLl  460 (482)
                      +..|..+|+++.|+.++.++.++|.+.++..+||+|+   +++++||||.+|+.
T Consensus       141 e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r  194 (556)
T 4af0_A          141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ  194 (556)
T ss_dssp             CC----------------------------------------------------
T ss_pred             ccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc
Confidence            3457789999999999999999999999999999986   67999999999974

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.30  E-value=0.0014  Score=69.18  Aligned_cols=58  Identities=24%  Similarity=0.365  Sum_probs=0.0

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++|+|.+++.++++++++.++++.|++++.+.+||||++                                      
T Consensus       149 ~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~--------------------------------------  190 (486)
T 2cu0_A          149 GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDER--------------------------------------  190 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecC--------------------------------------
Confidence            457899999999999999999999999999999999999975                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHH
Q psy15912        292 RKESPGRLVGLILRSQLIILI  312 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l  312 (482)
                           ++++|+|+.+|+++..
T Consensus       191 -----g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          191 -----GKLVGLITMSDLVARK  206 (486)
T ss_dssp             ---------------------
T ss_pred             -----CeEEEEEEHHHHHHhh
Confidence                 6899999999987664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	482
d1otsa_	444	f.20.1.1 (A:) Clc chloride channel {Escherichia co	3e-24
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	4e-08
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	3e-07
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	9e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	5e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	5e-06
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	5e-06
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	2e-05
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	4e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	5e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-04
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	1e-04
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	3e-04
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	3e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.001
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.001
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.001
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	0.002
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	0.003

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (256), Expect = 3e-24
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 98  SGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGKYALIGAAAQLGGVVRMTISLTII 157
            GG+F P L  G   G  F +    +FP+   ++ G +A+ G  A L   +R  ++  I+
Sbjct: 337 PGGIFAPMLALGTVLGTAFGMVAVELFPQ-YHLEAGTFAIAGMGALLAASIRAPLTGIIL 395

Query: 158 LIEATGNISFGLPLMLTLITAKWIGDFF-TEGLYDIHIQ 195
           ++E T N    LP+++T + A  +  F   + LY   + 
Sbjct: 396 VLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA 434

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 1e-08
 Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 13/116 (11%)

Query: 347 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFT 406
            RLVG +LR  LII I++   K++        S   F    P  P              T
Sbjct: 52  QRLVGFVLRRDLIISIENARKKQDGVVST---SIIYFTEHSPPLPPYTPP---------T 99

Query: 407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
           +KL   ++ SPF+V D T +  V  +FR LGLR  +V +N   ++G+IT+KD+ ++
Sbjct: 100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVLKH 154

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 12/111 (10%), Positives = 36/111 (32%)

Query: 358 LIILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSP 417
           L I ++H++          ++       +     +       +   +  ++         
Sbjct: 35  LGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGV 94

Query: 418 FSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHG 468
                  +L  +        +  +VVV+ ++ V G+++  D+ +  V   G
Sbjct: 95  LKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLTGG 145

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 11/66 (16%), Positives = 26/66 (39%)

Query: 398 VSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRK 457
           + E +    ++  +             +L    ++ +      + +VN N+ +V +I R 
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 458 DLARYR 463
           DL + R
Sbjct: 114 DLKKNR 119

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
               +   +N    SV        V +  R      V V + ++H++G++T  D+  
Sbjct: 63  DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIID 119

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 10/91 (10%), Positives = 27/91 (29%)

Query: 374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLF 433
            +  L +     +                    +          ++   +  L  +    
Sbjct: 48  ENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNI 107

Query: 434 RALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
           R   +    VV++   +VG++T  D+ +Y +
Sbjct: 108 RKARVHRFFVVDDVGRLVGVLTLSDILKYIL 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.2 bits (103), Expect = 5e-06
 Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 3/104 (2%)

Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
            + +               L    FH               +   +        +   P 
Sbjct: 38  TVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNAS---EIMLDPV 94

Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
            V   T L    KL     ++ + VV+    +VG +   ++   
Sbjct: 95  YVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLA 138

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 386 EYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN 445
           E                          ++ SPF + + TSL +   LF  LGL    V +
Sbjct: 82  EEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS 141

Query: 446 NNNHVVGMITRKDLAR 461
               +VG++   ++  
Sbjct: 142 MG-KLVGVVALAEIQA 156

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 10/64 (15%), Positives = 26/64 (40%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRM 471
                  + + +  L  +F   +   +  + VV+ N  + G+++  D+  Y ++      
Sbjct: 81  ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTP 140

Query: 472 GLEE 475
           G+ E
Sbjct: 141 GVPE 144

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 11/106 (10%), Positives = 25/106 (23%)

Query: 359 IILIKHKIYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPF 418
           +         E          +     E+        L      +     +   M     
Sbjct: 51  VDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVI 110

Query: 419 SVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
                 ++  V        +  + V+     ++G+I   DL +  V
Sbjct: 111 VATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 12/62 (19%), Positives = 22/62 (35%)

Query: 401 NDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
                  ++   MN     V+  T    V +L        + VV+    +VG++T  D+ 
Sbjct: 59  IVADPRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118

Query: 461 RY 462
             
Sbjct: 119 DV 120

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 5/51 (9%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLARY 462
                  +  + SL           +  + V++  + + + ++T K + ++
Sbjct: 102 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKF 152

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 401 NDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLA 460
           +      ++   M      V  + +      L   + +RH+ V+++   V+G+++  DL 
Sbjct: 64  DKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122

Query: 461 RYRV 464
           +  +
Sbjct: 123 KDAI 126

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 8/53 (15%), Positives = 20/53 (37%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
            ++   F V +  ++     LF      ++ VV+    + G ++  D     +
Sbjct: 65  KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 429 VFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
           V       GL    VV++   VVG++T  DL+RY
Sbjct: 91  VAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
            +      V+++ +L +  KL      R VVVV++    VG++T  D+ R   
Sbjct: 65  LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF 117

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 10/81 (12%), Positives = 27/81 (33%)

Query: 382 IFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHV 441
                       +     +     T  +  +M  +P +V +++       +        +
Sbjct: 49  RDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSL 108

Query: 442 VVVNNNNHVVGMITRKDLARY 462
            VV+ N+  VG++T ++    
Sbjct: 109 PVVDINDKPVGIVTEREFLLL 129

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 430 FKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
             L R   +RH+ VV++  ++ G+I+ +D+ R 
Sbjct: 90  LALMRQFNIRHLPVVDDKGNLKGIISIRDITRA 122

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 437 GLRHVVVVNNNNHVVGMITRKDLARYRV 464
            +RHVVVVN N  +VG+++ +DL   R 
Sbjct: 96  NIRHVVVVNKNGELVGVLSIRDLCFERA 123

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY 462
               S + V  + S+  +  +     +R V V++ +  +VG++T  D+AR+
Sbjct: 72  LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIARH 121

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 412 FMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLAR 461
            M  +  +   +T L  V +      ++H+++      +VG+ T  DL  
Sbjct: 75  IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLLE 123

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 405 FTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-----NNHVVGMITRKDL 459
              +    +      V    SL            R + +++      +  +V ++T+  +
Sbjct: 105 EVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRI 164

Query: 460 ARY 462
            ++
Sbjct: 165 LKF 167

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 421 QDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR 463
              T L    ++     +  + +V+N+  + G+IT KD+ +  
Sbjct: 74  AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 116

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 5/36 (13%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 429 VFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV 464
             +      +  ++V  ++  ++G+I+  D+ R ++
Sbjct: 86  AAEKMVKNVVWRLLVEEDD-EIIGVISATDILRAKM 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	482
d1otsa_	444	Clc chloride channel {Escherichia coli [TaxId: 562	99.86
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.8
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.79
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.79
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.79
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.78
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.78
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.77
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.76
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.76
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.76
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.75
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.74
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.73
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.73
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.72
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.7
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.7
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.67
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.65
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.65
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.65
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.64
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.81
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.72
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.72
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.62
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.61
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.6
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.58
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.57
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.56
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.52
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.49
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.48
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.48
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.47
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.43
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.42
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.36
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.27
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.21
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.2
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.09
d1otsa_	444	Clc chloride channel {Escherichia coli [TaxId: 562	98.05
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.04
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.99
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.88
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.86
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.83
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	84.98

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6e-22  Score=205.79  Aligned_cols=136  Identities=24%  Similarity=0.398  Sum_probs=124.0

Q ss_pred             cccccCCCchhhhhhhcccccccc-----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchh
Q psy15912         61 GVSVSGGGMPEKYDFLSKDNVWKS-----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPG  133 (482)
Q Consensus        61 ~~~~~g~G~~~~~~~l~~~~~~~~-----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~  133 (482)
                      .-.+.|+||+.++..++++..+..     +.|+  |++|+++|.+||+|+|++++||++|+++|.++..++|... ++|+
T Consensus       293 ~p~~~g~G~~~~~~~~~~~~~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~~~~~-~~~~  371 (444)
T d1otsa_         293 APATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYH-LEAG  371 (444)
T ss_dssp             CGGGSSCSTTHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGT-CCHH
T ss_pred             CcccCCCchHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHHHHHHHhCCccc-CCHH
Confidence            445789999999999999866544     2455  9999999999999999999999999999999999888754 7899


Q ss_pred             HHHHHHHHHHhhhhhchhHHHHHHHHHhhCCchhhHHHHHHHHHHHHHhhhcC-CChhHHHHHHc
Q psy15912        134 KYALIGAAAQLGGVVRMTISLTIILIEATGNISFGLPLMLTLITAKWIGDFFT-EGLYDIHIQLS  197 (482)
Q Consensus       134 ~~a~vG~aa~~~g~~~~p~s~~vi~~Eltg~~~~~~Pl~ia~~ia~~v~~~~~-~siy~~~L~~~  197 (482)
                      .|+++||++++++++|+|++++++++|+||++++++|+|+++++|+++++.++ +++||.++++.
T Consensus       372 ~~alvGmaa~~a~~~~~Plta~vl~~Eltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~~~l~~~  436 (444)
T d1otsa_         372 TFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART  436 (444)
T ss_dssp             HHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986 79999998753

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.80  E-value=7.4e-19  Score=155.87  Aligned_cols=151  Identities=21%  Similarity=0.310  Sum_probs=113.9

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ...++|+|||+++++++++++++.+++++|++++++++||+|+++                                   
T Consensus         8 ~~~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~-----------------------------------   52 (160)
T d2d4za3           8 KYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD-----------------------------------   52 (160)
T ss_dssp             CSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT-----------------------------------
T ss_pred             ccceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccc-----------------------------------
Confidence            347899999999999999999999999999999999999999752                                   


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                            ++.++|+++..|+..++.+..........+.                         ..+..+........    
T Consensus        53 ------~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~----   97 (160)
T d2d4za3          53 ------TNTLLGSIDRTEVEGLLQRRISAYRRQPFEE-------------------------MLTLEEIYRWEQRE----   97 (160)
T ss_dssp             ------TCBEEEEEEHHHHHHHHHHHHHTTSSSCCCS-------------------------CCBHHHHHHHHHHH----
T ss_pred             ------cccccccchHHHHHHHHhhccccccccchhh-------------------------ccccchhhhhhhhh----
Confidence                  3689999999999988876532111100000                         00000000000000    


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                       .               ......+.++|+++|+++.+++++.+++++|.+.+++++||+| +|+
T Consensus        98 -----------------~---------------~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~  144 (160)
T d2d4za3          98 -----------------K---------------NVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGK  144 (160)
T ss_dssp             -----------------T---------------TCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTE
T ss_pred             -----------------c---------------ccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCE
Confidence                             0               0112357889999999999999999999999999999999997 799


Q ss_pred             EEEEEeHHHhHHHH
Q psy15912        450 VVGMITRKDLARYR  463 (482)
Q Consensus       450 lvGIITr~DLl~~~  463 (482)
                      ++||||++||+++.
T Consensus       145 lvGiIt~~Di~k~I  158 (160)
T d2d4za3         145 LVGVVALAEIQAAI  158 (160)
T ss_dssp             EEEEEEHHHHHHHH
T ss_pred             EEEEEEHHHHHHHh
Confidence            99999999999864

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=3e-19  Score=156.62  Aligned_cols=124  Identities=21%  Similarity=0.282  Sum_probs=110.1

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      .++|+|+|++++.++++++++.++++.|.+++++.+||+|++                                      
T Consensus         2 ~m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~--------------------------------------   43 (142)
T d1pvma4           2 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN--------------------------------------   43 (142)
T ss_dssp             CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT--------------------------------------
T ss_pred             eEEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccC--------------------------------------
Confidence            478999999999999999999999999999999999999875                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                           ++++|+++.+|+++.+....                                                       
T Consensus        44 -----~~~~Giit~~di~~~~~~~~-------------------------------------------------------   63 (142)
T d1pvma4          44 -----GNDVGLLSERSIIKRFIPRN-------------------------------------------------------   63 (142)
T ss_dssp             -----SCEEEEEEHHHHHHHTGGGC-------------------------------------------------------
T ss_pred             -----CcccceEEeechhhhhhhhc-------------------------------------------------------
Confidence                 69999999999976553320                                                       


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                                                    ......+++++|+++++++++++++.++.++|.+.+++++||||++|+++
T Consensus        64 ------------------------------~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~  113 (142)
T d1pvma4          64 ------------------------------KKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVV  113 (142)
T ss_dssp             ------------------------------CCGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEE
T ss_pred             ------------------------------ccccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEE
Confidence                                          00122478999999999999999999999999999999999999999999


Q ss_pred             EEEeHHHhHHHH
Q psy15912        452 GMITRKDLARYR  463 (482)
Q Consensus       452 GIITr~DLl~~~  463 (482)
                      |+||++|++++.
T Consensus       114 Giit~~Dil~~l  125 (142)
T d1pvma4         114 GIVTLTDLSRYL  125 (142)
T ss_dssp             EEEEHHHHTTTS
T ss_pred             EEEEHHHHHHHH
Confidence            999999999864

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.79  E-value=5.3e-19  Score=151.91  Aligned_cols=123  Identities=20%  Similarity=0.358  Sum_probs=110.0

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ....|+|+|+++++++.+++++.++++.|.+++++.+||+|+                                      
T Consensus         2 ~~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--------------------------------------   43 (127)
T d2ef7a1           2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--------------------------------------   43 (127)
T ss_dssp             CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--------------------------------------
T ss_pred             CccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc--------------------------------------
Confidence            456899999999999999999999999999999999999985                                      


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                            ++++|+++..|+.+.+.+..                                                      
T Consensus        44 ------~~~~Givt~~dl~~~~~~~~------------------------------------------------------   63 (127)
T d2ef7a1          44 ------NKPVGIITERDIVKAIGKGK------------------------------------------------------   63 (127)
T ss_dssp             ------TEEEEEEEHHHHHHHHHTTC------------------------------------------------------
T ss_pred             ------cchhhhcchhHHHHHHHhhc------------------------------------------------------
Confidence                  48999999999987765431                                                      


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                                                       ....+++++|+++|+++++++++.++.++|.+.+++++||+|++|++
T Consensus        64 ---------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l  110 (127)
T d2ef7a1          64 ---------------------------------SLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNL  110 (127)
T ss_dssp             ---------------------------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             ---------------------------------cccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeE
Confidence                                             01126889999999999999999999999999999999999999999


Q ss_pred             EEEEeHHHhHHHHH
Q psy15912        451 VGMITRKDLARYRV  464 (482)
Q Consensus       451 vGIITr~DLl~~~~  464 (482)
                      +|+||+.|++++..
T Consensus       111 vGiit~~Dll~~i~  124 (127)
T d2ef7a1         111 KGIISIRDITRAID  124 (127)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999998754

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=6.7e-20  Score=156.62  Aligned_cols=117  Identities=22%  Similarity=0.402  Sum_probs=89.6

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      ++++|+|+++++++++++++.+++++|.+++++.+||+|++                                       
T Consensus         1 m~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~---------------------------------------   41 (122)
T d2yzqa2           1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE---------------------------------------   41 (122)
T ss_dssp             CBHHHHSEESCCCEESSCC------------CCEEEEECTT---------------------------------------
T ss_pred             CCcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEecc---------------------------------------
Confidence            57999999999999999999999999999999999999876                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          |+++|+|+.+|++.....                                                          
T Consensus        42 ----~~~~G~it~~dl~~~~~~----------------------------------------------------------   59 (122)
T d2yzqa2          42 ----GKLVGIISVKRILVNPDE----------------------------------------------------------   59 (122)
T ss_dssp             ----CCEEEEEESSCC----------------------------------------------------------------
T ss_pred             ----ccchhhhhcchhhhhhcc----------------------------------------------------------
Confidence                799999998887543111                                                          


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                        ..+.++|.++++++++++++.++.++|.+.+.+++||||++|+++|
T Consensus        60 ----------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liG  105 (122)
T d2yzqa2          60 ----------------------------------EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVG  105 (122)
T ss_dssp             --------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             ----------------------------------cchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEE
Confidence                                              1578889999999999999999999999999999999999999999


Q ss_pred             EEeHHHhHHHHH
Q psy15912        453 MITRKDLARYRV  464 (482)
Q Consensus       453 IITr~DLl~~~~  464 (482)
                      +||++|++++..
T Consensus       106 iit~~dil~~~~  117 (122)
T d2yzqa2         106 ILTVGDIIRRYF  117 (122)
T ss_dssp             EEEHHHHHHHTT
T ss_pred             EEEHHHHHHHHH
Confidence            999999998644

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.79  E-value=1.8e-19  Score=155.09  Aligned_cols=117  Identities=23%  Similarity=0.251  Sum_probs=103.8

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCC-----CCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATS-----HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~-----~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      ||+.+|++++++++++.++.++++.|++++     .+.+||||++                                   
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-----------------------------------   46 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----------------------------------   46 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----------------------------------
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-----------------------------------
Confidence            789999999999999999999999998863     5789999986                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              ++++|+++..++...   .                                                     
T Consensus        47 --------~~l~G~v~~~~l~~~---~-----------------------------------------------------   62 (127)
T d2ouxa2          47 --------NHLVGVISLRDLIVN---D-----------------------------------------------------   62 (127)
T ss_dssp             --------CBEEEEEEHHHHTTS---C-----------------------------------------------------
T ss_pred             --------CeEEEEEEeeccccc---c-----------------------------------------------------
Confidence                    699999998886311   0                                                     


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                                          ...+++++|+++++++++++++.+|.++|.+.+++++||||++|
T Consensus        63 ------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g  106 (127)
T d2ouxa2          63 ------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD  106 (127)
T ss_dssp             ------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC
T ss_pred             ------------------------------------ccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCC
Confidence                                                11279999999999999999999999999999999999999999


Q ss_pred             eEEEEEeHHHhHHHHHh
Q psy15912        449 HVVGMITRKDLARYRVW  465 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~~  465 (482)
                      +++|+||++|++++...
T Consensus       107 ~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2         107 HLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             BEEEEEEHHHHHHHHHH
T ss_pred             EEEEEEEHHHHHHHHHH
Confidence            99999999999987643

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=2.1e-19  Score=153.62  Aligned_cols=120  Identities=22%  Similarity=0.337  Sum_probs=104.3

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      ||+|+|+++++++.+++++.++++.|.+++++.+||+|++                                        
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~----------------------------------------   41 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDD----------------------------------------   41 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG----------------------------------------
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEecc----------------------------------------
Confidence            7999999999999999999999999999999999999875                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                         ++++|+++.+|+........                                                      .  
T Consensus        42 ---~~~~Giit~~Di~~~~~~~~------------------------------------------------------~--   62 (123)
T d1y5ha3          42 ---DRLHGMLTDRDIVIKGLAAG------------------------------------------------------L--   62 (123)
T ss_dssp             ---GBEEEEEEHHHHHHTTGGGT------------------------------------------------------C--
T ss_pred             ---chhhhhhhhhhHhhhhhhcC------------------------------------------------------C--
Confidence               69999999999865332210                                                      0  


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM  453 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGI  453 (482)
                                                   ......++++|+++++++++++++.+|+++|.+.+++++||+| +|+++|+
T Consensus        63 -----------------------------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGi  112 (123)
T d1y5ha3          63 -----------------------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGI  112 (123)
T ss_dssp             -----------------------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEE
T ss_pred             -----------------------------CcccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEE
Confidence                                         0012267889999999999999999999999999999999998 6899999


Q ss_pred             EeHHHhHHH
Q psy15912        454 ITRKDLARY  462 (482)
Q Consensus       454 ITr~DLl~~  462 (482)
                      ||++|++++
T Consensus       113 it~~Dil~~  121 (123)
T d1y5ha3         113 VTEADIARH  121 (123)
T ss_dssp             EEHHHHHHT
T ss_pred             EEHHHHHhh
Confidence            999999975

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=4.3e-19  Score=154.87  Aligned_cols=131  Identities=19%  Similarity=0.261  Sum_probs=110.5

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      ++|+|+|++++.++.+++++.++++.|.+++++.+||+|++                                       
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~---------------------------------------   42 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN---------------------------------------   42 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------------------------
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc---------------------------------------
Confidence            68999999999999999999999999999999999999975                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+|+.+|++..+........                                                    
T Consensus        43 ----~~~~Giit~~dl~~~~~~~~~~~~----------------------------------------------------   66 (139)
T d2o16a3          43 ----KKLLGIVSQRDLLAAQESSLQRSA----------------------------------------------------   66 (139)
T ss_dssp             ----CBEEEEEEHHHHHHHHHHHCC-------------------------------------------------------
T ss_pred             ----ccccccccHHHHHHHHHhhhhhhh----------------------------------------------------
Confidence                699999999999887655310000                                                    


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                .........+++++|+++|+++++++++.+|.++|.+.+++++||+| +|+++|
T Consensus        67 --------------------------~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvG  119 (139)
T d2o16a3          67 --------------------------QGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVG  119 (139)
T ss_dssp             --------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEE
T ss_pred             --------------------------cccccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEE
Confidence                                      00001123479999999999999999999999999999999999998 589999


Q ss_pred             EEeHHHhHHHHHh
Q psy15912        453 MITRKDLARYRVW  465 (482)
Q Consensus       453 IITr~DLl~~~~~  465 (482)
                      +||++|++++...
T Consensus       120 iit~~Dil~~~~~  132 (139)
T d2o16a3         120 IITDSDFVTIAIN  132 (139)
T ss_dssp             EECHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHH
Confidence            9999999998653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=3.1e-19  Score=158.36  Aligned_cols=154  Identities=12%  Similarity=0.143  Sum_probs=110.0

Q ss_pred             cccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        211 SNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       211 ~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      ++++++++|.++++++++++++.+++++|++++++++||+|++                                     
T Consensus         2 ~~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-------------------------------------   44 (156)
T d2yzqa1           2 KGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-------------------------------------   44 (156)
T ss_dssp             GGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-------------------------------------
T ss_pred             CCCCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-------------------------------------
Confidence            4688999999999999999999999999999999999999875                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                            |+++|+++..|+++................                    ......              ... 
T Consensus        45 ------~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~--------------------~~~~~~--------------~~~-   83 (156)
T d2yzqa1          45 ------GNLVGIVDETDLLRDSEIVRIMKSTELAAS--------------------SEEEWI--------------LES-   83 (156)
T ss_dssp             ------SCEEEEEEGGGGGGCGGGCC------------------------------------------------------
T ss_pred             ------CCceeEEeeeechhhhcccccccccccccc--------------------hhhhhh--------------hhh-
Confidence                  699999999998654332210000000000                    000000              000 


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                             .....+...              .......++.++|+++++++++++++.++.+.|.+.+.+++||+|++|++
T Consensus        84 -------~~~~~~~~~--------------~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l  142 (156)
T d2yzqa1          84 -------HPTLLFEKF--------------ELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDL  142 (156)
T ss_dssp             ----------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEE
T ss_pred             -------hhhhhHHHh--------------hhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEE
Confidence                   000000000              00112347899999999999999999999999999999999999999999


Q ss_pred             EEEEeHHHhHHHH
Q psy15912        451 VGMITRKDLARYR  463 (482)
Q Consensus       451 vGIITr~DLl~~~  463 (482)
                      +||||++|++++.
T Consensus       143 vGivt~~Dil~~l  155 (156)
T d2yzqa1         143 IGLIRDFDLLKVL  155 (156)
T ss_dssp             EEEEEHHHHGGGG
T ss_pred             EEEEEHHHHHHHh
Confidence            9999999999863

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.8e-19  Score=158.53  Aligned_cols=119  Identities=21%  Similarity=0.257  Sum_probs=104.7

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCC-----CCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATS-----HNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~-----~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      ||+++|+++++++++++++.++++.|++++     .+.+||+|++                                   
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-----------------------------------   46 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------------------------------   46 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-----------------------------------
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-----------------------------------
Confidence            689999999999999999999999998774     5788999986                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              ++++|+++.+|+....                                                        
T Consensus        47 --------~~l~G~v~~~dl~~~~--------------------------------------------------------   62 (144)
T d2yvxa2          47 --------GRLKGVLSLRDLIVAD--------------------------------------------------------   62 (144)
T ss_dssp             --------CBBCCBCBHHHHTTSC--------------------------------------------------------
T ss_pred             --------CCEecccchhhhhhcc--------------------------------------------------------
Confidence                    7999999999973210                                                        


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                                                          ...+++++|+++++++++++++.+|.++|.+.+++++||||++|
T Consensus        63 ------------------------------------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g  106 (144)
T d2yvxa2          63 ------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG  106 (144)
T ss_dssp             ------------------------------------TTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSC
T ss_pred             ------------------------------------cccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECC
Confidence                                                01268899999999999999999999999999999999999999


Q ss_pred             eEEEEEeHHHhHHHHHhhc
Q psy15912        449 HVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~~~~  467 (482)
                      +++|+||++|++++.....
T Consensus       107 ~lvGiIt~~Dil~~l~~e~  125 (144)
T d2yvxa2         107 RLVGIVTVDDVLDVLEAEA  125 (144)
T ss_dssp             BEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEEEHHHHHHHHHHHh
Confidence            9999999999998865443

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=4.6e-19  Score=154.54  Aligned_cols=131  Identities=15%  Similarity=0.247  Sum_probs=112.0

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      ++|+++|+++++++++++++.+++++|.+++++.+||+|++                                       
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~---------------------------------------   42 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD---------------------------------------   42 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------------------------
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc---------------------------------------
Confidence            68999999999999999999999999999999999999986                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+++..|+.+.+........                                                    
T Consensus        43 ----~~~~g~i~~~di~~~~~~~~~~~~----------------------------------------------------   66 (141)
T d3ddja1          43 ----NKVVGIVTVVNAIKQLAKAVDKLD----------------------------------------------------   66 (141)
T ss_dssp             ----SCEEEEEEHHHHHHHHHHHHHHTC----------------------------------------------------
T ss_pred             ----Cccccccccccchhhhhccccccc----------------------------------------------------
Confidence                689999999999877654310000                                                    


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                             .                     ......+++++|+++++++++++++.++.++|.+.+++++||+|++|+++|
T Consensus        67 -------~---------------------~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iG  118 (141)
T d3ddja1          67 -------P---------------------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRG  118 (141)
T ss_dssp             -------T---------------------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             -------c---------------------ccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEE
Confidence                   0                     000123789999999999999999999999999999999999999999999


Q ss_pred             EEeHHHhHHHHHhh
Q psy15912        453 MITRKDLARYRVWR  466 (482)
Q Consensus       453 IITr~DLl~~~~~~  466 (482)
                      +||++|++++....
T Consensus       119 iIt~~Dil~~l~~~  132 (141)
T d3ddja1         119 IITERDLLIALHHI  132 (141)
T ss_dssp             EEEHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHHH
Confidence            99999999886543

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=2.7e-18  Score=148.46  Aligned_cols=124  Identities=15%  Similarity=0.309  Sum_probs=108.3

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      .+++|+|+++++++.+++++.++++.|.+++++.+||+|++                                       
T Consensus         5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~---------------------------------------   45 (132)
T d2yzia1           5 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD---------------------------------------   45 (132)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT---------------------------------------
T ss_pred             CcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc---------------------------------------
Confidence            47999999999999999999999999999999999999986                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+++..|+++.+....                                                        
T Consensus        46 ----~~~~Giit~~di~~~~~~~~--------------------------------------------------------   65 (132)
T d2yzia1          46 ----GNVVGFFTKSDIIRRVIVPG--------------------------------------------------------   65 (132)
T ss_dssp             ----SCEEEEEEHHHHHHHTTTTC--------------------------------------------------------
T ss_pred             ----ceeeeeeeHHHHHHHHhhcc--------------------------------------------------------
Confidence                69999999999976543220                                                        


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                    .....+++++|.+++.++++++++.+++++|.+.+.+++||+| +|+++|
T Consensus        66 ------------------------------~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vG  114 (132)
T d2yzia1          66 ------------------------------LPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVG  114 (132)
T ss_dssp             ------------------------------CCTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEE
T ss_pred             ------------------------------CccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEE
Confidence                                          0012378999999999999999999999999999999999875 799999


Q ss_pred             EEeHHHhHHHHHhh
Q psy15912        453 MITRKDLARYRVWR  466 (482)
Q Consensus       453 IITr~DLl~~~~~~  466 (482)
                      +||++|++++...+
T Consensus       115 ivt~~Dil~a~~~~  128 (132)
T d2yzia1         115 IFTLSDLLEASRRR  128 (132)
T ss_dssp             EEEHHHHHHHHHCC
T ss_pred             EEEHHHHHHHHHHH
Confidence            99999999976533

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.9e-18  Score=145.79  Aligned_cols=119  Identities=13%  Similarity=0.170  Sum_probs=105.5

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      +++|+|++++.++++++++.++++.|++++++.+||+++                                         
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~-----------------------------------------   39 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE-----------------------------------------   39 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET-----------------------------------------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC-----------------------------------------
Confidence            479999999999999999999999999999999999875                                         


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                         ++++|+++.+|+.+.+....                                                         
T Consensus        40 ---~~~~Gvit~~Di~~~l~~~~---------------------------------------------------------   59 (120)
T d1pbja3          40 ---GVRVGIVTTWDVLEAIAEGD---------------------------------------------------------   59 (120)
T ss_dssp             ---TEEEEEEEHHHHHHHHHHTC---------------------------------------------------------
T ss_pred             ---CcEEEEEEeeeccccccccc---------------------------------------------------------
Confidence               48999999999988775431                                                         


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM  453 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGI  453 (482)
                                                   .....++.++|+++++++++++++.+|+++|++.+++++||+| +|+++|+
T Consensus        60 -----------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Gi  109 (120)
T d1pbja3          60 -----------------------------DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGV  109 (120)
T ss_dssp             -----------------------------CTTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEE
T ss_pred             -----------------------------cccceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEE
Confidence                                         0012378999999999999999999999999999999999986 7899999


Q ss_pred             EeHHHhHHHH
Q psy15912        454 ITRKDLARYR  463 (482)
Q Consensus       454 ITr~DLl~~~  463 (482)
                      ||++|++++.
T Consensus       110 vt~~Dil~A~  119 (120)
T d1pbja3         110 ISATDILRAK  119 (120)
T ss_dssp             EEHHHHHHHH
T ss_pred             EEHHHHHhcC
Confidence            9999999874

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.6e-18  Score=147.64  Aligned_cols=118  Identities=14%  Similarity=0.187  Sum_probs=106.3

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      |+++++|++++.+++++++++++++.|++++++.+||+|++                                       
T Consensus         1 m~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~---------------------------------------   41 (121)
T d1vr9a3           1 MKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE---------------------------------------   41 (121)
T ss_dssp             CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT---------------------------------------
T ss_pred             CCchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC---------------------------------------
Confidence            57999999999999999999999999999999999999875                                       


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                          ++++|+++..|+.++.                                                            
T Consensus        42 ----~~~~Gii~~~dl~~~~------------------------------------------------------------   57 (121)
T d1vr9a3          42 ----GHFRGVVNKEDLLDLD------------------------------------------------------------   57 (121)
T ss_dssp             ----SBEEEEEEGGGGTTSC------------------------------------------------------------
T ss_pred             ----ceeEEEeehhhhhhhh------------------------------------------------------------
Confidence                6999999998874210                                                            


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                      ...++.++|+++|+++++++++.++.+.|.+.+..++||||++|+++|
T Consensus        58 --------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~G  105 (121)
T d1vr9a3          58 --------------------------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKG  105 (121)
T ss_dssp             --------------------------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEE
T ss_pred             --------------------------------ccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEE
Confidence                                            012688899999999999999999999999999999999999999999


Q ss_pred             EEeHHHhHHHHHh
Q psy15912        453 MITRKDLARYRVW  465 (482)
Q Consensus       453 IITr~DLl~~~~~  465 (482)
                      +||++|++++...
T Consensus       106 vit~~dil~~l~~  118 (121)
T d1vr9a3         106 AVSLHDFLEALIE  118 (121)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHH
Confidence            9999999998653

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=5.1e-18  Score=145.68  Aligned_cols=121  Identities=17%  Similarity=0.249  Sum_probs=104.8

Q ss_pred             cchhhccc---CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        213 ITARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       213 l~a~dvM~---~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      -|++|+|.   ++++++++++++.++++.|.+++++++||+|+                                     
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~-------------------------------------   44 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-------------------------------------   44 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET-------------------------------------
T ss_pred             ccHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC-------------------------------------
Confidence            37999997   48999999999999999999999999999984                                     


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                             ++++|++|+.|+++.+....                                                     
T Consensus        45 -------~~~vGiit~~Di~~~~~~~~-----------------------------------------------------   64 (127)
T d2rc3a1          45 -------EKLVGILTERDFSRKSYLLD-----------------------------------------------------   64 (127)
T ss_dssp             -------TEEEEEEEHHHHHHHGGGSS-----------------------------------------------------
T ss_pred             -------CeEEEEEEccchhhhhhhhc-----------------------------------------------------
Confidence                   48999999999976543210                                                     


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCe
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNH  449 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~  449 (482)
                                                      ......+++++|+++++++.+++++.+|+++|.+.+++++||+| +|+
T Consensus        65 --------------------------------~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~  111 (127)
T d2rc3a1          65 --------------------------------KPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGK  111 (127)
T ss_dssp             --------------------------------SCGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTE
T ss_pred             --------------------------------ccccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCE
Confidence                                            00122378999999999999999999999999999999999998 699


Q ss_pred             EEEEEeHHHhHHHH
Q psy15912        450 VVGMITRKDLARYR  463 (482)
Q Consensus       450 lvGIITr~DLl~~~  463 (482)
                      ++|+||++|++++.
T Consensus       112 ~~GiIt~~Dil~~~  125 (127)
T d2rc3a1         112 VIGLLSIGDLVKDA  125 (127)
T ss_dssp             EEEEEEHHHHHHHH
T ss_pred             EEEEEEHHHHHHHH
Confidence            99999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-17  Score=148.99  Aligned_cols=153  Identities=30%  Similarity=0.438  Sum_probs=110.9

Q ss_pred             ccchhhcccC----Ce--eEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCC
Q psy15912        212 NITARIVKSH----PV--ICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSS  285 (482)
Q Consensus       212 ~l~a~dvM~~----~~--~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (482)
                      ...|+|+|.+    ++  +.+.++.+++++.++|++++++++|||++++                               
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~-------------------------------   50 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-------------------------------   50 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-------------------------------
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCC-------------------------------
Confidence            4679999964    22  4456788999999999999999999996542                               


Q ss_pred             CCCCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhh
Q psy15912        286 HKGDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHK  365 (482)
Q Consensus       286 ~~~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~  365 (482)
                                +++++|+|+++||+.++..............                                       
T Consensus        51 ----------~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~---------------------------------------   81 (169)
T d2j9la1          51 ----------SQRLVGFVLRRDLIISIENARKKQDGVVSTS---------------------------------------   81 (169)
T ss_dssp             ----------TCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC---------------------------------------
T ss_pred             ----------CCeEEEEEEhHHHHHHHhcccccccccccch---------------------------------------
Confidence                      3789999999999988875431111000000                                       


Q ss_pred             hhccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEEC
Q psy15912        366 IYKENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVN  445 (482)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD  445 (482)
                                    ...+......         .........+++++|+++|+++.+++++.+++++|.+.+.+++||+|
T Consensus        82 --------------~~~~~~~~~~---------~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d  138 (169)
T d2j9la1          82 --------------IIYFTEHSPP---------LPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  138 (169)
T ss_dssp             --------------EEECSSSCCC---------CCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             --------------hhhhcccchh---------hhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence                          0000000000         00011234589999999999999999999999999999999999986


Q ss_pred             CCCeEEEEEeHHHhHHHHHhhcc
Q psy15912        446 NNNHVVGMITRKDLARYRVWRHG  468 (482)
Q Consensus       446 ~~g~lvGIITr~DLl~~~~~~~~  468 (482)
                       +|+++||||++|++++......
T Consensus       139 -~g~lvGiIt~~Dil~~l~~~~~  160 (169)
T d2j9la1         139 -NGRLLGIITKKDVLKHIAQMAN  160 (169)
T ss_dssp             -TTEEEEEEEHHHHHHHHHHHCC
T ss_pred             -CCEEEEEEEHHHHHHHHHHHhc
Confidence             7899999999999998765443

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=5.8e-18  Score=146.18  Aligned_cols=127  Identities=17%  Similarity=0.134  Sum_probs=106.4

Q ss_pred             cchhhcc--cCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCC
Q psy15912        213 ITARIVK--SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDA  290 (482)
Q Consensus       213 l~a~dvM--~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (482)
                      .+++++|  .++++++.+++++.+++++|.+++++.+||+|++                                     
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-------------------------------------   44 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-------------------------------------   44 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------------------------------
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-------------------------------------
Confidence            4789999  5689999999999999999999999999999975                                     


Q ss_pred             CCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccC
Q psy15912        291 SRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKEN  370 (482)
Q Consensus       291 ~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~  370 (482)
                            ++++|+++..|+.+.+.....                                                     
T Consensus        45 ------~~~vGiit~~di~~~~~~~~~-----------------------------------------------------   65 (132)
T d1yava3          45 ------YRLHGLIGTNMIMNSIFGLER-----------------------------------------------------   65 (132)
T ss_dssp             ------CBEEEEEEHHHHHHHHBCSSS-----------------------------------------------------
T ss_pred             ------cccccEEEcchhHHHhhcccc-----------------------------------------------------
Confidence                  699999999999887643210                                                     


Q ss_pred             CCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeE
Q psy15912        371 QNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHV  450 (482)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~l  450 (482)
                             ...                     +.....+++++|+++++++++++++.++.++|.+.  +.+||||++|++
T Consensus        66 -------~~~---------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~~~~~  115 (132)
T d1yava3          66 -------IEF---------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINN--GFVCVENDEQVF  115 (132)
T ss_dssp             -------BCG---------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTC--SEEEEECTTCBE
T ss_pred             -------ccc---------------------cccccccccccccccccccccchhHHHHHHHHHhC--CEEEEEccCCEE
Confidence                   000                     00112378999999999999999999999999765  569999999999


Q ss_pred             EEEEeHHHhHHHHHh
Q psy15912        451 VGMITRKDLARYRVW  465 (482)
Q Consensus       451 vGIITr~DLl~~~~~  465 (482)
                      +||||++|++++..+
T Consensus       116 ~Givt~~dil~~l~~  130 (132)
T d1yava3         116 EGIFTRRVVLKELNK  130 (132)
T ss_dssp             EEEEEHHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHh
Confidence            999999999998654

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=1.9e-17  Score=142.50  Aligned_cols=123  Identities=21%  Similarity=0.311  Sum_probs=105.0

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      ++|+|+|+++++++++++++.++++.|.+++.+.+||++.+.                                      
T Consensus         1 ~~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~--------------------------------------   42 (131)
T d2riha1           1 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN--------------------------------------   42 (131)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE--------------------------------------
T ss_pred             CCHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC--------------------------------------
Confidence            579999999999999999999999999999999999996542                                      


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                         +++++|+++..|+.+.+....                                                        
T Consensus        43 ---~~~~iGi~~~~dl~~~~~~~~--------------------------------------------------------   63 (131)
T d2riha1          43 ---PKRPVAVVSERDILRAVAQRL--------------------------------------------------------   63 (131)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTC--------------------------------------------------------
T ss_pred             ---CCEEEEEEeeecccccccccc--------------------------------------------------------
Confidence               268999999999987765431                                                        


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                                                      ........+.++++++.+++++.++.++|.+.+++++||||++|+++|
T Consensus        64 --------------------------------~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~G  111 (131)
T d2riha1          64 --------------------------------DLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVG  111 (131)
T ss_dssp             --------------------------------CTTSBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             --------------------------------ccccccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEE
Confidence                                            000233445677889999999999999999999999999999999999


Q ss_pred             EEeHHHhHHHHH
Q psy15912        453 MITRKDLARYRV  464 (482)
Q Consensus       453 IITr~DLl~~~~  464 (482)
                      +||++||+++..
T Consensus       112 iit~~Dll~~~~  123 (131)
T d2riha1         112 VLSIRDLCFERA  123 (131)
T ss_dssp             EEEHHHHHSCHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999998754

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.72  E-value=1.6e-17  Score=142.33  Aligned_cols=117  Identities=17%  Similarity=0.261  Sum_probs=98.1

Q ss_pred             cccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q psy15912        218 VKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPG  297 (482)
Q Consensus       218 vM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  297 (482)
                      -|.++++++++++++.+++++|.+++++++||+|+..                                         ++
T Consensus         2 gmi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~-----------------------------------------~~   40 (126)
T d1zfja4           2 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----------------------------------------NR   40 (126)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----------------------------------------TC
T ss_pred             CCEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeecc-----------------------------------------CC
Confidence            3677788999999999999999999999999999742                                         36


Q ss_pred             eEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCC
Q psy15912        298 RLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQ  377 (482)
Q Consensus       298 ~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~  377 (482)
                      +++|+|+.+|+.......                                                              
T Consensus        41 ~lvGivt~~Di~~~~~~~--------------------------------------------------------------   58 (126)
T d1zfja4          41 KLVGIITNRDMRFISDYN--------------------------------------------------------------   58 (126)
T ss_dssp             BEEEEEEHHHHHHCSCSS--------------------------------------------------------------
T ss_pred             eEEEEeEHHHHHHhhccC--------------------------------------------------------------
Confidence            899999999985431110                                                              


Q ss_pred             CChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHH
Q psy15912        378 LSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRK  457 (482)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~  457 (482)
                                                  ......+|.++++++++++++.+|.++|.+.+++++||||++|+++||||++
T Consensus        59 ----------------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~  110 (126)
T d1zfja4          59 ----------------------------APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIK  110 (126)
T ss_dssp             ----------------------------SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHH
T ss_pred             ----------------------------CceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHH
Confidence                                        0022345677888999999999999999999999999999999999999999


Q ss_pred             HhHHHHHh
Q psy15912        458 DLARYRVW  465 (482)
Q Consensus       458 DLl~~~~~  465 (482)
                      |++++..+
T Consensus       111 Dil~~~~~  118 (126)
T d1zfja4         111 DIEKVIEF  118 (126)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99998654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=5.3e-18  Score=146.66  Aligned_cols=131  Identities=12%  Similarity=0.168  Sum_probs=107.3

Q ss_pred             cchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q psy15912        213 ITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASR  292 (482)
Q Consensus       213 l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (482)
                      ++++|+|.++++++++++++.++++.|++.+++.+||+|+                                        
T Consensus         1 m~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~----------------------------------------   40 (135)
T d3ddja2           1 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE----------------------------------------   40 (135)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS----------------------------------------
T ss_pred             CEeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec----------------------------------------
Confidence            5799999999999999999999999999999999999964                                        


Q ss_pred             CCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCC
Q psy15912        293 KESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQN  372 (482)
Q Consensus       293 ~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~  372 (482)
                           +++|+++..++...+.......                                                     
T Consensus        41 -----~lvg~~~~~~~~~~~~~~~~~~-----------------------------------------------------   62 (135)
T d3ddja2          41 -----KIEGLLTTRDLLSTVESYCKDS-----------------------------------------------------   62 (135)
T ss_dssp             -----SEEEEEEHHHHHGGGTTCC--------------------------------------------------------
T ss_pred             -----ceeceeeccchhhhhccccccc-----------------------------------------------------
Confidence                 6999999999876543221000                                                     


Q ss_pred             CCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEE
Q psy15912        373 WPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVG  452 (482)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvG  452 (482)
                            .....                 .......+++++|++++.++++++++.+|.++|.+.+++++||+|++|+++|
T Consensus        63 ------~~~~~-----------------~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvG  119 (135)
T d3ddja2          63 ------CSQGD-----------------LYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVG  119 (135)
T ss_dssp             ------CCHHH-----------------HHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             ------hhhhh-----------------ccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEE
Confidence                  00000                 0001123799999999999999999999999999999999999999999999


Q ss_pred             EEeHHHhHHHHH
Q psy15912        453 MITRKDLARYRV  464 (482)
Q Consensus       453 IITr~DLl~~~~  464 (482)
                      +||++|++++..
T Consensus       120 iit~~Dil~~~~  131 (135)
T d3ddja2         120 IVTEREFLLLYK  131 (135)
T ss_dssp             EEEHHHHGGGGG
T ss_pred             EEEHHHHHHHHH
Confidence            999999998753

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=7.2e-17  Score=141.01  Aligned_cols=138  Identities=16%  Similarity=0.183  Sum_probs=106.2

Q ss_pred             chhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q psy15912        214 TARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRK  293 (482)
Q Consensus       214 ~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (482)
                      .+.++|.++++++.+++++.++++.|.+++++.+||+|++                                        
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~----------------------------------------   44 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----------------------------------------   44 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----------------------------------------
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccC----------------------------------------
Confidence            4567899999999999999999999999999999999975                                        


Q ss_pred             CCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCC
Q psy15912        294 ESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNW  373 (482)
Q Consensus       294 ~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~  373 (482)
                         ++++|+|+..|+.+.+..........                                                   
T Consensus        45 ---~~~vGiis~~Dl~~~~~~~~~~~~~~---------------------------------------------------   70 (145)
T d1o50a3          45 ---NKLVGMIPVMHLLKVSGFHFFGFIPK---------------------------------------------------   70 (145)
T ss_dssp             ---TEEEEEEEHHHHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred             ---cceeeeeccchhhhhhhcccccccch---------------------------------------------------
Confidence               69999999999988776542100000                                                   


Q ss_pred             CCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEE
Q psy15912        374 PDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGM  453 (482)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGI  453 (482)
                            ..........              .....++++| .+|+++++++++.+|+++|.+.+.+++||||++|+++|+
T Consensus        71 ------~~~~~~~~~~--------------~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gv  129 (145)
T d1o50a3          71 ------EELIRSSMKR--------------LIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGD  129 (145)
T ss_dssp             ------------CCCC--------------CSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred             ------hHHHHhhhhh--------------ccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEE
Confidence                  0000000000              0112455666 567889999999999999999999999999999999999


Q ss_pred             EeHHHhHHHHHhh
Q psy15912        454 ITRKDLARYRVWR  466 (482)
Q Consensus       454 ITr~DLl~~~~~~  466 (482)
                      ||++|++++....
T Consensus       130 it~~dil~~l~~~  142 (145)
T d1o50a3         130 LNSLEILLALWKG  142 (145)
T ss_dssp             EEHHHHHHHHHHS
T ss_pred             EEHHHHHHHHHhc
Confidence            9999999987544

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=6.4e-17  Score=143.60  Aligned_cols=143  Identities=9%  Similarity=0.064  Sum_probs=110.8

Q ss_pred             ccchhhccc--CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        212 NITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       212 ~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      ..+++|+|.  .++++++.++++.++++.|.++++.++||+|++                                    
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~------------------------------------   55 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK------------------------------------   55 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT------------------------------------
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC------------------------------------
Confidence            458999995  478999999999999999999999999999875                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhcc
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKE  369 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~  369 (482)
                            +++++|+++..|+...+.............                                            
T Consensus        56 ------~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~--------------------------------------------   85 (159)
T d2v8qe2          56 ------KQSFVGMLTITDFINILHRYYKSALVQIYE--------------------------------------------   85 (159)
T ss_dssp             ------TTEEEEEEEHHHHHHHHHHHHHHHTTTCCC--------------------------------------------
T ss_pred             ------CCcEEEEEEHHHHHHHHHhccccccchhhh--------------------------------------------
Confidence                  369999999999988776532100000000                                            


Q ss_pred             CCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CC
Q psy15912        370 NQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NN  448 (482)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g  448 (482)
                                                ... ...........++|.++++++++++++.+|+++|.+.+.+++||+|+ +|
T Consensus        86 --------------------------~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g  138 (159)
T d2v8qe2          86 --------------------------LEE-HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESG  138 (159)
T ss_dssp             --------------------------GGG-CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTC
T ss_pred             --------------------------hhh-hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCC
Confidence                                      000 00001123567789999999999999999999999999999999984 68


Q ss_pred             eEEEEEeHHHhHHHHHhhc
Q psy15912        449 HVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~~~~  467 (482)
                      +++||||++|++++...+.
T Consensus       139 ~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2         139 NTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             CEEEEECHHHHHHHHHHHS
T ss_pred             eEEEEEeHHHHHHHHHHHc
Confidence            9999999999999876554

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=5.9e-16  Score=136.77  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=105.9

Q ss_pred             hhhccc---CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        215 ARIVKS---HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       215 a~dvM~---~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ++++|.   ++++++.+++++.++++.|.+++++.+||+|++                                      
T Consensus         3 l~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~--------------------------------------   44 (153)
T d2ooxe2           3 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE--------------------------------------   44 (153)
T ss_dssp             GGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG--------------------------------------
T ss_pred             HHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc--------------------------------------
Confidence            445543   489999999999999999999999999999975                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCC
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQ  371 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~  371 (482)
                           ++++|+++..|+.+.+........                                                   
T Consensus        45 -----~~~vG~it~~Dl~~~~~~~~~~~~---------------------------------------------------   68 (153)
T d2ooxe2          45 -----GTLLNVYESVDVMHLIQDGDYSNL---------------------------------------------------   68 (153)
T ss_dssp             -----GBEEEEEEHHHHHHHHGGGCGGGG---------------------------------------------------
T ss_pred             -----ceEEEEEEeeeeeehhcccccccc---------------------------------------------------
Confidence                 689999999999877654310000                                                   


Q ss_pred             CCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEE
Q psy15912        372 NWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVV  451 (482)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lv  451 (482)
                           ...                       ....+...+.+..+++++++++++.+++++|.+.+.+++||||++|+++
T Consensus        69 -----~~~-----------------------v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lv  120 (153)
T d2ooxe2          69 -----DLS-----------------------VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLE  120 (153)
T ss_dssp             -----GSB-----------------------HHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEE
T ss_pred             -----ccc-----------------------hhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEE
Confidence                 000                       0011234455667788999999999999999999999999999999999


Q ss_pred             EEEeHHHhHHHHHhhccccc
Q psy15912        452 GMITRKDLARYRVWRHGGRM  471 (482)
Q Consensus       452 GIITr~DLl~~~~~~~~~~~  471 (482)
                      ||||++|++++..+......
T Consensus       121 GivT~~Dil~~~~~~~~~~~  140 (153)
T d2ooxe2         121 GILSLADILNYIIYDKTTTP  140 (153)
T ss_dssp             EEEEHHHHHHHHHSCTTCCS
T ss_pred             EEEEHHHHHHHHHcCccccC
Confidence            99999999999776544433

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.65  E-value=2.2e-16  Score=142.83  Aligned_cols=155  Identities=14%  Similarity=0.112  Sum_probs=114.4

Q ss_pred             ccccchhhccc--CCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCC
Q psy15912        210 SSNITARIVKS--HPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHK  287 (482)
Q Consensus       210 l~~l~a~dvM~--~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (482)
                      +...++.|+|.  .+++++.++.++.++++.|.+++++++||+|++                                  
T Consensus        17 l~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~----------------------------------   62 (179)
T d2ooxe1          17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE----------------------------------   62 (179)
T ss_dssp             HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT----------------------------------
T ss_pred             HcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC----------------------------------
Confidence            45668999997  479999999999999999999999999999975                                  


Q ss_pred             CCCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhh
Q psy15912        288 GDASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIY  367 (482)
Q Consensus       288 ~~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~  367 (482)
                              .++++|+++..|+...+.........  +..  .....                                  
T Consensus        63 --------~~~~vGiis~~Di~~~l~~~~~~~~~--~~~--~~~~~----------------------------------   96 (179)
T d2ooxe1          63 --------ANKFAGLLTMADFVNVIKYYYQSSSF--PEA--IAEID----------------------------------   96 (179)
T ss_dssp             --------TTEEEEEECHHHHHHHHHHHHHHCSC--GGG--GGGGG----------------------------------
T ss_pred             --------CCeeEEEEeechHHHHHHhccccccc--hhh--hhhhh----------------------------------
Confidence                    36999999999999877543210000  000  00000                                  


Q ss_pred             ccCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCC
Q psy15912        368 KENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNN  447 (482)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~  447 (482)
                               ......                    .........+|.++++++++++++.+|.++|.+.+.+++||+|++
T Consensus        97 ---------~~~~~~--------------------~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~  147 (179)
T d2ooxe1          97 ---------KFRLLG--------------------LREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD  147 (179)
T ss_dssp             ---------GSBHHH--------------------HHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEEC
T ss_pred             ---------ccchhh--------------------hcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecC
Confidence                     000000                    001123556788999999999999999999999999999999865


Q ss_pred             C-----eEEEEEeHHHhHHHHHhhccccccc
Q psy15912        448 N-----HVVGMITRKDLARYRVWRHGGRMGL  473 (482)
Q Consensus       448 g-----~lvGIITr~DLl~~~~~~~~~~~~~  473 (482)
                      |     +++||||++||+++...+..+..++
T Consensus       148 g~~~~~~vvgiiT~~dIlk~l~~~~~~~~~l  178 (179)
T d2ooxe1         148 GETGSEMIVSVLTQYRILKFISMNCKETAML  178 (179)
T ss_dssp             TTTCCEEEEEEEEHHHHHHHHHTTCGGGGGC
T ss_pred             CCcCCCcEEEEEeHHHHHHHHHHhhhHhhcc
Confidence            4     7999999999999977666554433

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3.4e-16  Score=136.17  Aligned_cols=126  Identities=18%  Similarity=0.279  Sum_probs=98.1

Q ss_pred             hcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCC
Q psy15912        217 IVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESP  296 (482)
Q Consensus       217 dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (482)
                      .+|.++++++.+++++.++++.|.+++++.+||+|++                                           
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-------------------------------------------   49 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-------------------------------------------   49 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------------------------------------
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-------------------------------------------
Confidence            4678899999999999999999999999999999975                                           


Q ss_pred             CeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCC
Q psy15912        297 GRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDD  376 (482)
Q Consensus       297 g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~  376 (482)
                      ++++|+++..|+.+.+........                                                        
T Consensus        50 ~~~vG~it~~Di~~~~~~~~~~~~--------------------------------------------------------   73 (140)
T d2nyca1          50 GYLINVYEAYDVLGLIKGGIYNDL--------------------------------------------------------   73 (140)
T ss_dssp             CBEEEEEEHHHHHHHHHTC----C--------------------------------------------------------
T ss_pred             CeEcceehhhHHHHHHhhcccccc--------------------------------------------------------
Confidence            689999999999887754310000                                                        


Q ss_pred             CCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Q psy15912        377 QLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR  456 (482)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr  456 (482)
                                             .......+.....+..+++++++++++.++.++|.+.+.+++||||++|+++|+||+
T Consensus        74 -----------------------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~  130 (140)
T d2nyca1          74 -----------------------SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTL  130 (140)
T ss_dssp             -----------------------CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred             -----------------------ccchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEH
Confidence                                   000001113344566778899999999999999999999999999999999999999


Q ss_pred             HHhHHHHH
Q psy15912        457 KDLARYRV  464 (482)
Q Consensus       457 ~DLl~~~~  464 (482)
                      +|++++..
T Consensus       131 ~Dii~~l~  138 (140)
T d2nyca1         131 SDILKYIL  138 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999854

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.1e-16  Score=137.14  Aligned_cols=134  Identities=16%  Similarity=0.234  Sum_probs=106.4

Q ss_pred             ccchhhcc---cCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        212 NITARIVK---SHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       212 ~l~a~dvM---~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      .-+++|++   .++++++.+++++.++++.|.+++++++||+|++                                   
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-----------------------------------   52 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----------------------------------   52 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------------------------------
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-----------------------------------
Confidence            34777774   3579999999999999999999999999999975                                   


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhc
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYK  368 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~  368 (482)
                              ++++|+++..|+...+.......                                                 
T Consensus        53 --------~~~~Gvit~~di~~~l~~~~~~~-------------------------------------------------   75 (145)
T d2v8qe1          53 --------GRVVDIYSKFDVINLAAEKTYNN-------------------------------------------------   75 (145)
T ss_dssp             --------SBEEEEEEGGGTGGGGGSSCCCC-------------------------------------------------
T ss_pred             --------CceEEEEEcchhhhhhhcccccc-------------------------------------------------
Confidence                    69999999999865443210000                                                 


Q ss_pred             cCCCCCCCCCChhhhhhhCCCCCCCCccccCccccccccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCC
Q psy15912        369 ENQNWPDDQLSSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNN  448 (482)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g  448 (482)
                               .+                     ............|.++++++++++++.+++++|.+.+.+++||+|++|
T Consensus        76 ---------~~---------------------~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g  125 (145)
T d2v8qe1          76 ---------LD---------------------VSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD  125 (145)
T ss_dssp             ---------CS---------------------SBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             ---------hh---------------------hhhhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCC
Confidence                     00                     000011245667888999999999999999999999999999999999


Q ss_pred             eEEEEEeHHHhHHHHHhhc
Q psy15912        449 HVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       449 ~lvGIITr~DLl~~~~~~~  467 (482)
                      +++|+||++||+++.....
T Consensus       126 ~l~GiVt~~dii~~lv~~~  144 (145)
T d2v8qe1         126 VVKGIVSLSDILQALVLTG  144 (145)
T ss_dssp             BEEEEEEHHHHHHHHHSSC
T ss_pred             EEEEEEEHHHHHHHHHhcC
Confidence            9999999999999877543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.64  E-value=7.6e-18  Score=143.31  Aligned_cols=116  Identities=21%  Similarity=0.306  Sum_probs=61.5

Q ss_pred             ccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCe
Q psy15912        219 KSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDASRKESPGR  298 (482)
Q Consensus       219 M~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  298 (482)
                      |.++++++.|++++.+++++|++++++++||+|++.                                        .+++
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~----------------------------------------~~~~   41 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGR----------------------------------------MGSR   41 (120)
T ss_dssp             EECTTCC----CCCC--CCBC-------------------------------------------------------CTTC
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccc----------------------------------------cCCe
Confidence            667778999999999999999999999999998641                                        1369


Q ss_pred             EEEEEeHHHHHHHHHhhhhccCCCCCCccchhhhhhhccccccccCCCCccccchhhHHHHHHHHhhhhccCCCCCCCCC
Q psy15912        299 LVGLILRSQLIILIKHKIYKENQNWPDDQLSSEIFHAEYRCRPRIWSPGRLVGLILRSQLIILIKHKIYKENQNWPDDQL  378 (482)
Q Consensus       299 lvGiIs~~dL~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~  378 (482)
                      ++|+||.+|+........                                                              
T Consensus        42 lvGivT~~Di~~~~~~~~--------------------------------------------------------------   59 (120)
T d1jr1a4          42 LVGIISSRDIDFLKEEEH--------------------------------------------------------------   59 (120)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             Eeeeeeeeeeeehhcccc--------------------------------------------------------------
Confidence            999999999743221110                                                              


Q ss_pred             ChhhhhhhCCCCCCCCccccCccccccccccccc--cccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Q psy15912        379 SSEIFHAEYPRYPSVNDLVVSENDRSFTVKLNLF--MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITR  456 (482)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~i--m~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr  456 (482)
                                                 ...+..+  |.++++++++++++.+|.++|.+.+++++||||++|+++||||+
T Consensus        60 ---------------------------~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~  112 (120)
T d1jr1a4          60 ---------------------------DRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIAR  112 (120)
T ss_dssp             ---------------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECH
T ss_pred             ---------------------------CceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEH
Confidence                                       0022223  44567899999999999999999999999999999999999999


Q ss_pred             HHhHHHH
Q psy15912        457 KDLARYR  463 (482)
Q Consensus       457 ~DLl~~~  463 (482)
                      +|+++..
T Consensus       113 ~Di~k~~  119 (120)
T d1jr1a4         113 TDLKKNR  119 (120)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhcc
Confidence            9999753

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.81  E-value=3.9e-09  Score=90.56  Aligned_cols=60  Identities=25%  Similarity=0.480  Sum_probs=56.2

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      +.++++|++++.++++++++.+|.++|.+.+.+++||+|++|+++|+||.+|++++....
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~   61 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESS   61 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhh
Confidence            378999999999999999999999999999999999999999999999999999876554

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=6.5e-09  Score=90.51  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=53.7

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      ++++++|+++++++.+++++.+|.++|++.+++++||+|++|+++|+||.+|+++.
T Consensus         4 ~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~   59 (156)
T d2yzqa1           4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRD   59 (156)
T ss_dssp             CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGC
T ss_pred             CCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhh
Confidence            58999999999999999999999999999999999999999999999999999864

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=1e-08  Score=87.16  Aligned_cols=58  Identities=26%  Similarity=0.491  Sum_probs=54.8

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      ..+|+++|++++.++++++++.+|.+.|.+.+++++||+|++|+++|+||.+|+++..
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~   61 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRV   61 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHH
Confidence            3489999999999999999999999999999999999999999999999999999754

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=1.3e-08  Score=85.37  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=52.7

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .++++|+++++++.+++++.+|.++|.+.+++++||+|++|+++|+||.+|+++..
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~   57 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG   57 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTT
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhh
Confidence            57899999999999999999999999999999999999999999999999998653

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.61  E-value=2.4e-08  Score=85.70  Aligned_cols=60  Identities=18%  Similarity=0.292  Sum_probs=55.6

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhc
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRH  467 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~  467 (482)
                      ++.++|+++|+++++++++.+|.+.|.+.+.+++||+|++|+++|+||.+|++++.....
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~   64 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF   64 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccc
Confidence            688899999999999999999999999999999999999999999999999998755443

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=2.9e-08  Score=82.88  Aligned_cols=55  Identities=16%  Similarity=0.334  Sum_probs=52.9

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARY  462 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~  462 (482)
                      +++++|+++++++++++++.+|.++|++.+.+++||+|++|+++|+||.+|++++
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~   56 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL   56 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh
Confidence            6889999999999999999999999999999999999999999999999999865

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.58  E-value=5e-08  Score=83.80  Aligned_cols=58  Identities=19%  Similarity=0.312  Sum_probs=54.7

Q ss_pred             cccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        407 VKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       407 i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +.|+++|++++.++++++++.+|.+.|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~   60 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI   60 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhh
Confidence            5799999999999999999999999999999999999999999999999999987643

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.57  E-value=1.1e-08  Score=85.75  Aligned_cols=57  Identities=21%  Similarity=0.382  Sum_probs=38.8

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++++|+++|+++++++++.+|.++|.+.+.+++||+|++|+++|+||.+|++....
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~   58 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD   58 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc
Confidence            688999999999999999999999999999999999999999999999999997643

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.56  E-value=8.1e-08  Score=80.70  Aligned_cols=68  Identities=25%  Similarity=0.339  Sum_probs=59.3

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhhcccccccccc
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWRHGGRMGLEEL  476 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~~~~~~~~~~~  476 (482)
                      .|+++|+++++++++++++.+|.++|++.+.+++||+| +|+++|+||++|+++....+......++++
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~   72 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEF   72 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGT
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccccchhhhh
Confidence            68999999999999999999999999999999999997 589999999999998766555444555554

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.52  E-value=6.7e-08  Score=82.39  Aligned_cols=57  Identities=25%  Similarity=0.438  Sum_probs=54.5

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      +|+++|++.+++|++++|+.+|.++|.+.+.+++||+|++++++|++|.+|+++...
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~   59 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA   59 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhh
Confidence            799999999999999999999999999999999999999999999999999987754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.49  E-value=8.9e-08  Score=79.67  Aligned_cols=57  Identities=21%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             cccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        409 LNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       409 v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      |+++|+++++++++++++.+|.+.|.+.+.+++||+| +|+++|+||++|++++....
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~   58 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEG   58 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHT
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccc
Confidence            6889999999999999999999999999999999997 58999999999999875543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.48  E-value=9.3e-08  Score=80.26  Aligned_cols=51  Identities=22%  Similarity=0.387  Sum_probs=47.0

Q ss_pred             cccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC--CCeEEEEEeHHHhHHHH
Q psy15912        413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN--NNHVVGMITRKDLARYR  463 (482)
Q Consensus       413 m~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~--~g~lvGIITr~DLl~~~  463 (482)
                      |.++|+++++++++.+|.++|.+.+++++||||+  +++++|+||++|+.+..
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~   55 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS   55 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh
Confidence            5678999999999999999999999999999986  78999999999998753

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.48  E-value=1.3e-07  Score=79.53  Aligned_cols=59  Identities=15%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHhHHHHHhh
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVV--NNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVV--D~~g~lvGIITr~DLl~~~~~~  466 (482)
                      +|+++|+++|+++++++++.+|.+.|++.+..++||+  |++++++|++|..|++++....
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~   62 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR   62 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccc
Confidence            6899999999999999999999999999999999999  5668999999999999875443

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=8.4e-08  Score=81.13  Aligned_cols=57  Identities=16%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             ccccccc--cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMN--TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~--~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++++|.  ....++++++++++|.++|.+.+++++||+|++|+++|+||++|++++..
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~   61 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   61 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhh
Confidence            6788984  56789999999999999999999999999999999999999999998764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.43  E-value=1.5e-07  Score=79.28  Aligned_cols=61  Identities=13%  Similarity=0.287  Sum_probs=56.5

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++|+|.+++.++++++++.++.++|.+++.+.+||||++                                      
T Consensus        64 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~--------------------------------------  105 (127)
T d2ouxa2          64 DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD--------------------------------------  105 (127)
T ss_dssp             TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--------------------------------------
T ss_pred             cEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCC--------------------------------------
Confidence            467999999999999999999999999999999999999875                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                           |+++|+||.+|++.++.++
T Consensus       106 -----g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2         106 -----DHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             -----CBEEEEEEHHHHHHHHHHH
T ss_pred             -----CEEEEEEEHHHHHHHHHHH
Confidence                 7999999999999988654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.42  E-value=2.4e-07  Score=80.13  Aligned_cols=60  Identities=15%  Similarity=0.291  Sum_probs=55.1

Q ss_pred             ccccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC--CCeEEEEEeHHHhHHHHHh
Q psy15912        406 TVKLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN--NNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       406 ~i~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~--~g~lvGIITr~DLl~~~~~  465 (482)
                      .+.++++|+++++++++++++.+|.++|++.+.+++||+|+  ++.++|++|+.|++++...
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~   71 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR   71 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhh
Confidence            46899999999999999999999999999999999999984  4789999999999987544

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=3.6e-07  Score=77.84  Aligned_cols=59  Identities=15%  Similarity=0.174  Sum_probs=53.0

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHhh
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVWR  466 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~~  466 (482)
                      ++..+|..+..++.+++++.+|++.|.+.+.+++||+|++|+++|+||++|+++....+
T Consensus        10 ~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~   68 (140)
T d2nyca1          10 DLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGG   68 (140)
T ss_dssp             GSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC
T ss_pred             HhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhc
Confidence            45557888999999999999999999999999999999999999999999999875433

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.27  E-value=4.3e-07  Score=76.13  Aligned_cols=56  Identities=14%  Similarity=0.335  Sum_probs=50.0

Q ss_pred             ccccccc---cCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMN---TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~---~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      .++++|+   ++.+++++++++.+|.++|.+.+++++||+| +|+++|+||++|+++...
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~   61 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSY   61 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGG
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhh
Confidence            4777886   4789999999999999999999999999997 789999999999987643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.21  E-value=1.1e-06  Score=75.96  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             cccccc---ccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFM---NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im---~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~  464 (482)
                      |+++++   .++++++.+++++.+|.++|.+.+++++||+|++|+++|+||++|+++...
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~   61 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ   61 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHG
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhc
Confidence            455554   347899999999999999999999999999999999999999999987654

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=1.3e-06  Score=74.92  Aligned_cols=61  Identities=18%  Similarity=0.355  Sum_probs=56.4

Q ss_pred             ccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q psy15912        212 NITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGDAS  291 (482)
Q Consensus       212 ~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (482)
                      ..+++++|++++.++++++++.++++.|.+++.+.+||||++                                      
T Consensus        64 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~--------------------------------------  105 (144)
T d2yvxa2          64 RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE--------------------------------------  105 (144)
T ss_dssp             TCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSS--------------------------------------
T ss_pred             ccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeEC--------------------------------------
Confidence            457889999999999999999999999999999999999976                                      


Q ss_pred             CCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        292 RKESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       292 ~~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                           |+++|+|+.+|+++++...
T Consensus       106 -----g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2         106 -----GRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             -----CBEEEEEEHHHHHHHHHHH
T ss_pred             -----CEEEEEEEHHHHHHHHHHH
Confidence                 7999999999999988765

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.09  E-value=9.6e-07  Score=74.39  Aligned_cols=62  Identities=15%  Similarity=0.273  Sum_probs=56.5

Q ss_pred             ccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCC
Q psy15912        210 SSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKGD  289 (482)
Q Consensus       210 l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (482)
                      +...+++++|++++.++++++++.++++.|.+++.+.+||+|++                                    
T Consensus        71 ~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~------------------------------------  114 (135)
T d3ddja2          71 ISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN------------------------------------  114 (135)
T ss_dssp             HHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT------------------------------------
T ss_pred             cccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCC------------------------------------
Confidence            34678999999999999999999999999999999999999976                                    


Q ss_pred             CCCCCCCCeEEEEEeHHHHHHHHHh
Q psy15912        290 ASRKESPGRLVGLILRSQLIILIKH  314 (482)
Q Consensus       290 ~~~~~~~g~lvGiIs~~dL~~~l~~  314 (482)
                             |+++|+|+.+|+++++.+
T Consensus       115 -------g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2         115 -------DKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             -------SCEEEEEEHHHHGGGGGG
T ss_pred             -------CEEEEEEEHHHHHHHHHH
Confidence                   799999999999887654

>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Clc chloride channel
superfamily: Clc chloride channel
family: Clc chloride channel
domain: Clc chloride channel
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=3e-06  Score=86.08  Aligned_cols=122  Identities=16%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             cccccCCCchhhhhhhcccccccc----CCCc--ccccccCCCCcceehHHHHHHHHHHHHHHHHHHHhcCCCCCCchhH
Q psy15912         61 GVSVSGGGMPEKYDFLSKDNVWKS----NGKP--RSLSEQLSDSGGVFIPCLLTGAAWGRLFSLFLQSIFPEATWIDPGK  134 (482)
Q Consensus        61 ~~~~~g~G~~~~~~~l~~~~~~~~----~~~~--~~~~~~~G~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~  134 (482)
                      .-...|.|-+.+...++++-.+..    ..|+  +.+|+++|+|.|...|+..+||++|..++..+..    ........
T Consensus        85 ~p~~~GsGipev~~~l~~~~~~~~~r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~~~~~----~~~~~~r~  160 (444)
T d1otsa_          85 APEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRL----KGDEARHT  160 (444)
T ss_dssp             CGGGSSCSHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTC----CSHHHHHH
T ss_pred             CCccCCCCHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHHhh----hhHHhhHH
Confidence            345567788889899987744332    2444  8999999999999999999999999999976421    11012356


Q ss_pred             HHHHHHHHHhhhhhchhHHHHHHHHHhhC-Cc----hhhHHHHHHHHHHHHHhhhcC
Q psy15912        135 YALIGAAAQLGGVVRMTISLTIILIEATG-NI----SFGLPLMLTLITAKWIGDFFT  186 (482)
Q Consensus       135 ~a~vG~aa~~~g~~~~p~s~~vi~~Eltg-~~----~~~~Pl~ia~~ia~~v~~~~~  186 (482)
                      +..+|+||-++++.++|++.+++.+|... .+    ..+.|.+++++.++.+...+.
T Consensus       161 l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  217 (444)
T d1otsa_         161 LLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN  217 (444)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhhheeecc
Confidence            78999999999999999999999999654 22    337889999988888877653

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=3.4e-06  Score=71.87  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             ccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHHHh
Q psy15912        414 NTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       414 ~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~~~  465 (482)
                      .+++++|++++++.+|+++|.+.+.+++||+|++|+++|+||++|+++....
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~   70 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE   70 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGS
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhc
Confidence            4578899999999999999999999999999999999999999999876543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.99  E-value=1.2e-07  Score=79.05  Aligned_cols=50  Identities=18%  Similarity=0.365  Sum_probs=18.1

Q ss_pred             cccCceeeeCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHhHHH
Q psy15912        413 MNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN---NNHVVGMITRKDLARY  462 (482)
Q Consensus       413 m~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~---~g~lvGIITr~DLl~~  462 (482)
                      |.++|+++++++++.+|.++|++.+++++||+|+   +|+++||||.+|+...
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~   54 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL   54 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC-----------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeeh
Confidence            6688999999999999999999999999999985   6799999999998643

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=9.8e-06  Score=69.86  Aligned_cols=58  Identities=16%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             ccccccc--cCceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHhHHHHHh
Q psy15912        408 KLNLFMN--TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLARYRVW  465 (482)
Q Consensus       408 ~v~~im~--~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g~lvGIITr~DLl~~~~~  465 (482)
                      .+.++|.  ..++++..++++.+|++.|.+++++++||+|+ +++++|+||.+|++....+
T Consensus        14 t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~   74 (159)
T d2v8qe2          14 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHR   74 (159)
T ss_dssp             BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHH
T ss_pred             EEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHh
Confidence            6788884  35688999999999999999999999999975 6899999999999887544

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.86  E-value=6.8e-06  Score=72.37  Aligned_cols=57  Identities=9%  Similarity=0.058  Sum_probs=50.6

Q ss_pred             ccccccc--cCceeeeCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHhHHHHH
Q psy15912        408 KLNLFMN--TSPFSVQDSTSLPRVFKLFRALGLRHVVVVNN-NNHVVGMITRKDLARYRV  464 (482)
Q Consensus       408 ~v~~im~--~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~-~g~lvGIITr~DLl~~~~  464 (482)
                      .+.++|.  ...+++++++|+.+|++.|.+.+++++||+|+ +++++|+||.+|+++...
T Consensus        21 ~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1          21 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             BHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             EeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            5778886  45689999999999999999999999999985 579999999999998643

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.8e-05  Score=69.15  Aligned_cols=63  Identities=14%  Similarity=0.293  Sum_probs=56.6

Q ss_pred             CccccchhhcccCCeeEecCCCCHHHHHHHHHhCCCCeeeEecCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCC
Q psy15912        209 LSSNITARIVKSHPVICLRPLETVGNIIDVLKATSHNGFPIVDVEPMTKHSSDGAEQSSAGSTDSHKGDTSHKRDSSHKG  288 (482)
Q Consensus       209 ~l~~l~a~dvM~~~~~~l~~~~~i~~~~~~l~~~~~~~fPVVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (482)
                      .....+++++|.+++.++.+++++.++.++|.+++.+.+||+|+                                    
T Consensus        96 ~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~------------------------------------  139 (169)
T d2j9la1          96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN------------------------------------  139 (169)
T ss_dssp             CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET------------------------------------
T ss_pred             cccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC------------------------------------
Confidence            34467799999999999999999999999999999999999874                                    


Q ss_pred             CCCCCCCCCeEEEEEeHHHHHHHHHhh
Q psy15912        289 DASRKESPGRLVGLILRSQLIILIKHK  315 (482)
Q Consensus       289 ~~~~~~~~g~lvGiIs~~dL~~~l~~~  315 (482)
                              |+++|+|+++|+++++.+.
T Consensus       140 --------g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1         140 --------GRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             --------TEEEEEEEHHHHHHHHHHH
T ss_pred             --------CEEEEEEEHHHHHHHHHHH
Confidence                    5999999999999988764

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=84.98  E-value=0.0071  Score=53.75  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=51.6

Q ss_pred             ccccccccCceeeeCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHhHHHH
Q psy15912        408 KLNLFMNTSPFSVQDSTSLPRVFKLFRALGLRHVVVVNNNNHVVGMITRKDLARYR  463 (482)
Q Consensus       408 ~v~~im~~~p~~V~~~~~l~~a~~~f~~~~lr~lpVVD~~g~lvGIITr~DLl~~~  463 (482)
                      .++++|.....++..+++-+.+.++|..++.+..||+|++++.+|.||.+|+..++
T Consensus       138 ~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~  193 (213)
T d1lkvx_         138 VLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQ  193 (213)
T ss_dssp             HHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             HHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHH
Confidence            57888988889999999999999999999999999999999999999999986653