Psyllid ID: psy15918

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MKVTKFEDPASPVQRYNDFRVSQEDFRRSHTPELLHQNPRSPHQTMLSLTSCSDNDLSDVDHEYMSDVDVTGDVDVTGDASPLDCSNKKSSEDNNASSEESKANEEGKPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSAVFGAAAAGIYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLPAHGGAFSMERLLADPATFRPNFVQTSPILYQMMNNLRDSHNQAMRESQQNSQPCRMTSPASSCSSSPEPIIRQNLYRPEAVLARPPS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccc
ccccccccccccccHcccHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHccccHHHcHHccccccccEEEEcccccccccccEEEEccccccccccccHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccc
mkvtkfedpaspvqryndfrvsqedfrrshtpellhqnprsphqtmlsltscsdndlsdvdheymsdvdvtgdvdvtgdaspldcsnkkssednnasseeskaneegkpkeckkdekppysYNALIMMAIRQSPEKRLTLNGIYEYIMTnfpyyktnkqgwqnsirhnlslnkcfvkvprhyddpgkgnywmldassedvfiggttgklrrRTTAASRSRLAAFKRSAVFgaaaagiyppgfiptatpgsypppswalqqlycnplyrynpyaypglqaaaipkptplpahggafsmerlladpatfrpnfvqtsPILYQMMNNLRDSHNQAMResqqnsqpcrmtspasscssspepiirqnlyrpeavlarpps
mkvtkfedpaspvqryndfrvsqEDFRRShtpellhqnprsphQTMLSLTSCSDNDLSDVDHEYMSDVDVTGDVDVTGdaspldcsnkkssednnasseeskaneegkpkeckkdekpPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSAVFGAAAAGIYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLPAHGGAFSMERLLADPATFRPNFVQTSPILYQMMNNLRDSHNQAMRESQQNSQPCRmtspasscssspepiirqnlyrpeavlarpps
MKVTKFEDPASPVQRYNDFRVSQEDFRRSHTPELLHQNPRSPHQTMLSLTSCSDNDLSDVDHEYMSdvdvtgdvdvtgdASPLDCsnkkssednnasseeskaneegkpkeckkdekppYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIggttgklrrrttaasrsrlaaFKRSAVFGAAAAGIYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLPAHGGAFSMERLLADPATFRPNFVQTSPILYQMMNNLRDSHNQAMRESQQNSQPCRMTspasscssspepIIRQNLYRPEAVLARPPS
************************************************************************************************************************SYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSAVFGAAAAGIYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLPAHGGAFSMERLLADPATFRPNFVQTSPILYQM*******************************************************
*************************************************************************************************************************YNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTT**************************************************************************************************************************************************************************
**********SPVQRYNDFRVSQEDFRRSHTPELLHQNPRSPHQTMLSLTSCSDNDLSDVDHEYMSDVDVTGDVDVTGDASP*********************************EKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGK***********RLAAFKRSAVFGAAAAGIYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLPAHGGAFSMERLLADPATFRPNFVQTSPILYQMMNNLRDSH***************************EPIIRQNLYRPE********
**********SPVQRYND***SQ*D**RSH*********************************************************************************CKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRS******************************************************YPGLQAAAIPKPTPLPAHGGAFSMERLLADPATFRPNFVQTSPILYQMMNNLRDSHNQAMRESQQNSQPCRMTSPASSCSSSPEPIIRQNLYRPEAVLARP**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKVTKFEDPASPVQRYNDFRVSQEDFRRSHTPELLHQNPRSPHQTMLSLTSCSDNDLSDVDHEYMSDVDVTGDVDVTGDASPLDCSNKKSSEDNNASSEESKANEEGKPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSAVFGAAAAGIYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNPYAYPGLQAAAIPKPTPLPAHGGAFSMERLLADPATFRPNFVQTSPILYQMMNNLRDSHNQAMRESQQNSQPCRMTSPASSCSSSPEPIIRQNLYRPEAVLARPPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
P32031445 Fork head domain transcri no N/A 0.531 0.449 0.594 7e-62
Q90964451 Forkhead box protein G1 O yes N/A 0.324 0.270 0.833 3e-55
Q60987481 Forkhead box protein G1 O yes N/A 0.300 0.234 0.869 3e-54
Q00939480 Forkhead box protein G1 O yes N/A 0.300 0.235 0.869 3e-54
Q9YHC5436 Forkhead box protein G1 O N/A N/A 0.300 0.259 0.869 3e-54
Q1A1A2488 Forkhead box protein G1 O N/A N/A 0.295 0.227 0.876 5e-54
Q1A1A1486 Forkhead box protein G1 O N/A N/A 0.295 0.228 0.876 5e-54
P56260387 Transforming protein Qin N/A N/A 0.324 0.315 0.825 5e-54
Q1A1A6489 Forkhead box protein G1 O N/A N/A 0.295 0.226 0.876 5e-54
Q1A1A4484 Forkhead box protein G1 O N/A N/A 0.295 0.229 0.876 6e-54
>sp|P32031|SLP2_DROME Fork head domain transcription factor slp2 OS=Drosophila melanogaster GN=slp2 PE=2 SV=2 Back     alignment and function desciption
 Score =  238 bits (606), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 139/234 (59%), Positives = 156/234 (66%), Gaps = 34/234 (14%)

Query: 61  DHEYMSDVDVTGDVDVTGDASPLDCSNKKSSE-----------------DNNASSEESKA 103
           DHE  SD +   D+DVT   SP   +N   S+                 +      E+K+
Sbjct: 110 DHEAESDPE--SDLDVTS-MSPAPVANPNESDPDEVDEEFVEEDIECDGETTDGDAENKS 166

Query: 104 NEEGKP-KECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQ 162
           N+ GKP K+ K +EKPPYSYNALIMMAIRQS EKRLTLNGIYEYIMTN PYY+ NKQGWQ
Sbjct: 167 ND-GKPVKDKKGNEKPPYSYNALIMMAIRQSSEKRLTLNGIYEYIMTNHPYYRDNKQGWQ 225

Query: 163 NSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLA 222
           NSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLD S+EDVFIGG+TGKLRRRTTAASRSRLA
Sbjct: 226 NSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGGSTGKLRRRTTAASRSRLA 285

Query: 223 AFKRSAVFGAAAAGIYPPGFIPTATPG---SYPPPSWALQQLYCNPLYRYNPYA 273
           AFKRS +      G   PG       G   +YPP       L  +   RYNP+A
Sbjct: 286 AFKRSLI------GPMFPGLAAYPQFGQFLTYPP---TAPSLLASMYQRYNPFA 330
Transcription factor involved in segmentation. May function primarily as a segment polarity gene. Different levels of slp activity seem to be required in different segments.
Drosophila melanogaster (taxid: 7227)
>sp|Q90964|FOXG1_CHICK Forkhead box protein G1 OS=Gallus gallus GN=FOXG1 PE=2 SV=1 Back     alignment and function description
>sp|Q60987|FOXG1_MOUSE Forkhead box protein G1 OS=Mus musculus GN=Foxg1 PE=2 SV=1 Back     alignment and function description
>sp|Q00939|FOXG1_RAT Forkhead box protein G1 OS=Rattus norvegicus GN=Foxg1 PE=2 SV=1 Back     alignment and function description
>sp|Q9YHC5|FOXG1_XENLA Forkhead box protein G1 OS=Xenopus laevis GN=foxg1 PE=2 SV=1 Back     alignment and function description
>sp|Q1A1A2|FOXG1_EQUBU Forkhead box protein G1 OS=Equus burchelli GN=FOXG1 PE=3 SV=1 Back     alignment and function description
>sp|Q1A1A1|FOXG1_CERSI Forkhead box protein G1 OS=Ceratotherium simum GN=FOXG1 PE=3 SV=1 Back     alignment and function description
>sp|P56260|QIN_AVIS3 Transforming protein Qin OS=Avian sarcoma virus (strain 31) GN=V-QIN PE=2 SV=1 Back     alignment and function description
>sp|Q1A1A6|FOXG1_CEBCA Forkhead box protein G1 OS=Cebus capucinus GN=FOXG1 PE=3 SV=1 Back     alignment and function description
>sp|Q1A1A4|FOXG1_PIPRU Forkhead box protein G1 OS=Pipistrellus rusticus GN=FOXG1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
242022160462 Forkhead box protein E1, putative [Pedic 0.643 0.523 0.640 8e-82
380021495427 PREDICTED: fork head domain transcriptio 0.779 0.686 0.497 9e-76
383861136426 PREDICTED: uncharacterized protein LOC10 0.779 0.687 0.509 2e-73
328787799427 PREDICTED: hypothetical protein LOC72474 0.771 0.679 0.509 4e-72
340712557426 PREDICTED: fork head domain transcriptio 0.723 0.638 0.534 5e-72
345481290424 PREDICTED: hypothetical protein LOC10011 0.601 0.533 0.557 2e-71
332018620421 Fork head domain transcription factor sl 0.643 0.574 0.577 1e-70
307186112412 Fork head domain transcription factor sl 0.755 0.689 0.507 7e-70
170072730401 fork head domain transcription factor sl 0.606 0.568 0.611 9e-69
157125013375 forkhead protein/ forkhead protein domai 0.603 0.605 0.588 3e-68
>gi|242022160|ref|XP_002431509.1| Forkhead box protein E1, putative [Pediculus humanus corporis] gi|212516803|gb|EEB18771.1| Forkhead box protein E1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 171/267 (64%), Positives = 189/267 (70%), Gaps = 25/267 (9%)

Query: 66  SDVDVTGDVDVTGDASPLDCSNKKSSEDNNASSEESKANEEGKPKECKKDEK-------- 117
           SD+DVTG     G   PLDCSN+ SS+    +  E   +E     E +KD+K        
Sbjct: 100 SDLDVTGG----GTPPPLDCSNRNSSQ----TEAELDESEVLAKIESEKDDKNGEKKKNE 151

Query: 118 -PPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
            PPYSYNALIMMAIRQSPEKRLTLNGIYE+IM NFPYY+ NKQGWQNSIRHNLSLNKCFV
Sbjct: 152 KPPYSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFV 211

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRRTTAASRSRLAAFKRSAVFGAAAAG 236
           KVPRHYDDPGKGNYWMLD SSEDVFIGGTTGKLRRR+TAASRSRLAAFKR+ V G AAAG
Sbjct: 212 KVPRHYDDPGKGNYWMLDPSSEDVFIGGTTGKLRRRSTAASRSRLAAFKRTVVLG-AAAG 270

Query: 237 IYPPGFIPTATPGSYPPPSWALQQLYCNPLYRYNP-YAYPGLQAAAIPKPTPLPAHGGAF 295
           +Y  G  P  + G YP     L QLY NP+YRY P Y Y GL    I KPTP+ +  GAF
Sbjct: 271 LYSSGLGPAGSGGPYPWGISQLSQLYYNPMYRYPPGYPYSGLMPPGISKPTPISS--GAF 328

Query: 296 SMERLLAD-PAT---FRPNFVQTSPIL 318
           SMERLLA+ PA    FRP      P+ 
Sbjct: 329 SMERLLAEGPANYNQFRPGLNTGHPVF 355

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380021495|ref|XP_003694600.1| PREDICTED: fork head domain transcription factor slp1-like [Apis florea] Back     alignment and taxonomy information
>gi|383861136|ref|XP_003706042.1| PREDICTED: uncharacterized protein LOC100878233 [Megachile rotundata] Back     alignment and taxonomy information
>gi|328787799|ref|XP_003251005.1| PREDICTED: hypothetical protein LOC724740 [Apis mellifera] Back     alignment and taxonomy information
>gi|340712557|ref|XP_003394823.1| PREDICTED: fork head domain transcription factor slp1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|345481290|ref|XP_001602513.2| PREDICTED: hypothetical protein LOC100118579 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332018620|gb|EGI59201.1| Fork head domain transcription factor slp2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307186112|gb|EFN71837.1| Fork head domain transcription factor slp2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|170072730|ref|XP_001870245.1| fork head domain transcription factor slp2 [Culex quinquefasciatus] gi|167869129|gb|EDS32512.1| fork head domain transcription factor slp2 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157125013|ref|XP_001654210.1| forkhead protein/ forkhead protein domain [Aedes aegypti] gi|108882739|gb|EAT46964.1| AAEL001912-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
UNIPROTKB|B3FNS2507 B3FNS2 "FoxG" [Strongylocentro 0.220 0.163 0.927 3.3e-45
FB|FBgn0004567445 slp2 "sloppy paired 2" [Drosop 0.398 0.337 0.607 1.7e-43
ZFIN|ZDB-GENE-990415-267420 foxg1a "forkhead box G1a" [Dan 0.470 0.421 0.521 1.2e-40
UNIPROTKB|F1NP93406 FOXG1 "Forkhead box protein G1 0.220 0.204 0.915 6.8e-40
UNIPROTKB|Q90964451 FOXG1 "Forkhead box protein G1 0.220 0.184 0.915 6.8e-40
UNIPROTKB|P55316489 FOXG1 "Forkhead box protein G1 0.220 0.169 0.915 6.8e-40
UNIPROTKB|Q9YHC5436 foxg1 "Forkhead box protein G1 0.220 0.190 0.915 6.8e-40
MGI|MGI:1347464481 Foxg1 "forkhead box G1" [Mus m 0.220 0.172 0.915 6.8e-40
RGD|2619480 Foxg1 "forkhead box G1" [Rattu 0.220 0.172 0.915 6.8e-40
ZFIN|ZDB-GENE-050419-26379 foxg1c "forkhead box G1c" [Dan 0.412 0.408 0.560 6.8e-40
UNIPROTKB|B3FNS2 B3FNS2 "FoxG" [Strongylocentrotus purpuratus (taxid:7668)] Back     alignment and assigned GO terms
 Score = 430 (156.4 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 77/83 (92%), Positives = 80/83 (96%)

Query:   120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
             +SYNALIMMAIR SPEKRLTLNGIYEYIMTNFPYY+ NKQGWQNSIRHNLSLNKCFVKVP
Sbjct:   190 FSYNALIMMAIRSSPEKRLTLNGIYEYIMTNFPYYRENKQGWQNSIRHNLSLNKCFVKVP 249

Query:   180 RHYDDPGKGNYWMLDASSEDVFI 202
             RHYDDPGKGNYWMLD SS+DVFI
Sbjct:   250 RHYDDPGKGNYWMLDPSSDDVFI 272
GO:0002052 "positive regulation of neuroblast proliferation" evidence=IBA
GO:0003690 "double-stranded DNA binding" evidence=IBA
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA
GO:0005667 "transcription factor complex" evidence=IBA
GO:0007346 "regulation of mitotic cell cycle" evidence=IBA
GO:0008134 "transcription factor binding" evidence=IBA
GO:0008301 "DNA binding, bending" evidence=IBA
GO:0009792 "embryo development ending in birth or egg hatching" evidence=IBA
GO:0009888 "tissue development" evidence=IBA
GO:0009953 "dorsal/ventral pattern formation" evidence=IBA
GO:0016199 "axon midline choice point recognition" evidence=IBA
GO:0035058 "nonmotile primary cilium assembly" evidence=IBA
GO:0045665 "negative regulation of neuron differentiation" evidence=IBA
GO:0045787 "positive regulation of cell cycle" evidence=IBA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IBA
GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA
FB|FBgn0004567 slp2 "sloppy paired 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-267 foxg1a "forkhead box G1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NP93 FOXG1 "Forkhead box protein G1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q90964 FOXG1 "Forkhead box protein G1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P55316 FOXG1 "Forkhead box protein G1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9YHC5 foxg1 "Forkhead box protein G1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:1347464 Foxg1 "forkhead box G1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2619 Foxg1 "forkhead box G1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050419-26 foxg1c "forkhead box G1c" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
pfam0025096 pfam00250, Fork_head, Fork head domain 1e-61
cd0005978 cd00059, FH, Forkhead (FH), also known as a "winge 8e-54
smart0033989 smart00339, FH, FORKHEAD 4e-52
COG5025610 COG5025, COG5025, Transcription factor of the Fork 3e-19
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 1e-15
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain Back     alignment and domain information 
 Score =  192 bits (491), Expect = 1e-61
 Identities = 67/96 (69%), Positives = 77/96 (80%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           KPPYSY ALI MAI+QSPEK LTL+ IY++IM  FPYY+ NKQGWQNSIRHNLSLNKCF+
Sbjct: 1   KPPYSYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQNKQGWQNSIRHNLSLNKCFI 60

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           KVPR  D PGKG+YW LD  SE++F  G   K R+R
Sbjct: 61  KVPRSPDKPGKGSYWTLDPESENMFENGKYLKRRKR 96

Length = 96
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>gnl|CDD|214627 smart00339, FH, FORKHEAD Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
PF0025096 Fork_head: Fork head domain; InterPro: IPR001766 T 100.0
cd0005978 FH Forkhead (FH), also known as a "winged helix". 100.0
smart0033989 FH FORKHEAD. FORKHEAD, also known as a "winged hel 100.0
KOG3563|consensus454 100.0
KOG3562|consensus277 100.0
KOG2294|consensus454 100.0
KOG4385|consensus581 99.87
COG5025610 Transcription factor of the Forkhead/HNF3 family [ 99.83
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 99.5
PF0053877 Linker_histone: linker histone H1 and H5 family; I 92.97
smart0052666 H15 Domain in histone families 1 and 5. 92.06
cd0007388 H15 linker histone 1 and histone 5 domains; the ba 88.91
PF0506672 HARE-HTH: HB1, ASXL, restriction endonuclease HTH 88.27
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-38  Score=260.03  Aligned_cols=96  Identities=60%  Similarity=1.112  Sum_probs=87.7

Q ss_pred             CCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeEecCC
Q psy15918        117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDAS  196 (376)
Q Consensus       117 KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ldP~  196 (376)
                      ||||||++||++||+++++++|||+|||+||+++||||+.+..|||||||||||+|+||+||++..++.|||+||+||++
T Consensus         1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~   80 (96)
T PF00250_consen    1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPE   80 (96)
T ss_dssp             -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CT
T ss_pred             CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHH
Confidence            79999999999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             chhhhcCCccCccCCC
Q psy15918        197 SEDVFIGGTTGKLRRR  212 (376)
Q Consensus       197 ~e~~f~~G~~~K~RRR  212 (376)
                      +...|.++...++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~   96 (96)
T PF00250_consen   81 AIEEFEKGRFKRRRKR   96 (96)
T ss_dssp             HHHHHHHSCCSSSSSS
T ss_pred             HHHHHhcchhhhhhcc
Confidence            9999999876555443

Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
>cd00059 FH Forkhead (FH), also known as a "winged helix" Back     alignment and domain information
>smart00339 FH FORKHEAD Back     alignment and domain information
>KOG3563|consensus Back     alignment and domain information
>KOG3562|consensus Back     alignment and domain information
>KOG2294|consensus Back     alignment and domain information
>KOG4385|consensus Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication) Back     alignment and domain information
>smart00526 H15 Domain in histone families 1 and 5 Back     alignment and domain information
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Back     alignment and domain information
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
1d5v_A94 Solution Structure Of The Forkhead Domain Of The Ad 5e-29
2hfh_A109 The Nmr Structures Of A Winged Helix Protein: Genes 8e-27
2hdc_A97 Structure Of Transcription Factor GenesisDNA COMPLE 9e-27
2c6y_A111 Crystal Structure Of Interleukin Enhancer-Binding F 1e-25
1jxs_A98 Solution Structure Of The Dna-Binding Domain Of Int 2e-25
1vtn_C102 Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco 7e-24
2a3s_A101 Solution Structure And Dynamics Of Dna-Binding Doma 4e-23
1kq8_A100 Solution Structure Of Winged Helix Protein Hfh-1 Le 3e-20
1e17_A150 Solution Structure Of The Dna Binding Domain Of The 5e-15
3l2c_A110 Crystal Structure Of The Dna Binding Domain Of Foxo 4e-14
3co6_C100 Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Le 4e-13
3co7_C117 Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Le 2e-12
3g73_A142 Structure Of The Foxm1 Dna Binding Length = 142 2e-12
2kiu_A87 Solution Structure And Backbone Dynamics Of The Dna 2e-12
2a07_F93 Crystal Structure Of Foxp2 Bound Specifically To Dn 3e-12
2uzk_A97 Crystal Structure Of The Human Foxo3a-Dbd Bound To 4e-12
3qrf_F82 Structure Of A Domain-Swapped Foxp3 Dimer Length = 1e-11
2k86_A103 Solution Structure Of Foxo3a Forkhead Domain Length 1e-11
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94 Back     alignment and structure 
Iteration: 1

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 68/82 (82%)
Query: 120 YSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVP 179
           YSY ALI MAI+ +PEK++TLNGIY++IM  FP+Y+ NKQGWQNSIRHNLSLN+CFVKVP
Sbjct: 7   YSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVP 66
Query: 180 RHYDDPGKGNYWMLDASSEDVF 201
           R    PGKG+YW LD  S ++F
Sbjct: 67  RDDKKPGKGSYWTLDPDSYNMF 88
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109 Back     alignment and structure
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97 Back     alignment and structure
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111 Back     alignment and structure
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98 Back     alignment and structure
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102 Back     alignment and structure
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101 Back     alignment and structure
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100 Back     alignment and structure
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound To Dna Length = 110 Back     alignment and structure
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna Length = 100 Back     alignment and structure
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna Length = 117 Back     alignment and structure
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding Length = 142 Back     alignment and structure
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The Dna-Binding Domain Of Foxp1: Insight Into Its Domain Swapping Length = 87 Back     alignment and structure
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna. Length = 93 Back     alignment and structure
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna Length = 97 Back     alignment and structure
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer Length = 82 Back     alignment and structure
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain Length = 103 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
2c6y_A111 Forkhead box protein K2; transcription regulation, 4e-65
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 1e-62
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 2e-62
2hdc_A97 Protein (transcription factor); structure, dyanami 6e-62
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 3e-59
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 4e-52
3bpy_A85 FORK head domain, forkhead transcription factor FO 8e-52
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 3e-50
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 5e-50
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 7e-50
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 1e-47
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111 Back     alignment and structure
 Score =  201 bits (513), Expect = 4e-65
 Identities = 57/110 (51%), Positives = 75/110 (68%)

Query: 103 ANEEGKPKECKKDEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQ 162
           +   G+      D KPPYSY  LI+ AI  +P+K+LTLNGIY +I  N+PYY+T  +GWQ
Sbjct: 2   SMTGGQQMGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQ 61

Query: 163 NSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           NSIRHNLSLN+ F+KVPR  ++PGKG++W +D +SE   I     K R R
Sbjct: 62  NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109 Back     alignment and structure
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97 Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100 Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142 Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85 Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110 Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
2hdc_A97 Protein (transcription factor); structure, dyanami 100.0
1vtn_C102 HNF-3/FORK head DNA-recognition motif; protein-DNA 100.0
2c6y_A111 Forkhead box protein K2; transcription regulation, 100.0
1kq8_A100 HFH-1, hepatocyte nuclear factor 3 forkhead homolo 100.0
2hfh_A109 Genesis, HFH-2; HNF-3 homologues, winged helix pro 100.0
3coa_C117 Forkhead box protein O1; winged helix, forkhead do 100.0
3l2c_A110 Forkhead box protein O4; winged helix, transcripti 100.0
3bpy_A85 FORK head domain, forkhead transcription factor FO 100.0
1e17_A150 AFX; DNA binding domain, winged helix; NMR {Homo s 100.0
2a07_F93 Forkhead box protein P2; double-helix, swapping, h 100.0
3g73_A142 Forkhead box protein M1; DNA-binding domain, forkh 100.0
1uss_A88 Histone H1; DNA binding protein, linker histone, D 83.52
1uhm_A78 Histone H1, histone HHO1P; winged helix-turn-helix 83.35
1hst_A90 Histone H5; chromosomal protein; 2.60A {Gallus gal 80.69
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
Probab=100.00  E-value=3.4e-43  Score=291.42  Aligned_cols=95  Identities=63%  Similarity=1.090  Sum_probs=90.7

Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeEecC
Q psy15918        116 EKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDA  195 (376)
Q Consensus       116 ~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ldP  195 (376)
                      .||||||++||+|||+++++++|||+|||+||+++||||+.+..|||||||||||||+||+||+|+.+++|||+||+|||
T Consensus         1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p   80 (97)
T 2hdc_A            1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP   80 (97)
T ss_dssp             CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhcCCccCccC
Q psy15918        196 SSEDVFIGGTTGKLR  210 (376)
Q Consensus       196 ~~e~~f~~G~~~K~R  210 (376)
                      +++++|++|.+.|+|
T Consensus        81 ~~~~~f~~g~~~rrr   95 (97)
T 2hdc_A           81 QSEDMFDNGSFLRRR   95 (97)
T ss_dssp             THHHHHHHSCCCSSS
T ss_pred             CHHHHHhCCCccCCC
Confidence            999999999874433
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Back     alignment and structure
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Back     alignment and structure
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Back     alignment and structure
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Back     alignment and structure
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C* Back     alignment and structure
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} Back     alignment and structure
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Back     alignment and structure
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Back     alignment and structure
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A Back     alignment and structure
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 Back     alignment and structure
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d2hdca_97 a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta 5e-47
d2c6ya198 a.4.5.14 (A:1-98) Interleukin enhancer binding fac 2e-46
d1d5va_94 a.4.5.14 (A:) Adipocyte-transcription factor FREAC 2e-44
d3bpya185 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie 1e-37
d1kq8a_75 a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra 2e-36
d2a07f182 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP 3e-36
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  153 bits (388), Expect = 5e-47
 Identities = 61/96 (63%), Positives = 72/96 (75%)

Query: 117 KPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFV 176
           KPPYSY ALI MAI QSP+K+LTL+GI E+I   FPYY+     WQNSIRHNLSLN CFV
Sbjct: 2   KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61

Query: 177 KVPRHYDDPGKGNYWMLDASSEDVFIGGTTGKLRRR 212
           K+PR   +PGKGNYW LD  SED+F  G+  + R+R
Sbjct: 62  KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75 Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d2c6ya198 Interleukin enhancer binding factor {Human (Homo s 100.0
d2hdca_97 Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d1d5va_94 Adipocyte-transcription factor FREAC-11 (s12, fkh- 100.0
d1kq8a_75 HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv 100.0
d2a07f182 Forkhead box protein P2, FOXP2 {Human (Homo sapien 100.0
d3bpya185 Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ussa_88 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 92.64
d1hsta_74 Histone H5, globular domain {Chicken (Gallus gallu 91.3
d1usta_92 Histone H1 homologue Hho1p {Baker's yeast (Sacchar 91.08
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=280.11  Aligned_cols=97  Identities=57%  Similarity=1.038  Sum_probs=91.6

Q ss_pred             CCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCCCcccCCCCcccccccccccCcceeeecCCCCCCCCceeeEec
Q psy15918        115 DEKPPYSYNALIMMAIRQSPEKRLTLNGIYEYIMTNFPYYKTNKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLD  194 (376)
Q Consensus       115 ~~KPPySYaaLIa~AI~sSp~krLTL~EIY~wI~~~fPYyr~~~~GWqNSIRHNLSLNkcFvKvpR~~~epGKG~~W~ld  194 (376)
                      +.||||||++||++||+++++++|||+|||+||+++|||||.+..|||||||||||+|+||+||+|..+++|||+||+||
T Consensus         1 ~~KP~~sY~~LI~~Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~   80 (98)
T d2c6ya1           1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID   80 (98)
T ss_dssp             CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEEC
T ss_pred             CCCCCccHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcchhhchhcccccceEeccCCCCCCCCCceEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhcCCccCccCC
Q psy15918        195 ASSEDVFIGGTTGKLRR  211 (376)
Q Consensus       195 P~~e~~f~~G~~~K~RR  211 (376)
                      |+++++|.+++..|+|+
T Consensus        81 p~~~~~~~~~~~~krr~   97 (98)
T d2c6ya1          81 PASESKLIEQAFRKRRP   97 (98)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             ccHHhhhhcchhhccCC
Confidence            99999999886655444
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure