Psyllid ID: psy15955

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
Protein Sequence
MFDGFKNHAISKLTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLLPNPTCTQNKIPSVSNFAL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEEEEEEEccccEEEEEEEEEccccccccccccccEEEEEEEcccccEEEEEEEccccccEEEcEEEEccccHHHHcccEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEccccccccccEEEEEEEEEccccEEEEEEEEEccccccccccccccEEEEEEEEccEEEccccccccccccccccccEEEEEcccccccccEEEEEEEEcccccccEEEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEcccccccccccccccEEEEEcccccccccccccccccEEEEEEEccccccccccEEEEEEcccccccEEEEEcccccccccEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEEEccccccccccccEEEEEEEEccccccEEccccccccccEEEEEEEEccccHHHHcccEEEEEEEEccccccccccEEEEEEccccccccccHHHHHccccccccccEEEEEEEEEccccEEEEEEEEEEccccccccccccEEEEEEEEcccccEEEEcEEEEccccccccccEEEEEccHHHHcEEEEEEEEEEccccccccEEEEEEEEcccccccccccHHHHHHHcccccHHHHcccccHHHHHHHHHHccccccccccccHHHcHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHcccccccHccccHHHHHHHHHHHccHHHHccccHHHHHHccHHHcccc
Coil and Loop (DISEMBL)
mfdgfknhaiskLTLSRFLSQSVAQLETagttvdsnnskspvpgsshamegaiassssstplhNKAVANvkagehpssafmqsRSVSLVDMyidntepsenvgqihfsleydfdnstLILRVISakelpakdmsgtsdpyvkvallpdkkhrLETKIkrrtlnprwnetlyfegfpiqklQSRVLHLhvfdydrfsrddsigevflplcqvdlsekptfwkalkppakdkcgelltslcyhpsnsvLTITLLKARNlkakdingksdpYVKVWLQFGEKRIEKRKTQIFkcnlnpvfnesfsfnvpwekireCSLNVMVMDFDNIGRNELIGRILLagkngsgasetkHWQDMITKPRQTIVqwhrlkpdheMQTFLQSVGVshiriptyhpasngaaENMVGVVKRFLRKCNWNNVDEELLNFsqsynstphttlgvspaelhlgRKLKTTfdkllpnptctqnkipsvsnfal
Flexible Loop (DISEMBL)
mfdgfknhaisklTLSRFLSQSVAQLEtagttvdsnnskSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKagehpssafMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKelpakdmsgtsdpyvkvallpdkkhrletkikrrtlnprwnetlYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKakdingksdpyvKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTfdkllpnptctqnkipsvsnfal
Low Complexity Region (SEG)
MFDGFKNHAISKLTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLLPNPTCTQNKIPSVSNFAL
Disordered region (IsUnstruct)
***************************************************************************************LVDMYIDNT**SENVGQIHFSLEYDFDNSTLILRVISAKE***********PYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG*****TKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLL******************
Disordered Region (DISOPRED)
*****************************************************************************************************VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP*****CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQF************FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKN***ASETKHWQDMITKPRQTIVQWHRL***************************************RFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELH***********LLPNPTCTQNKIPSVSNFA*
Disordered Region (DISEMBL)
MFDGFKNHAISKLTLSRFLSQSVAQL***********************************LHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKN********HWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLLPNPTCTQNKIPSVSNFAL
Disordered Region (DISPRO)
***************************************************************************************************ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLLPNPTCTQNKIPSVSN***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDGFKNHAISKLTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLLPNPTCTQNKIPSVSNFAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	475	2.2.26 [Sep-21-2011]
O43581	403	Synaptotagmin-7 OS=Homo s	yes	N/A	0.562	0.662	0.586	1e-94
Q9R0N7	403	Synaptotagmin-7 OS=Mus mu	no	N/A	0.562	0.662	0.594	8e-91
P29101	422	Synaptotagmin-2 OS=Rattus	no	N/A	0.576	0.649	0.485	8e-71
P46097	422	Synaptotagmin-2 OS=Mus mu	no	N/A	0.576	0.649	0.485	8e-71
Q8N9I0	419	Synaptotagmin-2 OS=Homo s	no	N/A	0.576	0.653	0.485	9e-71
P21521	474	Synaptotagmin 1 OS=Drosop	no	N/A	0.6	0.601	0.457	3e-70
Q5R4J5	419	Synaptotagmin-1 OS=Pongo	no	N/A	0.574	0.651	0.462	7e-69
P24506	439	Synaptotagmin-B OS=Diplob	N/A	N/A	0.568	0.615	0.478	6e-67
P34693	441	Synaptotagmin-1 OS=Caenor	yes	N/A	0.564	0.607	0.489	5e-66
P47191	424	Synaptotagmin-1 OS=Gallus	no	N/A	0.574	0.643	0.469	6e-65

>sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 159/271 (58%), Positives = 211/271 (77%), Gaps = 4/271 (1%)

Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
           EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct: 134 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 193

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           + LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct: 194 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 253

Query: 220 WKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
           WK LKP +      GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct: 254 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 313

Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
           +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct: 314 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 373

Query: 338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
            K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct: 374 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 402

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.
Homo sapiens (taxid: 9606)

>sp|Q9R0N7|SYT7_MOUSE Synaptotagmin-7 OS=Mus musculus GN=Syt7 PE=1 SV=1

 Score =  334 bits (857), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 211/271 (77%), Gaps = 4/271 (1%)

Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
           EN+G+I FS+ Y+F  STL ++V+ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct: 134 ENLGRIQFSVGYNFQESTLTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 193

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           + LNP WNET  FEGFP +K+  RVL+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct: 194 KNLNPHWNETFLFEGFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 253

Query: 220 WKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
           WK LKP +      GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct: 254 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 313

Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
           +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct: 314 DKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 373

Query: 338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
            K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct: 374 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 402

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Mus musculus (taxid: 10090)

>sp|P29101|SYT2_RAT Synaptotagmin-2 OS=Rattus norvegicus GN=Syt2 PE=1 SV=1

 Score =  268 bits (685), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 136/280 (48%), Positives = 193/280 (68%), Gaps = 6/280 (2%)

Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR 160
           N+G++ FSL+YDF  + L + V+ A ELPA DM GTSDPYVKV LLPDKK + ETK+ R+
Sbjct: 142 NLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRK 201

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           TLNP +NET  F+  P Q+L  + L + ++D+DRFS+ D IGEV +P+  VDL +    W
Sbjct: 202 TLNPAFNETFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEW 260

Query: 221 KALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
           + L+   K+   K G++ TSL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L   
Sbjct: 261 RDLQGGEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQN 320

Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
            KR++K+KT + K  LNP FNESFSF +P+E+I++  + V V+D+D +G+NE IG+I + 
Sbjct: 321 GKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFV- 379

Query: 338 GKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           G N +G +E +HW DM+  PR+ I QWH LKP+ E+   L
Sbjct: 380 GSNATG-TELRHWSDMLANPRRPIAQWHSLKPEEEVDALL 418

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Rattus norvegicus (taxid: 10116)

>sp|P46097|SYT2_MOUSE Synaptotagmin-2 OS=Mus musculus GN=Syt2 PE=1 SV=1

 Score =  268 bits (685), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 136/280 (48%), Positives = 193/280 (68%), Gaps = 6/280 (2%)

Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR 160
           N+G++ FSL+YDF  + L + V+ A ELPA DM GTSDPYVKV LLPDKK + ETK+ R+
Sbjct: 142 NLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRK 201

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           TLNP +NET  F+  P Q+L  + L + ++D+DRFS+ D IGEV +P+  VDL +    W
Sbjct: 202 TLNPAFNETFTFK-VPYQELAGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEW 260

Query: 221 KALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
           + L+   K+   K G++ TSL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L   
Sbjct: 261 RDLQGGEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQN 320

Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
            KR++K+KT + K  LNP FNESFSF +P+E+I++  + V V+D+D +G+NE IG+I + 
Sbjct: 321 GKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFV- 379

Query: 338 GKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           G N +G +E +HW DM+  PR+ I QWH LKP+ E+   L
Sbjct: 380 GSNATG-TELRHWSDMLANPRRPIAQWHSLKPEEEVDALL 418

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Mus musculus (taxid: 10090)

>sp|Q8N9I0|SYT2_HUMAN Synaptotagmin-2 OS=Homo sapiens GN=SYT2 PE=1 SV=2

 Score =  268 bits (684), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 136/280 (48%), Positives = 193/280 (68%), Gaps = 6/280 (2%)

Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR 160
           N+G++ FSL+YDF  + L + V+ A ELPA DM GTSDPYVKV LLPDKK + ETK+ R+
Sbjct: 139 NLGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRK 198

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           TLNP +NET  F+  P Q+L  + L + ++D+DRFS+ D IGEV +P+  VDL +    W
Sbjct: 199 TLNPAFNETFTFK-VPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEW 257

Query: 221 KALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
           + L+   K+   K G++ TSL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L   
Sbjct: 258 RDLQGGEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQN 317

Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
            KR++K+KT + K  LNP FNESFSF +P+E+I++  + V V+D+D +G+NE IG+I + 
Sbjct: 318 GKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAIGKIFV- 376

Query: 338 GKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           G N +G +E +HW DM+  PR+ I QWH LKP+ E+   L
Sbjct: 377 GSNATG-TELRHWSDMLANPRRPIAQWHSLKPEEEVDALL 415

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Homo sapiens (taxid: 9606)

>sp|P21521|SY65_DROME Synaptotagmin 1 OS=Drosophila melanogaster GN=Syt1 PE=1 SV=2

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/291 (45%), Positives = 197/291 (67%), Gaps = 6/291 (2%)

Query: 94  DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL 153
           ++ +  + +G+++F LEYDF++++L + VI A+ELPA DM GTSDPYVKV LLPDKK + 
Sbjct: 185 EDKQSEQKLGRLNFKLEYDFNSNSLAVTVIQAEELPALDMGGTSDPYVKVYLLPDKKKKF 244

Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL 213
           ETK+ R+TL+P +NET  F+  P     ++ L   +FD+DRFS+ D IGEV +PLC +DL
Sbjct: 245 ETKVHRKTLSPVFNETFTFKSLPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVPLCTIDL 304

Query: 214 SEKPTFWKAL----KPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPY 269
           ++    W+ L        ++K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPY
Sbjct: 305 AQTIEEWRDLVSVEGEGGQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPY 364

Query: 270 VKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNE 329
           VK+ +    KR++K+KT + KC LNP +NESFSF VP+E++++  L V V+D+D IG +E
Sbjct: 365 VKIAIMQNGKRLKKKKTSVKKCTLNPYYNESFSFEVPFEQMQKICLVVTVVDYDRIGTSE 424

Query: 330 LIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSV 380
            IGR +L G  G+G +E +HW DM+  PR+ I QWH LK   E    L+++
Sbjct: 425 PIGRCIL-GCMGTG-TELRHWSDMLASPRRPIAQWHTLKDPEETDEILKNM 473

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Drosophila melanogaster (taxid: 7227)

>sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2 SV=1

 Score =  261 bits (668), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 129/279 (46%), Positives = 187/279 (67%), Gaps = 6/279 (2%)

Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT 161
           +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R+T
Sbjct: 140 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT 199

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
           LNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD       W+
Sbjct: 200 LNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 258

Query: 222 ALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE 278
            L+   K+   K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    
Sbjct: 259 DLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 318

Query: 279 KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAG 338
           KR++K++T I K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ + G
Sbjct: 319 KRLKKKETTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-G 377

Query: 339 KNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
            N +GA E +HW DM+  PR+ I QWH L+ + E+   L
Sbjct: 378 YNSTGA-ELRHWSDMLANPRRPIAQWHTLQVEEEVDAML 415

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2.

Pongo abelii (taxid: 9601)

>sp|P24506|SY62_DIPOM Synaptotagmin-B OS=Diplobatis ommata GN=P65-B PE=1 SV=1

 Score =  255 bits (651), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/276 (47%), Positives = 191/276 (69%), Gaps = 6/276 (2%)

Query: 105 IHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNP 164
           I FSL+YDF  + L + +I A ELPA DM GTSDPYVKV LLPDKK + ETK++++TLNP
Sbjct: 163 IQFSLDYDFQANQLTVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVQKKTLNP 222

Query: 165 RWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224
            +NE+  F+  P Q+L  + L + V+D+DRFS+ D IG+V + + +VDL ++   W+ L+
Sbjct: 223 TFNESFVFK-VPYQELGGKTLMMAVYDFDRFSKHDCIGQVTVLMTKVDLGQQLEEWRDLE 281

Query: 225 PPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI 281
              K+   K G++ TSL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    KR+
Sbjct: 282 SAEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLLQNGKRL 341

Query: 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG 341
           +K+KT + K  LNP +NESFSF +P+E+I++  + V V+D+D IG+N+ IG+I + G N 
Sbjct: 342 KKKKTTVKKNTLNPYYNESFSFEIPFEQIQKVQVCVTVLDYDKIGKNDAIGKIFV-GSNA 400

Query: 342 SGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           SG +E +HW DM+  PR+ I QWH LKP+ E+   L
Sbjct: 401 SG-TELRHWSDMLANPRRPIAQWHSLKPEEEVDVAL 435

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Discopyge ommata (taxid: 7785)

>sp|P34693|SYT1_CAEEL Synaptotagmin-1 OS=Caenorhabditis elegans GN=snt-1 PE=2 SV=1

 Score =  252 bits (643), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 135/276 (48%), Positives = 188/276 (68%), Gaps = 8/276 (2%)

Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT 161
           +G+I + L+YDF    L + VI A++LP  DMSGTSDPYVK+ LLP+KK ++ETK+ R+T
Sbjct: 160 LGRIQYKLDYDFQQGQLTVTVIQAEDLPGMDMSGTSDPYVKLYLLPEKKKKVETKVHRKT 219

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
           LNP +NET  F+     ++ ++ L   ++D+DRFS+ D IG+V +PL ++DL      WK
Sbjct: 220 LNPVFNETFIFK-VAFNEITAKTLVFAIYDFDRFSKHDQIGQVLIPLGKIDLGAVIEEWK 278

Query: 222 ALKPPAKDK-----CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQF 276
            + PP  DK      G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L  
Sbjct: 279 DIAPPPDDKEAEKSLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIVLMQ 338

Query: 277 GEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           G KR++K+KT I KC LNP +NESFSF VP+E+I++ SL + VMD+D +G N+ IGR LL
Sbjct: 339 GGKRLKKKKTSIKKCTLNPYYNESFSFEVPFEQIQKVSLMITVMDYDKLGSNDAIGRCLL 398

Query: 337 AGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHE 372
            G NG+GA E +HW DM+  PR+ I QWH L P  E
Sbjct: 399 -GCNGTGA-ELRHWMDMLASPRRPIAQWHTLGPVEE 432

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Caenorhabditis elegans (taxid: 6239)

>sp|P47191|SYT1_CHICK Synaptotagmin-1 OS=Gallus gallus GN=SYT1 PE=2 SV=1

 Score =  248 bits (634), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 131/279 (46%), Positives = 187/279 (67%), Gaps = 6/279 (2%)

Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT 161
           +G+I +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R+T
Sbjct: 145 LGKIQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKYETKVHRKT 204

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
           LNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  + +  VD       W+
Sbjct: 205 LNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEYKVAMNTVDFGHVTEEWR 263

Query: 222 ALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE 278
            L+   K+   K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    
Sbjct: 264 DLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 323

Query: 279 KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAG 338
           KR++K+KT I K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ + G
Sbjct: 324 KRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQIVVTVLDYDKIGKNDAIGKVFV-G 382

Query: 339 KNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
            N +GA E +HW DM+  PR+ I QWH L+P+ E+   L
Sbjct: 383 YNSTGA-ELRHWSDMLANPRRPIAQWHTLQPEEEVDAML 420

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
350420507	419	PREDICTED: synaptotagmin-7-like [Bombus	0.715	0.811	0.830	1e-170
332023151	376	Synaptotagmin-7 [Acromyrmex echinatior]	0.690	0.872	0.857	1e-169
380028658	418	PREDICTED: synaptotagmin-7-like [Apis fl	0.707	0.803	0.819	1e-169
328791590	420	PREDICTED: synaptotagmin-7 [Apis mellife	0.686	0.776	0.853	1e-169
345479587	435	PREDICTED: synaptotagmin-7 [Nasonia vitr	0.711	0.777	0.798	1e-168
383864781	431	PREDICTED: synaptotagmin-7-like [Megachi	0.646	0.712	0.896	1e-167
340709746	414	PREDICTED: synaptotagmin-7-like [Bombus	0.648	0.743	0.889	1e-167
357623549	293	hypothetical protein KGM_07286 [Danaus p	0.614	0.996	0.917	1e-162
307190357	310	Synaptotagmin-7 [Camponotus floridanus]	0.614	0.941	0.917	1e-162
307198246	296	Synaptotagmin-7 [Harpegnathos saltator]	0.614	0.986	0.914	1e-161

>gi|350420507|ref|XP_003492531.1| PREDICTED: synaptotagmin-7-like [Bombus impatiens]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/342 (83%), Positives = 309/342 (90%), Gaps = 2/342 (0%)

Query: 29  AGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFMQSRSVSL 88
           AGT+    N+ S + G+S A  G     + +  + NK + NVK G+HPS AF+QSRS+SL
Sbjct: 80  AGTSGAGANAVS-LGGTSSAAAGTAEPRTPTAGVQNKQLQNVK-GDHPSKAFLQSRSMSL 137

Query: 89  VDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD 148
           VDMYIDN+EPSENVGQIHFSLEYDF N+TLILR+I  K+LPAKD+SGTSDPYV+V LLPD
Sbjct: 138 VDMYIDNSEPSENVGQIHFSLEYDFQNTTLILRIIQGKDLPAKDLSGTSDPYVRVTLLPD 197

Query: 149 KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
           KKHRLETKIKRRTLNPRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGE+FLPL
Sbjct: 198 KKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEMFLPL 257

Query: 209 CQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDP 268
           CQVD S+KP+FWKALKPPAKDKCGELL SLCYHPSNSVLT+TLLKARNLKAKDINGKSDP
Sbjct: 258 CQVDFSDKPSFWKALKPPAKDKCGELLCSLCYHPSNSVLTLTLLKARNLKAKDINGKSDP 317

Query: 269 YVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRN 328
           YVKVWLQFG+KRIEKRKT IFKC LNPVFNE+FSFNVPWEKIRECSL+VMVMDFDNIGRN
Sbjct: 318 YVKVWLQFGDKRIEKRKTPIFKCTLNPVFNEAFSFNVPWEKIRECSLDVMVMDFDNIGRN 377

Query: 329 ELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370
           ELIGRI LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 378 ELIGRIQLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPE 419

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023151|gb|EGI63407.1| Synaptotagmin-7 [Acromyrmex echinatior]

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/329 (85%), Positives = 302/329 (91%), Gaps = 1/329 (0%)

Query: 42  VPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSEN 101
            PGS  +  G++   + +    NK + NVK GEHPS AF+QSRS+SLVDMYIDN+EPSEN
Sbjct: 49  APGSGASNAGSVEPRTPTAGPQNKQLQNVK-GEHPSKAFLQSRSISLVDMYIDNSEPSEN 107

Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT 161
           VGQIHFSLEYDF NSTLILR+I  K+LPAKD+SGTSDPYV+V LLPDKKHRLETKIKRRT
Sbjct: 108 VGQIHFSLEYDFQNSTLILRIIQGKDLPAKDLSGTSDPYVRVTLLPDKKHRLETKIKRRT 167

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
           LNPRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGE+FLPLCQVDLSEKP+FWK
Sbjct: 168 LNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEMFLPLCQVDLSEKPSFWK 227

Query: 222 ALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI 281
           ALKPPAKDKCGELL SLCYHPSNS+LT+TLLKARNLKAKDINGKSDPYVKVWLQFG+KRI
Sbjct: 228 ALKPPAKDKCGELLCSLCYHPSNSILTLTLLKARNLKAKDINGKSDPYVKVWLQFGDKRI 287

Query: 282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG 341
           EKRKT IFKC LNPVFNE FSFNVPWEKIRECSL+VMVMDFDNIGRNELIGRI LAGKNG
Sbjct: 288 EKRKTPIFKCTLNPVFNEVFSFNVPWEKIRECSLDVMVMDFDNIGRNELIGRIQLAGKNG 347

Query: 342 SGASETKHWQDMITKPRQTIVQWHRLKPD 370
           SGASETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 348 SGASETKHWQDMITKPRQTIVQWHRLKPE 376

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028658|ref|XP_003698009.1| PREDICTED: synaptotagmin-7-like [Apis florea]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/343 (81%), Positives = 309/343 (90%), Gaps = 7/343 (2%)

Query: 28  TAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFMQSRSVS 87
           T+G ++ +N       G+ +   G + S + +  + NK + NVK GEHPS AF+Q+RS+S
Sbjct: 83  TSGISIGTN------VGTGNVASGTVESRTPTIGVQNKQLQNVK-GEHPSKAFLQNRSMS 135

Query: 88  LVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP 147
           LVDMYIDN+EPSENVGQIHFSLEYDF N+TLILR+I  K+LPAKD+SGTSDPYV+V LLP
Sbjct: 136 LVDMYIDNSEPSENVGQIHFSLEYDFQNTTLILRIIQGKDLPAKDLSGTSDPYVRVTLLP 195

Query: 148 DKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
           DKKHRLETKIKRRTLNPRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGE+FLP
Sbjct: 196 DKKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEMFLP 255

Query: 208 LCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSD 267
           LCQVD S+KP+FWKALKPPAKDKCGELL SLCYHPSNSVLT+TLLKARNLKAKDINGKSD
Sbjct: 256 LCQVDFSDKPSFWKALKPPAKDKCGELLCSLCYHPSNSVLTLTLLKARNLKAKDINGKSD 315

Query: 268 PYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR 327
           PYVKVWLQFG+KRIEKRKT IFKC LNPVFNE+FSFNVPWEKIRECSL+VMVMDFDNIGR
Sbjct: 316 PYVKVWLQFGDKRIEKRKTPIFKCTLNPVFNEAFSFNVPWEKIRECSLDVMVMDFDNIGR 375

Query: 328 NELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370
           NELIGRI LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 376 NELIGRIQLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPE 418

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791590|ref|XP_392664.3| PREDICTED: synaptotagmin-7 [Apis mellifera]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/327 (85%), Positives = 303/327 (92%), Gaps = 1/327 (0%)

Query: 44  GSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVG 103
           G+ +   G + S +S+  + NK + NVK GEHPS AF+Q+RS+SLVDMYIDN+EPSENVG
Sbjct: 95  GTGNVASGTVESRTSTIGVQNKQLQNVK-GEHPSKAFLQNRSMSLVDMYIDNSEPSENVG 153

Query: 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLN 163
           QIHFSLEYDF N+TLILR+I  K+LPAKD+SGTSDPYV+V LLPDKKHRLETKIKRRTLN
Sbjct: 154 QIHFSLEYDFQNTTLILRIIQGKDLPAKDLSGTSDPYVRVTLLPDKKHRLETKIKRRTLN 213

Query: 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL 223
           PRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGE+FLPLCQVD S+KP+FWKAL
Sbjct: 214 PRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEMFLPLCQVDFSDKPSFWKAL 273

Query: 224 KPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEK 283
           KPPAKDKCGELL SLCYHPSNSVLT+TLLKARNLKAKDINGKSDPYVKVWLQFG+KRIEK
Sbjct: 274 KPPAKDKCGELLCSLCYHPSNSVLTLTLLKARNLKAKDINGKSDPYVKVWLQFGDKRIEK 333

Query: 284 RKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343
           RKT IFKC LNPVFNE+FSFNVPWEKIRECSL+VMVMDFDNIGRNELIGRI LAGKNGSG
Sbjct: 334 RKTPIFKCTLNPVFNEAFSFNVPWEKIRECSLDVMVMDFDNIGRNELIGRIQLAGKNGSG 393

Query: 344 ASETKHWQDMITKPRQTIVQWHRLKPD 370
           ASETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 394 ASETKHWQDMITKPRQTIVQWHRLKPE 420

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479587|ref|XP_001607496.2| PREDICTED: synaptotagmin-7 [Nasonia vitripennis]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/357 (79%), Positives = 309/357 (86%), Gaps = 19/357 (5%)

Query: 32  TVDSNNSKSPV-----PGSSHAMEGAIASSSSSTPL-------------HNKAVANVKAG 73
           T  S  SKSP      P S+    G  A ++S   +              NK + NVK G
Sbjct: 80  TTGSPGSKSPAGVSGGPASATGSSGTSAGNASGAAVGPGGEPRTPTAGPQNKQLQNVK-G 138

Query: 74  EHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDM 133
           EHPS AF+QSRS+SLVDMYIDN EP+ENVGQIHFSLEYDF ++TLILR+I  K+LPAKD+
Sbjct: 139 EHPSKAFLQSRSISLVDMYIDNAEPTENVGQIHFSLEYDFQSTTLILRIIQGKDLPAKDL 198

Query: 134 SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193
           SGTSDPYV+V LLPDKKHRLETKIKRRTLNPRWNET YFEGFPIQKLQSRVLHLHVFDYD
Sbjct: 199 SGTSDPYVRVTLLPDKKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYD 258

Query: 194 RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLK 253
           RFSRDDSIGE+FLPLCQVDLSEKP+FWK+LKPPAKDKCGELL SLCYHPSNSVLT+T+LK
Sbjct: 259 RFSRDDSIGEMFLPLCQVDLSEKPSFWKSLKPPAKDKCGELLCSLCYHPSNSVLTLTVLK 318

Query: 254 ARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIREC 313
           ARNLKAKDINGKSDPYVKVWLQFG+KRIEKRKT+I+KC LNPVFNE FSFNVPWEKIREC
Sbjct: 319 ARNLKAKDINGKSDPYVKVWLQFGDKRIEKRKTEIYKCTLNPVFNEPFSFNVPWEKIREC 378

Query: 314 SLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370
           SL+VMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 379 SLDVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPE 435

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864781|ref|XP_003707856.1| PREDICTED: synaptotagmin-7-like [Megachile rotundata]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 276/308 (89%), Positives = 293/308 (95%), Gaps = 1/308 (0%)

Query: 63  HNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRV 122
            NK + NVK G+HPS AF+QSRS+SLVDMYIDN+EPSENVGQIHFSLEYDF N+TLILR+
Sbjct: 125 QNKQLQNVK-GDHPSKAFLQSRSMSLVDMYIDNSEPSENVGQIHFSLEYDFQNTTLILRI 183

Query: 123 ISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQS 182
           I  K+LPAKD+SGTSDPYV+V LLPDKKHRLETKIKRRTLNPRWNET YFEGFPIQKLQS
Sbjct: 184 IQGKDLPAKDLSGTSDPYVRVTLLPDKKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQS 243

Query: 183 RVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP 242
           RVLHLHVFDYDRFSRDDSIGE+FLPLCQVD SEKP+FWKALKPPAKDKCGELL SLCYHP
Sbjct: 244 RVLHLHVFDYDRFSRDDSIGEMFLPLCQVDFSEKPSFWKALKPPAKDKCGELLCSLCYHP 303

Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
           SNSVLT+TLLKARNLKAKDINGKSDPYVKVWLQFG+KRIEKRKT IFKC LNPVFNE+FS
Sbjct: 304 SNSVLTLTLLKARNLKAKDINGKSDPYVKVWLQFGDKRIEKRKTPIFKCTLNPVFNEAFS 363

Query: 303 FNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIV 362
           FNVPWEKIRECSL+VMVMDFDNIGRNELIGRI LAGKNGSGASETKHWQDMITKPRQTIV
Sbjct: 364 FNVPWEKIRECSLDVMVMDFDNIGRNELIGRIQLAGKNGSGASETKHWQDMITKPRQTIV 423

Query: 363 QWHRLKPD 370
           QWHRLKP+
Sbjct: 424 QWHRLKPE 431

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709746|ref|XP_003393463.1| PREDICTED: synaptotagmin-7-like [Bombus terrestris]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 275/309 (88%), Positives = 294/309 (95%), Gaps = 1/309 (0%)

Query: 62  LHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILR 121
           + NK + NVK G+HPS AF+QSRS+SLVDMYIDN+EPSENVGQIHFSLEYDF N+TLILR
Sbjct: 107 VQNKQLQNVK-GDHPSKAFLQSRSMSLVDMYIDNSEPSENVGQIHFSLEYDFQNTTLILR 165

Query: 122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181
           +I  K+LPAKD+SGTSDPYV+V LLPDKKHRLETKIKRRTLNPRWNET YFEGFPIQKLQ
Sbjct: 166 IIQGKDLPAKDLSGTSDPYVRVTLLPDKKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQ 225

Query: 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYH 241
           SRVLHLHVFDYDRFSRDDSIGE+FLPLCQVD S+KP+FWKALKPPAKDKCGELL SLCYH
Sbjct: 226 SRVLHLHVFDYDRFSRDDSIGEMFLPLCQVDFSDKPSFWKALKPPAKDKCGELLCSLCYH 285

Query: 242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESF 301
           PSNSVLT+TLLKARNLKAKDINGKSDPYVKVWLQFG+KRIEKRKT IFKC LNPVFNE+F
Sbjct: 286 PSNSVLTLTLLKARNLKAKDINGKSDPYVKVWLQFGDKRIEKRKTPIFKCTLNPVFNEAF 345

Query: 302 SFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTI 361
           SFNVPWEKIRECSL+VMVMDFDNIGRNELIGRI LAGKNGSGASETKHWQDMITKPRQTI
Sbjct: 346 SFNVPWEKIRECSLDVMVMDFDNIGRNELIGRIQLAGKNGSGASETKHWQDMITKPRQTI 405

Query: 362 VQWHRLKPD 370
           VQWHRLKP+
Sbjct: 406 VQWHRLKPE 414

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623549|gb|EHJ74655.1| hypothetical protein KGM_07286 [Danaus plexippus]

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/292 (91%), Positives = 284/292 (97%)

Query: 79  AFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSD 138
           AF+Q+RS+SLVDMYIDNTEPSENVGQIHFSLEYDF N+TLILR+I  KELPAKD+SGTSD
Sbjct: 2   AFLQNRSISLVDMYIDNTEPSENVGQIHFSLEYDFQNTTLILRIIQGKELPAKDLSGTSD 61

Query: 139 PYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRD 198
           PYV+V LLPDKKHRLETKIKRRTLNPRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRD
Sbjct: 62  PYVRVTLLPDKKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRD 121

Query: 199 DSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLK 258
           DSIGEVFLPLCQVDLSEKP+FWK+LKPPAKDKCGELLTSLCYHPSNSVLT+TLLKARNLK
Sbjct: 122 DSIGEVFLPLCQVDLSEKPSFWKSLKPPAKDKCGELLTSLCYHPSNSVLTLTLLKARNLK 181

Query: 259 AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVM 318
           AKDINGKSDPYVKVWLQFG+KRIEKRKT +FKC LNPVFN+SFSFNVPWEKIRECSL+V 
Sbjct: 182 AKDINGKSDPYVKVWLQFGDKRIEKRKTAVFKCTLNPVFNDSFSFNVPWEKIRECSLDVQ 241

Query: 319 VMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370
           VMDFDNIGRNELIGRILLAGKNGSGA+ETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 242 VMDFDNIGRNELIGRILLAGKNGSGATETKHWQDMITKPRQTIVQWHRLKPE 293

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190357|gb|EFN74416.1| Synaptotagmin-7 [Camponotus floridanus]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/292 (91%), Positives = 282/292 (96%)

Query: 79  AFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSD 138
           AF+QSRS+SLVDMYIDN+EPSENVGQIHFSLEYDF NSTLILR+I  K+LPAKD+SGTSD
Sbjct: 19  AFLQSRSISLVDMYIDNSEPSENVGQIHFSLEYDFQNSTLILRIIQGKDLPAKDLSGTSD 78

Query: 139 PYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRD 198
           PYV+V LLPDKKHRLETKIKRRTLNPRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRD
Sbjct: 79  PYVRVTLLPDKKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRD 138

Query: 199 DSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLK 258
           DSIGE+FLPLCQVDLSEKP+FWKALKPPAKDKCGELL SLCYHPSNS+LT+TLLKARNLK
Sbjct: 139 DSIGEMFLPLCQVDLSEKPSFWKALKPPAKDKCGELLCSLCYHPSNSILTLTLLKARNLK 198

Query: 259 AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVM 318
           AKDINGKSDPYVKVWLQFG+KRIEKRKT IFKC LNPVFNE FSFNVPWEKIRECSL+VM
Sbjct: 199 AKDINGKSDPYVKVWLQFGDKRIEKRKTPIFKCTLNPVFNEVFSFNVPWEKIRECSLDVM 258

Query: 319 VMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370
           VMDFDNIGRNELIGRI LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 259 VMDFDNIGRNELIGRIQLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPE 310

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198246|gb|EFN79246.1| Synaptotagmin-7 [Harpegnathos saltator]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/292 (91%), Positives = 282/292 (96%)

Query: 79  AFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSD 138
           AF+QSRS+SLVDMYIDN+EPSENVGQIHFSLEYDF NSTLILR+I  K+LPAKD+SGTSD
Sbjct: 5   AFLQSRSISLVDMYIDNSEPSENVGQIHFSLEYDFQNSTLILRIIQGKDLPAKDLSGTSD 64

Query: 139 PYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRD 198
           PYV+V LLPDKKHRLETKIKRRTLNPRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRD
Sbjct: 65  PYVRVTLLPDKKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRD 124

Query: 199 DSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLK 258
           DSIGE+FLPLCQVDLSEKP+FWKALKPPAKDKCGELL SLCYHPSNS+LT+TLLKARNLK
Sbjct: 125 DSIGEMFLPLCQVDLSEKPSFWKALKPPAKDKCGELLCSLCYHPSNSILTLTLLKARNLK 184

Query: 259 AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVM 318
           AKDINGKSDPYVKVWLQFG+KRIEKRKT IFKC LNP+FNE FSFNVPWEKIRECSL+VM
Sbjct: 185 AKDINGKSDPYVKVWLQFGDKRIEKRKTPIFKCTLNPIFNEVFSFNVPWEKIRECSLDVM 244

Query: 319 VMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370
           VMDFDNIGRNELIGRI LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP+
Sbjct: 245 VMDFDNIGRNELIGRIQLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPE 296

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
FB|FBgn0039900	416	Syt7 "Syt7" [Drosophila melano	0.709	0.810	0.777	9.6e-144
UNIPROTKB|F1N4J4	689	Bt.56296 "Uncharacterized prot	0.562	0.387	0.590	3.4e-90
UNIPROTKB|F1Q293	685	SYT7 "Uncharacterized protein"	0.562	0.389	0.590	4.1e-88
UNIPROTKB|I3LEZ0	684	SYT7 "Uncharacterized protein"	0.562	0.390	0.590	4.1e-88
UNIPROTKB|F5GZC2	447	SYT7 "Synaptotagmin-7" [Homo s	0.562	0.597	0.586	5.3e-88
UNIPROTKB|F5H126	686	SYT7 "Synaptotagmin-7" [Homo s	0.562	0.389	0.586	5.3e-88
UNIPROTKB|F5H1N2	611	SYT7 "Synaptotagmin-7" [Homo s	0.562	0.436	0.586	5.3e-88
UNIPROTKB|F5H6C1	522	SYT7 "Synaptotagmin-7" [Homo s	0.562	0.511	0.586	5.3e-88
UNIPROTKB|O43581	403	SYT7 "Synaptotagmin-7" [Homo s	0.562	0.662	0.586	5.3e-88
MGI|MGI:1859545	403	Syt7 "synaptotagmin VII" [Mus	0.562	0.662	0.594	6.7e-88

FB|FBgn0039900 Syt7 "Syt7" [Drosophila melanogaster (taxid:7227)]

 Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
 Identities = 266/342 (77%), Positives = 293/342 (85%)

Query:    31 TTVDSNNSKSPVPGSSHAMEGAIASSSSST--PLHNKAVANVKAGEHPSSAFMQSRSVSL 88
             TT   NN    + G        I  S +S   P    +V N   G    SA   ++S+S+
Sbjct:    78 TTPLQNNINRKLNGFLSLRTPLIGGSGASQTKPQIISSVGNPGDGTTKDSA---NKSISM 134

Query:    89 VDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD 148
              DMY+D+T+PSENVGQIHFSLEYDF N+TLIL+V+  KELPAKD+SGTSDPYV+V LLPD
Sbjct:   135 TDMYLDSTDPSENVGQIHFSLEYDFQNTTLILKVLQGKELPAKDLSGTSDPYVRVTLLPD 194

Query:   149 KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
             KKHRLETKIKRRTLNPRWNET YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL
Sbjct:   195 KKHRLETKIKRRTLNPRWNETFYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 254

Query:   209 CQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDP 268
             CQVD + K +FWKALKPPAKDKCGELL+SLCYHPSNS+LT+TL+KARNLKAKDINGKSDP
Sbjct:   255 CQVDFAGKQSFWKALKPPAKDKCGELLSSLCYHPSNSILTLTLIKARNLKAKDINGKSDP 314

Query:   269 YVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRN 328
             YVKVWLQFG+KR+EKRKT IF C LNPVFNESFSFNVPWEKIRECSL+VMVMDFDNIGRN
Sbjct:   315 YVKVWLQFGDKRVEKRKTPIFTCTLNPVFNESFSFNVPWEKIRECSLDVMVMDFDNIGRN 374

Query:   329 ELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD 370
             ELIGRILLAGKNGSGASETKHWQDMI+KPRQT+VQWHRLKP+
Sbjct:   375 ELIGRILLAGKNGSGASETKHWQDMISKPRQTVVQWHRLKPE 416

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0005544 "calcium-dependent phospholipid binding" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=IEA;ISS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1N4J4 Bt.56296 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 880 (314.8 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
 Identities = 160/271 (59%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   420 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 479

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  RVL+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   480 KNLNPHWNETFLFEGFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 539

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   540 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 599

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   600 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 659

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   660 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 688

GO:0005764 "lysosome" evidence=IEA

GO:0001778 "plasma membrane repair" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1Q293 SYT7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 160/271 (59%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   416 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 475

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  RVL+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   476 KNLNPHWNETFLFEGFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 535

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   536 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 595

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   596 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 655

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   656 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 684

GO:0005764 "lysosome" evidence=IEA

GO:0001778 "plasma membrane repair" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|I3LEZ0 SYT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 160/271 (59%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   415 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 474

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  RVL+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   475 KNLNPHWNETFLFEGFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 534

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   535 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 594

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   595 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 654

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   655 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 683

GO:0005764 "lysosome" evidence=IEA

GO:0001778 "plasma membrane repair" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F5GZC2 SYT7 "Synaptotagmin-7" [Homo sapiens (taxid:9606)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 159/271 (58%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   178 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 237

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   238 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 297

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   298 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 357

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   358 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 417

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   418 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 446

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F5H126 SYT7 "Synaptotagmin-7" [Homo sapiens (taxid:9606)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 159/271 (58%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   417 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 476

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   477 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 536

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   537 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 596

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   597 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 656

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   657 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 685

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

UNIPROTKB|F5H1N2 SYT7 "Synaptotagmin-7" [Homo sapiens (taxid:9606)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 159/271 (58%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   342 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 401

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   402 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 461

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   462 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 521

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   522 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 581

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   582 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 610

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F5H6C1 SYT7 "Synaptotagmin-7" [Homo sapiens (taxid:9606)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 159/271 (58%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   253 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 312

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   313 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 372

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   373 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 432

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   433 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 492

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   493 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 521

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|O43581 SYT7 "Synaptotagmin-7" [Homo sapiens (taxid:9606)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 159/271 (58%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   134 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 193

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   194 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 253

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   254 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 313

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   314 DKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 373

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   374 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 402

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0001778 "plasma membrane repair" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0017158 "regulation of calcium ion-dependent exocytosis" evidence=IEA

GO:0050796 "regulation of insulin secretion" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

MGI|MGI:1859545 Syt7 "synaptotagmin VII" [Mus musculus (taxid:10090)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 161/271 (59%), Positives = 210/271 (77%)

Query:   100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
             EN+G+I FS+ Y+F  STL ++V+ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct:   134 ENLGRIQFSVGYNFQESTLTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 193

Query:   160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
             + LNP WNET  FEGFP +K+  RVL+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct:   194 KNLNPHWNETFLFEGFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 253

Query:   220 WKALKP--PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFG 277
             WK LKP        GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + 
Sbjct:   254 WKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 313

Query:   278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
             +KR+EK+KT   K NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+
Sbjct:   314 DKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 373

Query:   338 GKNGSGASETKHWQDMITKPRQTIVQWHRLK 368
              K+G G  E KHW+DMI +PRQ + QWH+LK
Sbjct:   374 WKSGPG--EVKHWKDMIARPRQPVAQWHQLK 402

GO:0001778 "plasma membrane repair" evidence=IDA

GO:0005215 "transporter activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005764 "lysosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017158 "regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0031045 "dense core granule" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050796 "regulation of insulin secretion" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43581	SYT7_HUMAN	No assigned EC number	0.5867	0.5621	0.6625	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	475
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-82
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	1e-77
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	4e-52
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	8e-51
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	1e-49
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	3e-48
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	6e-44
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-40
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-39
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	2e-36
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	3e-32
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	7e-31
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-30
pfam00168	85	pfam00168, C2, C2 domain	4e-30
cd00030	102	cd00030, C2, C2 domain	6e-30
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	4e-28
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-27
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-27
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	6e-26
pfam00168	85	pfam00168, C2, C2 domain	1e-25
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	1e-25
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	2e-25
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-23
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-23
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-23
cd00030	102	cd00030, C2, C2 domain	7e-23
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-22
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-22
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	3e-22
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	7e-22
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-21
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	4e-21
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	4e-21
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-21
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	9e-21
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-20
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	1e-20
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	5e-20
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	5e-20
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	7e-20
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	3e-19
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	4e-19
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-18
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	4e-18
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	6e-18
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	7e-18
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-17
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	6e-17
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	6e-17
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	2e-16
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-16
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	9e-16
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-15
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-15
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-15
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-15
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	6e-15
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	7e-15
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-14
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-14
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-14
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-14
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	5e-14
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	5e-14
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-13
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-13
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	3e-13
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	5e-13
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	8e-13
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-12
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-12
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-12
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-11
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-11
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-11
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-11
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-11
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	4e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-11
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	5e-11
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	1e-10
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-10
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	2e-10
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-10
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-10
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-10
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	5e-10
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-09
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	1e-09
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	1e-09
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-09
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	2e-09
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	2e-09
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	3e-09
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	3e-09
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-09
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-09
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	4e-09
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	4e-09
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	4e-09
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	6e-09
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	7e-09
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	8e-09
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-08
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-08
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	2e-08
cd08680	124	cd08680, C2_Kibra, C2 domain found in Human protei	2e-08
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	2e-08
cd08692	135	cd08692, C2B_Tac2-N, C2 domain second repeat found	3e-08
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	4e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	4e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	5e-08
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	6e-08
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	6e-08
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	7e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	7e-08
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-07
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	1e-07
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	1e-07
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	1e-07
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-07
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	2e-07
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	2e-07
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	3e-07
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	3e-07
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	3e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	9e-07
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-06
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	2e-06
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-06
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	4e-06
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	5e-06
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	5e-06
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	6e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-05
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	1e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-05
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-05
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	3e-05
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	3e-05
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	4e-05
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	4e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-05
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	8e-05
cd08691	137	cd08691, C2_NEDL1-like, C2 domain present in NEDL1	1e-04
cd08677	118	cd08677, C2A_Synaptotagmin-13, C2 domain	2e-04
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	3e-04
cd08680	124	cd08680, C2_Kibra, C2 domain found in Human protei	3e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	3e-04
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	4e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-04
pfam00665	113	pfam00665, rve, Integrase core domain	6e-04
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	7e-04
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	8e-04
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	0.001
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	0.002
cd08691	137	cd08691, C2_NEDL1-like, C2 domain present in NEDL1	0.003
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	0.003
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.004

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score =  250 bits (640), Expect = 2e-82
 Identities = 84/138 (60%), Positives = 107/138 (77%), Gaps = 2/138 (1%)

Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
            GELL SLCY+P+ + +T+ ++KARNLKA DING SDPYVKVWL + +KR+EK+KT I K
Sbjct: 1   RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK 60

Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350
             LNPVFNESF FN+P E++RE +L + VMD D + RN+LIG+I L  K  SG  E KHW
Sbjct: 61  RTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWK--SGGLELKHW 118

Query: 351 QDMITKPRQTIVQWHRLK 368
           +DM++KPRQ + QWHRLK
Sbjct: 119 KDMLSKPRQPVAQWHRLK 136

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score =  237 bits (608), Expect = 1e-77
 Identities = 86/125 (68%), Positives = 103/125 (82%)

Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR 160
           N+G+I FS+ YDF  STL L+++ A ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR+
Sbjct: 1   NLGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK 60

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
            LNP WNET  FEGFP +KLQ RVL+L V DYDRFSR+D IGEV LPL +VDL+E+ TFW
Sbjct: 61  NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFW 120

Query: 221 KALKP 225
           K LKP
Sbjct: 121 KDLKP 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score =  171 bits (437), Expect = 4e-52
 Identities = 70/136 (51%), Positives = 97/136 (71%), Gaps = 2/136 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GELL SL Y P+   LT+ +LKARNL   D  G SDPYVKV L  G K+++K+KT + K 
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG 60

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNPVFNE+FSF+VP E++ E SL + V+D D++GRNE+IG+++L G +  G  E +HW 
Sbjct: 61  TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL-GPDSGG-EELEHWN 118

Query: 352 DMITKPRQTIVQWHRL 367
           +M+  PR+ I +WH+L
Sbjct: 119 EMLASPRKPIARWHKL 134

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score =  168 bits (428), Expect = 8e-51
 Identities = 68/137 (49%), Positives = 97/137 (70%), Gaps = 2/137 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    KR++K+KT I K 
Sbjct: 2   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR 61

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNP +NESFSF VP+E+I++  L V V+D+D IG+N+ IG+++L G N +GA E +HW 
Sbjct: 62  TLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL-GCNATGA-ELRHWS 119

Query: 352 DMITKPRQTIVQWHRLK 368
           DM+  PR+ I QWH L+
Sbjct: 120 DMLASPRRPIAQWHTLQ 136

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score =  165 bits (419), Expect = 1e-49
 Identities = 63/125 (50%), Positives = 86/125 (68%), Gaps = 1/125 (0%)

Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR 160
            +G++ FSL+YDF ++ L + +I A +LPA DM GTSDPYVKV LLPDKK + ETK+ R+
Sbjct: 1   KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK 60

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           TLNP +NET  F+  P  +L ++ L   V+D+DRFS+ D IGEV +PL  VDL      W
Sbjct: 61  TLNPVFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEW 119

Query: 221 KALKP 225
           + L+ 
Sbjct: 120 RDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score =  161 bits (410), Expect = 3e-48
 Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 2/136 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GELL SLCY P+ + LT+ +LKAR+L   D++G +DPYVKV L +G+KRI K+KT + KC
Sbjct: 2   GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC 61

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNPVFNESF F++P E++ + S+  +V+D D + +NE+IGR++L  K         HW+
Sbjct: 62  TLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGH--HWK 119

Query: 352 DMITKPRQTIVQWHRL 367
           ++   PR+ I +WH L
Sbjct: 120 EVCNPPRRQIAEWHML 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score =  150 bits (381), Expect = 6e-44
 Identities = 67/136 (49%), Positives = 91/136 (66%), Gaps = 2/136 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GEL+ SLCY P+   LT+T++KARNLKA DI G SDPYVKV L    +R++K+KT + K 
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNP +NE+  F+VP E +   SL + V+D+D +G NELIG +   G N  G    +HW 
Sbjct: 61  TLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIG-VCRVGPNADGQGR-EHWN 118

Query: 352 DMITKPRQTIVQWHRL 367
           +M+  PR+ I QWH+L
Sbjct: 119 EMLANPRKPIAQWHQL 134

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score =  140 bits (356), Expect = 2e-40
 Identities = 51/124 (41%), Positives = 77/124 (62%), Gaps = 2/124 (1%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDM-SGTSDPYVKVALLPDKKHRLETKIKRRT 161
           G++ FS++YD +   L + +I A+ LP +       DP+VKV LLPD++  L++K+KR+T
Sbjct: 1   GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT 60

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
            NP ++ET  F+    ++LQ R L L V+D DRFSR   IG V  PL  +DL +    W+
Sbjct: 61  QNPNFDETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWR 119

Query: 222 ALKP 225
            L+P
Sbjct: 120 DLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score =  139 bits (351), Expect = 1e-39
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 1/117 (0%)

Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKR 159
            +G + FSL Y+ +   L++ +I  ++LPA D  SGTSDPYVK+ LLP+K+H+++T++ R
Sbjct: 1   KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR 60

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
           +T NP ++ET  F G P  +LQ   LH  V  +DR+SRDD IGEV  PL   DL  +
Sbjct: 61  KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score =  130 bits (328), Expect = 2e-36
 Identities = 59/123 (47%), Positives = 87/123 (70%), Gaps = 1/123 (0%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTL 162
           G++HFSLEYD D   L +++I A+ L  +D SGT+DPY KV LLPD+ +  ++KI ++TL
Sbjct: 3   GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTL 62

Query: 163 NPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKA 222
           NP ++E+  FE  P Q+L  R L + ++D+D+FSRD+ IG V LPL +VDLSEK   W+ 
Sbjct: 63  NPEFDESFVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRK 121

Query: 223 LKP 225
           ++ 
Sbjct: 122 IQS 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score =  119 bits (300), Expect = 3e-32
 Identities = 56/136 (41%), Positives = 81/136 (59%), Gaps = 1/136 (0%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GELL SL Y PS   L + +++A+ L   D++  SDP+VK+ L  G K I+ +KT   + 
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            ++P +NESFSF VP E++   SL   V   +    N+ IGRI++ G+  SG SET HW+
Sbjct: 61  TIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI-GQYSSGPSETNHWR 119

Query: 352 DMITKPRQTIVQWHRL 367
            M+   R  + QWH L
Sbjct: 120 RMLNSQRTAVEQWHSL 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score =  115 bits (291), Expect = 7e-31
 Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 1/136 (0%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G++  SL Y+P+ + LT+ +L+AR L+  D       YVKV L    K ++ +KT++   
Sbjct: 2   GDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHT-SVYVKVSLMIHNKVVKTKKTEVVDG 60

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
             +P FNESFSF V   ++   SL++ VM    + +++L+GR++L     +   E +HW 
Sbjct: 61  AASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWN 120

Query: 352 DMITKPRQTIVQWHRL 367
           DM++KP++ I +WH L
Sbjct: 121 DMLSKPKELIKRWHAL 136

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score =  112 bits (283), Expect = 2e-30
 Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 3/104 (2%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
           TL +++ISA+ LP KD  G SDPYVKV+L  D K + +TK+ + TLNP WNET  FE   
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE--- 57

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           +   +   L + V+D DRF RDD IG+V +PL  + L  +    
Sbjct: 58  VPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  111 bits (281), Expect = 4e-30
 Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 3/87 (3%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L + VISAK LP KD++G SDPYVKV+L   KK   +TK+ + TLNP WNET  FE   +
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFE---V 57

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEV 204
              +   L + V+DYDRF +DD IGEV
Sbjct: 58  TLPELAELRIEVYDYDRFGKDDFIGEV 84

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  112 bits (281), Expect = 6e-30
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 5/101 (4%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L + VI A+ LPAKD++G SDPYVKV+L   +K +  TK+ + TLNP WNET     FP+
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFK--TKVVKNTLNPVWNETFE---FPV 55

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
              +S  L + V+D DRFS+DD +GEV +PL ++  S K  
Sbjct: 56  LDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG 96

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score =  107 bits (270), Expect = 4e-28
 Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 3/119 (2%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP--DKKHRLETKIKRR 160
           G + F+L YD  NS L   +I AK L A D +G SDPYVK+ LLP   K  +L TK   +
Sbjct: 2   GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK 61

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           T NP +NETL + G   + +Q + L L V D DRF  +D +GE  +PL ++  ++   F
Sbjct: 62  TRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQF 119

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score =  106 bits (268), Expect = 1e-27
 Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRR 160
           G+I   L YD   S LI+ V+ A++LP +D     +PYVKV LLPD+  K +  TK  ++
Sbjct: 3   GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK 62

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP 217
           TLNP WN+T  +     + L+ R L + V+DYDR   +D +GEV + L    L ++P
Sbjct: 63  TLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEP 119

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score =  105 bits (264), Expect = 3e-27
 Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIF 289
           K G+L  SL Y   ++ LT+ +++A +L A D+ G SDPYVKV+L   +K+  K +T++ 
Sbjct: 1   KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKK--KFETKVH 58

Query: 290 KCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKH 349
           +  LNPVFNE+F+F VP+ ++   +L   V DFD   +++LIG + +          T+ 
Sbjct: 59  RKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEE 118

Query: 350 WQDMI 354
           W+D+ 
Sbjct: 119 WRDLE 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score =  101 bits (255), Expect = 6e-26
 Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKEL-PAKDMSGTSDPYVKVALLPDKKHR--LETKIKR 159
           G+I FSL Y++   +L + +   + L  A +    S+PYVKV LLPDK  +   +T +K+
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
            T NP +NETL +      +L++R L L V+ +DRF R+  +GEV +PL   DL  + + 
Sbjct: 61  NTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSE 119

Query: 220 WKAL 223
           W  L
Sbjct: 120 WYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 99.7 bits (249), Expect = 1e-25
 Identities = 39/88 (44%), Positives = 61/88 (69%), Gaps = 4/88 (4%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L +T++ A+NL  KD+NGKSDPYVKV L  G ++ + +KT++ K  LNPV+NE+F+F V 
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSL--GGQKKDTKKTKVVKNTLNPVWNETFTFEVT 58

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRI 334
             ++ E  L + V D+D  G+++ IG +
Sbjct: 59  LPELAE--LRIEVYDYDRFGKDDFIGEV 84

Length = 85

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score =  101 bits (253), Expect = 1e-25
 Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 2/137 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GE+L SL Y P+   LT+ ++KARNL   +    +DP+VKV+L    ++I K+KT + + 
Sbjct: 2   GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD 61

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
           + NP+FNE+  F+VP   +++ SL V V +    G+   +G +++ G   SG     HW 
Sbjct: 62  DTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVII-GPAASGMG-LSHWN 119

Query: 352 DMITKPRQTIVQWHRLK 368
            M+   R+ +  WH L+
Sbjct: 120 QMLASLRKPVAMWHPLR 136

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score =  100 bits (252), Expect = 2e-25
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 4/135 (2%)

Query: 234 LLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNL 293
           +L SL Y+     L + +++  NL A D NG SDP+VK++L+    +  K KTQ+ K  L
Sbjct: 2   ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTL 61

Query: 294 NPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR-NELIGRILLAGKNGSGASETKHWQD 352
           NP FNE F +++    + + +L + V D D IG+ N+ IG + L G N  G    +HW D
Sbjct: 62  NPEFNEEFFYDIKHSDLAKKTLEITVWDKD-IGKSNDYIGGLQL-GINAKGE-RLRHWLD 118

Query: 353 MITKPRQTIVQWHRL 367
            +  P + I  WH L
Sbjct: 119 CLKNPDKKIEAWHTL 133

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G +  S+ Y    S LT+ +LKA  L AKD +G SDP+VK++L   +K   K +T++ + 
Sbjct: 3   GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKH--KLETKVKRK 60

Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350
           NLNP +NE+F F   P+EK+++  L + V+D+D   RN+ IG + L         E   W
Sbjct: 61  NLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFW 120

Query: 351 QDM 353
           +D+
Sbjct: 121 KDL 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 94.1 bits (234), Expect = 2e-23
 Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 4/91 (4%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
            LT+ ++ ARNL  KD  GKSDPYVKV L       EK+KT++ K  LNPV+NE+F F V
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSL--DGDPKEKKKTKVVKNTLNPVWNETFEFEV 58

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           P  ++ E  L + V D D  GR++ IG++ +
Sbjct: 59  PPPELAE--LEIEVYDKDRFGRDDFIGQVTI 87

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 4/125 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKEL-PAKDMSGTSDPYVKVALLPDKKHR--LETKIKR 159
           G + F+L+YD     L + VI  ++L  A      SDPYVK  LLPDK +R   +T +K+
Sbjct: 2   GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK 61

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           +TLNP +NETL ++    ++L +RVL+L V+  D   R+  +GEV + L   D S     
Sbjct: 62  KTLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPT 120

Query: 220 WKALK 224
           W  L+
Sbjct: 121 WYPLQ 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 92.5 bits (230), Expect = 7e-23
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 6/90 (6%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L +T+++ARNL AKD+NGKSDPYVKV L       +K KT++ K  LNPV+NE+F F V 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL----GGKQKFKTKVVKNTLNPVWNETFEFPVL 56

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRILL 336
             +     L V V D D   +++ +G + +
Sbjct: 57  DPESDT--LTVEVWDKDRFSKDDFLGEVEI 84

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 5/108 (4%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETK---IKR 159
           G++  SL Y+   + + + +I A+ L A D++GTSDPYVKV L+   K R+E K   IK+
Sbjct: 2   GELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDK-RVEKKKTVIKK 60

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
           RTLNP +NE+  F   P+++L+   L + V D DR SR+D IG+++L 
Sbjct: 61  RTLNPVFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLG 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 92.5 bits (230), Expect = 2e-22
 Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLE---TKIKR 159
           G I FSL Y      L + ++ AK L   D+ G SDPYVK+ L+ + K RL+   T IK+
Sbjct: 2   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKK 60

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
           RTLNP +NE+  FE  P +++Q   L + V DYDR  ++D IG+V L
Sbjct: 61  RTLNPYYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 91.6 bits (228), Expect = 3e-22
 Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 7/125 (5%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTS-DPYVKVALLPD--KKHRLETKIKR 159
           GQ+  S+ Y   N TL + V+ AK LP  D  G+  DPYVK  LLPD  K  + +TK+ R
Sbjct: 2   GQVKLSISYK--NGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVR 57

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           +T NP +NE L ++G P++ LQ RVL + V+ +D    ++ +G V +PL ++DLS++   
Sbjct: 58  KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEK 117

Query: 220 WKALK 224
           W  L 
Sbjct: 118 WYPLG 122

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 90.9 bits (226), Expect = 7e-22
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKC 291
           ELL  L Y+     L++ ++K  N K   +N   D YVK+ L   + + I K KT I + 
Sbjct: 3   ELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG 62

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
             +P F E+F F V   ++ E +L   V +   + R E+IG   L G N SG  E +HW 
Sbjct: 63  QPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSL-GLNSSGEEEEEHWN 121

Query: 352 DMITKPRQTIVQWHRL 367
           +M     Q + +WH L
Sbjct: 122 EMKESKGQQVCRWHTL 137

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 90.1 bits (224), Expect = 1e-21
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 3/105 (2%)

Query: 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKIKRRT 161
           +I  SL Y+     LI+ +I    L A D +G SDP+VK+ L PD  KK + +T++K++T
Sbjct: 1   KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT 60

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
           LNP +NE  +++      L  + L + V+D D    +D IG + L
Sbjct: 61  LNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQL 104

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 88.8 bits (221), Expect = 4e-21
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 7/108 (6%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD----KKHRLETKIK 158
           G++  SL Y      L + V+ A+ LP  D  G SDPYVKV+LL      KK +  T +K
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKK--TSVK 58

Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
           + TLNP +NE   F+  P ++L+   L + V D D   R++ IG+V L
Sbjct: 59  KGTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 88.9 bits (220), Expect = 4e-21
 Identities = 49/139 (35%), Positives = 86/139 (61%), Gaps = 6/139 (4%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNL---KAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           GE+L S+ Y P+ + L + ++KA+NL   + K + G  D  VKV L+    +++K++T+ 
Sbjct: 2   GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGI-DVSVKVTLKHQNAKLKKKQTKR 60

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  +NPV+NE   F +P E +   S+ + V++ D+ G++  +GR  L G + SG +E +
Sbjct: 61  AKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSL-GLHTSG-TERQ 118

Query: 349 HWQDMITKPRQTIVQWHRL 367
           HW++M+  PR+ I  WH+L
Sbjct: 119 HWEEMLDNPRRQIAMWHQL 137

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 88.1 bits (219), Expect = 6e-21
 Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 3/90 (3%)

Query: 244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF 303
           ++ LT+ + +A+NL   D NG SDPYVK+ L    K   K+KT+  K  LNPV+NE+F+F
Sbjct: 12  DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTF 71

Query: 304 NV-PWEKIRECSLNVMVMDFDNIGRNELIG 332
           ++ P +K R   L++ V D+D   RN+ +G
Sbjct: 72  DLKPADKDR--RLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 87.3 bits (217), Expect = 9e-21
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 11/129 (8%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGK-SDPYVKVWLQFGEKRIE----KRKT 286
           G L  S+ Y      LT++L+KARNL  +  +    DP+VKV L   E+R      KRKT
Sbjct: 1   GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT 60

Query: 287 QIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASE 346
           Q      NP F+E+F F V +++++  +L + V D D   R+ +IG +L   K+      
Sbjct: 61  Q------NPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG 114

Query: 347 TKHWQDMIT 355
              W+D+  
Sbjct: 115 GVVWRDLEP 123

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRR 160
           G+I  ++ Y      LI+ V   + LP  D S   DPYV++ LLPDK    R +T +K+ 
Sbjct: 3   GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHV-FDYDRFSRD-DSIGEVFLPLCQVDLSEKPT 218
            LNP ++ET  F    +++L+ R L + V       SR+   +G+V + L  +DLS+  T
Sbjct: 63  NLNPVFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFT 121

Query: 219 FWKALK 224
            W  L 
Sbjct: 122 QWYDLT 127

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 41/101 (40%), Positives = 53/101 (52%), Gaps = 10/101 (9%)

Query: 239 CYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK--RIEKRKTQIFKCNLNPV 296
            Y  S   L + +L ARNL   D NG SDP+VKV L        +   KTQ+ K  L P+
Sbjct: 10  YYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPL 69

Query: 297 FNESFSFNVPWEKIRECSLNVM-----VMDFDNIGRNELIG 332
           F+ESF FNVP E   +CS+        V D+D +G N+  G
Sbjct: 70  FDESFEFNVPPE---QCSVEGALLLFTVKDYDLLGSNDFEG 107

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 85.5 bits (212), Expect = 5e-20
 Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GEL  SL Y     +L + L++ARNL+ +D +G +DPY KV L         ++++I K 
Sbjct: 3   GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNT--KQSKIHKK 60

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKN 340
            LNP F+ESF F VP +++ + +L V++ DFD   R+E IG + L    
Sbjct: 61  TLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAE 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 85.4 bits (212), Expect = 5e-20
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 6/102 (5%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLE--TKIKRR 160
           G+I+  +     ++ L + V  AK L   D +G SDPYVK+ L+PD K+  +  TK  ++
Sbjct: 2   GRIYLKISVK--DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK 59

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIG 202
           TLNP WNET  F+  P  K   R L + V+D+DR +R+D +G
Sbjct: 60  TLNPVWNETFTFDLKPADK--DRRLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 85.0 bits (211), Expect = 7e-20
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHR------LETK 156
           G +     Y     +L + +++A+ L   D +G+SDP+VKV LLP  +H        +T+
Sbjct: 3   GVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLP--RHLFPDVPTPKTQ 60

Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQ-SRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           +K++TL P ++E+  F   P Q      +L   V DYD    +D  GE FLPL  +
Sbjct: 61  VKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 14/133 (10%)

Query: 102 VGQIHFSLEYDFDNSTLILR------------VISAKELPAKDMSGTSDPYVKVALLPD- 148
            G++  +L+Y    S   L+            V  AK LPA    GTSD +VK  LLPD 
Sbjct: 1   RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60

Query: 149 -KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
            KK + +T + ++++NP WN T  ++G   + L    L L V+D+D+ S +D +G V L 
Sbjct: 61  SKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLG 120

Query: 208 LCQVDLSEKPTFW 220
           L       +   W
Sbjct: 121 LGTGKSYGQAVDW 133

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 82.6 bits (205), Expect = 4e-19
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 9/84 (10%)

Query: 252 LKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN--VPWEK 309
           ++ARNL+ KD NGKSDPY+K+ L  G+K+I  R   I    LNPVF + F     +P   
Sbjct: 7   VRARNLQPKDPNGKSDPYLKIKL--GKKKINDRDNYI-PNTLNPVFGKMFELEATLPGNS 63

Query: 310 IRECSLNVMVMDFDNIGRNELIGR 333
           I    L + VMD+D +G ++LIG 
Sbjct: 64  I----LKISVMDYDLLGSDDLIGE 83

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 6/103 (5%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L + VISA+ LP+ D +G SDP+VK  L  + +   +TK  ++TLNP WNE+      P+
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYL--NGEKVFKTKTIKKTLNPVWNESF---EVPV 55

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
                 VL + V+D+DR  +DD +G  ++ L  ++  E+ T  
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLE-PEETTEL 97

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 79.8 bits (197), Expect = 4e-18
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 4/124 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGT-SDPYVKVALLPDK--KHRLETKIKR 159
           G+I FSL YD+   +L + V   + L   D +   S+PYVK  LLPDK  + + +T IKR
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
            T NP +NETL +      +L++R L L V+ YDRF R+  +GEV +PL   +   +   
Sbjct: 62  NTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEE 120

Query: 220 WKAL 223
              L
Sbjct: 121 CLPL 124

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 79.2 bits (196), Expect = 6e-18
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
            L + +   + L A+D  GTSDPYVK       K   ++K   + LNP W+E       P
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKY--GGKTVYKSKTIYKNLNPVWDEKF---TLP 55

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
           I+ + ++ L++ VFDYDR   DD +G  F+ L  ++L  KPT
Sbjct: 56  IEDV-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLEL-NKPT 95

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 79.2 bits (196), Expect = 7e-18
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT 161
            G +  + EYD     L + VI A+++P KD  G S   V + LLP KK R +TK++R  
Sbjct: 2   CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRGP 61

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
            NP +NET  F     ++L +  L   ++  +R  ++  IGE  +PL Q++L  + T W 
Sbjct: 62  -NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWL 120

Query: 222 ALKP 225
            L+P
Sbjct: 121 TLEP 124

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 6/87 (6%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           LT+ ++ A NL + D NGKSDP+VK +L  GEK     KT+  K  LNPV+NESF   VP
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLN-GEKVF---KTKTIKKTLNPVWNESFEVPVP 56

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGR 333
             ++R   L V V D+D  G+++L+G 
Sbjct: 57  -SRVR-AVLKVEVYDWDRGGKDDLLGS 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 77.1 bits (190), Expect = 6e-17
 Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 3/106 (2%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRR 160
           G++  SL Y    + L + V+ A+ LP  D+SG +DPYVKV L   KK   + +T +K+ 
Sbjct: 2   GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC 61

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
           TLNP +NE+  F+  P ++L+   +   V D DR ++++ IG + L
Sbjct: 62  TLNPVFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 76.6 bits (189), Expect = 6e-17
 Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G L  +L Y P+NS L  T+++A+ LKA D NG SDPYVK+ L  G  +  K +T+    
Sbjct: 2   GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK 61

Query: 292 NLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIG--RILL 336
             NP FNE+ ++  +  E I+  +L ++V+D D  G N+ +G  RI L
Sbjct: 62  TRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPL 108

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 42/129 (32%), Positives = 75/129 (58%), Gaps = 6/129 (4%)

Query: 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQI 288
           K G L  SL Y+     L + +++ R+L A D  +G SDPYVK  LQ   ++  K KT++
Sbjct: 1   KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVK--LQLLPEKEHKVKTRV 58

Query: 289 FKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRIL--LAGKNGSGAS 345
            +   NPV++E+F+F  +P+ ++++ SL+  V+ FD   R+++IG ++  LAG +     
Sbjct: 59  LRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG 118

Query: 346 ETKHWQDMI 354
           E    +++ 
Sbjct: 119 ELLVSREIQ 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 237 SLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNP 295
           +L Y P    L + +++ ++L A D    +SDPYVK +L   +    KRKT + K  LNP
Sbjct: 7   ALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNP 66

Query: 296 VFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
           VFNE+  + V  E++    LN+ V   D++GRN  +G +
Sbjct: 67  VFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEV 105

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 73.7 bits (181), Expect = 9e-16
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 3/102 (2%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRR 160
           G++ FSL Y      L L +I A+ L A D++G SDPYVKV+L+ + +   + +T +K+ 
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIG 202
           TLNP +NE L F+  P + + +  L + V DYDR   ++ IG
Sbjct: 61  TLNPTYNEALVFD-VPPENVDNVSLIIAVVDYDRVGHNELIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 32/88 (36%), Positives = 52/88 (59%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G +  ++ Y      L +T+ K RNL   D +   DPYV+++L   + +  +RKT + K 
Sbjct: 3   GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMV 319
           NLNPVF+E+F F V  E+++  +L+V V
Sbjct: 63  NLNPVFDETFEFPVSLEELKRRTLDVAV 90

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 8/95 (8%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHR----LETKIKRRTLNPRWNETLYFE 173
           L ++V++  +L  KD+ G SDPYVK++L     +     ++TK  ++TLNP+WNE  +F 
Sbjct: 2   LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
             P    + R+L   VFD +R +RDD +G+V +PL
Sbjct: 62  VNPR---EHRLL-FEVFDENRLTRDDFLGQVEVPL 92

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 13/114 (11%)

Query: 118 LILRV--ISAKELPAKDMS--GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
            +LRV  + AK+L AKD S  G SDPY  +++      R +T+    TLNP+WN   Y+ 
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWN---YWC 54

Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV---DLSEKPTFWKALK 224
            FPI   Q+++L L ++D DRF+  D +GE  + L +V     + +   W  LK
Sbjct: 55  EFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLK 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G +   L Y    S L +T+L+AR+L  +D     +PYVKV+L        KR+T+  K 
Sbjct: 3   GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK 62

Query: 292 NLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
            LNP +N++F + NV  E ++E +L V V D+D  G N+ +G +++
Sbjct: 63  TLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVI 108

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 70.4 bits (173), Expect = 6e-15
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 13/107 (12%)

Query: 121 RVISAKELPAKD-MSGTSDPYVKVAL--LPDKKHRLETKIKRRTLNPRWN-ETLYFEGFP 176
           RV++A++LP  D  S  +D +V+V       K     T + +++LNP WN E   FE   
Sbjct: 4   RVVAARDLPVMDRSSDLTDAFVEVKFGSTTYK-----TDVVKKSLNPVWNSEWFRFE-VD 57

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFL---PLCQVDLSEKPTFW 220
            ++LQ   L + V D+D +S +D+IG+V++   PL   D   + + W
Sbjct: 58  DEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGW 104

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 72.0 bits (177), Expect = 7e-15
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 232 GELLTSLCY------------HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK 279
           GEL  +L Y             PS   L + + +A+NL A    G SD +VK +L   + 
Sbjct: 2   GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKS 61

Query: 280 RIEKRKTQIFKCNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAG 338
           +  K+KT + K ++NPV+N +F ++ V  E + +  L + V D D +  N+ +G + L  
Sbjct: 62  KKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGL 121

Query: 339 KNGSGASETKHWQD 352
             G    +   W D
Sbjct: 122 GTGKSYGQAVDWMD 135

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 9/107 (8%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L ++VI A  L A D+ G SDP+  + L+     RL+T    +TLNP WN+      FPI
Sbjct: 3   LQVKVIRASGLAAADIGGKSDPFCVLELVNA---RLQTHTIYKTLNPEWNKIF---TFPI 56

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224
           + +   VL + V+D D+  + + +G+V +PL  +   E+   W ALK
Sbjct: 57  KDIHD-VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYALK 100

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
           GE+  SL Y+     L + + + RNL   D    +S+PYVKV+L   + +  KRKT + K
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
              NPVFNE+  +++   ++   +L + V   D  GRN  +G + +
Sbjct: 61  NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEI 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 14/121 (11%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL-ETKIKRRTLNPRWNETLYFE--- 173
           L +RV+  ++L  K  +GT DP+ +V L    K     TK+K++T NPR++E  YFE   
Sbjct: 1   LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59

Query: 174 GFPIQKLQSRVLHLH---------VFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224
           GF  +K   +V             ++     S DD +GEV +PL  +  +     W  L+
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119

Query: 225 P 225
           P
Sbjct: 120 P 120

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 8/124 (6%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
            L   V+ A++L  KD +GTSDP+V+V         LET + +++  PRWNE   FE   
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFE--- 54

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP--PAKDKCGEL 234
           + +     L + V+D+D  S++D +G+V   +  +  +++   W  L P   A+++ G  
Sbjct: 55  LMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGN 114

Query: 235 LTSL 238
           L SL
Sbjct: 115 LGSL 118

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 8/91 (8%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L +RV+    L  +D   +SDPYV + L   K   ++T++ ++ LNP WNE L      +
Sbjct: 4   LKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLS---V 56

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
               +  L L VFD D FS+DDS+GE  + L
Sbjct: 57  PNPMA-PLKLEVFDKDTFSKDDSMGEAEIDL 86

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTS-DPYVKVALLPDKKH--RLETKIKR 159
           G+I F+L Y+F  S L + + + + L   D       PYVKV LLPDK H  + +T +K+
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
            T+NP +NETL +       L SR L + V+      R   +GEV +PL   D  +  +
Sbjct: 62  GTVNPVFNETLKYVVEADL-LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDS 119

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG-FPIQKL 180
           V+ A+ L  KD +G SDPY+K+ L   KK          TLNP + +    E   P   +
Sbjct: 6   VVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEATLPGNSI 64

Query: 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL 213
               L + V DYD    DD IGE       +DL
Sbjct: 65  ----LKISVMDYDLLGSDDLIGETV-----IDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L++ V+ A++L  KD  G+S  YV++     +K R  T+ K + LNP WNE L F     
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFD-GQKKR--TRTKPKDLNPVWNEKLVFNVSDP 58

Query: 178 QKLQSRVLHLHVFDYDRFSRDDS-IGEVFLPLCQV 211
            +L + VL ++V++  R  R  S +G V +     
Sbjct: 59  SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSF 93

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 65.7 bits (161), Expect = 3e-13
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 120 LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF-PIQ 178
           +RVI A++L      G  DP VKV +   KK+   T +K+ T  P +NE  +F       
Sbjct: 8   VRVIEARQLV----GGNIDPVVKVEVGGQKKY---TSVKKGTNCPFYNEYFFFNFHESPD 60

Query: 179 KLQSRVLHLHVFDYDRFSRDDSIGE 203
           +L  +++ + V+D      D  IG 
Sbjct: 61  ELFDKIIKISVYDSRSLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 33/117 (28%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPD----------KKHRLE------------- 154
           L + VI AK L AKD++G SDPY  + ++P           K+                 
Sbjct: 30  LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89

Query: 155 ---TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
              T++K +TLNP WNET  FE   ++ + +  LHL ++D+D    DD +G V +PL
Sbjct: 90  IKVTEVKPQTLNPVWNETFRFE---VEDVSNDQLHLDIWDHD----DDFLGCVNIPL 139

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 64.6 bits (158), Expect = 8e-13
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           V+TI L++ +NL   D NG SDPYVK   + G    EK K+++    LNP + E F  ++
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVK--FRLGN---EKYKSKVCSKTLNPQWLEQFDLHL 55

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGR 333
             ++ +   L + V D D   ++E IGR
Sbjct: 56  FDDQSQI--LEIEVWDKDTGKKDEFIGR 81

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 116 STLILRVISAKELPAKDM-SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG 174
             L++ +  A +LP  D  +G+SDPYV  +     K    T+I R+ LNP W ET +   
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 175 FPIQ-KLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP 217
            P + K   R L   ++D DRF+ DD +G V + L   +L E  
Sbjct: 61  TPDEVKAGER-LSCRLWDSDRFTADDRLGRVEIDL--KELIEDR 101

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 16/111 (14%)

Query: 122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ 181
           ++  K LP  D +G SDPYVK  L  +K    ++K+  +TLNP+W E      F     Q
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKY---KSKVCSKTLNPQWLEQFDLHLFDD---Q 59

Query: 182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP-----TFWKALKPPA 227
           S++L + V+D D   +D+ IG      C++DLS  P     +    L+   
Sbjct: 60  SQILEIEVWDKDTGKKDEFIG-----RCEIDLSALPREQTHSLELELEDGE 105

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 117 TLILRVISAKELPAKDMSGTSDPY--VKVALLPDKKHRLETKIKRRTLNPRWNE--TLYF 172
           +L +R++  K LPAKD++G+SDPY  VKV    D +  + T    +TLNP W E  T++ 
Sbjct: 1   SLYIRIVEGKNLPAKDITGSSDPYCIVKV----DNEVIIRTATVWKTLNPFWGEEYTVHL 56

Query: 173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
                       +  +V D D  SRDD IG+V L
Sbjct: 57  PPG------FHTVSFYVLDEDTLSRDDVIGKVSL 84

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 13/99 (13%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQ-IFKCNLNPVFNESFSFNV 305
           L + +++A  L A DI GKSDP+    L+    R+   +T  I+K  LNP +N+ F+F +
Sbjct: 3   LQVKVIRASGLAAADIGGKSDPFCV--LELVNARL---QTHTIYK-TLNPEWNKIFTFPI 56

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRI---LLAGKNG 341
             + I +  L V V D D   + E +G++   LL+ KNG
Sbjct: 57  --KDIHDV-LEVTVYDEDKDKKPEFLGKVAIPLLSIKNG 92

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 12/125 (9%)

Query: 122 VISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKL 180
           + SA+ L   D + GT DPYV  ++   ++    TK+K+ T NP WNET Y     +  L
Sbjct: 8   IKSARGLKGSDIIGGTVDPYVTFSISNRREL-ARTKVKKDTSNPVWNETKY---ILVNSL 63

Query: 181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF---WKALKPPAKDKCGELLTS 237
               L+L V+D++   +D  IG     L    L + P      K L    K   GEL   
Sbjct: 64  TE-PLNLTVYDFNDKRKDKLIGTAEFDLS--SLLQNPEQENLTKNLLRNGKPV-GELNYD 119

Query: 238 LCYHP 242
           L + P
Sbjct: 120 LRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVAL--LPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           L +RV+ A  +   D+  T D YV++ L    D+K R  TK  + ++NP WNET  F   
Sbjct: 2   LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKR--TKTIKNSINPVWNETFEFR-- 57

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
            IQ     VL L V D D    DD +G V   + ++ L EK
Sbjct: 58  -IQSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEK 96

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 7/77 (9%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L I L + RNL A+D  G SDPYVK   ++G K + K KT I+K NLNPV++E F+  + 
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKF--KYGGKTVYKSKT-IYK-NLNPVWDEKFTLPI- 56

Query: 307 WEKIRECSLNVMVMDFD 323
            E +    L + V D+D
Sbjct: 57  -EDV-TQPLYIKVFDYD 71

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 28/109 (25%)

Query: 119 ILR--VISAKELPAKDMS------GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETL 170
           +LR  VI A++L AKD        G SDPYV V +        ++K+ +  LNP+WNE  
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQT---FKSKVIKENLNPKWNE-- 56

Query: 171 YFEGF----PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215
            +E      P Q+L+     + +FD D   +DD +G        +DL  
Sbjct: 57  VYEAVVDEVPGQELE-----IELFDEDP-DKDDFLGR-----LSIDLGS 94

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 118 LILRVISAKELPA-KDMSGTS---DPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
           + + + S  +LP  K+M+ T    DP+V ++     +    T  +R TLNP +NE L FE
Sbjct: 3   VFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFE 59

Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
            +P +K  +  +   V D D+FS +D +    L +
Sbjct: 60  VYPHEK--NFDIQFKVLDKDKFSFNDYVATGSLSV 92

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 11/102 (10%)

Query: 236  TSLCYHPSNSV-----LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
              +   P   V     LTI L    NL + D NG SDP+VK++L   +      KT++ K
Sbjct: 1026 VPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN-EKS---VYKTKVVK 1081

Query: 291  CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
              LNPV+NE F+  V      +  L + V D+D+  +N+L+G
Sbjct: 1082 KTLNPVWNEEFTIEVLNRV--KDVLTINVNDWDSGEKNDLLG 1121

Length = 1227

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 59.6 bits (145), Expect = 5e-11
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           +LT+ +L+A N+   D+    D YV++WL       EK++T+  K ++NPV+NE+F F +
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRI 58

Query: 306 PWEKIRECSLNVMVMDFDNIGRNEL 330
             +   +  L + VMD D +  + L
Sbjct: 59  QSQ--VKNVLELTVMDEDYVMDDHL 81

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRR 160
           G++  SL Y      L + +I AK+L   DMS  SDP+VK+ L+   K     +T   R 
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
           T++P +NE+  F+  P ++L++  L   V+ ++  S +D IG + +
Sbjct: 61  TIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 123 ISAKELPAKDMSGTSDPYVKVALLPDKKHRL---ETKIKRRTLNPRWNETLYFEGFPIQK 179
            S K+L  KD  G SDP+++++   +    +    T++ + TLNP W     F   P+QK
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FT-IPLQK 62

Query: 180 L----QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           L      R + + V+DYD   + D IGE    L ++  S    F
Sbjct: 63  LCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEF 106

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLK-AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
           GE+L SL Y      L + + + RNL    +   +S+PYVK +L   + R  KRKT I +
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
              NPV+NE+  +++   ++   +L + V  +D  GRN  +G +
Sbjct: 62  NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEV 105

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 114  DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
            ++  L + + S + LP+ D +G SDP+VK+  L +K    +TK+ ++TLNP WNE   F 
Sbjct: 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKL-FLNEKSVY-KTKVVKKTLNPVWNEE--FT 1093

Query: 174  GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
               +      VL ++V D+D   ++D +G   + L +++     T   
Sbjct: 1094 -IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLE-PGGTTNSN 1139

Length = 1227

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 26/129 (20%)

Query: 125 AKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI----QKL 180
           A++L A D SG SDP+ +V+ L       ET++ + TL+P W++TL F+   +    +++
Sbjct: 10  ARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEI 66

Query: 181 QSR--VLHLHVFDYDRFSRDDSIGEVFL-PLCQVDLSEKPTFWKALKPPA---------K 228
                ++ + +FD D   +D+ +G     PL ++DL E         PP           
Sbjct: 67  AQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEED-------FPPKLQWFPIYKGG 119

Query: 229 DKCGELLTS 237
              GELL +
Sbjct: 120 QSAGELLAA 128

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 14/94 (14%)

Query: 246 VLTITLLKARNLKAKDIN------GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNE 299
           VL I +++A++L AKD        GKSDPYV V  + G    +  K+++ K NLNP +NE
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIV--RVGA---QTFKSKVIKENLNPKWNE 56

Query: 300 SFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGR 333
            +   V     +E  L + + D D   +++ +GR
Sbjct: 57  VYEAVVDEVPGQE--LEIELFDED-PDKDDFLGR 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
            G++  S+ Y   N  L + ++ A+NL   D     DPYVK +L    ++  KRKT++ +
Sbjct: 1   GGQVKLSISY--KNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR 57

Query: 291 CNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKH 349
              NP FNE   ++ +P E +++  L V V   D++  NE +G + +  K    + ET+ 
Sbjct: 58  KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEK 117

Query: 350 W 350
           W
Sbjct: 118 W 118

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L   +L+AR+L  KD NG SDP+V+V   +  + +E   T + K +  P +NE F F + 
Sbjct: 2   LRCHVLEARDLAPKDRNGTSDPFVRV--FYNGQTLE---TSVVKKSCYPRWNEVFEFELM 56

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350
             +  +  L+V V D+D + +N+ +G+++ + +    A + + W
Sbjct: 57  --EGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGW 98

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 252 LKARNLKAKDINGKSDPYVKVWLQFGEKR-IEKRKTQIFKCNLNPVFNESFSFNVPWEKI 310
              + L  KD  GKSDP++++  Q  +   +   +T++ K  LNPV+     F +P +K+
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63

Query: 311 ----RECSLNVMVMDFDNIGRNELIG 332
                +  + + V D+D+ G+++LIG
Sbjct: 64  CNGDYDRPIKIEVYDYDSSGKHDLIG 89

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAK-DMSGTSDPYVKVALLPDKK--HRLETKIKR 159
           G I   L        L + VI A+ L  K        PYVKV LL  KK   + +TKI R
Sbjct: 18  GDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR 75

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSE 215
           +TL+P + + L F+         + L + V+ DY R  +     +VF+ + Q+ L +
Sbjct: 76  KTLDPLYQQQLVFD----VSPTGKTLQVIVWGDYGRMDK-----KVFMGVAQILLDD 123

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 27/133 (20%)

Query: 247 LTITLLKARNLKAKDINGKSDPY--VKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
           L I +++ +NL AKDI G SDPY  VKV     +  +  R   ++K  LNP + E ++ +
Sbjct: 2   LYIRIVEGKNLPAKDITGSSDPYCIVKV-----DNEVIIRTATVWK-TLNPFWGEEYTVH 55

Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQW 364
           +P       +++  V+D D + R+++IG++ L              +++I+   + I  W
Sbjct: 56  LP---PGFHTVSFYVLDEDTLSRDDVIGKVSLT-------------REVISAHPRGIDGW 99

Query: 365 ---HRLKPDHEMQ 374
                + PD E+Q
Sbjct: 100 MNLTEVDPDEEVQ 112

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
           +L LR++ AK LP+K   GT DPY  V+L  D+     TK   + LNP W E   F+  P
Sbjct: 1   SLRLRILEAKNLPSK---GTRDPYCTVSL--DQVEVARTKTVEK-LNPFWGEEFVFDDPP 54

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFL---PLCQV 211
              +    L  +  D     RD  IG+V L    L Q 
Sbjct: 55  -PDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQG 91

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 11/89 (12%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           VL + + KA +LK  +  GK DPYV+V +      I K +T      LNPV++E     V
Sbjct: 2   VLRLHIRKANDLKNLEGVGKIDPYVRVLV----NGIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 306 --PWEKIRECSLNVMVMDFDNIGRNELIG 332
             P +KI      + VMD++ +G++  +G
Sbjct: 58  TSPNQKIT-----LEVMDYEKVGKDRSLG 81

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 13/117 (11%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKS---DPYVKVWLQFGEKRIEKRKTQI 288
           G++   L        L + +++AR L  K   G      PYVKV+L  G+K I K+KT+I
Sbjct: 18  GDIQLGLYD--KKGQLEVEVIRARGLVQK--PGSKVLPAPYVKVYLLEGKKCIAKKKTKI 73

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVM-DFDNIGRNELIG--RILLAGKNGS 342
            +  L+P++ +   F+V        +L V+V  D+  + +   +G  +ILL   + S
Sbjct: 74  ARKTLDPLYQQQLVFDV---SPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLS 127

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           + TI +++A NLKA   NG SDPYV +    G++RI K +T I+   LNP ++E F   V
Sbjct: 2   LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRT-IYD-TLNPRWDEEFELEV 59

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           P        ++  V D   +G+++L GR  L
Sbjct: 60  P--AGEPLWISATVWDRSFVGKHDLCGRASL 88

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
           + + V+ A+ L AKD +GTSDPYV V +   KK    TK   + LNP WNE  +FE
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKK---RTKTIPQNLNPVWNEKFHFE 55

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 252 LKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI- 310
           +  +NL      GK D   KV       R  K+KT++ +  LNPV+NE+F + +      
Sbjct: 3   VSLKNLPGL--KGKGDRIAKV-----TFRGVKKKTRVLENELNPVWNETFEWPL-AGSPD 54

Query: 311 RECSLNVMVMDFDNIGRNELIG 332
            + SL ++V D++ +GRN LIG
Sbjct: 55  PDESLEIVVKDYEKVGRNRLIG 76

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 247 LTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFN-ESFSFN 304
           L + ++ AR+L   D  +  +D +V+V  +FG       KT + K +LNPV+N E F F 
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEV--KFGST---TYKTDVVKKSLNPVWNSEWFRFE 55

Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           V  E++++  L + VMD D    N+ IG++ +
Sbjct: 56  VDDEELQDEPLQIRVMDHDTYSANDAIGKVYI 87

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 17/95 (17%)

Query: 246 VLTITLLKARNLKAKDINGKS-DPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESF--- 301
           VL +T+  AR LK  DI G + DPYV   +     R E  +T++ K   NPV+NE+    
Sbjct: 3   VLAVTIKSARGLKGSDIIGGTVDPYVTFSI---SNRRELARTKVKKDTSNPVWNETKYIL 59

Query: 302 --SFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
             S   P        LN+ V DF++  +++LIG  
Sbjct: 60  VNSLTEP--------LNLTVYDFNDKRKDKLIGTA 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 53.7 bits (130), Expect = 4e-09
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L + + SAK LP    +    PYV++  +       ++K+K RT NP W E   F    +
Sbjct: 2   LFVYLDSAKNLPLAKSTKEPSPYVEL-TVGKTTQ--KSKVKERTNNPVWEEGFTF--L-V 55

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV----DLSEKPTF 219
           +  +++ L + V D        S+G + LPL ++    DL+    F
Sbjct: 56  RNPENQELEIEVKDDK---TGKSLGSLTLPLSELLKEPDLTLDQPF 98

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)

Query: 118 LILRVISAKELPAKDMS--GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           + +++ SA+ L   D +  GT DPY+ V      +   +T++K+ TLNP WNET Y    
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTF--SDRVIGKTRVKKNTLNPVWNETFY---I 492

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD--KCGE 233
            +       L+L ++D++ F  D  +G   L L    L + P     L    ++    G 
Sbjct: 493 LLNSFTDP-LNLSLYDFNSFKSDKVVGSTQLDL--ALLHQNPVKKNELYEFLRNTKNVGR 549

Query: 234 LLTSLCYHPSNSVLTITLLKARNLKAKDIN 263
           L   L + P   +     LK      +D N
Sbjct: 550 LTYDLRFFP--VIEDKKELKGSVEPLEDSN 577

Length = 1227

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 53.4 bits (129), Expect = 7e-09
 Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 4/104 (3%)

Query: 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIF 289
           KCG+L  +  Y PS   LT+T+++A+++  KD  G S   V + L   +K  ++ KT++ 
Sbjct: 1   KCGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQ 58

Query: 290 KCNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIG 332
           +   NPVFNE+F+F+ V  E++   +L   +   + + +  LIG
Sbjct: 59  RGP-NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIG 101

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 53.4 bits (129), Expect = 8e-09
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 120 LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL-ETKIKRRTLNPRWNETLYFEGFPIQ 178
           +R++ A+ L A   +G SDPYV   +  + K R+ +T+    TLNPRW+E   FE   + 
Sbjct: 5   IRIVRAENLKADSSNGLSDPYV-TLVDTNGKRRIAKTRTIYDTLNPRWDEE--FE-LEVP 60

Query: 179 KLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
             +   +   V+D     + D  G   L L
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKL 90

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 21/143 (14%)

Query: 246 VLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF 303
           VL + +++A++L AKD    GKSDPY  + +  G +R    KTQ     LNP +N  +  
Sbjct: 2   VLRVHVVEAKDLAAKDRSGKGKSDPYAILSV--GAQRF---KTQTIPNTLNPKWN--YWC 54

Query: 304 NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQ 363
             P    +   L +++ D D     + +G   +A +      +T               +
Sbjct: 55  EFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKT-----------GQSDK 103

Query: 364 WHRLKPDHEMQTFLQSVGVSHIR 386
           W  LK     +T + S G  H++
Sbjct: 104 WITLKSTRPGKTSVVS-GEIHLQ 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 249 ITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV--- 305
           + +++AR L      G  DP VKV  + G    +K+ T + K    P +NE F FN    
Sbjct: 8   VRVIEARQLV----GGNIDPVVKV--EVGG---QKKYTSVKKGTNCPFYNEYFFFNFHES 58

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIG 332
           P E + +  + + V D  ++  + LIG
Sbjct: 59  PDE-LFDKIIKISVYDSRSLRSDTLIG 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF 303
           ++IT++ A+ L AKD  G SDPYV V  Q G+    K++T+    NLNPV+NE F F
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTV--QVGKT---KKRTKTIPQNLNPVWNEKFHF 54

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKIKR 159
           VG+I  SL Y      L + V+ A+ L   +   T+DP+VKV LL D  K  + +T +KR
Sbjct: 1   VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR 60

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
              NP +NE + F   P   LQ   L + V +     +  ++G V +
Sbjct: 61  DDTNPIFNEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVII 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 238 LCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNL---- 293
           L Y   +S L I++ + RNL A  I   S  YV+V L           + +F+       
Sbjct: 7   LRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSST----SCLFRTKALEDQ 62

Query: 294 -NPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG--RILLAGKNGSGASETKHW 350
             PVFNE F   +   K+ + +L V V       + E +G  +I LA    S    TK W
Sbjct: 63  DKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTK-W 121

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 29/124 (23%)

Query: 117 TLILRVISAKELPAKD---MSGT-----------SDPYVKVALLPDKKHRLETKIKRRTL 162
             I ++  A++LP  D   M+              DPYV+V+       +++T +K+ + 
Sbjct: 1   RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSY 57

Query: 163 NPRWNETLYF-EGFP--IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK--- 216
           NP WNE + F E FP   ++++     + + D+DR   DD IG  F+ L ++  S     
Sbjct: 58  NPEWNEQIVFPEMFPPLCERIK-----IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGF 112

Query: 217 -PTF 219
            PTF
Sbjct: 113 LPTF 116

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176074 cd08692, C2B_Tac2-N, C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 3/136 (2%)

Query: 233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCN 292
           EL    C+   NS + + +L+A+NL +         +VKV +      + K+KT++ K +
Sbjct: 2   ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSS 61

Query: 293 LNPV-FNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
              V + E+  F V  ++       + +    ++ R   +G++ ++  + S +   + W+
Sbjct: 62  NGQVKWGETMIFPVT-QQEHGIQFLIKLYSRSSVRRKHFLGQVWIS-SDSSSSEAVEQWK 119

Query: 352 DMITKPRQTIVQWHRL 367
           D I  P + + +WH L
Sbjct: 120 DTIANPEKVVTKWHSL 135

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 135

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L++ ++  ++L   + +G SDPY +V++   ++H+  TK+   TLNP+WN ++ F    +
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEVSM-GSQEHK--TKVVSDTLNPKWNSSMQFF---V 70

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIG 202
           + L+  VL + VFD D FS DD +G
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLG 95

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKI-KRRTLNPRWNETLYFE-G 174
           TL + +ISAK L   D  G  DPYV   ++  +    ++K+ K    NP WNE   F   
Sbjct: 2   TLEVLLISAKGLQDTDFLGKIDPYV---IIQCRTQERKSKVAKGDGRNPEWNEKFKFTVE 58

Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV--DLSEKPTFWKALKPPAKDKCG 232
           +P     ++ L L + D D FS DD IGE  + L  +  +  E  T   A   PAK    
Sbjct: 59  YPGWGGDTK-LILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGT---AELVPAKYNVV 114

Query: 233 E 233
            
Sbjct: 115 L 115

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 247 LTITLLKARNL-KAKDINGKS-DPYVKVWLQFGEKRIE--KRKTQIFKCN-LNPVFNESF 301
           LTI ++  + L K K   G   DPYV+V +  G    +  K KT++ K N  NPV+NE+F
Sbjct: 4   LTIKIISGQQLPKPKGDKGSIVDPYVEVEI-HGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 302 SFNVPWEKIRECS-LNVMVMDFDNIGRNELIG 332
            F+V    + E + L  +V D ++ G ++ +G
Sbjct: 63  EFDV---TVPELAFLRFVVYD-EDSGDDDFLG 90

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 120 LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK 179
           L +  A +L   +  G  DPYV+V +    K R  T     TLNP W+E LY    P+  
Sbjct: 5   LHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGR--TVTISNTLNPVWDEVLY---VPVTS 59

Query: 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
              ++  L V DY++  +D S+G V + +
Sbjct: 60  PNQKIT-LEVMDYEKVGKDRSLGSVEINV 87

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 252 LKARNLKAKDINGKSDPYVKVWLQFGEKR--IEKRKTQIFKCNLNPVFNESFSFNVPWEK 309
           +  RNL  KD+  KSDP+V V+++ G     +E  +T++ K NLNP F  +F+ +  +E+
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 310 IRECSLNVMVMDFDN 324
           +++  L   V D D+
Sbjct: 67  VQK--LRFEVYDVDS 79

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV- 305
           L++ +L+ R+L  K  NG  DP+ +V L +  K   KR     K N NP F+E+F F + 
Sbjct: 1   LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTN-NPRFDEAFYFELT 58

Query: 306 ------------PWEKIRECSLNVMVMDFDNIGRNELIGRI 334
                         E + +  L V +     +  ++ +G +
Sbjct: 59  IGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEV 99

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 117 TLILRVISAKELP--AKDMSGTSDPYVKVALL---PDKKHRLETK-IKRRTLNPRWNETL 170
           TL +++IS ++LP    D     DPYV+V +     D   + +TK +K    NP WNET 
Sbjct: 3   TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62

Query: 171 YFEG-FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
            F+   P    +   L   V+D D    DD +G+  LPL
Sbjct: 63  EFDVTVP----ELAFLRFVVYDEDSG-DDDFLGQACLPL 96

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQ--FGEKRIEKRKTQIFKCNLNPVFNESFSF 303
           +L + +L   +L  KDI G SDPYVK+ L    G   I+  +T+  K  LNP +NE F F
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 304 NVPWEKIRECSLNVMVMDFDNIGRNELIG 332
            V     RE  L   V D + + R++ +G
Sbjct: 61  RV---NPREHRLLFEVFDENRLTRDDFLG 86

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKS-DPYVKVWLQFGEKRIEKRKTQIFK 290
           GE+  +L Y+   S L IT+   RNL   D   K   PYVKV L   +    KRKT + K
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61

Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
             +NPVFNE+  + V  + +    L V V     + R   +G +L+
Sbjct: 62  GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLI 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 26/102 (25%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRK-------------------- 285
           VL +T+++A+ L AKD+NG SDPY  + +    +     K                    
Sbjct: 29  VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88

Query: 286 ----TQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD 323
               T++    LNPV+NE+F F V  E +    L++ + D D
Sbjct: 89  SIKVTEVKPQTLNPVWNETFRFEV--EDVSNDQLHLDIWDHD 128

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
           TL++ V+ A+ LP K      DPY  + +    K + +T   R   +P W+E L FE   
Sbjct: 2   TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTK-KTKT-DFRGGQHPEWDEELRFEITE 59

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215
            +K    +L + VFD D   + D IG+      +VDLS 
Sbjct: 60  DKK---PILKVAVFD-DDKRKPDLIGD-----TEVDLSP 89

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 14/102 (13%)

Query: 117 TLILRVISAKELPAKDMSGTS--DPYVKVALLPDKKHRLETKI--KRRTLNPRWNETLYF 172
           TL + +ISA++L  K+++       Y  V +  D  H+  T +     T NP WNETL F
Sbjct: 1   TLEITIISAEDL--KNVNLFGKMKVYAVVWI--DPSHKQSTPVDRDGGT-NPTWNETLRF 55

Query: 173 ---EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
              E    Q      L + V+       D  IGEV +PL  +
Sbjct: 56  PLDERLLQQ--GRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALL-PDKKHRLE-TKIKRRTLNPRWNETLYFE 173
           L +RVI   +L  K  +GT DPY  V L+  +KK   + TK+K++T NP+++E  YF+
Sbjct: 2   LSVRVIECSDLALK--NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD 57

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G+L  S+     N  LT+ +L+A+ L++ + +G  + YVK+ L   ++   ++KT     
Sbjct: 1   GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD 57

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
           + NP+F+E+FSF+V     ++  L  +         + L+G
Sbjct: 58  SANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLG 98

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLE--TKIKRR 160
           GQ+  S+E    N  L L V+ AK L + + SGT + YVK++L PDK+ R    T     
Sbjct: 1   GQLKLSIEGQ--NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD 57

Query: 161 TLNPRWNETLYFEGFPIQKLQS-RVLHLHVFDYDRFSRDDSI 201
           + NP ++ET     F + +    + L + V++    SRD  +
Sbjct: 58  SANPLFHETFS---FDVNERDYQKRLLVTVWNKLSKSRDSGL 96

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNE--TLYFEGFPIQK 179
           V+ A+ L  K  SGT+D YV + L  +K     T +K +T +P W E  +    G     
Sbjct: 5   VLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGN 61

Query: 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL--SEKPTFWKAL--KPPAKDKC-GEL 234
                L L V   +    D  +G+V +PL  +D     + T W  L  KP   DK  GE+
Sbjct: 62  GNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEI 121

Query: 235 LTSL 238
              +
Sbjct: 122 EVDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L +RV+ A+ LPA     ++DP V+V L     ++  TK   RT NP WN+   F     
Sbjct: 2   LYVRVVKARGLPA----NSNDPVVEVKLGN---YKGSTKAIERTSNPEWNQVFAFSK--- 51

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
            +LQ   L + V+D       D   + FL     DLSE PT
Sbjct: 52  DRLQGSTLEVSVWD------KDKAKDDFLGGVCFDLSEVPT 86

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 51.3 bits (123), Expect = 9e-07
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 246 VLTITLLKARNLKAKD--INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF 303
           V+ + +  A  LK  D  ING  DPY+              KT++ K  LNPV+NE+F  
Sbjct: 437 VVEVKIKSAEGLKKSDSTINGTVDPYI----TVTFSDRVIGKTRVKKNTLNPVWNETFY- 491

Query: 304 NVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
            +      +  LN+ + DF++   ++++G   L
Sbjct: 492 -ILLNSFTD-PLNLSLYDFNSFKSDKVVGSTQL 522

Length = 1227

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 245 SVLTITLLKARNLKAKDIN-GKSDPYVKV-WLQFGEKRIEKRKTQIFKCNLNPVFNES-F 301
            VL +T+ +A +L   D   G SDPYV   + +FG+       T+I + +LNPV+ E+ F
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPL---YSTRIIRKDLNPVWEETWF 57

Query: 302 SFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
               P E      L+  + D D    ++ +GR+ +
Sbjct: 58  VLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEI 92

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)

Query: 123 ISAKELPAKDM----SGTSDPYVKVAL----LPDKKHRLETKIKRRTLNPRWNETLYFEG 174
           ++ K + A D+    +G   P+V+V L    L DKK +  TK K    +P++NET  F  
Sbjct: 2   VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFIL 61

Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDS-IGEVFLPL 208
                 +S  LH+ V DY  F+RDD  +G   L L
Sbjct: 62  GNEDDPESYELHICVKDY-CFARDDRLVGVTVLQL 95

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK-- 179
           V+S K LP     G  D   KV     KK   +T++    LNP WNET  FE +P+    
Sbjct: 2   VVSLKNLPGLK--GKGDRIAKVTFRGVKK---KTRVLENELNPVWNET--FE-WPLAGSP 53

Query: 180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
                L + V DY++  R+  IG   + L  +
Sbjct: 54  DPDESLEIVVKDYEKVGRNRLIGSATVSLQDL 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFN 304
            L + L+ A+ L+  D  GK DPYV   +Q   +   +RK+++ K    NP +NE F F 
Sbjct: 2   TLEVLLISAKGLQDTDFLGKIDPYVI--IQCRTQ---ERKSKVAKGDGRNPEWNEKFKFT 56

Query: 305 VP---WEKIRECSLNVMVMDFDNIGRNELIG 332
           V    W    +  L + +MD DN   ++ IG
Sbjct: 57  VEYPGWGGDTK--LILRIMDKDNFSDDDFIG 85

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 249 ITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP-- 306
           +T+L+AR L  K  +G +D YV +  Q G+   EK  T + +   +PV+ E  SF +P  
Sbjct: 3   VTVLQARGLLCKGKSGTNDAYVII--QLGK---EKYSTSVKEKTTSPVWKEECSFELPGL 57

Query: 307 -WEKIRECSLNVMVMDFDNIGRNELIGRI 334
                   +L + VM  + +G ++ +G++
Sbjct: 58  LSGNGNRATLQLTVMHRNLLGLDKFLGQV 86

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 117 TLILRVISAKELPA-KDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           +L +++  AK LP     +   D Y  V L  D++    TK   ++L P + E  YFE  
Sbjct: 1   SLKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQEEVFRTKTVEKSLCPFFGEDFYFE-I 57

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEV 204
           P      R L  +++D D   RD  IG+V
Sbjct: 58  PRT---FRHLSFYIYDRDVLRRDSVIGKV 83

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI-FKCNLNPVFNESFSFNV 305
           L IT++ A +LK  ++ GK   Y  VW+        K+ T +      NP +NE+  F +
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWI-DPSH---KQSTPVDRDGGTNPTWNETLRFPL 57

Query: 306 PWEKIREC--SLNVMVMDFDNIGRNELIG--RILLA 337
               +++   +L + V        ++LIG  R+ L 
Sbjct: 58  DERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLK 93

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           +L + +++  NL  +D    SDPYV + L  G    +K KT++ K NLNPV+NE  + +V
Sbjct: 3   LLKVRVVRGTNLAVRDFTS-SDPYVVLTL--GN---QKVKTRVIKKNLNPVWNEELTLSV 56

Query: 306 P 306
           P
Sbjct: 57  P 57

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI--EKRKTQ-IFKCNLNPVFNESFSF 303
           L + +LKARNL  K    K DPY  +       RI    +KT+  F+   +P ++E   F
Sbjct: 3   LVVVVLKARNLPNKRKLDKQDPYCVL-------RIGGVTKKTKTDFRGGQHPEWDEELRF 55

Query: 304 NVPWEKIRECSLNVMVMDFDNIGRNELIGR 333
            +  +K  +  L V V D D+  + +LIG 
Sbjct: 56  EITEDK--KPILKVAVFD-DDKRKPDLIGD 82

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRK--TQIFKCNLNPVFNESFS 302
            V  + +  A  L  +D  G +DPYV +       + E     + + K  L+P F+    
Sbjct: 3   VVTQVHVHSAEGLSKQDSGGGADPYVII-------KCEGESVRSPVQKDTLSPEFDTQAI 55

Query: 303 F 303
           F
Sbjct: 56  F 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           LT+T+L+A  L   D    +D YVKV+    EKR     T++   N NP +N +F F   
Sbjct: 30  LTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKR-----TEVIWNNNNPRWNATFDFG-- 81

Query: 307 WEKIRECS-LNVMVMDFDNIGRNELIGR 333
             ++     L   V D DN   ++L+G 
Sbjct: 82  SVELSPGGKLRFEVWDRDNGWDDDLLGT 109

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L + +++ R+LK  + NGKSDPY +V    G +     KT++    LNP +N S  F V 
Sbjct: 17  LMVVIVEGRDLKPCNSNGKSDPYCEV--SMGSQE---HKTKVVSDTLNPKWNSSMQFFV- 70

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGR-------ILLAGKNGSG 343
            + + +  L + V D D    ++ +GR       IL   K   G
Sbjct: 71  -KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKG 113

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 120 LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK 179
           L V+ A  L  +D+    DP+  + +   + H   T + ++TL+P+WNE      F +  
Sbjct: 4   LTVLCADGLAKRDLFRLPDPFAVITVDGGQTH--STDVAKKTLDPKWNEH-----FDLTV 56

Query: 180 LQSRVLHLHVFDYDRFSRDDS 200
             S ++ + VFD  +F + D 
Sbjct: 57  GPSSIITIQVFDQKKFKKKDQ 77

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 123 ISAKELPAKDMSGTSDPYVKVALLPDKKHRLE----TKIKRRTLNPRWNETLYFE-GFP- 176
           IS + L  KD+   SDP+V V +      +      T++ +  LNP +  T   +  F  
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDS----IGEVFLPLCQV 211
           +QKL+       V+D D  S+D S    +GE    L ++
Sbjct: 67  VQKLR-----FEVYDVDSKSKDLSDHDFLGEAECTLGEI 100

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L++ +++  +L  K  NG  DPY  V L +  K+ + ++T++ K   NP F+E+F F+V 
Sbjct: 2   LSVRVIECSDLALK--NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 90  DMYIDNT-EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD 148
            ++I N  +P  N G       YD     + + V  A +L  +   G SDPY  V +   
Sbjct: 684 RIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNL 743

Query: 149 KKHRLETKIKRRTLNPRWNETLYFEGF-PIQKLQSRVLHLHVFDYDRFSRDDSIGEV 204
            K+R        TLNP WNE LY       Q+L      L   DY+    D ++GEV
Sbjct: 744 VKYRTIYGSS--TLNPIWNEILYVPVTSKNQRLT-----LECMDYEESGDDRNLGEV 793

Length = 1227

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV- 305
           L + ++ A++L  KD  G S  YV++   F  ++  KR     K +LNPV+NE   FNV 
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVEL--DFDGQK--KRTRTKPK-DLNPVWNEKLVFNVS 56

Query: 306 -PWEKIRECSLNVMVMDFDNIGR-NELIGRILLAGKNGSGASE 346
            P  ++    L V V +    GR    +GR+ ++G +    SE
Sbjct: 57  DP-SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSE 98

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176073 cd08691, C2_NEDL1-like, C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 18/87 (20%)

Query: 131 KDMSGTSDPYVKVALLPDKKH----------RLETKIKRRTLNPRW-NETLYFEGFPIQK 179
           K M    DPYVK+++ P K+H             T I   T+NP W  E   F G P   
Sbjct: 15  KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--- 71

Query: 180 LQSRVLHLHVFDYDRFSRDDSIGEVFL 206
             + VL + V   D+F++   I   FL
Sbjct: 72  --TDVLEIEV--KDKFAKSRPIIRRFL 94

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 137

>gnl|CDD|176059 cd08677, C2A_Synaptotagmin-13, C2 domain

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVK--VALLPDKKHRLETKIKRRT 161
           ++H+SL YD   + L + ++ A+ +    +    + Y+   V++   +K   +T +K+  
Sbjct: 2   KLHYSLSYDKQKAELHVNILEAENI---SVDAGCECYISGCVSVSEGQKEA-QTALKKLA 57

Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           L+ +W E L F   P ++     L L +   DRFSR  ++GE+ L L  V
Sbjct: 58  LHTQWEEELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADV 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This CD contains the first C2 repeat, C2A, and has a type-I topology. Length = 118

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L + +L+A+NL +K   G  DPY  V L   +  + + KT      LNP + E F F+ P
Sbjct: 2   LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKT---VEKLNPFWGEEFVFDDP 53

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRILL 336
              +   +L+    D  +  R+ +IG++ L
Sbjct: 54  PPDVTFFTLSFYNKDKRSKDRDIVIGKVAL 83

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP-DKKHRL--ETKIKRR 160
           Q+   L YD  +S+L++ V   + L A  +   S  YV+VALLP          TK    
Sbjct: 2   QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED 61

Query: 161 TLNPRWNETLYFEGFPIQ----KLQSRVLHLHV 189
              P +NE      F +     KL  + L + V
Sbjct: 62  QDKPVFNEV-----FRVPISSTKLYQKTLQVDV 89

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           S L + V SAK           DPYV+V +  D +   +T++ ++T NP+WNE      F
Sbjct: 2   SQLQITVESAKLKSNSKSFKP-DPYVEVTV--DGQPPKKTEVSKKTSNPKWNEH-----F 53

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
            +       L   V+ +     D  +GE  L L  +
Sbjct: 54  TVLVTPQSTLEFKVWSHHTLKADVLLGEASLDLSDI 89

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 267 DPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV-PWEKIRECSLNVMVMDFDNI 325
           DP+V +   FG +     +T   +  LNPVFNE  +F V P EK     +   V+D D  
Sbjct: 27  DPFVII--SFGRRVF---RTSWRRHTLNPVFNERLAFEVYPHEK--NFDIQFKVLDKDKF 79

Query: 326 GRNELIGRI 334
             N+ +   
Sbjct: 80  SFNDYVATG 88

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 126 KEL-PAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRV 184
           K L  ++  +G   PY ++ L  + K    T++K++T NP WN +   E     + +SRV
Sbjct: 1   KGLDTSESKTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNAS--TEFLVTDRRKSRV 56

Query: 185 LHLHVFDYDRFSRDDSIGEVFLPL 208
             + V D DR   D  +G V + L
Sbjct: 57  T-VVVKD-DRDRHDPVLGSVSISL 78

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|216050 pfam00665, rve, Integrase core domain

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFL 409
              Q  L+ +G+ H      +P  NG  E     +K  L
Sbjct: 75  KAFQELLKELGIKHSFSRPGNPQDNGVVERFNRTLKEEL 113

Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. Length = 113

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 14/70 (20%)

Query: 267 DPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW----EKIRECSLNVMVMDF 322
           DPYV+V   F  +   K KT + K + NP +NE   F   +    E+I+     + + D+
Sbjct: 36  DPYVEVS--FAGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK-----IQIRDW 85

Query: 323 DNIGRNELIG 332
           D +G +++IG
Sbjct: 86  DRVGNDDVIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 12/87 (13%)

Query: 254 ARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN--VPWEKIR 311
           AR+L A D +G SDP+ +V   F  +  E   T++ K  L+P ++++  F+    +    
Sbjct: 10  ARDLLAADKSGLSDPFARV--SFLNQSQE---TEVIKETLSPTWDQTLIFDEVELYGSPE 64

Query: 312 ECSLN-----VMVMDFDNIGRNELIGR 333
           E + N     V + D D++G++E +GR
Sbjct: 65  EIAQNPPLVVVELFDQDSVGKDEFLGR 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L + ++KAR L A      +DP V+V L  G     K  T+  +   NP +N+ F+F+  
Sbjct: 2   LYVRVVKARGLPA----NSNDPVVEVKL--GNY---KGSTKAIERTSNPEWNQVFAFSK- 51

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRI 334
            ++++  +L V V D D    ++ +G +
Sbjct: 52  -DRLQGSTLEVSVWDKDKAK-DDFLGGV 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 19/98 (19%)

Query: 122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKI-KRRTLNPRWNETLYF------EG 174
           VI A++L   D +   + +VK  L       L T+  + R  NP WNE L F      E 
Sbjct: 6   VIEAQDLVPSDKNRVPEVFVKAQLGN---QVLRTRPSQTRNGNPSWNEELMFVAAEPFED 62

Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
             I  ++ RV           ++D+ +G   +PL  ++
Sbjct: 63  HLILSVEDRVGP---------NKDEPLGRAVIPLNDIE 91

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176073 cd08691, C2_NEDL1-like, C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI--------EKRKTQIFKCNLNPVF 297
             +++ L+ARNLK K +    DPYVK+ +Q G++ I        ++ +T I +  +NPV+
Sbjct: 2   SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVW 60

Query: 298 -NESFSF 303
             E F F
Sbjct: 61  HREQFVF 67

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 137

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
           S L IT+  A  LK+   + K DPYV+V +  G+     +KT++ K   NP +NE F+  
Sbjct: 2   SQLQITVESA-KLKSNSKSFKPDPYVEVTVD-GQ---PPKKTEVSKKTSNPKWNEHFTVL 56

Query: 305 V-PWEKIRECSLNVMVMDFDNIGRNELIG 332
           V P        L   V     +  + L+G
Sbjct: 57  VTPQST-----LEFKVWSHHTLKADVLLG 80

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 35/132 (26%), Positives = 49/132 (37%), Gaps = 31/132 (23%)

Query: 115 NSTLILRVISAKEL----------PAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNP 164
             TL +++  A +L            K  S   DPYV + +  D  H  +T  K +T +P
Sbjct: 3   TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV--DDTHIGKTSTKPKTNSP 60

Query: 165 RWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGE-VFLPLCQVDL-------SEK 216
            WNE      F  +    R L L VF       D +IG   F+  C +         S  
Sbjct: 61  VWNEE-----FTTEVHNGRNLELTVF------HDAAIGPDDFVANCTISFEDLIQRGSGS 109

Query: 217 PTFWKALKPPAK 228
              W  L+P  K
Sbjct: 110 FDLWVDLEPQGK 121

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	475
KOG1028|consensus	421		100.0
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.95
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.95
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.95
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.94
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.93
PLN02230	598	phosphoinositide phospholipase C 4	99.93
PLN02223	537	phosphoinositide phospholipase C	99.93
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.93
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.93
KOG0169|consensus	746		99.92
KOG1013|consensus	362		99.92
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.92
PLN02952	599	phosphoinositide phospholipase C	99.92
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.92
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.92
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.91
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.91
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.91
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.91
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.91
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.91
PLN02222	581	phosphoinositide phospholipase C 2	99.91
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.91
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.91
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.91
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.91
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.91
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.9
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.9
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.9
KOG2059|consensus	800		99.9
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.9
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.89
PLN02228	567	Phosphoinositide phospholipase C	99.89
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.89
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.89
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.89
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.89
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.89
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.89
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.89
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.89
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.88
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.88
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.88
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.87
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.87
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.87
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.87
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.86
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.86
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.86
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.86
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.86
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.86
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.85
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.85
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.85
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.85
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.84
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.84
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.84
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.84
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.84
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.84
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.84
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.84
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.84
KOG1264|consensus	1267		99.84
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.84
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.83
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.83
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.83
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.83
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.83
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.83
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.82
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.82
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.82
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.82
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.82
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.81
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.8
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.8
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.8
KOG1030|consensus	168		99.79
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.79
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.79
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.78
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.78
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.78
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.78
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.78
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.78
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.78
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.77
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.77
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.77
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.77
KOG0696|consensus	683		99.76
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.76
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.76
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.75
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.75
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.75
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.74
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.74
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.74
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.74
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.74
KOG0696|consensus	683		99.74
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.74
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.74
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.73
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.73
KOG1028|consensus	421		99.72
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.72
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.71
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.71
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.7
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.7
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.7
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.7
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.7
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.69
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.69
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.69
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.68
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.68
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.68
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.68
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.68
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.67
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.67
KOG1265|consensus	1189		99.66
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.66
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.66
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.66
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.66
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.65
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.65
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.65
PLN03008	868	Phospholipase D delta	99.64
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.64
KOG1030|consensus	168		99.64
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.64
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.64
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.63
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.63
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.63
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.63
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.62
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.62
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.62
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.61
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.61
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.61
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.61
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.6
KOG1327|consensus	529		99.59
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.59
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.59
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.59
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.59
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.59
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.58
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.58
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.58
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.58
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.58
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.58
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.57
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.57
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.56
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.56
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.56
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.56
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.55
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.55
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.54
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.54
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.54
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.51
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.51
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.51
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.51
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.5
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.49
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.48
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.47
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.47
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.45
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.44
PLN03008	868	Phospholipase D delta	99.44
KOG1326|consensus	1105		99.44
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.42
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.42
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.38
KOG0905|consensus	1639		99.33
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.3
KOG1011|consensus	1283		99.29
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.28
KOG1326|consensus	1105		99.28
KOG1328|consensus	1103		99.27
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.25
KOG0905|consensus	1639		99.23
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.22
PLN02270	808	phospholipase D alpha	99.19
KOG2059|consensus	800		99.15
KOG1328|consensus	1103		99.09
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.09
KOG1013|consensus	362		99.07
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.07
KOG1011|consensus	1283		99.06
PLN02223	537	phosphoinositide phospholipase C	99.01
PLN02270	808	phospholipase D alpha	98.96
KOG1327|consensus	529		98.95
KOG1031|consensus	1169		98.93
PLN02230	598	phosphoinositide phospholipase C 4	98.89
PLN02952	599	phosphoinositide phospholipase C	98.87
PLN02222	581	phosphoinositide phospholipase C 2	98.83
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.82
smart00149	115	PLCYc Phospholipase C, catalytic domain (part); do	98.81
KOG0169|consensus	746		98.77
KOG1031|consensus	1169		98.77
KOG2060|consensus	405		98.74
PLN02228	567	Phosphoinositide phospholipase C	98.74
PF00387	118	PI-PLC-Y: Phosphatidylinositol-specific phospholip	98.67
PLN02352	758	phospholipase D epsilon	98.67
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.65
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.57
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.5
KOG1264|consensus	1267		98.49
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.48
KOG2060|consensus	405		98.39
PLN02352	758	phospholipase D epsilon	98.19
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.11
PLN02964	644	phosphatidylserine decarboxylase	97.74
PHA02517	277	putative transposase OrfB; Reviewed	97.65
PF13683	67	rve_3: Integrase core domain	97.64
KOG3837|consensus	523		97.45
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	97.28
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.12
PRK09409	301	IS2 transposase TnpB; Reviewed	97.07
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.01
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.95
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.84
PF15627	156	CEP76-C2: CEP76 C2 domain	96.8
PLN02964	644	phosphatidylserine decarboxylase	96.77
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.57
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.55
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.51
PF15627	156	CEP76-C2: CEP76 C2 domain	96.42
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.37
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.25
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.95
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.85
KOG1265|consensus	1189		95.84
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	95.78
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.77
cd08595	257	PI-PLCc_zeta Catalytic domain of metazoan phosphoi	95.53
cd08597	260	PI-PLCc_PRIP_metazoa Catalytic domain of metazoan	95.47
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.45
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.38
cd08630	258	PI-PLCc_delta3 Catalytic domain of metazoan phosph	95.36
cd08633	254	PI-PLCc_eta2 Catalytic domain of metazoan phosphoi	95.05
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	95.01
cd08626	257	PI-PLCc_beta4 Catalytic domain of metazoan phospho	94.99
cd08632	253	PI-PLCc_eta1 Catalytic domain of metazoan phosphoi	94.95
KOG3837|consensus	523		94.95
cd08629	258	PI-PLCc_delta1 Catalytic domain of metazoan phosph	94.88
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	94.69
cd08628	254	PI-PLCc_gamma2 Catalytic domain of metazoan phosph	94.66
cd08596	254	PI-PLCc_epsilon Catalytic domain of metazoan phosp	94.64
cd08631	258	PI-PLCc_delta4 Catalytic domain of metazoan phosph	94.47
cd08591	257	PI-PLCc_beta Catalytic domain of metazoan phosphoi	94.45
cd08592	229	PI-PLCc_gamma Catalytic domain of metazoan phospho	94.3
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.28
cd08594	227	PI-PLCc_eta Catalytic domain of metazoan phosphoin	94.21
cd08625	258	PI-PLCc_beta3 Catalytic domain of metazoan phospho	94.1
cd08624	261	PI-PLCc_beta2 Catalytic domain of metazoan phospho	93.96
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	93.93
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.88
cd08593	257	PI-PLCc_delta Catalytic domain of metazoan phospho	93.68
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	93.53
cd08599	228	PI-PLCc_plant Catalytic domain of plant phosphatid	93.47
cd08623	258	PI-PLCc_beta1 Catalytic domain of metazoan phospho	93.47
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	93.43
cd08558	226	PI-PLCc_eukaryota Catalytic domain of eukaryotic p	93.26
KOG1452|consensus	442		93.03
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.91
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	92.62
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	92.35
cd08627	229	PI-PLCc_gamma1 Catalytic domain of metazoan phosph	92.23
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	91.78
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	91.5
cd08598	231	PI-PLC1c_yeast Catalytic domain of putative yeast	90.9
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	90.45
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	90.26
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	89.12
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	85.58
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	84.3
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	82.38
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	82.11
KOG1452|consensus	442		81.67
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	81.42
COG2826	318	Tra8 Transposase and inactivated derivatives, IS30	81.12

>KOG1028|consensus

Probab=100.00  E-value=2.4e-45  Score=365.79  Aligned_cols=269  Identities=54%  Similarity=0.933  Sum_probs=250.5

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      .....|+|++++.|+.....|.|+|++|++|+.++..|.+||||+++++|+.+.+.+|++.++++||+|||+|.|. |+.
T Consensus       149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~-v~~  227 (421)
T KOG1028|consen  149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE-VPY  227 (421)
T ss_pred             cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-cCH
Confidence            3466899999999999999999999999999999977889999999999999889999999999999999999999 888


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC---CcccceeeeeeecCCceeEEEEEEee
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK---DKCGELLTSLCYHPSNSVLTITLLKA  254 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~---~~~G~l~l~l~~~~~~~~L~v~v~~a  254 (475)
                      +++....|.+.|||+|+++++++||++.++|..+........|.+|.+...   ...|+|.++++|.|..+.|.|.|++|
T Consensus       228 ~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~ka  307 (421)
T KOG1028|consen  228 EELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKA  307 (421)
T ss_pred             HHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEe
Confidence            889999999999999999999999999999999988887889999987532   33389999999999999999999999


Q ss_pred             ccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEE
Q psy15955        255 RNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI  334 (475)
Q Consensus       255 ~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~  334 (475)
                      ++|...+..+.+||||++++..+++...+++|.+.+++.||+|||+|.|.|+.+.+++..|.|+|||++.++++++||.+
T Consensus       308 r~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~  387 (421)
T KOG1028|consen  308 RNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRC  387 (421)
T ss_pred             cCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEE
Confidence            99999999999999999999988888889999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        335 LLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       335 ~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      .+....  .+.+..||.+|++.|++.+..||.|..
T Consensus       388 ~lG~~~--~~~~~~hW~~m~~~p~~pv~~wh~l~~  420 (421)
T KOG1028|consen  388 ILGSDS--TGEEVRHWQEMLNSPRKPVAQWHSLRS  420 (421)
T ss_pred             EecCCC--CchHHHHHHHHHhCccCceeeeEeccc
Confidence            996643  456789999999999999999999864

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.95  E-value=4.3e-28  Score=204.87  Aligned_cols=136  Identities=32%  Similarity=0.592  Sum_probs=125.7

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      .|+|.++++|.|..+.|.|.|++|+||+..+.  .+.+||||+|++.+++++..++||++++++.||+|||+|.|.|+.+
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~   80 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE   80 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence            38999999999999999999999999999883  3458999999999888777889999999999999999999999999


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      ++.+..|.|+|||++.++++++||++.+++.  +.+++.+||.+|+..|++.+..||.|.
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~--~~g~~~~hW~~ml~~p~~~va~WH~L~  138 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLH--TSGTERQHWEEMLDNPRRQIAMWHQLH  138 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCc--CCCcHHHHHHHHHhCCCCchhEEEECC
Confidence            9999999999999999999999999999885  366789999999999999999999884

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.95  E-value=1.8e-27  Score=197.81  Aligned_cols=134  Identities=22%  Similarity=0.438  Sum_probs=121.3

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCC-CCeecceEEEeeccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNL-NPVFNESFSFNVPWEKI  310 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~~l  310 (475)
                      ++|+++++|.|..++|.|.|++|+||++.+..+..||||+|++.++++...++||++++++. ||.|||+|.|+|+.++ 
T Consensus         1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-   79 (135)
T cd08692           1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-   79 (135)
T ss_pred             CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-
Confidence            47999999999999999999999999988666778999999999988888899999999995 6999999999999765 


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL  367 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L  367 (475)
                      .+..|.|+|||++..+++++||++.++... .++++.+||.+|+..|++.+++||.|
T Consensus        80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~-~~~~~~~hW~~m~~~pr~~ia~WH~L  135 (135)
T cd08692          80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDS-SSSEAVEQWKDTIANPEKVVTKWHSL  135 (135)
T ss_pred             heeEEEEEEEeCCCCcCCceEEEEEECCcc-CCchhhhhHHHHHhCCCCeeeEeecC
Confidence            467899999999999999999999997754 45567899999999999999999986

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.95  E-value=2.3e-27  Score=200.78  Aligned_cols=135  Identities=33%  Similarity=0.622  Sum_probs=125.7

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      |+|.++++|.+..+.|.|+|++|+||+..+..|.+||||++++.++++...+++|++++++.||+|||+|.|.|+.+++.
T Consensus         2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~   81 (136)
T cd08406           2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ   81 (136)
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence            89999999999999999999999999999988999999999999887776788999999999999999999999988898


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      +..|.|+|||++..+++++||++.|+..  +.+.+.+||.+|+..|++.+..||.|.
T Consensus        82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v~~WH~l~  136 (136)
T cd08406          82 DLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPVAMWHPLR  136 (136)
T ss_pred             CcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCeeeEeeecC
Confidence            9999999999999999999999999654  456788999999999999999999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.94  E-value=3.6e-26  Score=194.76  Aligned_cols=136  Identities=35%  Similarity=0.643  Sum_probs=127.0

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      .|+|++++.|.+..+.|.|.|++|+||+..+ .+.+||||++++.++++...+++|++++++.||.|||+|.|.++.+++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l   79 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL   79 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence            4899999999999999999999999999988 788999999999887766667899999999999999999999998888


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL  367 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L  367 (475)
                      .+..|.|+|||++..+++++||++.|+....+.+++.+||.+|+..|++.++.||.|
T Consensus        80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l  136 (137)
T cd08409          80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL  136 (137)
T ss_pred             CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence            888999999999999999999999998777777889999999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.93  E-value=1e-25  Score=182.84  Aligned_cols=117  Identities=26%  Similarity=0.495  Sum_probs=106.8

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD-KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ  181 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~  181 (475)
                      |+|++++.|+...+.|.|+|++|++|+   ..|.+||||+|++.++ +..+.+|+++++|+||+|||+|.|. ++.+++.
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~   76 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-LPEEESL   76 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe-CCHHHhC
Confidence            579999999999999999999999999   2466999999999864 4457799999999999999999999 8999999


Q ss_pred             cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955        182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL  223 (475)
Q Consensus       182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L  223 (475)
                      ...|.|+|||+|+++++++||++.++++++..+....+|.+|
T Consensus        77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            999999999999999999999999999998778788889765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.93  E-value=5.5e-26  Score=230.76  Aligned_cols=204  Identities=22%  Similarity=0.227  Sum_probs=147.7

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeee
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDM   91 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~   91 (475)
                      .=++++++++||||+|+|+||||++|...|...+..++.+=++.   +....++|..||+||||+||+||+..+.+... 
T Consensus       380 ~v~~nk~~L~RIYPkG~RvdSSNynP~~~W~~GcQMVALN~Qt~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~~~-  458 (598)
T PLN02230        380 VIRFTQKNFLRIYPKGTRFNSSNYKPQIGWMSGAQMIAFNMQGYGRALWLMEGMFRANGGCGYVKKPDFLMDAGPNGQD-  458 (598)
T ss_pred             HHHhhhhhceeeCCCCCcCCCCCCCchhHhcCceEEeeecccCCChHHHhhcchhccCCCCCceECCHHhcCCCccccc-
Confidence            34789999999999999999999999877544444433332221   22344889999999999999999875422111 


Q ss_pred             EeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCC------CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCC
Q psy15955         92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAK------DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLN  163 (475)
Q Consensus        92 ~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~n  163 (475)
                       .++..+.             ....+|.|+|+++.+|+..      +....+||||+|.+.  |.+..+.+|++..+++|
T Consensus       459 -fdP~~~~-------------~~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~n  524 (598)
T PLN02230        459 -FYPKDNS-------------CPKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWT  524 (598)
T ss_pred             -cCCCcCC-------------CcCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCC
Confidence             1121111             1245799999999987521      234568999999995  34555678999999999


Q ss_pred             ceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeee
Q psy15955        164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLC  239 (475)
Q Consensus       164 P~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~  239 (475)
                      |+|||+|.|. +.+.+  -+.|+|+|+|+|..++++|+|++++|+..|..|-.   ..+|....+..  ...|.+.+.
T Consensus       525 P~Wneef~F~-l~vPE--LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~  596 (598)
T PLN02230        525 PIWNKEFIFP-LAVPE--LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFE  596 (598)
T ss_pred             CccCCeeEEE-EEcCc--eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEE
Confidence            9999999998 44444  46999999999988899999999999999976533   56776655542  234444443

>PLN02223 phosphoinositide phospholipase C

Probab=99.93  E-value=8e-26  Score=225.08  Aligned_cols=201  Identities=16%  Similarity=0.185  Sum_probs=147.8

Q ss_pred             HHHhhhhhhhcccCcc-ccCCCCCCCCCCCCCCCCCcccCCC---CCCcccccccccCCCCCCCCcccccccccceeeeE
Q psy15955         17 RFLSQSVAQLETAGTT-VDSNNSKSPVPGSSHAMEGAIASSS---SSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMY   92 (475)
Q Consensus        17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~   92 (475)
                      +|+++.++|+||+|+| +||||++|...|...+...+.+=++   .++...++|..||+||||+||+||+..+.+.   .
T Consensus       322 ~ft~~~l~RiYPkG~R~~dSSNYnP~~~W~~GcQmVALN~QT~d~~M~LN~G~F~~NG~CGYVLKP~~Lr~~~~~~---~  398 (537)
T PLN02223        322 SFTQKKFLRTRPKKKNLLINAPYKPQRAWMHGAQLIALSRKDDKEKLWLMQGMFRANGGCGYVKKPDFLLNAGPSG---V  398 (537)
T ss_pred             hhcccceEEECCCCCccccCCCCCChhhcccceeEeeeccCCCChhHHhhcchhccCCCCCceECChhhccCCccc---c
Confidence            6899999999999999 5999999988755544444433333   2334558899999999999999998754321   1


Q ss_pred             eCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCCce
Q psy15955         93 IDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAK-----DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLNPR  165 (475)
Q Consensus        93 ~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~-----~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~nP~  165 (475)
                      .++....             .....|.|+|++|++|+..     +....+||||+|.+.  |.+..+++|.+..|++||+
T Consensus       399 FdP~~~~-------------~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPv  465 (537)
T PLN02223        399 FYPTENP-------------VVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPT  465 (537)
T ss_pred             cCCCCCc-------------ccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCce
Confidence            1221111             0245799999999998521     234578999999995  3455567888999999999


Q ss_pred             eeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeee
Q psy15955        166 WNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLC  239 (475)
Q Consensus       166 w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~  239 (475)
                      |||+|.|. +.+.  ..+.|+|+|+|+|..++++|+|++++|+..|..|-   .+.+|....+..  ...|.+.+.
T Consensus       466 Wne~F~F~-i~~P--ELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~  535 (537)
T PLN02223        466 WGEEFTFP-LTYP--DLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFK  535 (537)
T ss_pred             ecceeEEE-EEcc--CceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEE
Confidence            99999998 4444  45689999999998888999999999999997664   466777665543  234444443

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.93  E-value=1.9e-25  Score=181.21  Aligned_cols=118  Identities=21%  Similarity=0.353  Sum_probs=106.4

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      |+|+++++|.+..+.|.|+|++|++|+   ..|.+||||++++.++++ ..+++|+++++|+||+|||+|.|.|+.+++.
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~   76 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESL   76 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence            579999999999999999999999998   246699999999976554 3467999999999999999999999999999


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      +..|.|+|||+|+++++++||++.+++.+..-+.+.++|.++
T Consensus        77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            999999999999999999999999999877666678889764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.93  E-value=3.3e-25  Score=188.50  Aligned_cols=136  Identities=32%  Similarity=0.527  Sum_probs=123.3

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCc-eeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      |+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.++. +...+++|++++++.||+|||+|.|.++.+++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l   81 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL   81 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence            78999999999999999999999999999999999999999998753 44567899999999999999999999998888


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      .+..|.|+|||++.++++++||++.+++. ..+.++.+||.+|+..|++.+..||.|.
T Consensus        82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~-~~~~~~~~hW~~~l~~~~~~v~~WH~l~  138 (138)
T cd08408          82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLN-SSGEEEEEHWNEMKESKGQQVCRWHTLL  138 (138)
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEECCc-CCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence            88999999999999999999999999774 3334567899999999999999999873

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG0169|consensus

Probab=99.92  E-value=1.8e-25  Score=226.14  Aligned_cols=198  Identities=22%  Similarity=0.308  Sum_probs=149.3

Q ss_pred             HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCCCc-------ccccccccCCCCCCCCcccccccccce
Q psy15955         16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTP-------LHNKAVANVKAGEHPSSAFMQSRSVSL   88 (475)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~n~~~g~~~~~~~l~~~~~s~   88 (475)
                      -++++++++||||.++|+||||+.|...    |+.|+++.+-+.+.       ..++|++||+||||+||+||...+..+
T Consensus       530 v~~t~r~L~RvYP~~~R~dSSNynPq~~----W~~G~QmVAlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~~L~~~~~~F  605 (746)
T KOG0169|consen  530 VRHTQRNLLRVYPKGLRVDSSNYNPQEF----WNHGCQMVALNFQTPGRMLDLNQGMFRANGGCGYVLKPDFLLDSGSTF  605 (746)
T ss_pred             HHHhHhheeeecCCccccCCCCCChHHH----HhcCceEEEEecCCCChhhhhhhhhhccCCCccceECcHHHcCCCCcc
Confidence            5789999999999999999999999766    67777777666554       348899999999999999999833222


Q ss_pred             eeeEeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCC-C---CCCCCcEEEEEEe--CCCCceEEee-eecCC
Q psy15955         89 VDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKD-M---SGTSDPYVKVALL--PDKKHRLETK-IKRRT  161 (475)
Q Consensus        89 ~~~~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~---~~~~dpyv~v~l~--~~~~~~~kT~-v~~~~  161 (475)
                           ++...  ..+          ...+|.|+|+++.+++..- .   ...+||||.|.+.  |.+..+.+|+ |..|+
T Consensus       606 -----~P~~~--~~~----------~~~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~Ng  668 (746)
T KOG0169|consen  606 -----DPKSN--LPP----------VKKTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNG  668 (746)
T ss_pred             -----CCCCC--CCC----------CCceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCC
Confidence                 22111  011          2227999999999776442 2   2467999999984  4455678999 77789


Q ss_pred             CCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC--cccceeeeee
Q psy15955        162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD--KCGELLTSLC  239 (475)
Q Consensus       162 ~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~--~~G~l~l~l~  239 (475)
                      +||.|+|+|.|. +.+.++  +.|+|.|+|+|..++|+|+|+.++|+.+|..|-.   ..+|....|+  ....|.+.+.
T Consensus       669 fnP~W~e~f~F~-l~vPEL--AliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~~~asLfv~i~  742 (746)
T KOG0169|consen  669 FNPIWDEEFEFQ-LSVPEL--ALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEALSSASLFVRIA  742 (746)
T ss_pred             cCcccCCeEEEE-Eeccce--eEEEEEEEecCCCCcccccceeeccHHHhhCcee---eeeecCCCCccccceeEEEEEE
Confidence            999999999999 666554  5999999999999999999999999999976533   4566555443  2344555544


Q ss_pred             e
Q psy15955        240 Y  240 (475)
Q Consensus       240 ~  240 (475)
                      +
T Consensus       743 ~  743 (746)
T KOG0169|consen  743 I  743 (746)
T ss_pred             E
Confidence            4

>KOG1013|consensus

Probab=99.92  E-value=3.9e-26  Score=209.08  Aligned_cols=269  Identities=30%  Similarity=0.460  Sum_probs=229.4

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      -..|.+.+.+.|+.....+..++.+|++|..++..+..|||++..++|.-.  ...+|++..+++||.|+|+-.+..+.-
T Consensus        77 t~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~  156 (362)
T KOG1013|consen   77 TTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD  156 (362)
T ss_pred             hhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence            356999999999999999999999999999999999999999999987533  357899999999999999876664444


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcc--eeeccCCC-C------CCcccceeeeeeecCCceeEE
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT--FWKALKPP-A------KDKCGELLTSLCYHPSNSVLT  248 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~--~~~~L~~~-~------~~~~G~l~l~l~~~~~~~~L~  248 (475)
                      .......+++.|.|.+.+..++++|+..+++..+...+...  .|+.-..+ .      -+..|.|.+++.|.....-+.
T Consensus       157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~  236 (362)
T KOG1013|consen  157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLI  236 (362)
T ss_pred             chhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceE
Confidence            55556789999999999999999999999999887665533  23322211 1      257899999999999999999


Q ss_pred             EEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCC
Q psy15955        249 ITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRN  328 (475)
Q Consensus       249 v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d  328 (475)
                      |++++|..|..+|.++-+||||+.++.++.....+++|.+.+++.+|.|++.|.|.+.+.+|....+.|.|||++..+..
T Consensus       237 vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~  316 (362)
T KOG1013|consen  237 VTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSN  316 (362)
T ss_pred             EEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCc
Confidence            99999999999999999999999999888777788999999999999999999999999999999999999999988788


Q ss_pred             eeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        329 ELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       329 ~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                      +++|-+...+  ...++-+.||.+....+......|+.|...
T Consensus       317 d~~GG~~~g~--~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~  356 (362)
T KOG1013|consen  317 DSIGGSMLGG--YRRGEVHKHWGRCLFDQDANFERSSGLETE  356 (362)
T ss_pred             cCCCcccccc--cccchhhcCccccccccccccccccccccc
Confidence            9999887743  344567789999888888888888888654

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.92  E-value=1.2e-24  Score=182.44  Aligned_cols=122  Identities=39%  Similarity=0.643  Sum_probs=111.3

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeeccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQ  178 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~  178 (475)
                      +|+|++++.|+...+.|.|+|++|++|++.+.. |.+||||+|++.|++  ..++||+++++++||+|||+|.|. ++..
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~   79 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VERE   79 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHH
Confidence            599999999999999999999999999999975 899999999998765  345799999999999999999999 7777


Q ss_pred             ccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955        179 KLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       179 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      ++....|.|+|||+|..+++++||++.++|.++..+.....|++|.
T Consensus        80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            7777899999999999999999999999999998887788999874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>PLN02952 phosphoinositide phospholipase C

Probab=99.92  E-value=9.1e-25  Score=222.35  Aligned_cols=204  Identities=21%  Similarity=0.242  Sum_probs=151.4

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeee
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDM   91 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~   91 (475)
                      .-+++++.+.|+||+|+|+||+|++|...|...+...+.+=++.   +....++|..||+||||+||++|+.....-  -
T Consensus       381 ~v~~n~~~l~RiYP~g~R~dSsNy~P~~~W~~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVlKP~~lr~~~~~~--~  458 (599)
T PLN02952        381 VVRFTQRNILRIYPKGTRITSSNYKPLIGWMHGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYLKKPDFLMKKGFHD--E  458 (599)
T ss_pred             HHHHhhhhceeeCCCCCcCcCCCCCchhHhcCccEEeeecccCCChHHHhhhchhccCCCCCceECCHHHcccCCcc--c
Confidence            34789999999999999999999999888555444444333332   233458899999999999999998643211  0


Q ss_pred             EeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCC------CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCC
Q psy15955         92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAK------DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLN  163 (475)
Q Consensus        92 ~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~n  163 (475)
                      ..++....             .....|.|+|++|.+|+..      +....+||||+|.+.  |.+..+.+|+++.+++|
T Consensus       459 ~fdp~~~~-------------~~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~n  525 (599)
T PLN02952        459 VFDPKKKL-------------PVKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWY  525 (599)
T ss_pred             ccCCCCCC-------------CccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCC
Confidence            11222111             1235699999999998632      223456999999995  34556779999999999


Q ss_pred             ceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeee
Q psy15955        164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLC  239 (475)
Q Consensus       164 P~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~  239 (475)
                      |+|||+|.|. +.+.+  ...|+|+|||+|..+.++|+|++++||..|..|-   .|++|....+...+...+-+.
T Consensus       526 PvWnE~F~F~-i~~PE--LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~  595 (599)
T PLN02952        526 PAWNEEFSFP-LTVPE--LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMR  595 (599)
T ss_pred             cccCCeeEEE-EEcCC--ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEE
Confidence            9999999998 44444  4689999999998888999999999999998765   488998777766665544443

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.92  E-value=1.3e-24  Score=184.88  Aligned_cols=135  Identities=41%  Similarity=0.720  Sum_probs=121.3

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      |+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++.+...+++|++++++.||.|||+|.|.++.++++
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~   80 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE   80 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence            89999999999999999999999999999999999999999987665555678999999999999999999999888887


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL  367 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L  367 (475)
                      +..|.|+|||++..+++++||++.|+. ...+..+..+|.+|+..+++.+..||.|
T Consensus        81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~-~~~~~~~~~~W~~l~~~~~~~~~~wh~l  135 (135)
T cd08410          81 NVSLVFTVYGHNVKSSNDFIGRIVIGQ-YSSGPSETNHWRRMLNSQRTAVEQWHSL  135 (135)
T ss_pred             CCEEEEEEEeCCCCCCCcEEEEEEEcC-ccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence            778999999999999999999999865 2333456799999999999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.92  E-value=2.5e-24  Score=179.62  Aligned_cols=118  Identities=42%  Similarity=0.760  Sum_probs=107.9

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |+|++++.|.  .+.|.|.|++|++|+..+ .+.+||||+|++.++.  ..++||++++++.||+|||+|.|..++..++
T Consensus         2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l   78 (122)
T cd08381           2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL   78 (122)
T ss_pred             CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence            8999999998  899999999999999999 8999999999998754  3467999999999999999999984477777


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL  223 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L  223 (475)
                      ....|+|+|||+|..+++++||++.++|+++..++....||+|
T Consensus        79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            7889999999999999999999999999999988778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.91  E-value=2.4e-24  Score=183.91  Aligned_cols=136  Identities=47%  Similarity=0.848  Sum_probs=123.9

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      .|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||+|++.++++...+++|++++++.||.|||+|.|.++.+++
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l   80 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI   80 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence            48999999999999999999999999999999999999999998766655567899999999999999999999987777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      ....|.|+|||++.++++++||++.|++..  .+.+..+|.+++..|++.+..||.|.
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~~~wh~~~  136 (136)
T cd08402          81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPIAQWHTLQ  136 (136)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCeeeEEEEcC
Confidence            777899999999999999999999999854  46788999999999999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.91  E-value=2.9e-24  Score=183.39  Aligned_cols=136  Identities=49%  Similarity=0.902  Sum_probs=124.5

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      +|+|.++++|.+..+.|.|.|++|++|+..+..|.+||||++++.+++....+++|++++++.||.|+|+|.|.++..++
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~   80 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL   80 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence            59999999999999999999999999999999999999999999776666667899999999999999999999987777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      ....|.|+|||++.++++++||++.+++..  .+.+..+|.++...|++.+..||.|.
T Consensus        81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i~~Wh~l~  136 (136)
T cd08404          81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQIAEWHMLC  136 (136)
T ss_pred             CCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCeeeEEEecC
Confidence            677899999999999999999999999876  46788999999999999999999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.91  E-value=2e-24  Score=184.35  Aligned_cols=136  Identities=61%  Similarity=1.048  Sum_probs=123.8

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      +|+|.++++|.+..+.|.|+|++|+||+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++.+++
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~   80 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL   80 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence            49999999999999999999999999999998999999999998765555557899999999999999999999987777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      ++..|.|+|||++.++++++||++.+++...  +.+.++|.+|+..|++.+..||.|.
T Consensus        81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~~wh~l~  136 (136)
T cd08405          81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVAQWHRLK  136 (136)
T ss_pred             CCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchhEEEecC
Confidence            7778999999999999999999999998765  5678999999999999999999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.91  E-value=5.8e-24  Score=178.17  Aligned_cols=121  Identities=40%  Similarity=0.645  Sum_probs=110.5

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDM-SGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      |+|++++.|+...+.|.|+|++|++|+..+. .+.+||||+|++.|++.  .++||+++++++||+|||+|.|. ++...
T Consensus         2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~~   80 (125)
T cd04029           2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHSQ   80 (125)
T ss_pred             cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHHH
Confidence            8999999999999999999999999998875 47899999999987653  46799999999999999999999 77777


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      +....|.|+|||+|..+++++||++.++|.++........|++|.
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            777789999999999999999999999999999988889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.91  E-value=4.8e-24  Score=181.60  Aligned_cols=134  Identities=48%  Similarity=0.846  Sum_probs=121.9

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      |+|.+++.|.+..+.|.|+|++|++|+..+..|.+||||++++.+.+....+++|++++++.||.|||+|.|.++.+.+.
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~   80 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD   80 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence            89999999999999999999999999999999999999999997666556678999999999999999999999877776


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL  367 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L  367 (475)
                      ...|.|+|||++..+++++||++.+++.  ..+.+.++|.+++..|++.+..||.|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~~~wh~~  134 (134)
T cd08403          81 NVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPIAQWHQL  134 (134)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCeeeEeecC
Confidence            6789999999999999999999999875  34567789999999999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.91  E-value=7.5e-24  Score=177.33  Aligned_cols=123  Identities=35%  Similarity=0.639  Sum_probs=114.6

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ  181 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~  181 (475)
                      .|+|++++.|+...++|.|+|++|++|+..+..+.+||||++.+.+.+.+++||+++++ .||+|||+|.|..++..++.
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~   80 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELN   80 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhc
Confidence            69999999999999999999999999999998889999999999888778889999888 99999999999867777788


Q ss_pred             cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      ...|.|+|||++.++++++||++.++|+++..+.....|++|.|
T Consensus        81 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          81 NMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             cCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            88999999999999999999999999999988888899999975

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.91  E-value=4.8e-24  Score=216.41  Aligned_cols=193  Identities=20%  Similarity=0.219  Sum_probs=143.7

Q ss_pred             HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeeeE
Q psy15955         16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMY   92 (475)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~   92 (475)
                      =+++++++.|+||+|+|+||||++|...|...+...+.+=++.   +....++|..||+||||+||++|+.....-..  
T Consensus       364 v~~n~~~L~RiYP~G~RvdSSNynP~~~W~~G~QmVALN~QT~d~~M~LN~G~F~~NG~cGYVLKP~~lr~~~~~~~~--  441 (581)
T PLN02222        364 VRFTQHNLLRIYPKGTRVTSSNYNPLVGWSHGAQMVAFNMQGYGRSLWLMQGMFRANGGCGYIKKPDLLLKSGSDSDI--  441 (581)
T ss_pred             HHHhhhhceeeCCCCCcCcCCCCCchhHhcCCcEEeeccccCCChhhhhhcchhccCCCCceEECCHHhccCCccccc--
Confidence            3689999999999999999999999888655555544443332   33455889999999999999999876432111  


Q ss_pred             eCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCC----C--CCCCCCCCcEEEEEEe--CCCCceEEeeeecCCCCc
Q psy15955         93 IDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELP----A--KDMSGTSDPYVKVALL--PDKKHRLETKIKRRTLNP  164 (475)
Q Consensus        93 ~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~----~--~~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~nP  164 (475)
                      .++.....             ....|.|+|+++.+++    .  .+....+||||+|.+.  |.+..+.+|+++.++.||
T Consensus       442 fdp~~~~~-------------~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP  508 (581)
T PLN02222        442 FDPKATLP-------------VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIP  508 (581)
T ss_pred             cCCCCCCC-------------ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCc
Confidence            12221111             2346999999999854    1  1233568999999995  445667899999999999


Q ss_pred             eeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC
Q psy15955        165 RWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD  229 (475)
Q Consensus       165 ~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~  229 (475)
                      +|||+|.|. +.+.+  ...|+|.|||+|..+.++|+|++++|+..|..|-.   ..+|....+.
T Consensus       509 ~W~e~f~F~-i~~Pe--LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~  567 (581)
T PLN02222        509 AWDEVFEFP-LTVPE--LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGE  567 (581)
T ss_pred             ccCCeeEEE-EEcCc--eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccCCCcC
Confidence            999999998 44444  56999999999988889999999999999976533   5577665543

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.91  E-value=1.4e-23  Score=176.59  Aligned_cols=125  Identities=43%  Similarity=0.809  Sum_probs=111.1

Q ss_pred             cccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       101 ~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      .+|+|++++.|+...+.|.|+|++|++|+..+.. +.+||||+|++.+.+.++.||+++++++||+|||+|.|..++..+
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~   80 (128)
T cd08388           1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ   80 (128)
T ss_pred             CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence            3699999999999999999999999999998876 899999999998777777899999999999999999995466666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCC--CCcceeeccCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS--EKPTFWKALKP  225 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~--~~~~~~~~L~~  225 (475)
                      +....|+|+|||+|.++++++||++.++|+++...  +....|.+|++
T Consensus        81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            66678999999999999999999999999999776  44568998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.91  E-value=1.1e-23  Score=176.71  Aligned_cols=122  Identities=35%  Similarity=0.627  Sum_probs=109.7

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQ  178 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~  178 (475)
                      .|+|++++.|+...+.|.|+|++|++|+..+.. |.+||||++++.|+..  .++||++++++.||+|||+|.|. ++..
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~   79 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEAD   79 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHH
Confidence            499999999999999999999999999999875 8999999999988753  46799999999999999999999 7777


Q ss_pred             ccccceEEEEEEeeCCCCCCccccceeeccccccCCC---CcceeeccC
Q psy15955        179 KLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE---KPTFWKALK  224 (475)
Q Consensus       179 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~~~~L~  224 (475)
                      ++....|+|.|||.+.++++++||++.|+|+++....   ....||+|.
T Consensus        80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            7777899999999999999999999999999997654   456899873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.91  E-value=7.7e-24  Score=176.05  Aligned_cols=119  Identities=28%  Similarity=0.427  Sum_probs=109.7

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC---ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       104 ~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      +|++++.|+...+.|.|.|++|+||+..+..+.+||||++++.|+++   .++||+++++++||+|||+|.|. ++.+++
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L   80 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKL   80 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHh
Confidence            68999999999999999999999999998888999999999998873   57899999999999999999999 888899


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCC-Ccceeecc
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE-KPTFWKAL  223 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~~~~~L  223 (475)
                      ....|+|+|||++..+++++||++.++|+++.... ....||.|
T Consensus        81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999999999999999999999999996664 46789876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.91  E-value=1.6e-23  Score=175.92  Aligned_cols=122  Identities=52%  Similarity=0.918  Sum_probs=112.4

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ  181 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~  181 (475)
                      +|+|+++++|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+...++|++++++.||+|||+|.|. ++..++.
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~   80 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-VPYSELG   80 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe-CCHHHhC
Confidence            699999999999999999999999999999988999999999998776677899999999999999999999 6665666


Q ss_pred             cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955        182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      ...|.|+|||+|.++++++||++.++|+++..+.....|++|.
T Consensus        81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            6789999999999999999999999999998888889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.91  E-value=2.8e-23  Score=176.70  Aligned_cols=124  Identities=33%  Similarity=0.494  Sum_probs=108.9

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeec
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEG  174 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~  174 (475)
                      .....|+|++++.|  ..+.|.|.|++|++|+..+ ..+.+||||++++.+++.  .+.||+++++++||+|||+|.|. 
T Consensus        13 ~~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-   89 (146)
T cd04028          13 ASPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-   89 (146)
T ss_pred             cCCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-
Confidence            34558999999999  5789999999999999864 568899999999987654  36799999999999999999999 


Q ss_pred             ccccccccceEEEEEE-eeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        175 FPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       175 ~~~~~~~~~~L~~~V~-d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      ++   +....|.|+|| |++.++++++||++.|+|+++..+.....||+|.+..
T Consensus        90 v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028          90 VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            44   56789999999 6888888999999999999998888888999998754

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.90  E-value=2.4e-23  Score=174.91  Aligned_cols=122  Identities=48%  Similarity=0.889  Sum_probs=113.1

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ  181 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~  181 (475)
                      +|+|++++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+...++|++++++.||+|||+|.|. ++...+.
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~   80 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-VPPQELP   80 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe-CCHHHhC
Confidence            699999999999999999999999999999999999999999998766677899999999999999999998 7766666


Q ss_pred             cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955        182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      ...|.|+|||++.++++++||++.++|+++..++....|++|+
T Consensus        81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            7789999999999999999999999999999888889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.90  E-value=1.2e-23  Score=178.98  Aligned_cols=133  Identities=34%  Similarity=0.578  Sum_probs=120.9

Q ss_pred             ceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccccc
Q psy15955        233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRE  312 (475)
Q Consensus       233 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~  312 (475)
                      .|++++.|.+..+.|.|+|++|++|+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..++..
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~   80 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK   80 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence            47899999999999999999999999999889999999999987655556789999999999999999999998777777


Q ss_pred             ceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955        313 CSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL  367 (475)
Q Consensus       313 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L  367 (475)
                      ..|.|+|||++..+++++||++.+++..  .++...+|.+++..|++.+..||.|
T Consensus        81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~~wh~l  133 (133)
T cd08384          81 KTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIEAWHTL  133 (133)
T ss_pred             CEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChheeecC
Confidence            7899999999998899999999999864  4567789999999999999999976

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.90  E-value=3.6e-23  Score=174.18  Aligned_cols=124  Identities=69%  Similarity=1.170  Sum_probs=113.4

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ  181 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~  181 (475)
                      +|+|++++.|......|.|+|++|++|+..+..+.+||||+|++.+.+.+..+|++++++.||+|||+|.|..++.+.+.
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~   81 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQ   81 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhC
Confidence            69999999999999999999999999999998899999999999776667789999999999999999999755555666


Q ss_pred             cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      ...|.|+|||+|..+++++||++.++++++..+.....|+.|.+
T Consensus        82 ~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          82 QRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            67899999999999899999999999999998888899999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>KOG2059|consensus

Probab=99.90  E-value=1.9e-23  Score=207.95  Aligned_cols=217  Identities=28%  Similarity=0.425  Sum_probs=178.6

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      ...|.|+|.+|+||+..+..|.+||||.|.+  +.....||.++.+++.|.|.|+|.|. +|..   ...|.|.|||.| 
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~---F~~l~fYv~D~d-   76 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFE-IPRT---FRYLSFYVWDRD-   76 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEee--cchhhhhhhhhhhhcCCccccceEEe-cCcc---eeeEEEEEeccc-
Confidence            4569999999999999999999999999999  45557899999999999999999998 6643   468999999999 


Q ss_pred             CCCCccccceeeccccccCCCCcceeeccCCC--CCCcccceeeeeeecCC--ceeEEEEEEeeccCcccccCCCccceE
Q psy15955        195 FSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP--AKDKCGELLTSLCYHPS--NSVLTITLLKARNLKAKDINGKSDPYV  270 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~--~~~~~G~l~l~l~~~~~--~~~L~v~v~~a~~L~~~~~~~~~dpyv  270 (475)
                      +++|+.||.+.|.=++|....+.+.|+.|.+-  +.+..|+|++.+.+.+.  ...+...++.++++.+.. ++.+|||+
T Consensus        77 ~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~  155 (800)
T KOG2059|consen   77 LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFA  155 (800)
T ss_pred             cccccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcce
Confidence            89999999999999999887788999999864  45688999999998763  445667778888877765 44599999


Q ss_pred             EEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc-------------ccceEEEEEEe-ccCCCCCeeeEEEEE
Q psy15955        271 KVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI-------------RECSLNVMVMD-FDNIGRNELIGRILL  336 (475)
Q Consensus       271 ~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l-------------~~~~l~i~V~d-~~~~~~d~~lG~~~i  336 (475)
                      ++.+.. +......+|++++++.+|.|+|.|.|.+..+.-             ....|.+++|+ ++....++|+|++.+
T Consensus       156 ~v~~~g-~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv  234 (800)
T KOG2059|consen  156 RVTLCG-PSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRV  234 (800)
T ss_pred             EEeecc-cchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEe
Confidence            998643 333344789999999999999999999865410             12468899999 555666999999999


Q ss_pred             cCcC
Q psy15955        337 AGKN  340 (475)
Q Consensus       337 ~l~~  340 (475)
                      ++..
T Consensus       235 ~v~~  238 (800)
T KOG2059|consen  235 PVDV  238 (800)
T ss_pred             ehhh
Confidence            8743

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.90  E-value=3.6e-23  Score=173.55  Aligned_cols=122  Identities=31%  Similarity=0.492  Sum_probs=106.8

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~  309 (475)
                      +|+|++++.|.+..+.|.|.|++|+||++.+.. |.+||||++++.++.....+++|++++++.||+|||+|.|.++.++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~   80 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE   80 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence            599999999999999999999999999999875 8899999999987765556789999999999999999999998888


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      +.+..|.|+|||++.++++++||++.|++.+.........|+.
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~  123 (125)
T cd08393          81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYP  123 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEE
Confidence            8888999999999999999999999999876544333344443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.89  E-value=9.4e-23  Score=169.55  Aligned_cols=120  Identities=24%  Similarity=0.302  Sum_probs=106.0

Q ss_pred             ceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceee-eeeecccccCCCCCeecceEEEeecccccc
Q psy15955        233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI-EKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       233 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      +|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.++.... .+++|++++++.||+|||+|.|+++.+++.
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~   81 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY   81 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence            6899999999999999999999999999888899999999999887543 578999999999999999999999999999


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCC-cccccccc
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGA-SETKHWQD  352 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~-~~~~~w~~  352 (475)
                      +..|.|+|||++..+++++||++.|++.+.... +...+|++
T Consensus        82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~  123 (124)
T cd08680          82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN  123 (124)
T ss_pred             cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence            999999999999999999999999998765332 23444543

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>PLN02228 Phosphoinositide phospholipase C

Probab=99.89  E-value=9.2e-23  Score=206.53  Aligned_cols=204  Identities=22%  Similarity=0.273  Sum_probs=150.4

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeee
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDM   91 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~   91 (475)
                      .=.++++++.|+||+|+|+||+|++|...|...+...+.+=++.   +....++|..||+||||+||++|+.....+   
T Consensus       345 ~v~hNkr~l~RvYP~g~RvdSSNy~P~~~W~~G~QmVALN~QT~d~~M~lN~g~F~~NG~cGYVLKP~~Lr~~~~~f---  421 (567)
T PLN02228        345 LVRFTQRNLVRIYPKGTRVDSSNYDPHVGWTHGAQMVAFNMQGHGKQLWIMQGMFRANGGCGYVKKPRILLDEHTLF---  421 (567)
T ss_pred             HHHHhhhhceeeCCCCCcCCCCCCCchhHhcCccEEeeecccCCChHHHhhcCchhhCCCCCceeCchhhccccccc---
Confidence            34578999999999999999999999887655555444443332   223558899999999999999999753221   


Q ss_pred             EeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCC---C---CCCCCCCcEEEEEEe--CCCCceEEeeeecCCCC
Q psy15955         92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPA---K---DMSGTSDPYVKVALL--PDKKHRLETKIKRRTLN  163 (475)
Q Consensus        92 ~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~---~---~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~n  163 (475)
                        ++.....             ....|.|+|++|++|+.   .   +....+||||+|.+.  |.+..+++|+++.++.|
T Consensus       422 --~p~~~~p-------------~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~n  486 (567)
T PLN02228        422 --DPCKRLP-------------IKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWF  486 (567)
T ss_pred             --CCccCCC-------------cCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCC
Confidence              2211110             13469999999999842   1   223458999999985  34556789999999999


Q ss_pred             cee-eeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeeee
Q psy15955        164 PRW-NETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLCY  240 (475)
Q Consensus       164 P~w-~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~~  240 (475)
                      |+| +|+|.|. +.+.+  -..|+|.|+|+|..+.++|+|++++||..|..|-   ...+|....+..  .+.|.+.+.+
T Consensus       487 P~W~~e~f~F~-~~~pE--LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~  560 (567)
T PLN02228        487 PIWGNDEFLFQ-LRVPE--LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFAL  560 (567)
T ss_pred             ceECCCeEEEE-EEcCc--eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEE
Confidence            999 9999998 44444  4699999999998888999999999999996543   356776665543  3567776666


Q ss_pred             cC
Q psy15955        241 HP  242 (475)
Q Consensus       241 ~~  242 (475)
                      .+
T Consensus       561 ~~  562 (567)
T PLN02228        561 DP  562 (567)
T ss_pred             cC
Confidence            54

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.89  E-value=2.2e-22  Score=169.93  Aligned_cols=122  Identities=34%  Similarity=0.631  Sum_probs=110.7

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      .|+|++++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+++  ..++||++++++.||+|||+|.|. ++...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~   80 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEE   80 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHH
Confidence            699999999999999999999999999999988999999999997654  457899999999999999999999 76666


Q ss_pred             cccceEEEEEEeeCCC--CCCccccceeeccccccCCCCcceeeccC
Q psy15955        180 LQSRVLHLHVFDYDRF--SRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~--~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      +....|.|.|||.+..  +++++||++.++|.++..+.....|++|.
T Consensus        81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            7778999999999875  68999999999999998888888999884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.89  E-value=2e-22  Score=169.08  Aligned_cols=122  Identities=42%  Similarity=0.819  Sum_probs=111.9

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ  181 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~  181 (475)
                      |+|+++++|+...+.|.|+|++|++|+..+ ..+.+||||+|++.+.+....+|+++++++||+|||+|.|. ++...+.
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-i~~~~l~   79 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-VSFKELQ   79 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE-cCHHHhc
Confidence            899999999999999999999999999998 68899999999998766667899999999999999999999 7766666


Q ss_pred             cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      ...|.|+|||.+..+++++||++.++|+++........|++|.+
T Consensus        80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            67899999999998889999999999999999888899999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.89  E-value=1.3e-22  Score=169.20  Aligned_cols=118  Identities=31%  Similarity=0.532  Sum_probs=103.3

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEee-cccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV-PWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v-~~~~  309 (475)
                      .|+|.+++.|.  .+.|.|.|++|+||+..+ .+.+||||++++.++.....+++|++++++.||.|||+|.|.+ +..+
T Consensus         1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~   77 (122)
T cd08381           1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED   77 (122)
T ss_pred             CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence            38999999999  789999999999999999 8999999999998776656678999999999999999999997 7677


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccc
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ  351 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~  351 (475)
                      +.+..|.|+|||++.++++++||++.+++.+.........|.
T Consensus        78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~  119 (122)
T cd08381          78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWY  119 (122)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceE
Confidence            777899999999999999999999999987665443344444

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.89  E-value=1.3e-22  Score=169.93  Aligned_cols=120  Identities=30%  Similarity=0.505  Sum_probs=104.7

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCccccc-CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~  309 (475)
                      +|+|++++.|.+..+.|.|.|++|+||+..+. .+.+||||++++.+++....++||++++++.||+|||+|.|.++.++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~   80 (125)
T cd04029           1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ   80 (125)
T ss_pred             CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence            49999999999999999999999999998865 57899999999988776566789999999999999999999998888


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccc
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW  350 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w  350 (475)
                      +.+..|.|+|||++..+++++||++.+++.+..-......|
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w  121 (125)
T cd04029          81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEEC  121 (125)
T ss_pred             hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccE
Confidence            87788999999999999999999999988665443333333

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.89  E-value=1.6e-22  Score=172.41  Aligned_cols=134  Identities=51%  Similarity=0.887  Sum_probs=123.2

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      |+|.++++|.+..+.|.|.|++|++|+..+..+.+||||++++.+.+....+++|++++++.||.|||+|.|.++...+.
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~   80 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE   80 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence            89999999999999999999999999999888899999999998776666678999999999999999999999877766


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeecc
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRL  367 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L  367 (475)
                      ...|.|+|||.+..+++++||.+.+++.+  .+.+..+|.+++..|++.++.||.|
T Consensus        81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~~wh~~  134 (134)
T cd00276          81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIARWHKL  134 (134)
T ss_pred             CcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceEEeeeC
Confidence            67899999999998889999999999988  5678899999999999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.89  E-value=8.5e-23  Score=172.84  Aligned_cols=123  Identities=28%  Similarity=0.432  Sum_probs=109.3

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      .|+|.+++.|.+..++|.|+|++|++|+..+..+.+||||+|++.+++..  +.||+++++++||+|||+|.|. ++..+
T Consensus         1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~   79 (136)
T cd08406           1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIV   79 (136)
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHH
Confidence            38999999999999999999999999999998899999999999876543  5689999999999999999999 88788


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      +....|+|+|||+|..+++++||++.+....  .+....+|..+....
T Consensus        80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~  125 (136)
T cd08406          80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASL  125 (136)
T ss_pred             hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCC
Confidence            8889999999999999999999999997764  455667898886543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.89  E-value=2.2e-22  Score=168.86  Aligned_cols=120  Identities=39%  Similarity=0.686  Sum_probs=108.9

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      |+|++++.|+...+.|.|+|++|++|+..+ ..+.+||||+|++.+.+.  .+.+|++++++.||+|||+|.|. ++..+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~   79 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ   79 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence            899999999999999999999999999988 778999999999976543  46799999999999999999998 66666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL  223 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L  223 (475)
                      +....|.|+|||++..+++++||++.++|+++..+.....||+|
T Consensus        80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            66778999999999999999999999999999888888899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.89  E-value=1.4e-22  Score=177.13  Aligned_cols=137  Identities=31%  Similarity=0.493  Sum_probs=118.5

Q ss_pred             ccceeeeeeecC------------CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeec
Q psy15955        231 CGELLTSLCYHP------------SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFN  298 (475)
Q Consensus       231 ~G~l~l~l~~~~------------~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~  298 (475)
                      +|+|.+++.|.|            ..+.|.|+|++|+||+..+..+.+||||++++.+++....+++|++++++.||.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            499999999999            45899999999999999998899999999999776655667899999999999999


Q ss_pred             ceEEEee-cccccccceEEEEEEeccCCCCCeeeEEEEEcCcCC-----------CCCcccccccccccCCCcceeeeec
Q psy15955        299 ESFSFNV-PWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG-----------SGASETKHWQDMITKPRQTIVQWHR  366 (475)
Q Consensus       299 e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-----------~~~~~~~~w~~~~~~p~~~~s~w~~  366 (475)
                      |+|.|.+ +.+++.+..|.|+|||++.++++++||++.+++.+.           ..+.+..||.+|+.+|...+....+
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~  160 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP  160 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence            9999984 556666778999999999999999999999999875           3466778888888888887776655


Q ss_pred             c
Q psy15955        367 L  367 (475)
Q Consensus       367 L  367 (475)
                      |
T Consensus       161 ~  161 (162)
T cd04020         161 L  161 (162)
T ss_pred             c
Confidence            4

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.88  E-value=2e-22  Score=169.17  Aligned_cols=111  Identities=33%  Similarity=0.442  Sum_probs=102.3

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~  309 (475)
                      .|+|++++.|.+..+.|.|.|++|+||++.+.. |.+||||++++.++.....++||++++++.||+|||+|.|.++..+
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~   80 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL   80 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence            389999999999999999999999999999875 8999999999988776666789999999999999999999999888


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  341 (475)
                      +.+..|.|+|||++.++++++||++.|++.+.
T Consensus        81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~  112 (128)
T cd08392          81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADW  112 (128)
T ss_pred             hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCc
Confidence            88889999999999999999999999988654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.88  E-value=1.7e-22  Score=170.73  Aligned_cols=122  Identities=26%  Similarity=0.421  Sum_probs=107.5

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDM--SGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      .|+|.+++.|.+..++|.|.|++|+||+..+.  .+.+||||+|++.+++.  .+.||+++++++||+|||.|.|. ++.
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~-v~~   79 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE-LPS   79 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE-CCH
Confidence            38999999999999999999999999999983  34589999999987643  35699999999999999999999 888


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      .++....|.|+|||+|..+++++||++.+++..  .+....+|..+...
T Consensus        80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~  126 (138)
T cd08407          80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDN  126 (138)
T ss_pred             HHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence            888888999999999999999999999999975  45566788887554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=9.9e-22  Score=167.26  Aligned_cols=125  Identities=26%  Similarity=0.454  Sum_probs=104.7

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP  306 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~  306 (475)
                      ....|+|.+++.|  ..+.|.|.|++|+||+..+ ..|.+||||++++.++++...++||+++++++||+|||+|.|.+.
T Consensus        14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~   91 (146)
T cd04028          14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS   91 (146)
T ss_pred             CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence            4567999999999  4689999999999998874 578899999999998877667889999999999999999999997


Q ss_pred             ccccccceEEEEEE-eccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955        307 WEKIRECSLNVMVM-DFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH  371 (475)
Q Consensus       307 ~~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~  371 (475)
                         +.+..|.|+|| |++.++++++||++.|+|.+..-              +.....|+.|.++.
T Consensus        92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~--------------~~~~~~Wy~L~~~~  140 (146)
T cd04028          92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDL--------------SNLVIGWYKLFPTS  140 (146)
T ss_pred             ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccC--------------CCCceeEEecCCcc
Confidence               45678999999 68888899999999998865432              22345677776543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.87  E-value=7.8e-22  Score=163.54  Aligned_cols=116  Identities=30%  Similarity=0.438  Sum_probs=101.0

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |+|++++.|  ..+.|.|+|++|++|++.+ .+.+||||+|++.|+..  .+.||++++++.||+|||+|.|. ++..++
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~   76 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDY   76 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHh
Confidence            789999998  7899999999999999998 88999999999987653  35689999999999999999998 665554


Q ss_pred             ccceEEEEEEeeCCCC-CCccccceeeccccccCCCCcceeecc
Q psy15955        181 QSRVLHLHVFDYDRFS-RDDSIGEVFLPLCQVDLSEKPTFWKAL  223 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~L  223 (475)
                      . ..|.|+|||.+... ++++||++.|+|.++..+.....||.|
T Consensus        77 ~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          77 Q-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             C-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            3 46889999999875 478999999999999877777899976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.87  E-value=1e-21  Score=165.29  Aligned_cols=122  Identities=39%  Similarity=0.689  Sum_probs=106.0

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      .|+|.+++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+  ..+++|++++++.||+|||+|.|..++..+
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   81 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET   81 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence            599999999999999999999999999999988999999999997643  346789999999999999999998444455


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      +....|.|+|||++..+++++||++.++|++.. ......||+|+
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            556789999999999889999999999999943 33457899984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.87  E-value=1.4e-21  Score=161.38  Aligned_cols=117  Identities=25%  Similarity=0.386  Sum_probs=100.2

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecC-CCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR-TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      |.|.|+|++|++|+..+ .|++||||+|.+   +.++++|+++.+ +.||+|||+|.|. ++  . ....|.|+|||+|.
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l---g~~~~kT~v~~~~~~nP~WNe~F~f~-v~--~-~~~~l~~~V~d~d~   73 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV---GHAVYETPTAYNGAKNPRWNKTIQCT-LP--E-GVDSIYIEIFDERA   73 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEE---CCEEEEeEEccCCCCCCccCeEEEEE-ec--C-CCcEEEEEEEeCCC
Confidence            67999999999998877 789999999999   556779999876 7999999999998 33  2 23579999999999


Q ss_pred             CCCCccccceeeccc-cccCCCCcceeeccCCCCC-Ccccceeeeeee
Q psy15955        195 FSRDDSIGEVFLPLC-QVDLSEKPTFWKALKPPAK-DKCGELLTSLCY  240 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~-~l~~~~~~~~~~~L~~~~~-~~~G~l~l~l~~  240 (475)
                      +++|++||.+.++|. .+..+.....|++|.+..+ ...|+|+++++|
T Consensus        74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          74 FTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             CcCCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999999999996 5777777899999987543 467999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.87  E-value=2e-21  Score=163.24  Aligned_cols=121  Identities=37%  Similarity=0.633  Sum_probs=108.5

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      .|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.++.+  .+++|++++++.||.|||+|.|.++..++
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~l   79 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSEL   79 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHHh
Confidence            6999999999999999999999999999999889999999999876543  36799999999999999999999987777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      .+..|.|+|||++.++++++||++.+++.+...+...++|.+|
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08385          80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL  122 (124)
T ss_pred             CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence            7778999999999999999999999999887666677777765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.86  E-value=1.3e-21  Score=167.04  Aligned_cols=125  Identities=34%  Similarity=0.581  Sum_probs=109.2

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      +|+|.++++|....+.|.|+|++|++|+..+..|.+||||+|++.+.+.  .+.||+++++++||+|+|+|.|. ++...
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~   79 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEE   79 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHH
Confidence            5999999999999999999999999999999999999999999976543  25689999999999999999999 67666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD  229 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~  229 (475)
                      +....|.|+|||+|..+++++||++.+++..  .+.....|++|....+.
T Consensus        80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~  127 (136)
T cd08404          80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRR  127 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCC
Confidence            6667899999999999999999999999988  35566889998655443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.86  E-value=3.3e-21  Score=161.89  Aligned_cols=121  Identities=36%  Similarity=0.612  Sum_probs=106.0

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      +|+|++++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+++.  .+++|++++++.||.|||+|.|.++..++
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l   79 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQEL   79 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence            6999999999999999999999999999999999999999999865543  35799999999999999999999988777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      .+..|.|+|||++.++++++||++.+++.+.........|..+
T Consensus        80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            7778999999999999999999999999776654455555443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.86  E-value=2e-21  Score=160.13  Aligned_cols=108  Identities=29%  Similarity=0.450  Sum_probs=93.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeC----CCCceEEeeeecCCCCceeeeeEEeeccccc-ccccceEEEEEEe
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLP----DKKHRLETKIKRRTLNPRWNETLYFEGFPIQ-KLQSRVLHLHVFD  191 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~----~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~-~~~~~~L~~~V~d  191 (475)
                      +|.|+|++|++|+..+ .|.+||||+|++.+    ...++++|+++.+++||+|||+|.|. ++.+ .+....|+|.|||
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEE
Confidence            4899999999999988 49999999999852    33456799999999999999999999 4432 4566789999999


Q ss_pred             eCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        192 YDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       192 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      +|..+++++||++.+|+.++..++....|++|.+.
T Consensus        79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            99888899999999999999988888899999754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.86  E-value=4e-21  Score=167.99  Aligned_cols=124  Identities=34%  Similarity=0.541  Sum_probs=108.5

Q ss_pred             ccEEEEEEEEeC------------CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceee
Q psy15955        102 VGQIHFSLEYDF------------DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWN  167 (475)
Q Consensus       102 ~G~i~~~~~~~~------------~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~  167 (475)
                      +|+|.+++.|.+            ..+.|.|+|++|++|+..+..+.+||||+|++.+++  ..++||++++++.||+||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn   80 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN   80 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence            599999999998            458999999999999999988999999999997643  356899999999999999


Q ss_pred             eeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       168 e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      |+|.|..++..++....|.|+|||+|.++++++||++.+++.++...+....|+.+..
T Consensus        81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            9999985555566667899999999999899999999999999987777778887753

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.86  E-value=2.9e-21  Score=162.61  Aligned_cols=117  Identities=30%  Similarity=0.499  Sum_probs=99.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccc---cccccceEEEEEEeeCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI---QKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~---~~~~~~~L~~~V~d~d~  194 (475)
                      +.|+|++|++|+..+..|.+||||+|.+   +..+++|+++++++||+|||+|.|. ++.   .++....|.|+|||++.
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l---~~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~   76 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNL   76 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEE---CCeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccc
Confidence            4799999999999998999999999999   3457899999999999999999998 443   12456789999999999


Q ss_pred             CCCCccccceeecccccc--CCCCcceeeccCCCCC---Ccccceeeee
Q psy15955        195 FSRDDSIGEVFLPLCQVD--LSEKPTFWKALKPPAK---DKCGELLTSL  238 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~--~~~~~~~~~~L~~~~~---~~~G~l~l~l  238 (475)
                      ++++++||++.++|+++.  .+.....|++|.+..+   +..|+|++++
T Consensus        77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~  125 (126)
T cd08682          77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI  125 (126)
T ss_pred             cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence            989999999999999987  4555679999986433   4679998876

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.86  E-value=6.1e-21  Score=159.46  Aligned_cols=120  Identities=31%  Similarity=0.526  Sum_probs=106.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS  196 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~  196 (475)
                      +|.|+|++|++|+..+..+.+||||++.+.  +...++|+++.++.||+|||+|.|.   +..+ ...|.|+|||++..+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~---v~~~-~~~l~~~v~D~d~~~   74 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLP---IEDV-TQPLYIKVFDYDRGL   74 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEE---ecCC-CCeEEEEEEeCCCCC
Confidence            489999999999999999999999999983  3457899999999999999999998   3333 468999999999998


Q ss_pred             CCccccceeeccccccCCCCcceeeccCCCCC-CcccceeeeeeecC
Q psy15955        197 RDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK-DKCGELLTSLCYHP  242 (475)
Q Consensus       197 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~-~~~G~l~l~l~~~~  242 (475)
                      ++++||++.+++.++..+.....|++|.+..+ +..|+|.+.+.+.|
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             CCcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            99999999999999998888899999987664 67899999999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.85  E-value=6.6e-21  Score=160.82  Aligned_cols=123  Identities=30%  Similarity=0.522  Sum_probs=107.0

Q ss_pred             cccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955        230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK  309 (475)
Q Consensus       230 ~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~  309 (475)
                      +.|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..+
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~   80 (127)
T cd04030           1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE   80 (127)
T ss_pred             CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence            36999999999999999999999999999999889999999999977665556789999999999999999999998877


Q ss_pred             cccceEEEEEEeccCC--CCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955        310 IRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~--~~d~~lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      ++...|.|+|||++..  +++++||++.+++.+.........|..
T Consensus        81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  125 (127)
T cd04030          81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD  125 (127)
T ss_pred             hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEE
Confidence            7778899999999875  689999999999877654444444443

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.85  E-value=3.7e-21  Score=163.66  Aligned_cols=123  Identities=25%  Similarity=0.438  Sum_probs=107.5

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC---ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      |+|.+++.|+...++|.|+|++|+||+..+..+.+||||++++.|..+   .++||++++++.||+|||+|.|. ++..+
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~   80 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQ   80 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHH
Confidence            789999999999999999999999999999999999999999987543   25699999999999999999999 88888


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      +....|.|+|||++..+++++||++.+++..... ....+|+.+....
T Consensus        81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~  127 (138)
T cd08408          81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESK  127 (138)
T ss_pred             hCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCC
Confidence            8888999999999999999999999998875432 2346898886543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.85  E-value=4.3e-21  Score=163.48  Aligned_cols=123  Identities=24%  Similarity=0.397  Sum_probs=109.0

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      .|+|++++.|++..++|.|.|++|++|+..+ .+.+||||+|++.+.+.  .++||++++++.||+|||+|.|. ++..+
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~-i~~~~   78 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VTSRQ   78 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-CCHHH
Confidence            4899999999999999999999999999998 78899999999987543  35689999999999999999999 77777


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      +....|.|+|||.+..+++++||++.++......+....+|..+...
T Consensus        79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~  125 (137)
T cd08409          79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK  125 (137)
T ss_pred             hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence            87789999999999989999999999997766666667889888654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.85  E-value=1.1e-20  Score=158.61  Aligned_cols=119  Identities=31%  Similarity=0.526  Sum_probs=103.4

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      |+|.+++.|.+..+.|.|+|++|+||+..+ ..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..++
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l   80 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL   80 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence            899999999999999999999999999988 7789999999999766554457899999999999999999999988777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccc
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW  350 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w  350 (475)
                      ....|.|+|||++..+++++||++.+++.+...+.....|
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w  120 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEW  120 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccE
Confidence            7788999999999999999999999988665433333334

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.84  E-value=6.8e-21  Score=162.58  Aligned_cols=123  Identities=37%  Similarity=0.628  Sum_probs=107.4

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      +|+|.+++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+.+  ....+|++++++.||+|||+|.|. ++.+.
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~   79 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLER   79 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHH
Confidence            599999999999999999999999999999989999999999986543  235689999999999999999998 67666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      +....|.|+|||++..+++++||++.+++.+.  +.....|+++....
T Consensus        80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~  125 (136)
T cd08405          80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKP  125 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCC
Confidence            66678999999999999999999999999886  44557888876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.84  E-value=8.4e-21  Score=161.44  Aligned_cols=122  Identities=32%  Similarity=0.536  Sum_probs=106.0

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccccc
Q psy15955        104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ  181 (475)
Q Consensus       104 ~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~  181 (475)
                      +|++++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+++  ....+|+++++++||+|||+|.|. ++..++.
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~   79 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLA   79 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhC
Confidence            4889999999999999999999999999988999999999997653  245799999999999999999998 6666666


Q ss_pred             cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC
Q psy15955        182 SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK  228 (475)
Q Consensus       182 ~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~  228 (475)
                      ...|.|+|||+|..+++++||++.+++..  .+.....|+++....+
T Consensus        80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~  124 (133)
T cd08384          80 KKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD  124 (133)
T ss_pred             CCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence            67899999999998899999999999986  3445678998865443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.84  E-value=1.2e-20  Score=156.43  Aligned_cols=116  Identities=28%  Similarity=0.378  Sum_probs=97.7

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      |+|+++++|  ..+.|.|.|++|+||+..+ .+.+||||++++.++.....+++|++++++.||.|||+|.|.++.+++.
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~   77 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ   77 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence            788999988  5789999999999999998 8899999999998877666678999999999999999999999877664


Q ss_pred             cceEEEEEEeccCCC-CCeeeEEEEEcCcCCCCCccccccc
Q psy15955        312 ECSLNVMVMDFDNIG-RNELIGRILLAGKNGSGASETKHWQ  351 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~-~d~~lG~~~i~l~~~~~~~~~~~w~  351 (475)
                       ..|.|+|||++... ++++||++.|++.+...++....|+
T Consensus        78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy  117 (119)
T cd08685          78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWY  117 (119)
T ss_pred             -CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceE
Confidence             36889999999875 4799999999987655443344443

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.84  E-value=1.5e-20  Score=158.26  Aligned_cols=121  Identities=31%  Similarity=0.577  Sum_probs=103.2

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEE-eeccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSF-NVPWE  308 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f-~v~~~  308 (475)
                      .|+|.+++.|.+..+.|.|+|++|+||+..+.. +.+||||++++.++.+  .++||++++++.||.|||+|.| .++..
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~~   79 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPYN   79 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCHH
Confidence            699999999999999999999999999998876 8899999999876543  3568999999999999999999 57766


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC--Cccccccccc
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG--ASETKHWQDM  353 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~--~~~~~~w~~~  353 (475)
                      ++.+..|.|+|||++.++++++||++.+++.+..-  ..++..|..+
T Consensus        80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            76667899999999999999999999999976533  2445556543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.84  E-value=9.2e-21  Score=161.77  Aligned_cols=122  Identities=38%  Similarity=0.661  Sum_probs=106.6

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      .|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.+.+.  ..++|+++++++||+|||+|.|. ++...
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~   79 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQ   79 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHH
Confidence            4899999999999999999999999999999999999999999965432  35689999999999999999999 66666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      +....|.|+|||++.++++++||++.+++...  +.....|+++...
T Consensus        80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             hCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            66678999999999999999999999999764  4555789888654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=2.4e-20  Score=160.75  Aligned_cols=124  Identities=27%  Similarity=0.429  Sum_probs=104.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecC-CCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR-TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS  196 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~  196 (475)
                      |.|+|++|++|++.+..|.+||||+|.+.   .+..+|+++.+ ++||+|||.|.|.   +.++....|.|+|||++..+
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~---v~~~~~~~l~v~V~d~~~~~   75 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFV---AAEPFEDHLILSVEDRVGPN   75 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEE---ecCccCCeEEEEEEEecCCC
Confidence            88999999999999999999999999993   46789998876 6999999999998   33334568999999999888


Q ss_pred             CCccccceeeccccccCC----CCcceeeccCCCCC--------CcccceeeeeeecCCceeE
Q psy15955        197 RDDSIGEVFLPLCQVDLS----EKPTFWKALKPPAK--------DKCGELLTSLCYHPSNSVL  247 (475)
Q Consensus       197 ~~~~iG~~~i~l~~l~~~----~~~~~~~~L~~~~~--------~~~G~l~l~l~~~~~~~~L  247 (475)
                      ++++||++.++|.++..+    .....|++|.+..+        +.+|+|+|.+.+.+...++
T Consensus        76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~  138 (150)
T cd04019          76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL  138 (150)
T ss_pred             CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence            899999999999998643    34579999987653        4679999999998665544

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.84  E-value=1.2e-20  Score=160.67  Aligned_cols=122  Identities=34%  Similarity=0.574  Sum_probs=105.6

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |+|.+++.|....+.|.|+|++|++|++.+..|.+||||+|++.+.+.  ...+|+++++++||+|||+|.|. ++...+
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~   79 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENV   79 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHh
Confidence            889999999999999999999999999999999999999999965432  35789999999999999999998 666666


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      ....|.|+|||++..+++++||++.+++.  ..+.....|+++....
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~  124 (134)
T cd08403          80 DNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANP  124 (134)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCC
Confidence            66679999999999999999999999987  3345567898886543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=1.9e-20  Score=157.91  Aligned_cols=121  Identities=27%  Similarity=0.390  Sum_probs=101.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccc-ccccccceEEEEEEeeCCC
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP-IQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~-~~~~~~~~L~~~V~d~d~~  195 (475)
                      +|.|+|++|++|+..+..+.+||||+|++.   .+++||+++.+++||+|||.|.|. +. ...+....|.|+|||.+..
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~   76 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRS   76 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCC
Confidence            489999999999999988999999999984   457799999999999999999998 33 2233346899999999988


Q ss_pred             C-CCccccceeecccccc-CCCCcceeeccCCCC--CCcccceeeeeeec
Q psy15955        196 S-RDDSIGEVFLPLCQVD-LSEKPTFWKALKPPA--KDKCGELLTSLCYH  241 (475)
Q Consensus       196 ~-~~~~iG~~~i~l~~l~-~~~~~~~~~~L~~~~--~~~~G~l~l~l~~~  241 (475)
                      + ++++||++.++++++. .+.....|++|....  +..+|+|++++.+.
T Consensus        77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            6 7999999999999997 455668999998653  34789999988763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.84  E-value=2e-20  Score=156.55  Aligned_cols=110  Identities=30%  Similarity=0.491  Sum_probs=99.8

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ecccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~  309 (475)
                      .|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.++.+  .+++|+++++ .||+|||+|.|. ++.++
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~   78 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEE   78 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHH
Confidence            6999999999999999999999999999999889999999998877643  4678999887 999999999998 88888


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      +.+..|.|+|||++.++++++||++.|++.+...
T Consensus        79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~  112 (124)
T cd08389          79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL  112 (124)
T ss_pred             hccCEEEEEEEECCCcccCceEEEEEEeccccCC
Confidence            8888999999999999999999999999866543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG1264|consensus

Probab=99.84  E-value=4.7e-21  Score=192.52  Aligned_cols=204  Identities=20%  Similarity=0.280  Sum_probs=154.1

Q ss_pred             HHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCC---CCCcccccccccCCCCCCCCcccccccccceeeeEe
Q psy15955         17 RFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSS---SSTPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYI   93 (475)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~~   93 (475)
                      .+.++-+.||||+|.++||+|++|.+-|...+...+..=..   .++..+..|+.||.|||+++|++|+...       .
T Consensus       979 ~ynr~qlSRVYPkGqRldSsNy~P~pmWn~GsqmVALN~QTgDKpMQmNqa~F~~ngrcGYvLqPs~Mrte~-------f 1051 (1267)
T KOG1264|consen  979 KYNRKQLSRVYPKGQRLDSSNYDPFPMWNCGSQMVALNFQTGDKPMQMNQALFSLNGRCGYVLQPSSMRTEK-------F 1051 (1267)
T ss_pred             ccccccceeecCCCcccccCCCCCcccccccceeEEeeccCCCchhhhhHHHhhcCCceeeEecchhccccc-------C
Confidence            46788899999999999999999988877666666655444   3455668899999999999999998765       2


Q ss_pred             CCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CCceE-EeeeecCCCCceee-ee
Q psy15955         94 DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRL-ETKIKRRTLNPRWN-ET  169 (475)
Q Consensus        94 ~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~-kT~v~~~~~nP~w~-e~  169 (475)
                      +|..+....|-         ..-.|.|.|+.||+|+... .|...|||+|.+.+.  +..++ +|.|+.|++||+|| |.
T Consensus      1052 dP~n~e~~~~l---------~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ 1121 (1267)
T KOG1264|consen 1052 DPMNPESQRGL---------LPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEK 1121 (1267)
T ss_pred             CCCChHHhccc---------cceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcc
Confidence            44444444443         2346889999999999543 455679999999643  33344 55588999999999 99


Q ss_pred             EEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC--cccceeeeeeecCC
Q psy15955        170 LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD--KCGELLTSLCYHPS  243 (475)
Q Consensus       170 f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~--~~G~l~l~l~~~~~  243 (475)
                      |.|+   +..+.-+.|+|.|+|.|+++...|||++++|+..+..|-   ...+|++.-.+  ....|.|.+...|.
T Consensus      1122 ftFe---I~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1122 FTFE---IYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred             eEEE---eeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccc
Confidence            9999   566677899999999999998899999999999997553   24566553322  23455555555543

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.84  E-value=1.4e-20  Score=160.03  Aligned_cols=123  Identities=28%  Similarity=0.475  Sum_probs=104.7

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.++..  ..++|+++++++||+|||+|.|. ++..++
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l   79 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEEL   79 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHh
Confidence            899999999999999999999999999999999999999999865432  35789999999999999999999 776677


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCC-CcceeeccCCCCC
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE-KPTFWKALKPPAK  228 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~~~~~L~~~~~  228 (475)
                      ....|.|+|||+|..+++++||++.+..  +..+. ...+|+.|.+..+
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~--~~~~~~~~~~W~~l~~~~~  126 (135)
T cd08410          80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQ--YSSGPSETNHWRRMLNSQR  126 (135)
T ss_pred             CCCEEEEEEEeCCCCCCCcEEEEEEEcC--ccCCchHHHHHHHHHhCCC
Confidence            6678999999999999999999988665  33333 3478999876544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.83  E-value=3e-20  Score=156.40  Aligned_cols=110  Identities=33%  Similarity=0.576  Sum_probs=98.4

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEee-cccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV-PWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v-~~~~  309 (475)
                      .|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.+ ...+
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   81 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET   81 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence            499999999999999999999999999999988999999999997655445678999999999999999999985 4455


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcC
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKN  340 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~  340 (475)
                      +....|.|+|||++..+++++||++.+++.+
T Consensus        82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence            6667899999999999999999999999865

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.83  E-value=9.1e-20  Score=152.85  Aligned_cols=121  Identities=41%  Similarity=0.637  Sum_probs=105.3

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      .|+|++++.|+...+.|.|+|++|++|+..+..+.+||||++++.+..  ....+|++++++.||+|||+|.|..++...
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~   80 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED   80 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence            489999999999999999999999999999988999999999996543  346799999999999999999996444445


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL  223 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L  223 (475)
                      +....|.|+|||++.. ++++||++.++|+++..++....|+.|
T Consensus        81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence            5567899999999988 789999999999999888777777654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.83  E-value=5.1e-20  Score=153.40  Aligned_cols=116  Identities=32%  Similarity=0.471  Sum_probs=100.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|+..+..+.+||||++++.+.+..++||++++++.||+|||+|.|. +...  ....|+|+|||+|.. +
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~   77 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-M   77 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-C
Confidence            78999999999999988999999999986544567799999999999999999998 4332  345799999999988 8


Q ss_pred             CccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeee
Q psy15955        198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCY  240 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~  240 (475)
                      +++||++.++++++..+.....|++|.+.   ..|+|.+.+.+
T Consensus        78 ~~~iG~~~~~l~~l~~g~~~~~~~~L~~~---~~g~l~~~~~~  117 (119)
T cd04036          78 DDHLGTVLFDVSKLKLGEKVRVTFSLNPQ---GKEELEVEFLL  117 (119)
T ss_pred             CcccEEEEEEHHHCCCCCcEEEEEECCCC---CCceEEEEEEe
Confidence            99999999999999988888999999753   47888887765

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.83  E-value=3.4e-20  Score=154.34  Aligned_cols=117  Identities=27%  Similarity=0.415  Sum_probs=99.8

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      |.|.|+|++|++|+..+..+.+||||+|++.   ....+|+++. ++.||+|||.|.|. ++..  ....|.|+|||++.
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~   74 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDK   74 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCC
Confidence            5799999999999999999999999999984   3567898875 57999999999998 4332  35689999999998


Q ss_pred             CCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeee
Q psy15955        195 FSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCY  240 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~  240 (475)
                      .+ +++||++.++++++..+.....|++|... ++..|+|.+.+.|
T Consensus        75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~-~~~~G~i~l~l~f  118 (118)
T cd08681          75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLK-GRYAGEVYLELTF  118 (118)
T ss_pred             CC-CcceEEEEEecHHHhhcCCCCCcEEeccC-CcEeeEEEEEEEC
Confidence            76 89999999999998777777899999764 4678999999876

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=8.1e-20  Score=151.57  Aligned_cols=114  Identities=30%  Similarity=0.479  Sum_probs=100.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      +.|.|++|++|+..+..+.+||||++++   ++.+.+|++++++.||.|||+|.|. +  .......|.|+|||++..++
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~--~~~~~~~l~v~v~d~~~~~~   75 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLH-L--FDDQSQILEIEVWDKDTGKK   75 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEE---CCEeEecccccCCCCCceeEEEEEE-e--cCCCCCEEEEEEEECCCCCC
Confidence            7899999999999998899999999998   3467899999999999999999998 3  33345789999999999889


Q ss_pred             CccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955        198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYH  241 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~  241 (475)
                      +++||++.++|+++..+.....|++|.+.    .|+|++.+.|.
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~----~G~~~~~~~~~  115 (116)
T cd08376          76 DEFIGRCEIDLSALPREQTHSLELELEDG----EGSLLLLLTLT  115 (116)
T ss_pred             CCeEEEEEEeHHHCCCCCceEEEEEccCC----CcEEEEEEEec
Confidence            99999999999999988888999999764    59998888764

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.83  E-value=4.5e-20  Score=153.60  Aligned_cols=120  Identities=19%  Similarity=0.360  Sum_probs=101.5

Q ss_pred             EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCC-CceeeeeEEeeccccccc
Q psy15955        104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTL-NPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       104 ~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~-nP~w~e~f~f~~~~~~~~  180 (475)
                      +|.+++.|.+..++|.|.|++|+||++.+..+.+||||+|++.+.++.  +.||+++++++ ||+|||+|.|+ ++.++ 
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~-   79 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQE-   79 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchh-
Confidence            689999999999999999999999999866677899999999765543  57899999996 69999999999 77765 


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      ....|.|+|||++..+++++||++.++..+. .+....+|.++...
T Consensus        80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~  124 (135)
T cd08692          80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIAN  124 (135)
T ss_pred             heeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhC
Confidence            3578999999999999999999999999874 33345788887543

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.82  E-value=8.2e-20  Score=153.67  Aligned_cols=121  Identities=38%  Similarity=0.647  Sum_probs=102.8

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ecccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~  309 (475)
                      .|+|++++.|.+....|.|.|++|+||+..+..+.+||||++++.+++.  .+++|++++++.||.|||+|.|. ++.+.
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~   79 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEK   79 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHH
Confidence            5999999999999999999999999999999889999999999865433  35799999999999999999998 45555


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      +.+..|.|+|||++..+++++||++.+++.+...+.....|.++
T Consensus        80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l  123 (125)
T cd08386          80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL  123 (125)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence            66678999999999999999999999998776554444555443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.82  E-value=1.1e-19  Score=154.29  Aligned_cols=113  Identities=32%  Similarity=0.555  Sum_probs=98.9

Q ss_pred             cccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeeccc
Q psy15955        101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFP  176 (475)
Q Consensus       101 ~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~  176 (475)
                      .+|+|.++++|+...+.|.|+|++|++|+..+..+.+||||+|++.+..    ...+||+++++++||+|||+|.|. +.
T Consensus         1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~   79 (133)
T cd04009           1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VP   79 (133)
T ss_pred             CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-ec
Confidence            3699999999999999999999999999999988999999999997543    346899999999999999999998 44


Q ss_pred             ccc--cccceEEEEEEeeCCCCCCccccceeeccccccCC
Q psy15955        177 IQK--LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS  214 (475)
Q Consensus       177 ~~~--~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~  214 (475)
                      ...  +....|.|+|||++..+++++||++.++|+++..-
T Consensus        80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            322  23568999999999998899999999999999643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.82  E-value=9e-20  Score=152.89  Aligned_cols=116  Identities=31%  Similarity=0.563  Sum_probs=99.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS  196 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~  196 (475)
                      +|.|+|++|++|+..+..+.+||||+|++   +....+|++++++.||+|||+|.|. +  .......|.|+|||++..+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~--~~~~~~~l~~~v~d~~~~~   74 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFE-L--MEGADSPLSVEVWDWDLVS   74 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEE---CCEEEeceeecCCCCCccCcEEEEE-c--CCCCCCEEEEEEEECCCCC
Confidence            48999999999999998889999999998   3456799999999999999999998 3  3333568999999999998


Q ss_pred             CCccccceeeccccccCCCCcceeeccCCC------CCCcccceeeee
Q psy15955        197 RDDSIGEVFLPLCQVDLSEKPTFWKALKPP------AKDKCGELLTSL  238 (475)
Q Consensus       197 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~------~~~~~G~l~l~l  238 (475)
                      ++++||++.++|.++..+.....|+.|.+.      .++..|.|.+.+
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          75 KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999999999999877777899999873      345667777765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.82  E-value=1.1e-19  Score=151.31  Aligned_cols=117  Identities=27%  Similarity=0.426  Sum_probs=99.3

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955        118 LILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS  196 (475)
Q Consensus       118 L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~  196 (475)
                      |.|.|++|++|+..+ ..|.+||||+|.+.  +...++|+++++++||+|||+|.|. ++..   ...|.|.|||++..+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~   75 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLR   75 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCC
Confidence            679999999999874 45789999999983  4346899999999999999999999 4422   358999999999999


Q ss_pred             CCccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeee
Q psy15955        197 RDDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCY  240 (475)
Q Consensus       197 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~  240 (475)
                      ++++||.+.++++++..+.....|++|.+..  ++.+|+|++++++
T Consensus        76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            9999999999999998877778999998742  3468999988764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.82  E-value=8e-20  Score=155.76  Aligned_cols=122  Identities=35%  Similarity=0.575  Sum_probs=107.8

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |+|++++.|+...++|.|.|++|++|+..+..+.+||||++++.+.+.  ..++|+++.++.||.|||+|.|. ++...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l   79 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQL   79 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHh
Confidence            899999999999999999999999999999888999999999976543  35689999999999999999999 666655


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      ....|.|+|||.+..+++++||++.+++++  .+.....|++|....
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            567899999999988889999999999999  566678999997654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.82  E-value=7e-20  Score=156.94  Aligned_cols=109  Identities=31%  Similarity=0.532  Sum_probs=92.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecc------------ccccccc
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGF------------PIQKLQS  182 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~------------~~~~~~~  182 (475)
                      +|.|+|++|++|+.  ..|.+||||+|++.+..  .++.+|+++++++||+|||+|.|.+-            +..++..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999998  56899999999997542  24678999999999999999999831            3334455


Q ss_pred             ceEEEEEEeeCCCCCCccccceeeccccccCC-CCcceeeccCCCC
Q psy15955        183 RVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS-EKPTFWKALKPPA  227 (475)
Q Consensus       183 ~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~~~~~L~~~~  227 (475)
                      ..|.|.|||++..++++|||++.|+|.++..+ .....||+|.+..
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            68999999999888999999999999999877 5678999998754

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=7.5e-20  Score=152.14  Aligned_cols=112  Identities=28%  Similarity=0.366  Sum_probs=95.6

Q ss_pred             EEEEEEEeec---CCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        118 LILRVISAKE---LPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       118 L~v~v~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      |.|+|++|++   |+.+|..|.+||||+|.+   +.++.||+++.+++||+|||+|.|.   +... ...|.|+|||++.
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~---g~~~~rTk~~~~~~nP~WnE~f~f~---v~~~-~~~l~v~V~d~d~   74 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY---GPKWVRTRTVEDSSNPRWNEQYTWP---VYDP-CTVLTVGVFDNSQ   74 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEE---CCEEeEcCcccCCCCCcceeEEEEE---ecCC-CCEEEEEEEECCC
Confidence            8999999999   889999999999999998   5567899999999999999999998   3332 3489999999998


Q ss_pred             CC------CCccccceeeccccccCCCCcceeeccCCCC---CCcccceee
Q psy15955        195 FS------RDDSIGEVFLPLCQVDLSEKPTFWKALKPPA---KDKCGELLT  236 (475)
Q Consensus       195 ~~------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~---~~~~G~l~l  236 (475)
                      .+      +|++||++.++|.++..+.....|++|....   .+..|+|..
T Consensus        75 ~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          75 SHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence            73      8999999999999998888888999998543   345676653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.82  E-value=1.6e-19  Score=151.53  Aligned_cols=119  Identities=31%  Similarity=0.521  Sum_probs=103.0

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      |+|.+++.|.+..+.|.|.|++|++|+..+ ..+.+||||++++.+++.  ..++|++++++.||+|||+|.|.++..++
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f~i~~~~l   78 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVFQVSFKEL   78 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence            899999999999999999999999999998 688899999999876543  34689999999999999999999987777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      ....|.|+|||++..+++++||++.+++.+.........|.+
T Consensus        79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~  120 (123)
T cd08390          79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRD  120 (123)
T ss_pred             cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEe
Confidence            667899999999998889999999999876655444445544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.81  E-value=2.7e-19  Score=150.51  Aligned_cols=120  Identities=20%  Similarity=0.400  Sum_probs=102.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|+.  ..|.+||||++++. ....+++|+++.++.||+|||.|.|. +..   ....|.|+|||++..++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~~~v~d~~~~~~   73 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFE-LSP---NSKELLFEVYDNGKKSD   73 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEE-eCC---CCCEEEEEEEECCCCCC
Confidence            5799999999998  67899999999984 22356899999999999999999998 432   24679999999999888


Q ss_pred             CccccceeeccccccCCCCcceeeccCCCC---CCcccceeeeeeecCCc
Q psy15955        198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPA---KDKCGELLTSLCYHPSN  244 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~---~~~~G~l~l~l~~~~~~  244 (475)
                      +++||++.+++.++........|++|.+..   ....|+|.+.+.|.+..
T Consensus        74 ~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          74 SKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             CceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            999999999999998888788999998763   45789999999997654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=3.8e-19  Score=150.30  Aligned_cols=119  Identities=34%  Similarity=0.535  Sum_probs=100.8

Q ss_pred             CEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        116 STLILRVISAKELPAKDM--SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      |.|.|.|++|++|+..+.  .+.+||||+|.+   +...++|++++++.||+|||.|.|.   +..+....|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~---~~~~~kT~~~~~t~~P~Wne~f~~~---~~~~~~~~l~i~v~d~~   74 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFP---IFSAQNQLLKLILWDKD   74 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE---CCEEEecceecCCcCCccCCcEEEE---ecCCCCCEEEEEEEECC
Confidence            568999999999999988  889999999998   4467899999999999999999998   33344678999999999


Q ss_pred             CCCCCccccceeeccccccC---CCCcceeeccCCCCC----Ccccceeeeeee
Q psy15955        194 RFSRDDSIGEVFLPLCQVDL---SEKPTFWKALKPPAK----DKCGELLTSLCY  240 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~---~~~~~~~~~L~~~~~----~~~G~l~l~l~~  240 (475)
                      ..+++++||++.++|.++..   ......|++|.+...    ...|+|++.+.+
T Consensus        75 ~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          75 RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            98889999999999999873   344578999987632    368999988764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=2.5e-19  Score=149.18  Aligned_cols=112  Identities=34%  Similarity=0.550  Sum_probs=95.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|+..    .+||||+|++.   ..+.+|++++++.||+|||+|.|.   ...+....|.|+|||+|.. +
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~---~~~~~~~~L~~~v~d~d~~-~   70 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFS---KDRLQGSTLEVSVWDKDKA-K   70 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEE---cCCCcCCEEEEEEEeCCCC-c
Confidence            88999999999987    68999999984   357799999999999999999998   4444567899999999976 7


Q ss_pred             CccccceeeccccccCCC-----CcceeeccCCCCC-Ccccceeeeeee
Q psy15955        198 DDSIGEVFLPLCQVDLSE-----KPTFWKALKPPAK-DKCGELLTSLCY  240 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~~~-~~~G~l~l~l~~  240 (475)
                      +++||++.++++++....     ....|++|.+..+ +.+|+|++++.|
T Consensus        71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            899999999999986543     2468999987653 678999999877

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=4.5e-19  Score=148.93  Aligned_cols=119  Identities=24%  Similarity=0.414  Sum_probs=98.8

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      ..|.|+|++|++|+..   +.+||||+|.+.  +.+..+|+++ ++.||.|||+|.|.. ...  ....+.|.|||++..
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v~-~~~nP~WnE~f~f~~-~~~--~~~~l~v~v~d~~~~   74 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKVR-EGPNPVWSEEFVFDD-LPP--DVNSFTISLSNKAKR   74 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeecC-CCCCCccCCEEEEec-CCC--CcCEEEEEEEECCCC
Confidence            4699999999999975   468999999993  3345689875 689999999999973 222  224688999999999


Q ss_pred             CCCccccceeeccccccCCCCcceeeccCCCC---CCcccceeeeeeecCC
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA---KDKCGELLTSLCYHPS  243 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~---~~~~G~l~l~l~~~~~  243 (475)
                      +++++||++.+||+++..+.....|++|.+..   ....|+|++++.|.+.
T Consensus        75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          75 SKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            99999999999999998888888999998764   3567999999999753

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.80  E-value=3.5e-19  Score=151.24  Aligned_cols=118  Identities=29%  Similarity=0.483  Sum_probs=98.2

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      ..|.|.|+|++|++|+..+..|.+||||++++   +...++|+++++++||.|||+|.|.   +.++....|.|+|||+|
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~---~~~~~kT~vi~~t~nP~Wne~f~f~---v~~~~~~~l~i~V~D~d   86 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM---GSQEHKTKVVSDTLNPKWNSSMQFF---VKDLEQDVLCITVFDRD   86 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE---CCEeeeccccCCCCCCccCceEEEE---ecCccCCEEEEEEEECC
Confidence            35679999999999999999999999999998   4567899999999999999999998   33445678999999999


Q ss_pred             CCCCCccccceeeccccccCCC-----CcceeeccCCCCCCcccceeeeeee
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSE-----KPTFWKALKPPAKDKCGELLTSLCY  240 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~G~l~l~l~~  240 (475)
                      ..++|++||++.++|.++....     ....|..+   .+...|+|++++.+
T Consensus        87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~  135 (136)
T cd08375          87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence            9989999999999999987521     12234444   35678999998875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.80  E-value=3.2e-19  Score=146.49  Aligned_cols=106  Identities=30%  Similarity=0.547  Sum_probs=90.1

Q ss_pred             CEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEeeC
Q psy15955        116 STLILRVISAKELPAKDMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYD  193 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d  193 (475)
                      |.|.|+|++|++|+..+.. +.+||||+|++.+.+...++|+++++++||+|||+|.|. +...++ ....|.|+|||+|
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCC
Confidence            5799999999999999988 899999999996655567899999999999999999997 333222 3468999999999


Q ss_pred             CCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      ..+++++||++.+++.++.   ....|++++.
T Consensus        80 ~~~~dd~lG~~~i~l~~l~---~~~~~~~~~~  108 (111)
T cd04041          80 RFTADDRLGRVEIDLKELI---EDRNWMGRRE  108 (111)
T ss_pred             CCCCCCcceEEEEEHHHHh---cCCCCCcccc
Confidence            9999999999999999997   3456888753

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>KOG1030|consensus

Probab=99.79  E-value=3.3e-19  Score=150.10  Aligned_cols=96  Identities=38%  Similarity=0.631  Sum_probs=86.2

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      .|-|.|.|++|.+|..+|..+++||||++.+   ++++.||+++++++||+|||+|.|.   +.++ ...|+++|||+|.
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l---g~q~lkT~~v~~n~NPeWNe~ltf~---v~d~-~~~lkv~VyD~D~   77 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL---GNQKLKTRVVYKNLNPEWNEELTFT---VKDP-NTPLKVTVYDKDT   77 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEE---CCeeeeeeeecCCCCCcccceEEEE---ecCC-CceEEEEEEeCCC
Confidence            4579999999999999998899999999999   6778899999999999999999998   4453 4689999999999


Q ss_pred             CCCCccccceeeccccccCCCCc
Q psy15955        195 FSRDDSIGEVFLPLCQVDLSEKP  217 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~~~~~~  217 (475)
                      ++.||+||.++|+|..+......
T Consensus        78 fs~dD~mG~A~I~l~p~~~~~~~  100 (168)
T KOG1030|consen   78 FSSDDFMGEATIPLKPLLEAQKM  100 (168)
T ss_pred             CCcccccceeeeccHHHHHHhhh
Confidence            99999999999999998765543

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.79  E-value=9.7e-19  Score=148.80  Aligned_cols=119  Identities=34%  Similarity=0.578  Sum_probs=100.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      |.|+|++|++|+..+..+.+||||+|++.+..    ....+|+++++++||+|||+|.|. +..   ....|.|+|||++
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~~~v~d~~   77 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNP---REHRLLFEVFDEN   77 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcC---CCCEEEEEEEECC
Confidence            88999999999999988999999999996431    124689999999999999999998 332   2357999999999


Q ss_pred             CCCCCccccceeeccccccCCCC------cceeeccCCCC--CCcccceeeeeee
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEK------PTFWKALKPPA--KDKCGELLTSLCY  240 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~------~~~~~~L~~~~--~~~~G~l~l~l~~  240 (475)
                      ..+++++||++.+++.++..+..      ...|++|.+..  ++..|+|++++.|
T Consensus        78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            99999999999999999976543      35899998653  4578999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.79  E-value=7.3e-19  Score=144.92  Aligned_cols=97  Identities=25%  Similarity=0.312  Sum_probs=80.9

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEe--CceeeeeeecccccCCCCCeecceEEEeeccc-ccccceEEEEEEec
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQF--GEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE-KIRECSLNVMVMDF  322 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~l~~~~l~i~V~d~  322 (475)
                      .|.|+|++|++|+..+ .|.+||||+|++..  .+....+++|+++.+++||+|||+|.|.++.+ .+....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4889999999999887 48999999999853  22333467899999999999999999999754 45567899999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      +..+++++||++.+++.+...
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~  100 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQ  100 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcC
Confidence            988889999999998865443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.78  E-value=1.8e-18  Score=146.62  Aligned_cols=121  Identities=33%  Similarity=0.543  Sum_probs=103.7

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      +|+|.++++|..  +.|.|+|++|++|+..+..+.+||||+|.+.+.+  ...++|+++.++.||.|||+|.|. +...+
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~   77 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD   77 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence            599999999965  9999999999999999888899999999996432  356899999999999999999998 43322


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                       ....|.|+|||++..+++++||++.++|+++... ....|++|.+..
T Consensus        78 -~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~  123 (131)
T cd04026          78 -KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE  123 (131)
T ss_pred             -cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence             2468999999999888899999999999999754 668899997643

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.78  E-value=7.7e-19  Score=143.98  Aligned_cols=104  Identities=32%  Similarity=0.570  Sum_probs=90.6

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCCceEEeeeecCCCCcee-eeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        118 LILRVISAKELPAKDM-SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRW-NETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w-~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      |.|+|++|++|+..+. .+.+||||+|++.   ..++||+++++++||+| ||+|.|. ++...+....|.|+|||++..
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~   76 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTY   76 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCC
Confidence            5799999999999884 6889999999994   36789999999999999 9999998 666555567899999999999


Q ss_pred             CCCccccceeeccccccC---CCCcceeeccCC
Q psy15955        196 SRDDSIGEVFLPLCQVDL---SEKPTFWKALKP  225 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~---~~~~~~~~~L~~  225 (475)
                      +++++||++.+++.++..   ......||+|..
T Consensus        77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            999999999999999977   344678999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.78  E-value=1.3e-18  Score=145.44  Aligned_cols=115  Identities=32%  Similarity=0.511  Sum_probs=98.1

Q ss_pred             CEEEEEEEEeecCCCCCC------CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEE
Q psy15955        116 STLILRVISAKELPAKDM------SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHV  189 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V  189 (475)
                      |.|.|+|++|++|+..+.      .+.+||||+|++.   .+.++|++++++.||+|||.|.|. +  .......|.|+|
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~-v--~~~~~~~l~i~v   74 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAV-V--DEVPGQELEIEL   74 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEE-e--CCCCCCEEEEEE
Confidence            468999999999998875      3689999999993   367899999999999999999987 3  333457899999


Q ss_pred             EeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeee
Q psy15955        190 FDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCY  240 (475)
Q Consensus       190 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~  240 (475)
                      ||++.. ++++||.+.++++++..++....|++|.+.   ..|+|++.+++
T Consensus        75 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~~~~~~~~  121 (121)
T cd08391          75 FDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---KSGRLHLKLEW  121 (121)
T ss_pred             EecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC---CCceEEEEEeC
Confidence            999987 889999999999999887777899999753   67999888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.78  E-value=1.6e-18  Score=145.61  Aligned_cols=121  Identities=31%  Similarity=0.472  Sum_probs=100.7

Q ss_pred             CEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        116 STLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      |.|.|+|++|++|+..+ ..+.+||||+|.+.+. ...++|+++.++.||.|||.|.|. +.   .....|.|+|||++.
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~-v~---~~~~~l~~~v~d~~~   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYIL-VN---SLTEPLNLTVYDFND   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEE-eC---CCCCEEEEEEEecCC
Confidence            56999999999999765 3467999999999532 357899999999999999999998 43   235789999999999


Q ss_pred             CCCCccccceeeccccccCCCCcc-eeeccCCCCCCcccceeeeeeecC
Q psy15955        195 FSRDDSIGEVFLPLCQVDLSEKPT-FWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      .+++++||.+.++|.++....... .|+.+. ..++..|+|+++++|.|
T Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~-~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLL-RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCceeEEEEEEHHHhccCccccCcchhhh-cCCccceEEEEEEEeCC
Confidence            888999999999999998776654 345554 46678899999999976

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.78  E-value=2.4e-18  Score=146.48  Aligned_cols=122  Identities=29%  Similarity=0.546  Sum_probs=98.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccc----cc--ccceEEEEEE
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQ----KL--QSRVLHLHVF  190 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~----~~--~~~~L~~~V~  190 (475)
                      +|+|+|++|++|+..+..|.+||||+|++.   ..+.+|+++++++||+|||.|.|....+.    .+  ....|.|+||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            589999999999999999999999999983   45789999999999999999999732221    11  1246999999


Q ss_pred             eeCCCCCCccccceee-ccccccC---CCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        191 DYDRFSRDDSIGEVFL-PLCQVDL---SEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      |+|..+++++||++.+ |+..+..   +.....|++|.. .+...|+|++++++.+
T Consensus        79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~~~~Geil~~~~~~~  133 (135)
T cd04017          79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GGQSAGELLAAFELIE  133 (135)
T ss_pred             eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CCCchhheeEEeEEEE
Confidence            9999999999999986 5544432   345579999974 3568999999998864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.78  E-value=2.1e-18  Score=146.37  Aligned_cols=112  Identities=38%  Similarity=0.532  Sum_probs=97.6

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCce--eeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK--RIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      .|+|.+++.|.+....|.|.|++|++|+..+..+.+||||+|++.+...  ...+++|++++++.||+|||+|.|.+...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~   81 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE   81 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence            5999999999999999999999999999999889999999999865432  24578999999999999999999998753


Q ss_pred             c--cccceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        309 K--IRECSLNVMVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       309 ~--l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      +  +.+..|.|+|||++..+++++||++.+++.+..
T Consensus        82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            2  345689999999999999999999999886544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.78  E-value=2.8e-18  Score=149.54  Aligned_cols=121  Identities=24%  Similarity=0.344  Sum_probs=100.4

Q ss_pred             CCCEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEeCCCCceEEeeeecCCCC
Q psy15955        114 DNSTLILRVISAKELPAKD------------------------------MSGTSDPYVKVALLPDKKHRLETKIKRRTLN  163 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~n  163 (475)
                      -+|.|.|+|++|++|+.+|                              ..|.+||||+|++.  +.+..||++++++.|
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~n   82 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSEN   82 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCC
Confidence            4678999999999999987                              24678999999993  334569999999999


Q ss_pred             ceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC---Ccccceeeeeee
Q psy15955        164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK---DKCGELLTSLCY  240 (475)
Q Consensus       164 P~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~---~~~G~l~l~l~~  240 (475)
                      |+|||+|.|. +  ... ...|.|.|||+|..+ +++||.+.+|++++..+.....|++|....+   ...|+|++++.|
T Consensus        83 P~WnE~F~~~-~--~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          83 PVWNESFHIY-C--AHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             CccceEEEEE-c--cCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            9999999987 3  332 357999999999875 5899999999999988888889999987543   346899999887


Q ss_pred             c
Q psy15955        241 H  241 (475)
Q Consensus       241 ~  241 (475)
                      .
T Consensus       158 ~  158 (158)
T cd04015         158 T  158 (158)
T ss_pred             C
Confidence            4

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.77  E-value=3e-18  Score=143.00  Aligned_cols=116  Identities=33%  Similarity=0.511  Sum_probs=97.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|++.+..|.+||||+|.+.  +....||+++.+++||+|||.|.|. ++  . ....|.|+|||++..++
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~--~-~~~~l~v~v~d~~~~~~   75 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVH-LP--P-GFHTVSFYVLDEDTLSR   75 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEe-eC--C-CCCEEEEEEEECCCCCC
Confidence            78999999999999999999999999983  3345799999999999999999998 33  2 23689999999999999


Q ss_pred             CccccceeeccccccCC-CCcceeeccCCC--CCCcccceeeeee
Q psy15955        198 DDSIGEVFLPLCQVDLS-EKPTFWKALKPP--AKDKCGELLTSLC  239 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~-~~~~~~~~L~~~--~~~~~G~l~l~l~  239 (475)
                      +++||++.+++.++... .....|++|.+.  .+...|+|++.+.
T Consensus        76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999999999988754 336789999763  3456799988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.77  E-value=2.7e-18  Score=144.72  Aligned_cols=118  Identities=24%  Similarity=0.392  Sum_probs=100.5

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccc
Q psy15955        122 VISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSI  201 (475)
Q Consensus       122 v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~i  201 (475)
                      |++|++|+.  ..+.+||||+|++   +..+++|++++++.||+|||+|.|. +.........|.|+|||++..+++++|
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~---~~~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~i   75 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTF---RGVKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLI   75 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEE---CCEeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceE
Confidence            689999999  6789999999998   3456799999999999999999998 332223467899999999998899999


Q ss_pred             cceeeccccccCCCCcceeeccCCCCCC-cccceeeeeeecCCce
Q psy15955        202 GEVFLPLCQVDLSEKPTFWKALKPPAKD-KCGELLTSLCYHPSNS  245 (475)
Q Consensus       202 G~~~i~l~~l~~~~~~~~~~~L~~~~~~-~~G~l~l~l~~~~~~~  245 (475)
                      |++.++|.++..+.....|++|.+..+. ..|+|.++++|.|..+
T Consensus        76 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          76 GSATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEEEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence            9999999999988888899999865544 5799999999988654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.77  E-value=5.2e-18  Score=141.40  Aligned_cols=116  Identities=33%  Similarity=0.568  Sum_probs=98.7

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      |.|.|+|++|++|+..+..+.+||||+|++.   ...++|++++++.||.|+|+|.|.   +.++ ...|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~---~~~~-~~~l~~~v~d~~~~   73 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFP---IKDI-HDVLEVTVYDEDKD   73 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEE---ecCc-CCEEEEEEEECCCC
Confidence            4689999999999999999999999999983   345799999999999999999998   3332 46899999999988


Q ss_pred             CCCccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeee
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCY  240 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~  240 (475)
                      +++++||++.+++.++..+  ...|+.|.+..  ....|+|.+++.+
T Consensus        74 ~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          74 KKPEFLGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             CCCceeeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence            8899999999999998654  35799997654  3468999998875

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.77  E-value=4.4e-18  Score=142.65  Aligned_cols=113  Identities=35%  Similarity=0.534  Sum_probs=98.5

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ecccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEK  309 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~  309 (475)
                      .|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++++.++.....+++|++++++.||.|||+|.|. +...+
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~   80 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED   80 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence            38999999999999999999999999999988889999999998765544567899999999999999999996 55455


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCC
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGA  344 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~  344 (475)
                      +.+..|.|+|||++.. ++++||++.+++.++...
T Consensus        81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence            5556899999999988 899999999988765543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG0696|consensus

Probab=99.76  E-value=5.8e-19  Score=167.20  Aligned_cols=126  Identities=33%  Similarity=0.567  Sum_probs=109.0

Q ss_pred             CCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEe
Q psy15955         95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYF  172 (475)
Q Consensus        95 ~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f  172 (475)
                      ..+..+.+|+|.+.++.  ....|.|.|.+|+||.++|.+|.+||||++.+.|+.+  .++||++++.++||+|||+|.|
T Consensus       161 G~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf  238 (683)
T KOG0696|consen  161 GTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTF  238 (683)
T ss_pred             CCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEE
Confidence            45667889999988887  7889999999999999999999999999999988754  3579999999999999999999


Q ss_pred             ecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       173 ~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      . +...+ ..+.|.|+|||||+.+++||+|..++.+++|... ....||.|..
T Consensus       239 ~-Lkp~D-kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLs  288 (683)
T KOG0696|consen  239 K-LKPSD-KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLS  288 (683)
T ss_pred             e-ccccc-ccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhh
Confidence            9 43333 3578999999999999999999999999999654 3478988864

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.76  E-value=8.1e-18  Score=141.70  Aligned_cols=118  Identities=27%  Similarity=0.434  Sum_probs=98.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS  196 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~  196 (475)
                      .|.|+|++|++|+..+..+.+||||+|.+.+.+...+||+++++++||.|||+|.|. +...  ....|.|+|||++..+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~~   78 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFVG   78 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCCC
Confidence            589999999999999999999999999975443456799999999999999999998 3332  3568999999999988


Q ss_pred             CCccccceeeccccccCC---CCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        197 RDDSIGEVFLPLCQVDLS---EKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       197 ~~~~iG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      ++++||++.++|+++...   .....|++|.+     .|+|++.+.+..
T Consensus        79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-----~g~i~l~~~~~~  122 (126)
T cd04043          79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-----QGRLLLRVSMEG  122 (126)
T ss_pred             CCceEEEEEEecCHHHcCCCCCCceEEEEcCC-----CCeEEEEEEEee
Confidence            899999999999886443   34578999975     488888877753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.76  E-value=8.6e-18  Score=144.10  Aligned_cols=124  Identities=19%  Similarity=0.254  Sum_probs=101.0

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEE-eC-CCCceEEeeeecCCCCceeeeeEEeeccccc------ccccceEEE
Q psy15955        118 LILRVISAKE--LPAKDMSGTSDPYVKVAL-LP-DKKHRLETKIKRRTLNPRWNETLYFEGFPIQ------KLQSRVLHL  187 (475)
Q Consensus       118 L~v~v~~a~~--L~~~~~~~~~dpyv~v~l-~~-~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~------~~~~~~L~~  187 (475)
                      ..++|+.|++  |+..+..+.+||||++++ .| .+.++.||+++++|+||+|||+|.|. ++..      .+....|.|
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEE
Confidence            4556666666  677777788999999997 34 45568899999999999999999998 5543      244567999


Q ss_pred             EEEeeCCC-CCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        188 HVFDYDRF-SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       188 ~V~d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      +|||.+.+ .+|++||++.++|+.+........|++|........|+|++.+..-.
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence            99999986 57999999999999998877777899998766677889988887654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.75  E-value=6.9e-18  Score=141.21  Aligned_cols=114  Identities=24%  Similarity=0.398  Sum_probs=94.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |+|+|++|++|+..+..+.+||||++++.  +.+.++|+++++++||.|||+|.|. ++  .  ...|.|+|||++..++
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~-~~--~--~~~l~i~V~d~~~~~~   74 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLT-VG--P--SSIITIQVFDQKKFKK   74 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEE-eC--C--CCEEEEEEEECCCCCC
Confidence            78999999999999999999999999983  3567899999999999999999998 33  2  5689999999998765


Q ss_pred             --CccccceeeccccccCCCC-cceeeccCCCCC----Ccccceeeee
Q psy15955        198 --DDSIGEVFLPLCQVDLSEK-PTFWKALKPPAK----DKCGELLTSL  238 (475)
Q Consensus       198 --~~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~----~~~G~l~l~l  238 (475)
                        +++||++.+++.++..... ...|++|.....    ...|+|.+.+
T Consensus        75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence              5899999999999865543 367999965442    3467777654

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.75  E-value=5.9e-18  Score=137.54  Aligned_cols=100  Identities=28%  Similarity=0.408  Sum_probs=86.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|+..+..+.+||||+|++.   ++.++|+++.++.||+|||+|.|.   +..+....|.|+|||.+.   
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~---v~~~~~~~l~v~v~d~~~---   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFL---VRNPENQELEIEVKDDKT---   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEE---eCCCCCCEEEEEEEECCC---
Confidence            78999999999999988999999999993   367899999999999999999998   333445689999999886   


Q ss_pred             CccccceeeccccccCCC--CcceeeccCCC
Q psy15955        198 DDSIGEVFLPLCQVDLSE--KPTFWKALKPP  226 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~--~~~~~~~L~~~  226 (475)
                      +++||++.++|.++....  ....|++|.+.
T Consensus        73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence            789999999999997654  45789999754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.75  E-value=8.3e-18  Score=141.49  Aligned_cols=106  Identities=25%  Similarity=0.447  Sum_probs=85.9

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc---cccccceEEEEEEecc
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW---EKIRECSLNVMVMDFD  323 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~l~~~~l~i~V~d~~  323 (475)
                      ++|+|++|+||+..+..|.+||||++++.     ..+++|++++++.||+|||+|.|.++.   .++....|.|+|||++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~   75 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN   75 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence            47999999999999999999999999873     235689999999999999999999875   2344568999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        324 NIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      .+++|++||++.|++.+..            ..++.....|++|..
T Consensus        76 ~~~~d~~iG~~~i~l~~l~------------~~~~~~~~~W~~L~~  109 (126)
T cd08682          76 LLGLDKFLGQVSIPLNDLD------------EDKGRRRTRWFKLES  109 (126)
T ss_pred             ccCCCceeEEEEEEHHHhh------------ccCCCcccEEEECcC
Confidence            9999999999999885432            122344567777764

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.74  E-value=1.1e-17  Score=143.40  Aligned_cols=96  Identities=25%  Similarity=0.414  Sum_probs=81.2

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec-------------cccccc
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP-------------WEKIRE  312 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~-------------~~~l~~  312 (475)
                      .|.|.|++|+||+.  ..|.+||||+|++.+......+++|++++++.||+|||+|.|.+.             ..++..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            47899999999998  568899999999976554445679999999999999999999984             335555


Q ss_pred             ceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        313 CSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       313 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      ..|.|.|||++..++++|||++.|++.....
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~  109 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDL  109 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccc
Confidence            6899999999998899999999998865443

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.74  E-value=1.8e-17  Score=137.25  Aligned_cols=114  Identities=34%  Similarity=0.580  Sum_probs=98.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|+..+..+.+||||+|.+.  +...++|+++.++.+|+|||+|.|. ++  ......|.|+|||++..++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~-~~--~~~~~~l~~~v~d~~~~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVP-VP--SRVRAVLKVEVYDWDRGGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEE-ec--cCCCCEEEEEEEeCCCCCC
Confidence            57899999999999988899999999984  3456799999999999999999998 33  3245689999999999888


Q ss_pred             CccccceeeccccccCCCCcceeeccCCCCCCcccceee
Q psy15955        198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLT  236 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l  236 (475)
                      +++||++.+++.++..+.....|++|.+.++...|.|.+
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          76 DDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             CCceEEEEEEHHHcCCCCcEEEEEECcCCCCccCceEEc
Confidence            999999999999998888888999999887777777653

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.74  E-value=2.1e-17  Score=140.20  Aligned_cols=116  Identities=28%  Similarity=0.405  Sum_probs=98.2

Q ss_pred             CCEEEEEEEEeecCCCCCCC----------CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccce
Q psy15955        115 NSTLILRVISAKELPAKDMS----------GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRV  184 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~  184 (475)
                      .+.|.|+|++|++|+..+..          +.+||||++.+.  +....+|+++.++.||.|||+|.|. ++    ....
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~~~   75 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTE-VH----NGRN   75 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEE-cC----CCCE
Confidence            35799999999999988862          578999999993  3445699999999999999999998 43    3468


Q ss_pred             EEEEEEeeCCCCCCccccceeeccccccC--CCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        185 LHLHVFDYDRFSRDDSIGEVFLPLCQVDL--SEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       185 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      |.|.|||++..+++++||++.++|+++..  +.....|++|.+     .|.|++.+.+..
T Consensus        76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-----~G~l~l~~~~~~  130 (132)
T cd04014          76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-----QGKLHVKIELKG  130 (132)
T ss_pred             EEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-----CcEEEEEEEEec
Confidence            99999999988889999999999999987  456789999973     589999888754

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.74  E-value=1.3e-17  Score=135.65  Aligned_cols=96  Identities=25%  Similarity=0.388  Sum_probs=80.9

Q ss_pred             CEEEEEEEEeecCCCCCCC----CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEe
Q psy15955        116 STLILRVISAKELPAKDMS----GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFD  191 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d  191 (475)
                      |.|.|+|++|++|+..+..    +.+||||+|++   +++.+||+++++++||+|||.|.|. +.... ....|.|+|||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~---~~~~~kT~v~~~t~nPvWne~f~f~-v~~~~-~~~~L~~~V~D   75 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFE-VYPHE-KNFDIQFKVLD   75 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE---CCEeEeeeeecCCCCCcccceEEEE-EeCcc-CCCEEEEEEEE
Confidence            5699999999999987642    35899999998   4567899999999999999999998 33222 24589999999


Q ss_pred             eCCCCCCccccceeeccccccCCCC
Q psy15955        192 YDRFSRDDSIGEVFLPLCQVDLSEK  216 (475)
Q Consensus       192 ~d~~~~~~~iG~~~i~l~~l~~~~~  216 (475)
                      +|..+++++||++.++|++|..+..
T Consensus        76 ~d~~~~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          76 KDKFSFNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCCCCCCcceEEEEEEHHHHHhhCC
Confidence            9999999999999999999976544

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=1.6e-17  Score=136.23  Aligned_cols=106  Identities=26%  Similarity=0.414  Sum_probs=85.4

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      +.|.|+|++|++|+..+   ..||||+|.+   ++++.+|++.++ .||.|||+|.|.   +.+.. ..|.|+|||.|.+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~---g~~k~kT~v~~~-~nP~WnE~F~F~---~~~~~-~~L~v~V~dkd~~   70 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV---QNVKSTTIAVRG-SQPCWEQDFMFE---INRLD-LGLVIELWNKGLI   70 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEE---CCEEeEeeECCC-CCCceeeEEEEE---EcCCC-CEEEEEEEeCCCc
Confidence            46999999999998655   3489999999   456788999887 499999999998   44444 3499999999965


Q ss_pred             CCCccccceeeccccccCCCCc--ceeeccCCCCCCcccc
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEKP--TFWKALKPPAKDKCGE  233 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~G~  233 (475)
                       .|++||++.|+|.++..+...  ..||+|.+......|+
T Consensus        71 -~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~  109 (127)
T cd08394          71 -WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQ  109 (127)
T ss_pred             -CCCceEEEEEEhHHcccCCCCCCCccEecChHHhccCCe
Confidence             899999999999999866655  7999998643333333

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>KOG0696|consensus

Probab=99.74  E-value=2e-18  Score=163.63  Aligned_cols=123  Identities=33%  Similarity=0.519  Sum_probs=106.8

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      +.+|.|.+.+..  ....|.|+|.+|+||.++|.+|.+||||++.+.++.+...+++|++++.++||+|||+|.|.+.++
T Consensus       166 E~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~  243 (683)
T KOG0696|consen  166 ERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPS  243 (683)
T ss_pred             hhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccc
Confidence            567999888877  577999999999999999999999999999999988888899999999999999999999999877


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMIT  355 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~  355 (475)
                      +- ++.|.|+|||||+.++++|||...+.+.++.+ .....|+.+++
T Consensus       244 Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLs  288 (683)
T KOG0696|consen  244 DK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLS  288 (683)
T ss_pred             cc-cceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhh
Confidence            74 67899999999999999999999997765443 24455666554

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.74  E-value=2.3e-17  Score=139.92  Aligned_cols=120  Identities=31%  Similarity=0.481  Sum_probs=99.1

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      +|+|.+++.|.+  +.|.|+|++|++|+..+..+.+||||+|++...+....+++|++++++.||.|||+|.|.+...+.
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~   78 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK   78 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc
Confidence            589999999987  889999999999999888889999999998654444457899999999999999999999875442


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMI  354 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~  354 (475)
                       ...|.|+|||++..+++++||++.+++.+.... ....|.++.
T Consensus        79 -~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~  120 (131)
T cd04026          79 -DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLL  120 (131)
T ss_pred             -CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence             457999999999988999999999988665532 334454443

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=2.5e-17  Score=138.69  Aligned_cols=113  Identities=31%  Similarity=0.508  Sum_probs=93.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC-
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF-  195 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~-  195 (475)
                      .|.|+|++|++|+..+..+.+||||+|++.   ....+|+++.+++||.|||+|.|. +  ... ...|.|+|||+|.. 
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~-~--~~~-~~~l~i~v~d~d~~~   74 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFE-C--HNS-SDRIKVRVWDEDDDI   74 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEE-e--cCC-CCEEEEEEEECCCCc
Confidence            589999999999999988999999999983   356799999999999999999997 2  222 35799999999852 


Q ss_pred             ----------CCCccccceeeccccccCCCCcceeeccCCCCC--Ccccceeeee
Q psy15955        196 ----------SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK--DKCGELLTSL  238 (475)
Q Consensus       196 ----------~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~G~l~l~l  238 (475)
                                +.+++||++.+++.++.  +....|+.|.+...  ..+|+|.+++
T Consensus        75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          75 KSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence                      46899999999999874  34579999987543  4678888764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.73  E-value=1.2e-17  Score=140.49  Aligned_cols=117  Identities=30%  Similarity=0.378  Sum_probs=98.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeeccccccc--ccceEEEEEEeeC
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKL--QSRVLHLHVFDYD  193 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~--~~~~L~~~V~d~d  193 (475)
                      +|.|+|++|++|+..+..+.+||||+|++.+  ..+.+|+++. ++.||+|||.|.|. ++...+  ....|.|+|||++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~   77 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCER   77 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECC
Confidence            4889999999999999889999999999943  3567899875 58999999999998 443321  2468999999999


Q ss_pred             CCCCCccccceeeccccccCCCC-----cceeeccCCCCCCcccceee
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEK-----PTFWKALKPPAKDKCGELLT  236 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~G~l~l  236 (475)
                      ..+++++||++.++|.++..+..     ...||+|....++..|.|.+
T Consensus        78 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          78 PSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            88889999999999999976654     36899999888889998864

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.73  E-value=5.2e-17  Score=136.49  Aligned_cols=117  Identities=20%  Similarity=0.323  Sum_probs=95.3

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      ..|.|+|++|++|+..+..|.+||||++.+   +.+.++|++++++.||+|||.|.|.   ... ....|.|+|||++..
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~---~~~-~~~~l~i~V~d~~~~   75 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKC---EGESVRSPVQKDTLSPEFDTQAIFY---RKK-PRSPIKIQVWNSNLL   75 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEE---CCEEEEeCccCCCCCCcccceEEEE---ecC-CCCEEEEEEEECCCC
Confidence            469999999999999999999999999998   3457899999999999999999987   223 256899999999987


Q ss_pred             CCCccccceeeccccccCCCCcceeeccCC----CCCCcccceeeeeeecC
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKP----PAKDKCGELLTSLCYHP  242 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~----~~~~~~G~l~l~l~~~~  242 (475)
                      + +++||.+.+++.++.  .....|++|..    ..+...|+|.+.+.+.+
T Consensus        76 ~-d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 C-DEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             C-CCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence            4 899999999998764  33456777743    34567788888876653

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>KOG1028|consensus

Probab=99.72  E-value=1.5e-17  Score=166.39  Aligned_cols=120  Identities=37%  Similarity=0.589  Sum_probs=105.6

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |+|.+++.|.+..+.|.|.|++|++|+.++..+.+||||++++..++..  +.||.++++++||+|||+|.|. ++.+.+
T Consensus       285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l  363 (421)
T KOG1028|consen  285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQL  363 (421)
T ss_pred             ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHh
Confidence            8999999999999999999999999999999999999999999876633  5689999999999999999997 898899


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      ....|.|+|||+|.++++++||.+.+....  .+....+|..+..
T Consensus       364 ~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~  406 (421)
T KOG1028|consen  364 AEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLN  406 (421)
T ss_pred             heeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHh
Confidence            888999999999999999999988777655  3334567776644

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.72  E-value=5.9e-17  Score=133.89  Aligned_cols=101  Identities=19%  Similarity=0.268  Sum_probs=80.7

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccC-CCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC-NLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      |.|.|+|++|++++..+ .|++||||++.+  ++   .+++|+++.+ +.||+|||+|.|.+....   ..|.|+|||++
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l--g~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~d   72 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV--GH---AVYETPTAYNGAKNPRWNKTIQCTLPEGV---DSIYIEIFDER   72 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEE--CC---EEEEeEEccCCCCCCccCeEEEEEecCCC---cEEEEEEEeCC
Confidence            68999999999998877 789999999988  22   3458998875 799999999999987432   46999999999


Q ss_pred             CCCCCeeeEEEEEcCcC-CCCCcccccccccc
Q psy15955        324 NIGRNELIGRILLAGKN-GSGASETKHWQDMI  354 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~-~~~~~~~~~w~~~~  354 (475)
                      .+++|++||.+.+++.. ...+...+.|..+.
T Consensus        73 ~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~  104 (121)
T cd04016          73 AFTMDERIAWTHITIPESVFNGETLDDWYSLS  104 (121)
T ss_pred             CCcCCceEEEEEEECchhccCCCCccccEeCc
Confidence            99999999999998853 43443444555443

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.71  E-value=4.5e-17  Score=133.81  Aligned_cols=104  Identities=27%  Similarity=0.376  Sum_probs=86.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeec-ccccccccceEEEEEEeeC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG-FPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~-~~~~~~~~~~L~~~V~d~d  193 (475)
                      ...|.|+|++|++|+    .+.+||||+|++.   .++++|++++++.||.|||+|.|.. .+..++....|.|+|||++
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~   75 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR   75 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence            446999999999998    5789999999994   4567999999999999999999983 2223344578999999999


Q ss_pred             CCCCCccccceeeccccccCCCC---cceeeccCC
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEK---PTFWKALKP  225 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~---~~~~~~L~~  225 (475)
                      .++++++||++.++|+++..+..   ...|++|..
T Consensus        76 ~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          76 SLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            98889999999999999976644   357999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.71  E-value=6e-17  Score=137.80  Aligned_cols=109  Identities=33%  Similarity=0.543  Sum_probs=92.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCCceEEeeeecCCCCceeeeeEEeecccc------------cccccce
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLP-DKKHRLETKIKRRTLNPRWNETLYFEGFPI------------QKLQSRV  184 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~------------~~~~~~~  184 (475)
                      |.|.|++|++|+.. ..+.+||||+|++.. .....++|+++.++.||.|||+|.|.....            .++....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57899999999988 788999999999963 224578999999999999999999983221            1335678


Q ss_pred             EEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        185 LHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       185 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      |.|+|||++..+++++||++.++|.++........|++|.+..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            9999999999888999999999999998777788999998865

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.71  E-value=4.3e-17  Score=133.57  Aligned_cols=91  Identities=31%  Similarity=0.478  Sum_probs=79.7

Q ss_pred             EEEEEEeeccCccccc-CCCccceEEEEEEeCceeeeeeecccccCCCCCee-cceEEEeecccccccceEEEEEEeccC
Q psy15955        247 LTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVF-NESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      |.|+|++|++|+.++. .+.+||||++++.  +   .+++|++++++.||.| ||+|.|.++..++.+..|.|+|||++.
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~--~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~   75 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG--S---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT   75 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC--C---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence            5799999999999884 7889999999873  2   5678999999999999 999999998777766789999999999


Q ss_pred             CCCCeeeEEEEEcCcCCC
Q psy15955        325 IGRNELIGRILLAGKNGS  342 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~  342 (475)
                      ++++++||++.+++.+..
T Consensus        76 ~~~~~~iG~~~~~l~~l~   93 (110)
T cd08688          76 YSANDAIGKVYIDLNPLL   93 (110)
T ss_pred             CCCCCceEEEEEeHHHhc
Confidence            999999999999875443

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.70  E-value=5.5e-17  Score=139.47  Aligned_cols=102  Identities=41%  Similarity=0.624  Sum_probs=86.8

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--------------------------CceEEeeeecCCCCceee
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--------------------------KHRLETKIKRRTLNPRWN  167 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--------------------------~~~~kT~v~~~~~nP~w~  167 (475)
                      ....|.|+|++|++|+..|..|.+||||+|.+.+..                          ...++|+++.+++||+||
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn  105 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN  105 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence            455799999999999999999999999999986432                          124789999999999999


Q ss_pred             eeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955        168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL  223 (475)
Q Consensus       168 e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L  223 (475)
                      |+|.|.   +..+....|.|+|||++    +++||++.++++++. +.....||+|
T Consensus       106 E~F~f~---v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L  153 (153)
T cd08676         106 ETFRFE---VEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             cEEEEE---eccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence            999998   34445678999999998    789999999999998 4456899986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.70  E-value=5.5e-17  Score=139.28  Aligned_cols=94  Identities=31%  Similarity=0.614  Sum_probs=79.4

Q ss_pred             EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccccccc
Q psy15955        117 TLILRVISAKELPAKDMSG--------------TSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQS  182 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~--------------~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~  182 (475)
                      .|.|+|++|++|+.+|..+              .+||||+|.+.   .++.||+++++++||+|||+|.|. +..... .
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~-~   75 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL-C   75 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEE-eeCCCc-C
Confidence            3789999999999988543              68999999983   346799999999999999999998 333332 3


Q ss_pred             ceEEEEEEeeCCCCCCccccceeeccccccCCC
Q psy15955        183 RVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE  215 (475)
Q Consensus       183 ~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~  215 (475)
                      ..|.|+|||+|..++|++||.+.+++.++...+
T Consensus        76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            589999999999989999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.70  E-value=9.5e-17  Score=133.54  Aligned_cols=101  Identities=25%  Similarity=0.314  Sum_probs=82.1

Q ss_pred             eEEEEEEeecc---CcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        246 VLTITLLKARN---LKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       246 ~L~v~v~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      .|.|+|++|+|   |+.++..|++||||.+.+  ++   .+.+|++++++.||+|||+|.|.+....   ..|.|+|||+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~--g~---~~~rTk~~~~~~nP~WnE~f~f~v~~~~---~~l~v~V~d~   72 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY--GP---KWVRTRTVEDSSNPRWNEQYTWPVYDPC---TVLTVGVFDN   72 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEE--CC---EEeEcCcccCCCCCcceeEEEEEecCCC---CEEEEEEEEC
Confidence            37899999999   899999999999999976  22   3458999999999999999999986322   3799999999


Q ss_pred             cCCC------CCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955        323 DNIG------RNELIGRILLAGKNGSGASETKHWQDMI  354 (475)
Q Consensus       323 ~~~~------~d~~lG~~~i~l~~~~~~~~~~~w~~~~  354 (475)
                      +..+      +|++||++.+++.....+....+|..+.
T Consensus        73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~  110 (126)
T cd08379          73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL  110 (126)
T ss_pred             CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence            9873      8999999999886665544445555544

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.70  E-value=5.2e-16  Score=163.65  Aligned_cols=220  Identities=31%  Similarity=0.462  Sum_probs=166.5

Q ss_pred             EeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEE
Q psy15955        111 YDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVF  190 (475)
Q Consensus       111 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~  190 (475)
                      |+...+.++|.|..|.+|......+++|||++|.+.  +..++||-....++||+|++.....   +-. ..+.|.+++.
T Consensus       706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~---v~s-k~~r~~l~~~  779 (1227)
T COG5038         706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN--NLVKYRTIYGSSTLNPIWNEILYVP---VTS-KNQRLTLECM  779 (1227)
T ss_pred             ecCccceEEEEeehhhcccccccCcccccceEEEec--ceeEEEEecccCccccceeeeEEEE---ecC-CccEEeeeee
Confidence            445678999999999999988888999999999984  4567899999999999999987654   333 2346888888


Q ss_pred             eeCCCCCCccccceeeccccccCCCCcc----------eeeccCCCCCCcc-----------------------------
Q psy15955        191 DYDRFSRDDSIGEVFLPLCQVDLSEKPT----------FWKALKPPAKDKC-----------------------------  231 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i~l~~l~~~~~~~----------~~~~L~~~~~~~~-----------------------------  231 (475)
                      |+...+.|..+|++.+++.++.......          ..-.|........                             
T Consensus       780 ~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~  859 (1227)
T COG5038         780 DYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSS  859 (1227)
T ss_pred             cchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhh
Confidence            9998999999999999988875311000          0000000000000                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy15955        232 --------------------------------------------------------------------------------  231 (475)
Q Consensus       232 --------------------------------------------------------------------------------  231 (475)
                                                                                                      
T Consensus       860 e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd  939 (1227)
T COG5038         860 EKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDD  939 (1227)
T ss_pred             HHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecC
Confidence                                                                                            


Q ss_pred             -------------------------------------------------------------------------c--ceee
Q psy15955        232 -------------------------------------------------------------------------G--ELLT  236 (475)
Q Consensus       232 -------------------------------------------------------------------------G--~l~l  236 (475)
                                                                                               |  ++.+
T Consensus       940 ~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v 1019 (1227)
T COG5038         940 ASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLV 1019 (1227)
T ss_pred             CCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEE
Confidence                                                                                     1  1222


Q ss_pred             eeeecCC------------ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe
Q psy15955        237 SLCYHPS------------NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN  304 (475)
Q Consensus       237 ~l~~~~~------------~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~  304 (475)
                      ++.|.|.            .|.|.|.+..|.||+..+.+|.+||||++.+.    ....++|+++++++||.|||+|..+
T Consensus      1020 ~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln----~k~vyktkv~KktlNPvwNEe~~i~ 1095 (1227)
T COG5038        1020 QVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN----EKSVYKTKVVKKTLNPVWNEEFTIE 1095 (1227)
T ss_pred             EEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEec----ceecccccchhccCCCCccccceEe
Confidence            2223221            57799999999999999999999999999874    2237899999999999999999998


Q ss_pred             ecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       305 v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |.....  ..+.+.|+|||...+++.||.+.++|....
T Consensus      1096 v~~r~~--D~~~i~v~Dwd~~~knd~lg~~~idL~~l~ 1131 (1227)
T COG5038        1096 VLNRVK--DVLTINVNDWDSGEKNDLLGTAEIDLSKLE 1131 (1227)
T ss_pred             eecccc--ceEEEEEeecccCCCccccccccccHhhcC
Confidence            875443  469999999999999999999999886544

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.70  E-value=8.7e-17  Score=134.93  Aligned_cols=107  Identities=32%  Similarity=0.429  Sum_probs=91.6

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecC-CCCceeeeeEEeeccccccc-ccceEEEEEEeeC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRR-TLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYD  193 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d  193 (475)
                      |.|.|+|++|++|+..+..+.+||||+|.+   +....+|+++.+ +.||+|||+|.|. ++.... ....|.|+|||.+
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~   76 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC---RTQERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKD   76 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEE---CCEeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECc
Confidence            469999999999999998899999999998   345678888874 8999999999998 433211 2468999999999


Q ss_pred             CCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      ..+++++||++.+++.++..++....|+.|.+.
T Consensus        77 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          77 NFSDDDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             cCCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            988899999999999999888888999999875

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.69  E-value=1.8e-16  Score=132.19  Aligned_cols=102  Identities=26%  Similarity=0.352  Sum_probs=87.2

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC--
Q psy15955        121 RVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR--  194 (475)
Q Consensus       121 ~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~--  194 (475)
                      ..++|++|+..+..+.+||||+|++.+..    ...++|+++++++||+|||+|.|. +...  ....|.|+|||+|.  
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~--~~~~l~~~V~d~d~~~   81 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFE--EVQKLRFEVYDVDSKS   81 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeE--eeeEEEEEEEEecCCc
Confidence            45899999999999999999999997543    124799999999999999999997 3333  34579999999997  


Q ss_pred             --CCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        195 --FSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       195 --~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                        .+++++||++.+++.++..+.....|+.|.+
T Consensus        82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          82 KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence              7899999999999999998888889999954

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.69  E-value=6.6e-16  Score=162.87  Aligned_cols=217  Identities=27%  Similarity=0.458  Sum_probs=163.2

Q ss_pred             CCCEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEe
Q psy15955        114 DNSTLILRVISAKELPAKD--MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFD  191 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d  191 (475)
                      .-|.|.|+|.+|++|...+  ..+..|||+.+...  +....||+++++++||+|||+|...   +..+ ...|.++|||
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~---lns~-~d~L~LslyD  507 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFS--DRVIGKTRVKKNTLNPVWNETFYIL---LNSF-TDPLNLSLYD  507 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEec--cccCCccceeeccCCccccceEEEE---eccc-CCceeEEEEe
Confidence            4578999999999999988  67899999999973  4445699999999999999999865   4443 4679999999


Q ss_pred             eCCCCCCccccceeeccccccCCCCc--------------------ceeeccCCCCC-----------Ccccceeeee--
Q psy15955        192 YDRFSRDDSIGEVFLPLCQVDLSEKP--------------------TFWKALKPPAK-----------DKCGELLTSL--  238 (475)
Q Consensus       192 ~d~~~~~~~iG~~~i~l~~l~~~~~~--------------------~~~~~L~~~~~-----------~~~G~l~l~l--  238 (475)
                      .+...+|+.+|.+.++|..|......                    ..|++....+.           ...|-+.+.+  
T Consensus       508 ~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~  587 (1227)
T COG5038         508 FNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLRE  587 (1227)
T ss_pred             ccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeec
Confidence            98889999999999999887533321                    12333221110           0112222222  


Q ss_pred             --------------------------------------------------------------------------------
Q psy15955        239 --------------------------------------------------------------------------------  238 (475)
Q Consensus       239 --------------------------------------------------------------------------------  238 (475)
                                                                                                      
T Consensus       588 ~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~  667 (1227)
T COG5038         588 VKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLID  667 (1227)
T ss_pred             cccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhh
Confidence                                                                                            


Q ss_pred             ----------------------eec---------------CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceee
Q psy15955        239 ----------------------CYH---------------PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI  281 (475)
Q Consensus       239 ----------------------~~~---------------~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~  281 (475)
                                            .|.               ...+.++|.|..|.+|......+++|||.++.+.    ..
T Consensus       668 ~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~  743 (1227)
T COG5038         668 RTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NL  743 (1227)
T ss_pred             ccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec----ce
Confidence                                  111               1245789999999999988889999999999663    34


Q ss_pred             eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      .++||-....+.||.|++..-.++...   ...|.+.++|+...++|..||++.+...+...
T Consensus       744 ~k~rti~~~~~~npiw~~i~Yv~v~sk---~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~  802 (1227)
T COG5038         744 VKYRTIYGSSTLNPIWNEILYVPVTSK---NQRLTLECMDYEESGDDRNLGEVNINVSNVSK  802 (1227)
T ss_pred             eEEEEecccCccccceeeeEEEEecCC---ccEEeeeeecchhccccceeceeeeeeeeeee
Confidence            678898888999999999765555422   22488889999999999999999998866554

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.69  E-value=3.2e-16  Score=132.47  Aligned_cols=116  Identities=27%  Similarity=0.384  Sum_probs=91.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC----------ceEEeeeecCCCCcee-eeeEEeecccccccccceE
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKK----------HRLETKIKRRTLNPRW-NETLYFEGFPIQKLQSRVL  185 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~----------~~~kT~v~~~~~nP~w-~e~f~f~~~~~~~~~~~~L  185 (475)
                      .+.|.+++|++|+ .+.+|++||||++++.+.+.          +.++|+++++++||+| ||+|.|. +.    ....|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~----~~~~L   75 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GL----PTDVL   75 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cC----CCCEE
Confidence            3678999999998 67789999999999976553          3689999999999999 9999998 32    24589


Q ss_pred             EEEEEeeCCCCC---CccccceeeccccccCCC---CcceeeccCCCC--CCcccceeeee
Q psy15955        186 HLHVFDYDRFSR---DDSIGEVFLPLCQVDLSE---KPTFWKALKPPA--KDKCGELLTSL  238 (475)
Q Consensus       186 ~~~V~d~d~~~~---~~~iG~~~i~l~~l~~~~---~~~~~~~L~~~~--~~~~G~l~l~l  238 (475)
                      .|+|||++..++   +++||++.+++.++..+.   ....|++|....  ....|+|.+.+
T Consensus        76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            999999875443   699999999999996553   245789887543  23457666554

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.69  E-value=1.2e-16  Score=131.13  Aligned_cols=96  Identities=28%  Similarity=0.391  Sum_probs=81.8

Q ss_pred             eeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc-ccceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI-RECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l-~~~~l~i~V~d~  322 (475)
                      |.|.|+|++|++|+..+.. +.+||||+|++...++  ..++|++++++.||.|||+|.|.+...++ ....|.|+|||+
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~   78 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGK--PLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS   78 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCC--ccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence            5799999999999999987 8999999998864432  35799999999999999999998866544 245799999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~  342 (475)
                      +..+++++||++.+++.+..
T Consensus        79 d~~~~dd~lG~~~i~l~~l~   98 (111)
T cd04041          79 DRFTADDRLGRVEIDLKELI   98 (111)
T ss_pred             CCCCCCCcceEEEEEHHHHh
Confidence            99999999999999875443

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.68  E-value=1.7e-16  Score=132.20  Aligned_cols=92  Identities=28%  Similarity=0.319  Sum_probs=78.5

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      .++|.|+|++|++|+. +..+.+||||+|++.   ++++||++++++.||+|||+|.|.....  .....|+|+|||+|.
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~--~~~~~L~v~V~D~d~  100 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVEL--SPGGKLRFEVWDRDN  100 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccC--CCCCEEEEEEEeCCC
Confidence            4579999999999984 667889999999983   3478999999999999999999962222  235689999999999


Q ss_pred             CCCCccccceeecccccc
Q psy15955        195 FSRDDSIGEVFLPLCQVD  212 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~  212 (475)
                      .+++++||++.++|....
T Consensus       101 ~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         101 GWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCeeEEEEEEecCCc
Confidence            999999999999998765

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.68  E-value=3.3e-16  Score=130.22  Aligned_cols=105  Identities=26%  Similarity=0.366  Sum_probs=90.1

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      |.|.|+|++|++|+..+..+.+||||+|++.  +....+|+++.++.||.|||.|.|. +  ... ...|.|+|||++..
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~-v--~~~-~~~L~v~v~d~~~~   74 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVP-V--TSP-NQKITLEVMDYEKV   74 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEE-e--cCC-CCEEEEEEEECCCC
Confidence            4689999999999999988999999999983  3356799999999999999999887 2  222 36899999999999


Q ss_pred             CCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      +++++||++.+++.++..+ ....||.|...+
T Consensus        75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~  105 (120)
T cd04045          75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE  105 (120)
T ss_pred             CCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence            9999999999999999766 558898887654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.68  E-value=4.1e-16  Score=129.49  Aligned_cols=114  Identities=33%  Similarity=0.501  Sum_probs=89.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|+..   +.+||||+|++.  +...++|+++++ .||+|||+|.|. ++..++....|.|.|||.+...+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~   74 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDR   74 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCC
Confidence            78999999999976   789999999993  334579999988 999999999998 55544445678889999886655


Q ss_pred             CccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeee
Q psy15955        198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCY  240 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~  240 (475)
                      +.++|.  ++|..+..+.....|++|.+..  ....|+|++.+.|
T Consensus        75 ~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          75 DIVIGK--VALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             eeEEEE--EEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            666665  5555566677778999998754  3568999998875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.68  E-value=4.2e-16  Score=129.21  Aligned_cols=91  Identities=35%  Similarity=0.463  Sum_probs=78.2

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .++|.|++|++|+..+..+.+||||++++.  +   .+++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~--~---~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~   73 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG--N---EKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG   73 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC--C---EeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC
Confidence            378999999999999988999999999872  2   356899999999999999999998643  245799999999999


Q ss_pred             CCCeeeEEEEEcCcCCCC
Q psy15955        326 GRNELIGRILLAGKNGSG  343 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~~~~  343 (475)
                      +++++||++.+++.+...
T Consensus        74 ~~~~~iG~~~~~l~~l~~   91 (116)
T cd08376          74 KKDEFIGRCEIDLSALPR   91 (116)
T ss_pred             CCCCeEEEEEEeHHHCCC
Confidence            999999999998765443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.68  E-value=2.9e-16  Score=131.48  Aligned_cols=119  Identities=29%  Similarity=0.384  Sum_probs=90.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |+|.|++|++|++.+..+.+||||+|++.+. ....||+++++++||+|||+|.|.   ........|.|+|||+|..++
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~---~~~~~~~~L~~~V~d~d~~~~   77 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELE---ATLPGNSILKISVMDYDLLGS   77 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEE---ecCCCCCEEEEEEEECCCCCC
Confidence            7899999999999999999999999998432 223578889999999999999997   333345789999999999989


Q ss_pred             CccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        198 DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      +++||++.++|++... ..+..+..+. +.....|.++..-.+.|
T Consensus        78 dd~iG~~~i~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          78 DDLIGETVIDLEDRFF-SKHRATCGLP-PTYEESGPNQWRDSLKP  120 (124)
T ss_pred             CceeEEEEEeeccccc-chHHHhccCC-CcccccCceecCcccCc
Confidence            9999999999998865 2222333332 22335566666655544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.67  E-value=4.1e-16  Score=130.65  Aligned_cols=102  Identities=29%  Similarity=0.552  Sum_probs=83.4

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      +|.|+|++|++|+..+..+.+||||++++.  +   .+++|++++++.||.|||+|.|.+....  ...|.|+|||++..
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~--~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~   73 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN--G---QTLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV   73 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC--C---EEEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC
Confidence            589999999999999988899999999862  2   3468999999999999999999986533  45799999999999


Q ss_pred             CCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955        326 GRNELIGRILLAGKNGSGASETKHWQDMI  354 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~~  354 (475)
                      +++++||++.+++.+.........|.++.
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~  102 (123)
T cd04025          74 SKNDFLGKVVFSIQTLQQAKQEEGWFRLL  102 (123)
T ss_pred             CCCcEeEEEEEEHHHcccCCCCCCEEECC
Confidence            99999999999987655433344455443

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.67  E-value=3.2e-16  Score=132.02  Aligned_cols=92  Identities=30%  Similarity=0.501  Sum_probs=78.1

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc-cccccceEEEEEEeccC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW-EKIRECSLNVMVMDFDN  324 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-~~l~~~~l~i~V~d~~~  324 (475)
                      .|.|+|++|++|+..+..+.+||||++++.  +   .+++|++++++.||.|||.|.|.+.. ..+....|.|+|||++.
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~--~---~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~   75 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD--G---QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR   75 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC--C---EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence            488999999999999988999999999873  2   35689999999999999999999863 33345679999999998


Q ss_pred             CC-CCeeeEEEEEcCcCCC
Q psy15955        325 IG-RNELIGRILLAGKNGS  342 (475)
Q Consensus       325 ~~-~d~~lG~~~i~l~~~~  342 (475)
                      ++ ++++||++.+++.+..
T Consensus        76 ~~~~d~~lG~v~i~l~~l~   94 (127)
T cd04022          76 SGRRRSFLGRVRISGTSFV   94 (127)
T ss_pred             CcCCCCeeeEEEEcHHHcC
Confidence            86 8999999999886544

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG1265|consensus

Probab=99.66  E-value=6.5e-17  Score=164.58  Aligned_cols=183  Identities=20%  Similarity=0.288  Sum_probs=136.7

Q ss_pred             HHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeeeEeC
Q psy15955         18 FLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDMYID   94 (475)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~~~~   94 (475)
                      ...+.+.||||+|+|+|||||-|..=|.+.|...+.+=...   ++...++|..||+|||++|||||+++..++     +
T Consensus       616 yNK~QlSRIYPKgtRvdSSNymPqifWnaGcQmVsLNfQT~dlaMQlN~g~FEyNG~sGYllKPdfmRrpDr~f-----d  690 (1189)
T KOG1265|consen  616 YNKRQLSRIYPKGTRVDSSNYMPQIFWNAGCQMVSLNFQTPDLAMQLNMGMFEYNGGSGYLLKPDFMRRPDRQF-----D  690 (1189)
T ss_pred             hhhHhhhccccCcccccccccchHHHHhccceEEEeeccCccHHHHhhhhheeecCCccceeChHHhhCCCcCc-----C
Confidence            45677899999999999999998766555554444443332   344558899999999999999999998776     5


Q ss_pred             CCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEe--CCCC--ceEEeee-ecCCCCceeeee
Q psy15955         95 NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALL--PDKK--HRLETKI-KRRTLNPRWNET  169 (475)
Q Consensus        95 ~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~--~~~~--~~~kT~v-~~~~~nP~w~e~  169 (475)
                      |+......|.|         ..++.|+||++.-|..++.+    .||.|.+.  |.+.  ..+||++ ..|++||+|+|+
T Consensus       691 PFse~~VdgvI---------A~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~ee  757 (1189)
T KOG1265|consen  691 PFSESPVDGVI---------AATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEE  757 (1189)
T ss_pred             CcccCcccceE---------EeeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccC
Confidence            66666666764         45789999999999887744    99999984  3332  2467885 557999999976


Q ss_pred             -EEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        170 -LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       170 -f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                       |.|.-|-..++  ..|+|.||+.+    ..+||+-.+|+..|..|-   ....|....
T Consensus       758 pfvF~KVvLpeL--A~lRiavyeEg----gK~ig~RIlpvd~l~~GY---rhv~LRse~  807 (1189)
T KOG1265|consen  758 PFVFRKVVLPEL--ASLRIAVYEEG----GKFIGQRILPVDGLNAGY---RHVCLRSES  807 (1189)
T ss_pred             Ccccceecccch--hheeeeeeccC----CceeeeeccchhcccCcc---eeEEecCCC
Confidence             88875444444  58999999876    369999999999987543   344454433

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.66  E-value=6.3e-16  Score=128.68  Aligned_cols=93  Identities=31%  Similarity=0.540  Sum_probs=78.2

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      |.|+|++|++|+..+..+.+||||++++...+  ..+++|++++++.||.|||+|.|.+....  ...|.|+|||++.. 
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~-   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV-   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC-
Confidence            78999999999999888999999999874322  24679999999999999999999987542  34699999999998 


Q ss_pred             CCeeeEEEEEcCcCCCCC
Q psy15955        327 RNELIGRILLAGKNGSGA  344 (475)
Q Consensus       327 ~d~~lG~~~i~l~~~~~~  344 (475)
                      ++++||++.+++.+...+
T Consensus        77 ~~~~iG~~~~~l~~l~~g   94 (119)
T cd04036          77 MDDHLGTVLFDVSKLKLG   94 (119)
T ss_pred             CCcccEEEEEEHHHCCCC
Confidence            899999999988655443

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.66  E-value=5.5e-16  Score=128.88  Aligned_cols=102  Identities=27%  Similarity=0.367  Sum_probs=82.2

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      |.|.|+|++|++|+..+..+.+||||++++..     .+++|+++. ++.||.|||.|.|.++...  ...|.|+|||++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~   73 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFEITEDK--KPILKVAVFDDD   73 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEEecCCC--CCEEEEEEEeCC
Confidence            57999999999999999999999999998732     346788775 4799999999999997542  357999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955        324 NIGRNELIGRILLAGKNGSGASETKHWQDMI  354 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~  354 (475)
                      ..+ +++||++.+++.+...+.....|.++.
T Consensus        74 ~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~  103 (118)
T cd08681          74 KRK-PDLIGDTEVDLSPALKEGEFDDWYELT  103 (118)
T ss_pred             CCC-CcceEEEEEecHHHhhcCCCCCcEEec
Confidence            876 899999999887655444445555543

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.66  E-value=5.1e-16  Score=132.72  Aligned_cols=93  Identities=37%  Similarity=0.625  Sum_probs=82.0

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      |.|.|+|++|++|+..+. +.+||||+|.+   +.+..+|++++++.||+|||+|.|. +  .+. ...|.|+|||++.+
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~---g~~~~kT~vvk~t~nP~WnE~f~f~-i--~~~-~~~l~~~V~D~d~~   73 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL---GNQKVKTRVIKKNLNPVWNEELTLS-V--PNP-MAPLKLEVFDKDTF   73 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEE---CCEEEEeeeEcCCCCCeecccEEEE-e--cCC-CCEEEEEEEECCCC
Confidence            569999999999999887 88999999998   4567899999999999999999998 3  333 56899999999999


Q ss_pred             CCCccccceeeccccccCCCC
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEK  216 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~  216 (475)
                      ++|++||++.+++.++.....
T Consensus        74 ~~dd~iG~a~i~l~~l~~~~~   94 (145)
T cd04038          74 SKDDSMGEAEIDLEPLVEAAK   94 (145)
T ss_pred             CCCCEEEEEEEEHHHhhhhhh
Confidence            999999999999999875544

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.66  E-value=5.7e-16  Score=125.98  Aligned_cols=91  Identities=23%  Similarity=0.295  Sum_probs=76.2

Q ss_pred             eeEEEEEEeeccCcccccC----CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955        245 SVLTITLLKARNLKAKDIN----GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      |.|.|+|++|++|+..+..    +.+||||++++  ++   .++||++++++.||+|||.|.|.+...+. ...|.|+||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~--~~---~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~   74 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF--GR---RVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVL   74 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE--CC---EeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEE
Confidence            5799999999999987632    35899999987  22   35689999999999999999999865443 457999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~  341 (475)
                      |++..++|++||++.+++.++
T Consensus        75 D~d~~~~dd~IG~~~l~L~~l   95 (108)
T cd04039          75 DKDKFSFNDYVATGSLSVQEL   95 (108)
T ss_pred             ECCCCCCCcceEEEEEEHHHH
Confidence            999999999999999987543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.65  E-value=8e-16  Score=128.46  Aligned_cols=101  Identities=29%  Similarity=0.386  Sum_probs=82.8

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .|.|+|++|++|+..+..+.+||||++++.  +  ...++|++++++.||.|||+|.|.+..  + ...|.|+|||++..
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~--~~~~kT~~~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~~   73 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG--G--KTVYKSKTIYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDRG   73 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC--C--EEEEEeeeccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCCC
Confidence            378999999999999999999999999763  2  245789999999999999999999853  2 34799999999999


Q ss_pred             CCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        326 GRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      +++++||++.+++.+...+...+.|.++
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L  101 (121)
T cd04042          74 LTDDFMGSAFVDLSTLELNKPTEVKLKL  101 (121)
T ss_pred             CCCcceEEEEEEHHHcCCCCCeEEEEEC
Confidence            9999999999988665544444444444

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.65  E-value=1.4e-15  Score=130.54  Aligned_cols=133  Identities=18%  Similarity=0.262  Sum_probs=97.2

Q ss_pred             EEEEEEeecc--CcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc------ccccceEEEE
Q psy15955        247 LTITLLKARN--LKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE------KIRECSLNVM  318 (475)
Q Consensus       247 L~v~v~~a~~--L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~------~l~~~~l~i~  318 (475)
                      ..++|..|++  |+..+..+.+||||++++...+....+.+|+++++|+||+|||+|.|.|...      .+....|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4455666666  7777778889999999985444455688999999999999999999999654      3456679999


Q ss_pred             EEeccCC-CCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCc
Q psy15955        319 VMDFDNI-GRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGA  397 (475)
Q Consensus       319 V~d~~~~-~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~  397 (475)
                      |||.+.+ .+|++||++.++|.......+...|.+++.. ++                  ...|-.++.+..+.|-+.-+
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-~k------------------~~Gg~l~v~ir~r~p~~~~~  144 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-RK------------------ATGGKLEVKVRLREPLTGKQ  144 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-CC------------------CcCCEEEEEEEecCCCccce
Confidence            9999986 5799999999998766544444445554321 11                  23566667777777766544


Q ss_pred             h
Q psy15955        398 A  398 (475)
Q Consensus       398 ~  398 (475)
                      +
T Consensus       145 ~  145 (155)
T cd08690         145 L  145 (155)
T ss_pred             e
Confidence            4

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.65  E-value=1e-15  Score=129.94  Aligned_cols=117  Identities=24%  Similarity=0.395  Sum_probs=94.3

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      ...|.|.|++|++|+.++     +|||.|.+  ++....||+++.++.||.|+|+|.|...+    ....|.|.||+.+.
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~~~----~~~~l~v~v~k~~~   78 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSNLP----PVSVITVNLYRESD   78 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecCCC----cccEEEEEEEEccC
Confidence            457999999999999865     79999999  34445699999999999999999997322    13569999986553


Q ss_pred             CC----CCccccceeeccccccCCCCcceeeccCCCCCCc----------ccceeeeeeecC
Q psy15955        195 FS----RDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK----------CGELLTSLCYHP  242 (475)
Q Consensus       195 ~~----~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~----------~G~l~l~l~~~~  242 (475)
                      ..    ++++||.+.||++++..+...+.||+|.+..+..          .+.|++++.|.+
T Consensus        79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013          79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence            22    5789999999999999888889999998766543          367888888764

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN03008 Phospholipase D delta

Probab=99.64  E-value=1.8e-15  Score=157.44  Aligned_cols=125  Identities=24%  Similarity=0.416  Sum_probs=104.3

Q ss_pred             CCCCEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEEeCCCC
Q psy15955        113 FDNSTLILRVISAKELPAKDM------------------------------------------SGTSDPYVKVALLPDKK  150 (475)
Q Consensus       113 ~~~~~L~v~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~l~~~~~  150 (475)
                      ..+|.|.++|++|++|+.+|.                                          .+++||||+|.+.  +.
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~   88 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QA   88 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Cc
Confidence            367899999999999986321                                          2467999999993  44


Q ss_pred             ceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC-
Q psy15955        151 HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD-  229 (475)
Q Consensus       151 ~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~-  229 (475)
                      +..||+|+++++||+|||+|.|.   +... ...|.|+|||+|.++ +++||++.|||+++..+.....|++|....++ 
T Consensus        89 rv~RTrVi~n~~NPvWNE~F~f~---vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp  163 (868)
T PLN03008         89 TLARTRVLKNSQEPLWDEKFNIS---IAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKP  163 (868)
T ss_pred             ceeeEEeCCCCCCCCcceeEEEE---ecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence            56799999999999999999998   4443 358999999999997 58999999999999999888999999876653 


Q ss_pred             --cccceeeeeeecCCc
Q psy15955        230 --KCGELLTSLCYHPSN  244 (475)
Q Consensus       230 --~~G~l~l~l~~~~~~  244 (475)
                        ..|+|++++.|.|..
T Consensus       164 ~k~~~kl~v~lqf~pv~  180 (868)
T PLN03008        164 PKAETAIFIDMKFTPFD  180 (868)
T ss_pred             CCCCcEEEEEEEEEEcc
Confidence              458999999998754

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.64  E-value=2e-15  Score=122.68  Aligned_cols=103  Identities=24%  Similarity=0.364  Sum_probs=83.7

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .|.|+|++|++|+..+..+.+||||++++.  +   .+++|++++++.||.|||+|.|.+...+  ...|.|+|||++. 
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~--~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~-   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG--K---TTQKSKVKERTNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT-   72 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEEC--C---EEEeCccccCCCCCcccceEEEEeCCCC--CCEEEEEEEECCC-
Confidence            378999999999999888999999999873  2   4578999999999999999999997533  3479999999885 


Q ss_pred             CCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        326 GRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                        +++||++.+++.            ++...++.....|++|..+
T Consensus        73 --~~~iG~~~i~l~------------~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          73 --GKSLGSLTLPLS------------ELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             --CCccEEEEEEHH------------HhhccccceeeeeEecCCC
Confidence              789999999764            3333445567788888654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1030|consensus

Probab=99.64  E-value=7.7e-16  Score=129.85  Aligned_cols=92  Identities=33%  Similarity=0.494  Sum_probs=79.9

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      -|.|+|.|++|.||...|..+++||||.+.+  ++   .+.+|+++++++||+|||.|.|.+....   ..|+++|||+|
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l--g~---q~lkT~~v~~n~NPeWNe~ltf~v~d~~---~~lkv~VyD~D   76 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL--GN---QKLKTRVVYKNLNPEWNEELTFTVKDPN---TPLKVTVYDKD   76 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEE--CC---eeeeeeeecCCCCCcccceEEEEecCCC---ceEEEEEEeCC
Confidence            4789999999999999998899999999976  22   3458889999999999999999997443   47999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCCC
Q psy15955        324 NIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~~  343 (475)
                      .+++||+||.++|++.....
T Consensus        77 ~fs~dD~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   77 TFSSDDFMGEATIPLKPLLE   96 (168)
T ss_pred             CCCcccccceeeeccHHHHH
Confidence            99999999999998865443

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.64  E-value=1.6e-15  Score=127.15  Aligned_cols=115  Identities=30%  Similarity=0.392  Sum_probs=91.8

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      .+|.|+|++|+ |...+..+.+||||+|++.  +....+|++++++.||+|||+|.|. +.    ....|.|+|||++..
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~-~~----~~~~l~~~V~d~~~~   73 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVL-VT----PQSTLEFKVWSHHTL   73 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEE-eC----CCCEEEEEEEeCCCC
Confidence            47999999998 5555558899999999983  3347899999999999999999998 32    246899999999999


Q ss_pred             CCCccccceeeccccccCCCC-----cceeeccCCCCC---Ccccceeeee
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEK-----PTFWKALKPPAK---DKCGELLTSL  238 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~---~~~G~l~l~l  238 (475)
                      +.+++||++.++|+++.....     ...|+++.....   ...|+|.+.+
T Consensus        74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            899999999999999865433     235888865442   5678887764

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.64  E-value=2.3e-15  Score=129.74  Aligned_cols=108  Identities=24%  Similarity=0.300  Sum_probs=84.7

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccC-CCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC-NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      .|.|+|++|++|+..+..|.+||||++++.  +   .+++|+++.+ +.||+|||+|.|.++..  ....|.|+|||++.
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~--~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~   73 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG--N---QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG   73 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEEC--C---EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence            478999999999999999999999999883  2   3557888766 69999999999998632  23579999999999


Q ss_pred             CCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        325 IGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                      .+++++||++.|++.+....          ..++.....|++|...
T Consensus        74 ~~~dd~lG~v~i~L~~l~~~----------~~~~~~~~~W~~L~~~  109 (150)
T cd04019          74 PNKDEPLGRAVIPLNDIERR----------VDDRPVPSRWFSLERP  109 (150)
T ss_pred             CCCCCeEEEEEEEHHHCccc----------CCCCccCCceEECcCC
Confidence            88899999999988654321          1223445677777644

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.63  E-value=1.4e-15  Score=126.69  Aligned_cols=90  Identities=28%  Similarity=0.435  Sum_probs=75.7

Q ss_pred             EEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        247 LTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       247 L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      |.|.|++|+||+..+ ..|.+||||++++.  +.  .+++|++++++.||.|||+|.|.++..   ...|.|.|||++..
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~   74 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QE--EVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL   74 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--Cc--cEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC
Confidence            678999999999874 46789999999872  22  347899999999999999999999743   24799999999999


Q ss_pred             CCCeeeEEEEEcCcCCCC
Q psy15955        326 GRNELIGRILLAGKNGSG  343 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~~~~  343 (475)
                      +++++||.+.+++.+...
T Consensus        75 ~~~~~iG~~~i~l~~l~~   92 (121)
T cd08401          75 RRDSVIGKVAIKKEDLHK   92 (121)
T ss_pred             CCCceEEEEEEEHHHccC
Confidence            999999999998765543

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.63  E-value=9.8e-16  Score=125.69  Aligned_cols=101  Identities=24%  Similarity=0.357  Sum_probs=84.4

Q ss_pred             CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeecccccc
Q psy15955        133 MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD  212 (475)
Q Consensus       133 ~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~  212 (475)
                      ..|.+||||+|++.  +...++|++++++.||+|||.|.|.   +.+.....|.|+|||++.. ++++||.+.++|+++.
T Consensus         9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~---v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~   82 (111)
T cd04052           9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFL---VTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLI   82 (111)
T ss_pred             cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEE---ecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHH
Confidence            56889999999993  3345799999999999999999997   3344457899999999988 8999999999999985


Q ss_pred             C-CCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        213 L-SEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       213 ~-~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      . ......|++|..   ...|+|++++.|.|
T Consensus        83 ~~~~~~~~w~~L~~---~~~G~i~~~~~~~p  110 (111)
T cd04052          83 DATSVGQQWFPLSG---NGQGRIRISALWKP  110 (111)
T ss_pred             hhhhccceeEECCC---CCCCEEEEEEEEec
Confidence            4 344578999975   46799999999976

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.63  E-value=4.1e-15  Score=125.55  Aligned_cols=117  Identities=27%  Similarity=0.408  Sum_probs=94.3

Q ss_pred             EEEEEEEEeecCCCCC--CCCCCCcEEEEEEeCCC---CceEEeeeecCCC-CceeeeeEEeecccccccccceEEEEEE
Q psy15955        117 TLILRVISAKELPAKD--MSGTSDPYVKVALLPDK---KHRLETKIKRRTL-NPRWNETLYFEGFPIQKLQSRVLHLHVF  190 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~---~~~~kT~v~~~~~-nP~w~e~f~f~~~~~~~~~~~~L~~~V~  190 (475)
                      .|.|+|++|++|+..+  ..+.+||||++++.+.+   ..+++|+++.++. ||.|||+|.|. +.  ......|.|+||
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~--~~~~~~l~~~V~   79 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VT--VPELAFLRFVVY   79 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-Ee--CCCeEEEEEEEE
Confidence            6899999999999888  57889999999996443   3568999988765 99999999998 33  333457999999


Q ss_pred             eeCCCCCCccccceeeccccccCCCCcceeeccCCCCC--Ccccceeeeeee
Q psy15955        191 DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK--DKCGELLTSLCY  240 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~G~l~l~l~~  240 (475)
                      |.+.. ++++||++.++++++..+   ..|++|....+  ...|.|.+.+..
T Consensus        80 d~~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          80 DEDSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             eCCCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            99987 889999999999999543   46888877655  456788777654

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.63  E-value=4e-15  Score=126.36  Aligned_cols=96  Identities=28%  Similarity=0.416  Sum_probs=82.3

Q ss_pred             ecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955        240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV  319 (475)
Q Consensus       240 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V  319 (475)
                      +.+..+.|.|+|++|++|+..+..|.+||||++++.     ..+++|++++++.||.|||+|.|.+..  +....|.|+|
T Consensus        10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V   82 (136)
T cd08375          10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITV   82 (136)
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEE
Confidence            345678999999999999999999999999999872     235799999999999999999999863  3345799999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCC
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      ||++..++|++||++.+++.+..
T Consensus        83 ~D~d~~~~d~~lG~~~i~l~~l~  105 (136)
T cd08375          83 FDRDFFSPDDFLGRTEIRVADIL  105 (136)
T ss_pred             EECCCCCCCCeeEEEEEEHHHhc
Confidence            99999999999999999885543

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.62  E-value=1.9e-15  Score=129.87  Aligned_cols=107  Identities=29%  Similarity=0.462  Sum_probs=85.4

Q ss_pred             eecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCcee------------------------eeeeecccccCCCC
Q psy15955        239 CYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKR------------------------IEKRKTQIFKCNLN  294 (475)
Q Consensus       239 ~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~------------------------~~~~~T~~~~~t~n  294 (475)
                      ...|..+.|.|+|++|++|...|..|.+||||++++.+..+.                        ...++|++++++.|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            456778999999999999999999999999999988543211                        13478999999999


Q ss_pred             CeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955        295 PVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       295 P~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      |.|||+|.|.+..  +....|.|+|||++    +++||++.+++.+..+ ...++|+.
T Consensus       102 P~WnE~F~f~v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~  152 (153)
T cd08676         102 PVWNETFRFEVED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFK  152 (153)
T ss_pred             CccccEEEEEecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEe
Confidence            9999999999853  34568999999987    8999999998866552 23455543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.62  E-value=2.2e-15  Score=129.36  Aligned_cols=92  Identities=25%  Similarity=0.403  Sum_probs=76.4

Q ss_pred             eEEEEEEeeccCcccccCC--------------CccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        246 VLTITLLKARNLKAKDING--------------KSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~--------------~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      .|.|+|++|++|+.++..+              .+||||+|.+.  ++   +.+|++++++.||+|||+|.|.+..... 
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~--g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~-   74 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA--GQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPL-   74 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC--CE---eeecceEcCCCCCCcceEEEEEeeCCCc-
Confidence            3789999999999988543              68999999763  32   3589999999999999999999754443 


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      ...|.|+|||++..++|++||.+.+++.+...
T Consensus        75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~  106 (151)
T cd04018          75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISN  106 (151)
T ss_pred             CCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence            34799999999999999999999999876544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.62  E-value=2.5e-15  Score=130.91  Aligned_cols=106  Identities=27%  Similarity=0.408  Sum_probs=85.5

Q ss_pred             eeEEEEEEeeccCcccc------------------------------cCCCccceEEEEEEeCceeeeeeecccccCCCC
Q psy15955        245 SVLTITLLKARNLKAKD------------------------------INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLN  294 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~n  294 (475)
                      |.|.|+|++|++|+.+|                              ..|++||||+|++.  +.  ...+|++++++.|
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~--~~~rT~v~~~~~n   82 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GA--RVARTRVIENSEN   82 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--Ce--EeeEEEEeCCCCC
Confidence            68999999999999887                              34678999999873  22  3468999999999


Q ss_pred             CeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCC
Q psy15955        295 PVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPR  358 (475)
Q Consensus       295 P~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~  358 (475)
                      |.|||+|.|.+...   ...|.|+|||++.++ +++||.+.+++.+...+...+.|.++....+
T Consensus        83 P~WnE~F~~~~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~  142 (158)
T cd04015          83 PVWNESFHIYCAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG  142 (158)
T ss_pred             CccceEEEEEccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC
Confidence            99999999988532   246999999999875 5899999999988776666677777765433

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.61  E-value=5.3e-15  Score=126.44  Aligned_cols=114  Identities=28%  Similarity=0.423  Sum_probs=90.7

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      |.|.|.|++|++|+..+. +.+||||++++.  +   .+++|++++++.||.|||+|.|.++..   ...|.|+|||++.
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g--~---~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~   72 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG--N---QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDT   72 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC--C---EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCC
Confidence            679999999999998887 889999999872  2   357899999999999999999998643   4579999999999


Q ss_pred             CCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        325 IGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      +++|++||++.+++.+........+..++  ..++.+..|.+-..
T Consensus        73 ~~~dd~iG~a~i~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~  115 (145)
T cd04038          73 FSKDDSMGEAEIDLEPLVEAAKLDHLRDT--PGGTQIKKVLPSVE  115 (145)
T ss_pred             CCCCCEEEEEEEEHHHhhhhhhhhccccC--CCCEEEEEEecCCC
Confidence            99999999999998776654444333222  23556677777543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.61  E-value=3.9e-15  Score=122.13  Aligned_cols=92  Identities=32%  Similarity=0.510  Sum_probs=77.0

Q ss_pred             EEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---CceEEeeeecCCCCceeeeeEEeecccccccc----cceEEEEEEe
Q psy15955        119 ILRVISAKELPAKDMSGTSDPYVKVALLPDK---KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ----SRVLHLHVFD  191 (475)
Q Consensus       119 ~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~----~~~L~~~V~d  191 (475)
                      .+..++|++|+..+..+.+||||+|++.+.+   ...++|+++++++||+|| +|.|.   ...+.    ...|.|+|||
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~d   78 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVYD   78 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEEE
Confidence            4556899999999999999999999986543   235799999999999999 67765   33332    4689999999


Q ss_pred             eCCCCCCccccceeeccccccCC
Q psy15955        192 YDRFSRDDSIGEVFLPLCQVDLS  214 (475)
Q Consensus       192 ~d~~~~~~~iG~~~i~l~~l~~~  214 (475)
                      ++..+++++||++.++++++...
T Consensus        79 ~d~~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          79 YDSSGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             eCCCCCCcEEEEEEEEHHHHhcC
Confidence            99999999999999999999743

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.61  E-value=3.8e-15  Score=126.73  Aligned_cols=95  Identities=23%  Similarity=0.488  Sum_probs=79.6

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc-------------ccccc
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE-------------KIREC  313 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-------------~l~~~  313 (475)
                      |.|.|++|++|+.. ..+.+||||++++... ....+++|++++++.||.|||+|.|.+...             ++...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence            57899999999988 7889999999998643 223567999999999999999999997653             33556


Q ss_pred             eEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        314 SLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       314 ~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      .|.|+|||++..+++++||++.+++.+...
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~  108 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ  108 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEEEehhhccC
Confidence            899999999998899999999998865543

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.61  E-value=4.3e-15  Score=125.42  Aligned_cols=91  Identities=29%  Similarity=0.404  Sum_probs=78.1

Q ss_pred             eeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      |.|.|.|++|++|+..+.  .+.+||||++++.  +   .+++|++++++.||.|||+|.|.+..  .....|.|+|||+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~--~---~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~   73 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG--A---QRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDK   73 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC--C---EEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEEC
Confidence            578999999999999988  8899999999862  2   35689999999999999999999864  2345899999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~  342 (475)
                      +..+++++||++.+++.+..
T Consensus        74 ~~~~~~~~lG~~~i~l~~~~   93 (128)
T cd04024          74 DRFAGKDYLGEFDIALEEVF   93 (128)
T ss_pred             CCCCCCCcceEEEEEHHHhh
Confidence            99889999999999875543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.60  E-value=3.8e-15  Score=125.23  Aligned_cols=96  Identities=20%  Similarity=0.265  Sum_probs=77.6

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      |.|+|++|+||+.  ..|.+||||++++..   ...+++|++++++.||.|||.|.|.+...   ...|.|+|||++..+
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~   72 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKS   72 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCC
Confidence            5799999999988  678999999998731   12357999999999999999999998642   357999999999999


Q ss_pred             CCeeeEEEEEcCcCCCCCcccccc
Q psy15955        327 RNELIGRILLAGKNGSGASETKHW  350 (475)
Q Consensus       327 ~d~~lG~~~i~l~~~~~~~~~~~w  350 (475)
                      ++++||++.+++.+.........|
T Consensus        73 ~~~~lG~~~i~l~~l~~~~~~~~~   96 (126)
T cd08678          73 DSKFLGLAIVPFDELRKNPSGRQI   96 (126)
T ss_pred             CCceEEEEEEeHHHhccCCceeEE
Confidence            999999999988655443333333

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>KOG1327|consensus

Probab=99.59  E-value=1.5e-14  Score=143.52  Aligned_cols=264  Identities=22%  Similarity=0.300  Sum_probs=193.2

Q ss_pred             CCCCCCCCCCcEEEEEEeCCC----------------CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEee
Q psy15955        129 PAKDMSGTSDPYVKVALLPDK----------------KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDY  192 (475)
Q Consensus       129 ~~~~~~~~~dpyv~v~l~~~~----------------~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~  192 (475)
                      ...|..++.||-|.+.....+                ....+|+++.+.+||.|.+.|... +-.+  ..+.|+|.++|.
T Consensus         3 ~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~-y~fE--~vQ~l~~~~~~~   79 (529)
T KOG1327|consen    3 MAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQ-YRFE--KVQLLRFEVYDI   79 (529)
T ss_pred             cccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechh-heee--eeeeEEEEEeec
Confidence            344556677777776652111                113489999999999999987654 2222  346899999998


Q ss_pred             CCC----CCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccc
Q psy15955        193 DRF----SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDP  268 (475)
Q Consensus       193 d~~----~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dp  268 (475)
                      +..    ...+|+|++.+.+.++........-+.+++......|.|.+.++-.........-.++|++|..+|.++++||
T Consensus        80 ~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~  159 (529)
T KOG1327|consen   80 DSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDP  159 (529)
T ss_pred             CCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCc
Confidence            753    4578999999999999766655555555555556789999998877666566666688999999999999999


Q ss_pred             eEEEEEEe-CceeeeeeecccccCCCCCeecceEEEeeccccccc----ceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        269 YVKVWLQF-GEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRE----CSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       269 yv~v~l~~-~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~----~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      |..++-.. ++.....++|++++++++|.|.+   |.++...++.    +++++.+||++..+++++||++..++.....
T Consensus       160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             ceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            99998753 66777899999999999999999   8888777774    7799999999999999999999987655432


Q ss_pred             Cccccccccc----------ccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCch
Q psy15955        344 ASETKHWQDM----------ITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAA  398 (475)
Q Consensus       344 ~~~~~~w~~~----------~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~  398 (475)
                      ......|.-+          ....+.....-+.+.....|.++...+-..+..+..++..+||..
T Consensus       237 ~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p  301 (529)
T KOG1327|consen  237 PGSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDP  301 (529)
T ss_pred             cCCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCC
Confidence            1011111111          111233444455555677788888888788888888888888765

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.59  E-value=6.5e-15  Score=123.62  Aligned_cols=100  Identities=21%  Similarity=0.368  Sum_probs=78.5

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      ..|.|.|++|+||+..   +.+||||++++.  +  ..+.+|++ +++.||.|||+|.|.+...++  ..+.|.|||++.
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~--~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~   73 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN--E--VKVARTKV-REGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAK   73 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEEC--C--EeEEEeec-CCCCCCccCCEEEEecCCCCc--CEEEEEEEECCC
Confidence            4699999999999875   468999999882  2  23357877 458999999999998654443  368899999999


Q ss_pred             CCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955        325 IGRNELIGRILLAGKNGSGASETKHWQDMI  354 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~  354 (475)
                      .+++++||++.+++.+...+...+.|..+.
T Consensus        74 ~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~  103 (126)
T cd08400          74 RSKDSEIAEVTVQLSKLQNGQETDEWYPLS  103 (126)
T ss_pred             CCCCCeEEEEEEEHhHccCCCcccEeEEcc
Confidence            999999999999987766555555565554

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.59  E-value=5.9e-15  Score=121.19  Aligned_cols=92  Identities=27%  Similarity=0.383  Sum_probs=76.8

Q ss_pred             CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec--ccccccceEEEEE
Q psy15955        242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP--WEKIRECSLNVMV  319 (475)
Q Consensus       242 ~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~--~~~l~~~~l~i~V  319 (475)
                      |....|+|.|++|++|+    .+.+||||++++.  +   .+++|++++++.||.|||+|.|.+.  ..++.+..|.|+|
T Consensus         1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V   71 (111)
T cd04011           1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVG--G---QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISV   71 (111)
T ss_pred             CCcEEEEEEEEEcccCC----CCCCCCEEEEEEC--C---EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEE
Confidence            34568999999999998    5789999999874  2   2468999999999999999999863  3345566899999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCC
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      ||++.++++++||++.+++.+..
T Consensus        72 ~d~~~~~~~~~iG~~~i~l~~v~   94 (111)
T cd04011          72 YDSRSLRSDTLIGSFKLDVGTVY   94 (111)
T ss_pred             EcCcccccCCccEEEEECCcccc
Confidence            99999988999999999886543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.59  E-value=6e-15  Score=119.48  Aligned_cols=83  Identities=23%  Similarity=0.342  Sum_probs=69.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEee---
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDY---  192 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~---  192 (475)
                      |.|+|++|++|+     +.+||||++++.+.+  ..+.||+++++++||+|||+|.|. ++    ....|++.|||+   
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~----~s~~L~~~v~d~~~~   70 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LE----GSQTLRILCYEKCYS   70 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eC----CCCEEEEEEEEcccc
Confidence            579999999996     458999999987643  346899999999999999999998 43    256899999998   


Q ss_pred             ----CCCCCCccccceeecccc
Q psy15955        193 ----DRFSRDDSIGEVFLPLCQ  210 (475)
Q Consensus       193 ----d~~~~~~~iG~~~i~l~~  210 (475)
                          |..++|++||.+.+.|+-
T Consensus        71 ~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          71 KVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccccccCcccEEEEEEEEECH
Confidence                466789999888777744

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.59  E-value=1.4e-14  Score=120.37  Aligned_cols=93  Identities=29%  Similarity=0.469  Sum_probs=79.4

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      |.|.|.|++|++|+..+..+.+||||++++.  +  ..+++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~--~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~   73 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--G--IVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEK   73 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--C--EEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCC
Confidence            5789999999999999989999999999872  2  2457899999999999999999988643   2479999999999


Q ss_pred             CCCCeeeEEEEEcCcCCCCC
Q psy15955        325 IGRNELIGRILLAGKNGSGA  344 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~~~  344 (475)
                      .+++++||++.+++.+....
T Consensus        74 ~~~d~~IG~~~~~l~~l~~~   93 (120)
T cd04045          74 VGKDRSLGSVEINVSDLIKK   93 (120)
T ss_pred             CCCCCeeeEEEEeHHHhhCC
Confidence            99999999999988665543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.59  E-value=1.3e-14  Score=121.25  Aligned_cols=91  Identities=33%  Similarity=0.473  Sum_probs=76.3

Q ss_pred             eeEEEEEEeeccCccccc------CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEE
Q psy15955        245 SVLTITLLKARNLKAKDI------NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVM  318 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~  318 (475)
                      |.|.|.|++|++|+..+.      .+.+||||++++.  +   .+++|++++++.||.|||+|.|.+...  ....|.|+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~   73 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG--A---QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIE   73 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC--C---EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEE
Confidence            468999999999998875      3689999999873  2   457899999999999999999988642  34579999


Q ss_pred             EEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        319 VMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       319 V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      |||++.. ++++||.+.+++.+...
T Consensus        74 v~d~~~~-~~~~iG~~~i~l~~l~~   97 (121)
T cd08391          74 LFDEDPD-KDDFLGRLSIDLGSVEK   97 (121)
T ss_pred             EEecCCC-CCCcEEEEEEEHHHhcc
Confidence            9999988 89999999998865543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.58  E-value=1e-14  Score=121.65  Aligned_cols=86  Identities=31%  Similarity=0.545  Sum_probs=74.8

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      |.|.|++|++|+..+..|.+||||++++.  +.  ...+|++++++.||.|||.|.|.+...   ...|.|.|||++..+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~   74 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NE--VIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLS   74 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CE--eeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCC
Confidence            78999999999999999999999999762  22  346899999999999999999998643   247999999999999


Q ss_pred             CCeeeEEEEEcCc
Q psy15955        327 RNELIGRILLAGK  339 (475)
Q Consensus       327 ~d~~lG~~~i~l~  339 (475)
                      ++++||++.+++.
T Consensus        75 ~d~~iG~~~~~~~   87 (121)
T cd04054          75 RDDVIGKVSLTRE   87 (121)
T ss_pred             CCCEEEEEEEcHH
Confidence            9999999999764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.58  E-value=1.1e-14  Score=121.46  Aligned_cols=91  Identities=29%  Similarity=0.377  Sum_probs=76.1

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      ..+.|.|+|++|++|+. +..+.+||||+|++.  ++   +++|++++++.||+|||+|.|...... ....|.|+|||+
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~--~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~   98 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG--GQ---EKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDR   98 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC--Cc---cccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeC
Confidence            45799999999999984 677889999999873  22   679999999999999999999742111 345799999999


Q ss_pred             cCCCCCeeeEEEEEcCcC
Q psy15955        323 DNIGRNELIGRILLAGKN  340 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~  340 (475)
                      +..++|++||++.+++..
T Consensus        99 d~~s~dd~IG~~~i~l~~  116 (127)
T cd04032          99 DNGWDDDLLGTCSVVPEA  116 (127)
T ss_pred             CCCCCCCeeEEEEEEecC
Confidence            999999999999998853

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.58  E-value=1.5e-14  Score=121.26  Aligned_cols=104  Identities=28%  Similarity=0.441  Sum_probs=83.2

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccC-CCCCeecceEEEeeccccc-ccceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC-NLNPVFNESFSFNVPWEKI-RECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~l-~~~~l~i~V~d~  322 (475)
                      |.|.|.|++|++|+..+..+.+||||++++.  +   ..++|++.++ +.||.|||+|.|.+..... ....|.|+|||+
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~   75 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR--T---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK   75 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEEC--C---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence            5789999999999999888999999999862  2   2457887774 8999999999999876532 245799999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        323 DNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      +..+++++||++.+++.+.......+.|..+
T Consensus        76 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l  106 (124)
T cd04049          76 DNFSDDDFIGEATIHLKGLFEEGVEPGTAEL  106 (124)
T ss_pred             ccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence            9998999999999988766554444455443

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.58  E-value=1.3e-14  Score=120.82  Aligned_cols=85  Identities=28%  Similarity=0.424  Sum_probs=72.0

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .|.|.|++|+||+..    .+||||++++..     .+.+|++++++.||.|||+|.|.+..  +....|.|+|||++..
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~   69 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA   69 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC
Confidence            478999999999887    689999998732     35699999999999999999999753  3456799999999977


Q ss_pred             CCCeeeEEEEEcCcCCC
Q psy15955        326 GRNELIGRILLAGKNGS  342 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~~~  342 (475)
                       ++++||++.+++.+..
T Consensus        70 -~~~~lG~~~i~l~~l~   85 (121)
T cd08378          70 -KDDFLGGVCFDLSEVP   85 (121)
T ss_pred             -cCceeeeEEEEhHhCc
Confidence             7899999999886543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.58  E-value=1.5e-14  Score=120.61  Aligned_cols=102  Identities=27%  Similarity=0.429  Sum_probs=81.8

Q ss_pred             EEEeeccCcccccCCCccceEEEEEEeCc--eeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC---
Q psy15955        250 TLLKARNLKAKDINGKSDPYVKVWLQFGE--KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN---  324 (475)
Q Consensus       250 ~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~---  324 (475)
                      ..++|++|+..+..+.+||||++++....  ....+++|++++++.||.|||+|.|.+..+..  ..|.|+|||++.   
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~   82 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSK   82 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcC
Confidence            34899999999999999999999997654  45567899999999999999999998654432  469999999997   


Q ss_pred             -CCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        325 -IGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       325 -~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                       .+++++||++.+++.++...+....|.++
T Consensus        83 ~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l  112 (120)
T cd04048          83 DLSDHDFLGEAECTLGEIVSSPGQKLTLPL  112 (120)
T ss_pred             CCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence             78999999999988665544333334333

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.58  E-value=1.5e-14  Score=121.02  Aligned_cols=102  Identities=32%  Similarity=0.531  Sum_probs=81.2

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .|+|.|++|++|+..+..+.+||||++++.  +. ....+|++++++.||.|||+|.|.+...+  ...|.|+|||++.+
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~~   75 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLG--KK-KINDRDNYIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDLL   75 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEEC--Ce-eccceeeEEECCCCCccceEEEEEecCCC--CCEEEEEEEECCCC
Confidence            378999999999999999999999999873  22 23467888889999999999999875332  45799999999999


Q ss_pred             CCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955        326 GRNELIGRILLAGKNGSGASETKHWQDMIT  355 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~  355 (475)
                      +++++||++.+++.+...   ..+|..+..
T Consensus        76 ~~dd~iG~~~i~l~~~~~---~~~~~~~~~  102 (124)
T cd04037          76 GSDDLIGETVIDLEDRFF---SKHRATCGL  102 (124)
T ss_pred             CCCceeEEEEEeeccccc---chHHHhccC
Confidence            999999999998865331   235555443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.57  E-value=3e-14  Score=120.53  Aligned_cols=92  Identities=29%  Similarity=0.396  Sum_probs=76.2

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCcee--------eeeeecccccCCCCCee-cceEEEeecccccccceEE
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKR--------IEKRKTQIFKCNLNPVF-NESFSFNVPWEKIRECSLN  316 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~l~~~~l~  316 (475)
                      .+.|.+++|+||+ .+..|++||||++++.+++..        ..+++|+++++++||+| ||+|.|.+...    ..|.
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~   76 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVLE   76 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEEE
Confidence            3678999999998 677899999999999765543        24689999999999999 99999998643    3699


Q ss_pred             EEEEeccCCCC---CeeeEEEEEcCcCCC
Q psy15955        317 VMVMDFDNIGR---NELIGRILLAGKNGS  342 (475)
Q Consensus       317 i~V~d~~~~~~---d~~lG~~~i~l~~~~  342 (475)
                      |+|||++..++   +++||++.+++.+..
T Consensus        77 v~V~D~~~~~~~~~~d~lG~~~i~l~~l~  105 (137)
T cd08691          77 IEVKDKFAKSRPIIRRFLGKLSIPVQRLL  105 (137)
T ss_pred             EEEEecCCCCCccCCceEEEEEEEHHHhc
Confidence            99999876444   799999999886544

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.57  E-value=1.5e-14  Score=122.92  Aligned_cols=94  Identities=34%  Similarity=0.488  Sum_probs=79.5

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeC--ceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFG--EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      .|.|+|++|++|+..+..+.+||||++++...  +....+++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~   77 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN   77 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence            37899999999999998899999999998643  2233456899999999999999999998653   246999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCC
Q psy15955        324 NIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~  342 (475)
                      ..+++++||++.+++.+..
T Consensus        78 ~~~~~~~iG~~~i~l~~l~   96 (133)
T cd04033          78 RLTRDDFLGQVEVPLNNLP   96 (133)
T ss_pred             CCCCCCeeEEEEEEHHHCC
Confidence            9999999999999876544

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.56  E-value=2.8e-14  Score=118.75  Aligned_cols=90  Identities=30%  Similarity=0.452  Sum_probs=77.1

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      |.|.|+|++|++|+..+..+.+||||++++.  +   ..++|++++++.||.|+|+|.|.+..  + ...|.|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~--~---~~~~T~~~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~   72 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV--N---ARLQTHTIYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDEDK   72 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC--C---EeeecceecCCcCCccCcEEEEEecC--c-CCEEEEEEEECCC
Confidence            5789999999999999988999999999873  2   24689999999999999999999853  2 3579999999999


Q ss_pred             CCCCeeeEEEEEcCcCCC
Q psy15955        325 IGRNELIGRILLAGKNGS  342 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~  342 (475)
                      .+++++||++.+++.+..
T Consensus        73 ~~~~~~iG~~~~~l~~~~   90 (119)
T cd08377          73 DKKPEFLGKVAIPLLSIK   90 (119)
T ss_pred             CCCCceeeEEEEEHHHCC
Confidence            889999999999875543

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.56  E-value=2e-14  Score=120.26  Aligned_cols=89  Identities=20%  Similarity=0.343  Sum_probs=76.6

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .|+|+|++|++|+..+..+.+||||++++.  +  ..+++|++++++.||.|||+|.|.+..    ...|.|+|||++..
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~   72 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD--G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKF   72 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEEC--C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCC
Confidence            378999999999999999999999999873  2  245789999999999999999999964    35799999999988


Q ss_pred             CC--CeeeEEEEEcCcCCC
Q psy15955        326 GR--NELIGRILLAGKNGS  342 (475)
Q Consensus       326 ~~--d~~lG~~~i~l~~~~  342 (475)
                      ++  +++||++.+++.+..
T Consensus        73 ~~~~d~~lG~~~i~l~~l~   91 (123)
T cd08382          73 KKKDQGFLGCVRIRANAVL   91 (123)
T ss_pred             CCCCCceEeEEEEEHHHcc
Confidence            75  589999999886643

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.56  E-value=2.8e-14  Score=120.04  Aligned_cols=91  Identities=34%  Similarity=0.485  Sum_probs=77.8

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .|.|+|++|++|+..+..+.+||||++++...  ....++|++++++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~   77 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG--KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFV   77 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCC--CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCC
Confidence            57899999999999999999999999976322  23457999999999999999999998754  245799999999998


Q ss_pred             CCCeeeEEEEEcCcC
Q psy15955        326 GRNELIGRILLAGKN  340 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~  340 (475)
                      +++++||++.+++..
T Consensus        78 ~~~~~iG~~~i~l~~   92 (126)
T cd04043          78 GKHDLCGRASLKLDP   92 (126)
T ss_pred             CCCceEEEEEEecCH
Confidence            899999999998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.56  E-value=1.9e-14  Score=116.51  Aligned_cols=83  Identities=18%  Similarity=0.307  Sum_probs=70.0

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec----
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF----  322 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~----  322 (475)
                      |.|+|.+|+||+     +.+||||++++.+.+....+.+|+++++++||+|||+|.|.++.    ...|.+.|||+    
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~   71 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSK   71 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEccccc
Confidence            579999999995     45899999988665543457899999999999999999999863    34899999998    


Q ss_pred             ---cCCCCCeeeEEEEEcC
Q psy15955        323 ---DNIGRNELIGRILLAG  338 (475)
Q Consensus       323 ---~~~~~d~~lG~~~i~l  338 (475)
                         +..++|+++|...+.+
T Consensus        72 ~~~d~~~~d~~~G~g~i~L   90 (118)
T cd08686          72 VKLDGEGTDAIMGKGQIQL   90 (118)
T ss_pred             ccccccCcccEEEEEEEEE
Confidence               4668899999988866

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.55  E-value=4.4e-14  Score=120.22  Aligned_cols=108  Identities=25%  Similarity=0.419  Sum_probs=82.5

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec-c----cccc--cceEEEE
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP-W----EKIR--ECSLNVM  318 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~-~----~~l~--~~~l~i~  318 (475)
                      .|+|.|++|++|+..+..|.+||||+|++.  +   .+++|++++++.||.|||.|.|.+. .    +++.  ...|.|+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~   76 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFL--N---QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE   76 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEEC--C---eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence            689999999999999999999999999873  2   3568999999999999999999742 1    1111  2468999


Q ss_pred             EEeccCCCCCeeeEEEEEc-CcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        319 VMDFDNIGRNELIGRILLA-GKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       319 V~d~~~~~~d~~lG~~~i~-l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      |||++..++|++||++.+. +.....           ..++.....|++|..
T Consensus        77 V~d~d~~~~d~~iG~~~i~~~~~~~~-----------~~~~~~~~~W~~L~~  117 (135)
T cd04017          77 LFDQDSVGKDEFLGRSVAKPLVKLDL-----------EEDFPPKLQWFPIYK  117 (135)
T ss_pred             EEeCcCCCCCccceEEEeeeeeeccc-----------CCCCCCCceEEEeec
Confidence            9999999999999999873 211111           013455678888863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.55  E-value=2.6e-14  Score=120.37  Aligned_cols=95  Identities=28%  Similarity=0.473  Sum_probs=75.7

Q ss_pred             EEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCee
Q psy15955        251 LLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNEL  330 (475)
Q Consensus       251 v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~  330 (475)
                      |++|++|+.  ..+.+||||++++.  +   .+++|++++++.||.|||+|.|.+.........|.|+|||++..+++++
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~--~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~   74 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFR--G---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL   74 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEEC--C---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCce
Confidence            688999998  67889999999872  2   3468999999999999999999986443345689999999999999999


Q ss_pred             eEEEEEcCcCCCCCcccccccc
Q psy15955        331 IGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       331 lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      ||++.+++.+.........|..
T Consensus        75 iG~~~~~l~~l~~~~~~~~~~~   96 (127)
T cd08373          75 IGSATVSLQDLVSEGLLEVTEP   96 (127)
T ss_pred             EEEEEEEhhHcccCCceEEEEe
Confidence            9999998866554333333333

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.54  E-value=3.9e-14  Score=120.17  Aligned_cols=92  Identities=24%  Similarity=0.317  Sum_probs=77.0

Q ss_pred             ceeEEEEEEeeccCcccccC----------CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccc
Q psy15955        244 NSVLTITLLKARNLKAKDIN----------GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIREC  313 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~  313 (475)
                      .+.|.|+|++|++|...+..          +.+||||++++.  ++  ...+|++++++.||.|||+|.|.+..    ..
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~--~~~kT~~~~~t~~P~Wne~f~~~v~~----~~   74 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DT--HIGKTSTKPKTNSPVWNEEFTTEVHN----GR   74 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CE--EEeEEeEcCCCCCCCcceeEEEEcCC----CC
Confidence            46899999999999988752          679999999873  32  23588888999999999999999962    35


Q ss_pred             eEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        314 SLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       314 ~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      .|.|.|||++..+++++||++.+++.+...
T Consensus        75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~  104 (132)
T cd04014          75 NLELTVFHDAAIGPDDFVANCTISFEDLIQ  104 (132)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence            799999999988899999999998866553

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.54  E-value=3.4e-14  Score=117.51  Aligned_cols=101  Identities=37%  Similarity=0.529  Sum_probs=81.4

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      |+|.|++|++|+..+..+.+||||++++.  +  ...++|+++.++.+|.|||+|.|.+...  ....|.|+|||++..+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~--~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~   74 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN--G--EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGG   74 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--C--CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCC
Confidence            57899999999999888899999999873  2  2347899999999999999999998643  3457999999999998


Q ss_pred             CCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        327 RNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       327 ~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      ++++||++.+++.+...+.....|.++
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L  101 (115)
T cd04040          75 KDDLLGSAYIDLSDLEPEETTELTLPL  101 (115)
T ss_pred             CCCceEEEEEEHHHcCCCCcEEEEEEC
Confidence            999999999988665543333344433

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.54  E-value=6.1e-14  Score=118.01  Aligned_cols=88  Identities=34%  Similarity=0.529  Sum_probs=74.1

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .|.|.|++|++|+..+..+.+||||++++.  +   .+++|++++++.||.|||+|.|.+...   ...|.|+|||++..
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~   73 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG--K---TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDD   73 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEEC--C---EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCC
Confidence            588999999999999989999999999872  2   346899999999999999999987532   24699999999853


Q ss_pred             -----------CCCeeeEEEEEcCcCC
Q psy15955        326 -----------GRNELIGRILLAGKNG  341 (475)
Q Consensus       326 -----------~~d~~lG~~~i~l~~~  341 (475)
                                 +++++||.+.+++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~  100 (127)
T cd04027          74 IKSRLKQKFTRESDDFLGQTIIEVRTL  100 (127)
T ss_pred             cccccceeccccCCCcceEEEEEhHHc
Confidence                       4689999999987544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.51  E-value=5.3e-14  Score=118.18  Aligned_cols=94  Identities=26%  Similarity=0.360  Sum_probs=78.3

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeeccccc--ccceEEEEEEec
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKI--RECSLNVMVMDF  322 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l--~~~~l~i~V~d~  322 (475)
                      .|.|+|++|++|+..+..+.+||||+|++..    ..+++|+++. ++.||.|||.|.|.++...+  ....|.|+|||+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~   76 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE   76 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence            4789999999999999889999999998743    2345788875 58999999999999976532  245799999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      +.++++++||++.+++.+...
T Consensus        77 ~~~~~~~~lG~~~i~l~~l~~   97 (125)
T cd04051          77 RPSLGDKLIGEVRVPLKDLLD   97 (125)
T ss_pred             CCCCCCCcEEEEEEEHHHhhc
Confidence            998889999999998876554

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.51  E-value=8.8e-14  Score=116.68  Aligned_cols=96  Identities=33%  Similarity=0.413  Sum_probs=79.4

Q ss_pred             eeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        245 SVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      |.|.|+|++|++|+..+ ..+.+||||++.+...   ..+++|++++++.||.|||.|.|.+..   ....|.|+|||++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~   75 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNS---LTEPLNLTVYDFN   75 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCC---CCCEEEEEEEecC
Confidence            67999999999999765 4567899999987432   356799999999999999999999872   2457999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCCCCcc
Q psy15955        324 NIGRNELIGRILLAGKNGSGASE  346 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~~~~~  346 (475)
                      ..+++++||.+.+++.+......
T Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~   98 (124)
T cd04044          76 DKRKDKLIGTAEFDLSSLLQNPE   98 (124)
T ss_pred             CCCCCceeEEEEEEHHHhccCcc
Confidence            98899999999999876655433

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.51  E-value=8.3e-14  Score=114.18  Aligned_cols=91  Identities=26%  Similarity=0.472  Sum_probs=74.3

Q ss_pred             EEEEeeccCcccccCCCccceEEEEEEeCc-eeeeeeecccccCCCCCeecceEEEeecccccc----cceEEEEEEecc
Q psy15955        249 ITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR----ECSLNVMVMDFD  323 (475)
Q Consensus       249 v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~----~~~l~i~V~d~~  323 (475)
                      +..++|++|+..+..+.+||||+|++...+ +....++|++++++.||.|| +|.|.+  .+++    ...|.|+|||++
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~--~~l~~~~~~~~l~~~V~d~d   80 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL--QKLCNGDYDRPIKIEVYDYD   80 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH--HHhcCCCcCCEEEEEEEEeC
Confidence            445899999999999999999999986543 34567899999999999999 555553  3333    457999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCC
Q psy15955        324 NIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~  342 (475)
                      ..++|++||++.+++.++.
T Consensus        81 ~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          81 SSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCCCCcEEEEEEEEHHHHh
Confidence            9999999999999875543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.51  E-value=1.4e-13  Score=113.06  Aligned_cols=101  Identities=20%  Similarity=0.306  Sum_probs=76.6

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      +.|.|.|++|++|+..+   ..||||++.+  ++   .+.+|++.++ .||.|||.|.|.+..  .. ..|.|+|||++.
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~--g~---~k~kT~v~~~-~nP~WnE~F~F~~~~--~~-~~L~v~V~dkd~   69 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV--QN---VKSTTIAVRG-SQPCWEQDFMFEINR--LD-LGLVIELWNKGL   69 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEE--CC---EEeEeeECCC-CCCceeeEEEEEEcC--CC-CEEEEEEEeCCC
Confidence            57999999999997654   4589999977  22   3457888877 599999999999853  22 349999999986


Q ss_pred             CCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        325 IGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                      + +|++||++.|+|.+.....            ......|++|.+.
T Consensus        70 ~-~DD~lG~v~i~L~~v~~~~------------~~~~~~Wy~L~~~  102 (127)
T cd08394          70 I-WDTLVGTVWIPLSTIRQSN------------EEGPGEWLTLDSE  102 (127)
T ss_pred             c-CCCceEEEEEEhHHcccCC------------CCCCCccEecChH
Confidence            5 8999999999986544321            2233567777743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.50  E-value=1.3e-13  Score=107.17  Aligned_cols=85  Identities=39%  Similarity=0.671  Sum_probs=73.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|+|++|++|+..+..+.+||||++.+.......++|+++.++.+|.|+|+|.|. +....  ...|.|+|||.+..++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~~~V~~~~~~~~   77 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFP-LDDPD--LDSLSFEVWDKDSFGK   77 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEE-ESHGC--GTEEEEEEEEETSSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeee-eeccc--ccceEEEEEECCCCCC
Confidence            78999999999998888899999999997554456899999999999999999998 44443  4459999999999988


Q ss_pred             Ccccccee
Q psy15955        198 DDSIGEVF  205 (475)
Q Consensus       198 ~~~iG~~~  205 (475)
                      +++||++.
T Consensus        78 ~~~iG~~~   85 (85)
T PF00168_consen   78 DELIGEVK   85 (85)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEC
Confidence            99999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.49  E-value=2.5e-13  Score=114.11  Aligned_cols=88  Identities=22%  Similarity=0.352  Sum_probs=75.0

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      ...|+|+|++|++|...+..|.+||||++++  ++   ..++|++++++.||.|||.|.|.+...   ...|.|+|||++
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~   73 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC--EG---ESVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSN   73 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE--CC---EEEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECC
Confidence            3578999999999999999999999999975  23   246899999999999999999987532   457999999998


Q ss_pred             CCCCCeeeEEEEEcCcC
Q psy15955        324 NIGRNELIGRILLAGKN  340 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~  340 (475)
                      ..+ |++||.+.+++..
T Consensus        74 ~~~-d~~lG~~~~~l~~   89 (126)
T cd04046          74 LLC-DEFLGQATLSADP   89 (126)
T ss_pred             CCC-CCceEEEEEeccc
Confidence            874 8999999998753

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.48  E-value=2.4e-13  Score=113.37  Aligned_cols=97  Identities=29%  Similarity=0.394  Sum_probs=82.2

Q ss_pred             EEEEEEEeecCCCCC--CCC--CCCcEEEEEEeCCCCceEEeeeecCCCC--ceeeeeEEeecccc--------------
Q psy15955        118 LILRVISAKELPAKD--MSG--TSDPYVKVALLPDKKHRLETKIKRRTLN--PRWNETLYFEGFPI--------------  177 (475)
Q Consensus       118 L~v~v~~a~~L~~~~--~~~--~~dpyv~v~l~~~~~~~~kT~v~~~~~n--P~w~e~f~f~~~~~--------------  177 (475)
                      |+|.|..|++++..+  ..|  .+||||++.+.+....+++|.|.++++|  |+||++|.|. ++.              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeecc
Confidence            789999999976543  356  4999999999766556789999999999  9999999988 555              


Q ss_pred             -------cccccceEEEEEEeeCCCCCCccccceeeccccccCCC
Q psy15955        178 -------QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE  215 (475)
Q Consensus       178 -------~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~  215 (475)
                             +.+....|.++|||.|.+++|++||++.++|..+..+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                   44556789999999999999999999999999886554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.47  E-value=2.7e-13  Score=113.03  Aligned_cols=96  Identities=28%  Similarity=0.366  Sum_probs=80.1

Q ss_pred             eEEEEEEeeccCcccc--cCC--CccceEEEEEEeCceeeeeeecccccCCCC--CeecceEEEeecc------------
Q psy15955        246 VLTITLLKARNLKAKD--ING--KSDPYVKVWLQFGEKRIEKRKTQIFKCNLN--PVFNESFSFNVPW------------  307 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~--~~~--~~dpyv~v~l~~~~~~~~~~~T~~~~~t~n--P~w~e~f~f~v~~------------  307 (475)
                      .|+|.|++|++++..+  ..|  .+||||++++.+.  ...+++|.++.+++|  |.||+.|.|+++.            
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~   78 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK   78 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence            3789999999966443  355  4999999999765  345789999999999  9999999999766            


Q ss_pred             ---------cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        308 ---------EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       308 ---------~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                               +.+....|.|+|||.|.+++|++||.+++++.....
T Consensus        79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~  123 (133)
T cd08374          79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR  123 (133)
T ss_pred             ccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence                     556678899999999999999999999998865443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.47  E-value=1.3e-13  Score=156.41  Aligned_cols=120  Identities=18%  Similarity=0.317  Sum_probs=99.6

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc-cceEEEEEEee
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ-SRVLHLHVFDY  192 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~-~~~L~~~V~d~  192 (475)
                      ..|.|.|+|++|++|.  +..+.+||||++.+..  ..+.||++++++.||+|||+|.|.   ++++. ...|.|+|||+
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~---~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWA---FDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeee---ecCCCCCCceEEEEEec
Confidence            4678999999999998  4478999999999942  336689999999999999999976   33432 35699999999


Q ss_pred             CCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccc---eeeeeeecC
Q psy15955        193 DRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGE---LLTSLCYHP  242 (475)
Q Consensus       193 d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~---l~l~l~~~~  242 (475)
                      |.+++ +.||.+.|+|.++..++....||+|.+ ++++.|+   |++.+.|.+
T Consensus      2051 d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2051 NTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CccCC-CCCceEEEEHHHHhcCceeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence            99965 589999999999998888899999985 3456677   998887754

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.45  E-value=6.6e-13  Score=103.08  Aligned_cols=85  Identities=46%  Similarity=0.662  Sum_probs=74.7

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      |.|+|++|+||+..+..+..||||++++.....  ..++|++++++.+|.|+++|.|.+...+..  .|.|+|||++..+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~   76 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFG   76 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCC
Confidence            689999999999988888999999999865444  568999999999999999999998766654  4999999999999


Q ss_pred             CCeeeEEEE
Q psy15955        327 RNELIGRIL  335 (475)
Q Consensus       327 ~d~~lG~~~  335 (475)
                      ++++||++.
T Consensus        77 ~~~~iG~~~   85 (85)
T PF00168_consen   77 KDELIGEVK   85 (85)
T ss_dssp             SEEEEEEEE
T ss_pred             CCCEEEEEC
Confidence            999999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.44  E-value=8.4e-13  Score=109.50  Aligned_cols=84  Identities=32%  Similarity=0.547  Sum_probs=70.3

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      |.|+|++|++|+..   +.+||||.+++.  +  ..+++|+++++ .||.|||+|.|.++..++....|.|.+||.+...
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~   73 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLD--Q--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD   73 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEEC--C--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence            78999999999876   789999999873  2  23468999988 9999999999999876666667999999988777


Q ss_pred             CCeeeEEEEEcC
Q psy15955        327 RNELIGRILLAG  338 (475)
Q Consensus       327 ~d~~lG~~~i~l  338 (475)
                      ++.++|.+.|..
T Consensus        74 ~~~~~g~v~l~~   85 (117)
T cd08383          74 RDIVIGKVALSK   85 (117)
T ss_pred             CeeEEEEEEecC
Confidence            788899887743

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>PLN03008 Phospholipase D delta

Probab=99.44  E-value=2.5e-13  Score=141.61  Aligned_cols=112  Identities=20%  Similarity=0.297  Sum_probs=88.7

Q ss_pred             CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        264 GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       264 ~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      +++||||+|.+.  +.  .+.||++++++.||+|||+|.|.|...   ...|.|+|||+|.++ +++||++.|++.++..
T Consensus        75 ~tSDPYV~I~Lg--~~--rv~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~  146 (868)
T PLN03008         75 ITSDPYVTVVVP--QA--TLARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS  146 (868)
T ss_pred             CCCCceEEEEEC--Cc--ceeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCC
Confidence            467999999882  22  345899999999999999999998753   247999999999997 5899999999999988


Q ss_pred             CcccccccccccCCCcceeeeeccCCCCcccceeecccce
Q psy15955        344 ASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVS  383 (475)
Q Consensus       344 ~~~~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~  383 (475)
                      ++..+.|.+++...++....-..|.-+-.|..+.+...+.
T Consensus       147 Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~~  186 (868)
T PLN03008        147 GERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR  186 (868)
T ss_pred             CCceEEEEEccccCCCCCCCCcEEEEEEEEEEcccccccc
Confidence            8889999999987776665556665555555555544333

>KOG1326|consensus

Probab=99.44  E-value=2.6e-13  Score=140.93  Aligned_cols=248  Identities=25%  Similarity=0.368  Sum_probs=163.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCce--EEeeeecCCCCceeeeeEEeecccccccccceEEEEEEee
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHR--LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDY  192 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~--~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~  192 (475)
                      ..-++|.|++|-+|.+.|.+|.+|||+++.++   +..  -++..+.+++||+|.+-|.+.   ...+....|.++|||+
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~---~~lp~ek~l~v~vyd~  685 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELE---CLLPFEKDLIVEVYDH  685 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhh---cccchhhcceeEEEEe
Confidence            34578999999999999999999999999983   222  367789999999999998876   3334456899999999


Q ss_pred             CCCCCCccccceeeccccccCCC--------------CcceeeccCCCC----------C--------------------
Q psy15955        193 DRFSRDDSIGEVFLPLCQVDLSE--------------KPTFWKALKPPA----------K--------------------  228 (475)
Q Consensus       193 d~~~~~~~iG~~~i~l~~l~~~~--------------~~~~~~~L~~~~----------~--------------------  228 (475)
                      |..+.|+.||+..+.|+.--...              ....|+.-..+.          +                    
T Consensus       686 D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~  765 (1105)
T KOG1326|consen  686 DLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESD  765 (1105)
T ss_pred             ecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhh
Confidence            99999999999999987632110              011233221100          0                    


Q ss_pred             -------------------------------------------------CcccceeeeeeecC---------------Cc
Q psy15955        229 -------------------------------------------------DKCGELLTSLCYHP---------------SN  244 (475)
Q Consensus       229 -------------------------------------------------~~~G~l~l~l~~~~---------------~~  244 (475)
                                                                       -..|++.+=+.+.|               ..
T Consensus       766 ~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~  845 (1105)
T KOG1326|consen  766 IYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKK  845 (1105)
T ss_pred             hhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhh
Confidence                                                             01133333332222               24


Q ss_pred             eeEEEEEEeeccCcccccC----CCccceEEEEEEeCceeeeeeecccccCCCC--CeecceEEEe---ecccccc----
Q psy15955        245 SVLTITLLKARNLKAKDIN----GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLN--PVFNESFSFN---VPWEKIR----  311 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~n--P~w~e~f~f~---v~~~~l~----  311 (475)
                      ..++|.|+.-.+....+..    .++|.||+-++..+.  -.+++|.+.+.++.  -.||-.|.|.   .+.++++    
T Consensus       846 ~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde--e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~k  923 (1105)
T KOG1326|consen  846 YELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE--EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAK  923 (1105)
T ss_pred             eeEEEEEeeccceeecCccceeeeccceEEecccccch--hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhh
Confidence            5688988888877665533    368999998876443  34667888876642  2344444443   3333332    


Q ss_pred             --------------cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccC--------CCcceeeeeccCC
Q psy15955        312 --------------ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITK--------PRQTIVQWHRLKP  369 (475)
Q Consensus       312 --------------~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~--------p~~~~s~w~~L~~  369 (475)
                                    -..|.|+|||.|.+++|+|||..+++|.+...+.....-..+...        .++.+.+|+++..
T Consensus       924 ke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a 1003 (1105)
T KOG1326|consen  924 KEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQA 1003 (1105)
T ss_pred             hhhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeee
Confidence                          145999999999999999999999998764332211111111111        2467788999886


Q ss_pred             C
Q psy15955        370 D  370 (475)
Q Consensus       370 s  370 (475)
                      .
T Consensus      1004 ~ 1004 (1105)
T KOG1326|consen 1004 E 1004 (1105)
T ss_pred             c
Confidence            5

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.42  E-value=7.4e-13  Score=112.52  Aligned_cols=104  Identities=16%  Similarity=0.197  Sum_probs=82.4

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      ..|.|.|++|++|+.++     +|||.+.+.  +  ....||+++.++.||.|+|.|.|.+....   ..|.|.||+.+.
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~--~~vaRT~v~~~~~nP~W~E~F~f~~~~~~---~~l~v~v~k~~~   78 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLD--K--TLYARTTSKLKTDTLFWGEHFEFSNLPPV---SVITVNLYRESD   78 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEEC--C--EEEEEEEEEcCCCCCcceeeEEecCCCcc---cEEEEEEEEccC
Confidence            57899999999998865     899999873  2  23458999999999999999999764321   369999986543


Q ss_pred             -CC---CCeeeEEEEEcCcCCCCCcccccccccccCCCcc
Q psy15955        325 -IG---RNELIGRILLAGKNGSGASETKHWQDMITKPRQT  360 (475)
Q Consensus       325 -~~---~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~  360 (475)
                       .+   ++.+||.+.|++.+...+...+.|+.+....+..
T Consensus        79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~  118 (146)
T cd04013          79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNG  118 (146)
T ss_pred             ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCC
Confidence             22   5799999999998888888888888887655543

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.42  E-value=1.9e-12  Score=109.18  Aligned_cols=95  Identities=29%  Similarity=0.370  Sum_probs=78.7

Q ss_pred             eeEEEEEEeeccCcccc--cCCCccceEEEEEEeCce-eeeeeecccccCCC-CCeecceEEEeecccccccceEEEEEE
Q psy15955        245 SVLTITLLKARNLKAKD--INGKSDPYVKVWLQFGEK-RIEKRKTQIFKCNL-NPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~~-~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      ..|+|+|++|++|+..+  ..+..||||++++...+. ...+++|+++.++. ||.|||+|.|.+...+  ...|.|+||
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~   79 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVY   79 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEE
Confidence            36899999999999887  578899999999865543 34667899888775 9999999999987444  246999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |++.. ++++||++.+++.+..
T Consensus        80 d~~~~-~~~~iG~~~~~l~~l~  100 (128)
T cd00275          80 DEDSG-DDDFLGQACLPLDSLR  100 (128)
T ss_pred             eCCCC-CCcEeEEEEEEhHHhc
Confidence            99988 8999999999886554

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.38  E-value=2.2e-12  Score=108.15  Aligned_cols=89  Identities=30%  Similarity=0.379  Sum_probs=73.8

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      ..|.|+|.+|+ |...+..+.+||||++++.  +.  .+++|++++++.||.|||+|.|.+..    ...|.|+|||++.
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~--~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~   72 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQ--PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT   72 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--Cc--ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC
Confidence            36899999998 5555557889999999873  22  35789999999999999999999863    3479999999999


Q ss_pred             CCCCeeeEEEEEcCcCCC
Q psy15955        325 IGRNELIGRILLAGKNGS  342 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~~  342 (475)
                      .+++++||++.+++.+..
T Consensus        73 ~~~~~~iG~~~i~l~~l~   90 (125)
T cd04021          73 LKADVLLGEASLDLSDIL   90 (125)
T ss_pred             CCCCcEEEEEEEEHHHhH
Confidence            999999999999875543

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>KOG0905|consensus

Probab=99.33  E-value=1.5e-12  Score=136.81  Aligned_cols=126  Identities=38%  Similarity=0.619  Sum_probs=113.2

Q ss_pred             CCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeec
Q psy15955         97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEG  174 (475)
Q Consensus        97 ~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~  174 (475)
                      .+.+..|+|.++++|  ..++|.|.|.-+++|+-..-+..+||||+.++.|+..  .+.||+|+++|.||.|||...+.+
T Consensus      1507 ~p~~iggqV~LsIsY--~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g 1584 (1639)
T KOG0905|consen 1507 NPGEIGGQVKLSISY--NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDG 1584 (1639)
T ss_pred             CccccCceEEEEEEE--cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecC
Confidence            445667899999999  5999999999999997666567899999999998753  367999999999999999999998


Q ss_pred             ccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955        175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       175 ~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      +|.+.+..+.|+++||..+....+.++|.+.+||.++...+....||.|.
T Consensus      1585 ~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1585 FPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             Cchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence            99999988999999999998888999999999999999988888999984

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.30  E-value=2.1e-11  Score=97.50  Aligned_cols=96  Identities=48%  Similarity=0.784  Sum_probs=80.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|.|++|++|......+..+|||++++.+.+....+|+++.++.||.||++|.|.   ........|.|+|||.+..+.
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~---~~~~~~~~l~i~v~~~~~~~~   78 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE---VPPPELAELEIEVYDKDRFGR   78 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEE---ecCcccCEEEEEEEecCCccC
Confidence            67999999999988766789999999996433246799999999999999999998   333226789999999998777


Q ss_pred             CccccceeeccccccCCCC
Q psy15955        198 DDSIGEVFLPLCQVDLSEK  216 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~  216 (475)
                      +.++|.+.+++.++..+..
T Consensus        79 ~~~~G~~~~~l~~~~~~~~   97 (101)
T smart00239       79 DDFIGQVTIPLSDLLLGGR   97 (101)
T ss_pred             CceeEEEEEEHHHcccCcc
Confidence            8999999999999866544

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1011|consensus

Probab=99.29  E-value=4.2e-12  Score=125.99  Aligned_cols=116  Identities=28%  Similarity=0.509  Sum_probs=94.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      ...+.++|++|++|..+|..|++||||.+.+   ++.+.+|+++...+||+|||.|.|+   ... ....+++.|||.|.
T Consensus       294 sakitltvlcaqgl~akdktg~sdpyvt~qv---~ktkrrtrti~~~lnpvw~ekfhfe---chn-stdrikvrvwded~  366 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV---GKTKRRTRTIHQELNPVWNEKFHFE---CHN-STDRIKVRVWDEDN  366 (1283)
T ss_pred             ceeeEEeeeecccceecccCCCCCCcEEEee---cccchhhHhhhhccchhhhhheeee---ecC-CCceeEEEEecCcc
Confidence            4568999999999999999999999999999   5667899999999999999999998   222 35689999999884


Q ss_pred             C-----------CCCccccceeeccccccCCCCcceeeccCCCCC--Ccccceeeeee
Q psy15955        195 F-----------SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK--DKCGELLTSLC  239 (475)
Q Consensus       195 ~-----------~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~G~l~l~l~  239 (475)
                      .           ..|||+|+..|.+..+  ++....||.|.....  ..+|-|.+.+.
T Consensus       367 dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis  422 (1283)
T KOG1011|consen  367 DLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS  422 (1283)
T ss_pred             cHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence            2           4689999999999887  445678999976543  35676665554

>cd00030 C2 C2 domain

Probab=99.28  E-value=2.5e-11  Score=96.81  Aligned_cols=101  Identities=47%  Similarity=0.757  Sum_probs=84.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      |.|.|++|++|......+.++|||.+.+.+  ...++|+++.++.||.|++.|.|. ++.  .....|.|+||+.+..+.
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~-~~~--~~~~~l~i~v~~~~~~~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFP-VLD--PESDTLTVEVWDKDRFSK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEE-ccC--CCCCEEEEEEEecCCCCC
Confidence            468999999999877778899999999953  356799999999999999999998 332  135689999999998877


Q ss_pred             Cccccceeecccccc-CCCCcceeecc
Q psy15955        198 DDSIGEVFLPLCQVD-LSEKPTFWKAL  223 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~-~~~~~~~~~~L  223 (475)
                      +.+||.+.+++.++. .......|++|
T Consensus        76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          76 DDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             CceeEEEEEeHHHhhhcCCcCcceecC
Confidence            899999999999998 66666778764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1326|consensus

Probab=99.28  E-value=1.3e-12  Score=135.84  Aligned_cols=90  Identities=31%  Similarity=0.446  Sum_probs=73.8

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI  325 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~  325 (475)
                      .++|.+.+|.+|.+.|.+|.+||||++.+.   +....-+...+.+++||+|.+.|++.+....  ...+++.|||+|..
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~--ek~l~v~vyd~D~~  688 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPF--EKDLIVEVYDHDLE  688 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccch--hhcceeEEEEeecc
Confidence            367999999999999999999999999762   2222346778889999999999888754332  34699999999999


Q ss_pred             CCCeeeEEEEEcCcC
Q psy15955        326 GRNELIGRILLAGKN  340 (475)
Q Consensus       326 ~~d~~lG~~~i~l~~  340 (475)
                      +.|+.||+..+++++
T Consensus       689 ~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  689 AQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccchhhceehhhhh
Confidence            999999999998754

>KOG1328|consensus

Probab=99.27  E-value=3.4e-12  Score=128.24  Aligned_cols=110  Identities=35%  Similarity=0.553  Sum_probs=97.6

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC----CceEEeeeecCCCCceeeeeEEeecccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK----KHRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      -|.+.+++.|......|.|.|+.|+++.+.|.+|.+||||+|.+.|.-    ....+|+|+.+|+||+|+|.|+|. ||.
T Consensus       933 fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~ 1011 (1103)
T KOG1328|consen  933 FGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPP 1011 (1103)
T ss_pred             CCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCc
Confidence            488999999999999999999999999999999999999999997642    124689999999999999999999 666


Q ss_pred             cccc--cceEEEEEEeeCCCCCCccccceeecccccc
Q psy15955        178 QKLQ--SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD  212 (475)
Q Consensus       178 ~~~~--~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~  212 (475)
                      +...  ..+|.|+|.|+|-...+||-|++.+-|.++.
T Consensus      1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence            5443  5789999999999999999999999998884

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.25  E-value=2.4e-11  Score=99.56  Aligned_cols=73  Identities=25%  Similarity=0.341  Sum_probs=60.3

Q ss_pred             cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955        262 INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       262 ~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  341 (475)
                      .+|.+||||++++.  ++  ..++|++++++.||.|||.|.|.+...  ....|.|.|||++.. ++++||.+.+++.+.
T Consensus         9 ~~G~~dPYv~v~v~--~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l   81 (111)
T cd04052           9 KTGLLSPYAELYLN--GK--LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDL   81 (111)
T ss_pred             cCCCCCceEEEEEC--CE--EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence            56889999999872  22  346888989999999999999998632  345699999999998 899999999988654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG0905|consensus

Probab=99.23  E-value=8.6e-12  Score=131.17  Aligned_cols=123  Identities=27%  Similarity=0.439  Sum_probs=107.3

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ec
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VP  306 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~  306 (475)
                      ++..|+|.+++.|.  ++.|.|.|..+++|+....+...||||+.|+.++.++..++||+++++|.||.|||...+. ++
T Consensus      1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred             cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence            45567999999997  8999999999999987777778999999999999998899999999999999999999998 88


Q ss_pred             ccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955        307 WEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       307 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      .+.+.++.|+++||..+....+.+||.+.|+|....-..+...|+.
T Consensus      1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYN 1632 (1639)
T ss_pred             hhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceee
Confidence            8888889999999999999889999999999866554444444443

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.22  E-value=1.1e-10  Score=93.32  Aligned_cols=93  Identities=44%  Similarity=0.658  Sum_probs=77.2

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      +.|.|++|++|......+..+|||++++...+  ...++|+++.++.||.||++|.|.+....  ...|.|+|||.+..+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~   77 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG   77 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc
Confidence            67899999999888766778999999886443  34578999998899999999999987543  457999999999887


Q ss_pred             CCeeeEEEEEcCcCCCC
Q psy15955        327 RNELIGRILLAGKNGSG  343 (475)
Q Consensus       327 ~d~~lG~~~i~l~~~~~  343 (475)
                      ++.++|.+.+++.+...
T Consensus        78 ~~~~~G~~~~~l~~~~~   94 (101)
T smart00239       78 RDDFIGQVTIPLSDLLL   94 (101)
T ss_pred             CCceeEEEEEEHHHccc
Confidence            89999999998765544

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02270 phospholipase D alpha

Probab=99.19  E-value=1.8e-10  Score=120.53  Aligned_cols=148  Identities=18%  Similarity=0.267  Sum_probs=113.3

Q ss_pred             CCCEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEeCCCCceEEeeeecCC-CCceeeeeEEeec
Q psy15955        114 DNSTLILRVISAKELPAKD------------------MSGTSDPYVKVALLPDKKHRLETKIKRRT-LNPRWNETLYFEG  174 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~~kT~v~~~~-~nP~w~e~f~f~~  174 (475)
                      .+|.|.|+|++|++|+..+                  ..+.+||||.|.+  ++....||+++.+. .||+|+|+|... 
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~-   82 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIY-   82 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEe-
Confidence            4788999999999998631                  1246799999999  46667899999885 699999999855 


Q ss_pred             ccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcc---cceeeeeeecCCceeEEEEE
Q psy15955        175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKC---GELLTSLCYHPSNSVLTITL  251 (475)
Q Consensus       175 ~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~---G~l~l~l~~~~~~~~L~v~v  251 (475)
                        +.... ..+.|.|.|.|.++. .+||.+.+|+.++..+.....|+++....+++.   .+|++++.|.+....-    
T Consensus        83 --~ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~----  154 (808)
T PLN02270         83 --CAHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDR----  154 (808)
T ss_pred             --eccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCc----
Confidence              55543 679999999998875 699999999999999988999999988776543   4899999998743221    


Q ss_pred             EeeccCcccccCCCccceEEE
Q psy15955        252 LKARNLKAKDINGKSDPYVKV  272 (475)
Q Consensus       252 ~~a~~L~~~~~~~~~dpyv~v  272 (475)
                      .-.+++...+..|....|...
T Consensus       155 ~~~~gv~~~~~~gvp~t~f~~  175 (808)
T PLN02270        155 NWGRGIRSAKFPGVPYTFFSQ  175 (808)
T ss_pred             chhcccCCcCcCCCCCccccc
Confidence            123444444555666666554

>KOG2059|consensus

Probab=99.15  E-value=3.1e-11  Score=121.60  Aligned_cols=143  Identities=25%  Similarity=0.451  Sum_probs=109.9

Q ss_pred             CCCcccEEEEEEEEe--CCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CCceEEeeeecCCCCceeeeeEEeec
Q psy15955         98 PSENVGQIHFSLEYD--FDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD-KKHRLETKIKRRTLNPRWNETLYFEG  174 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~--~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~kT~v~~~~~nP~w~e~f~f~~  174 (475)
                      ++++.|.|++.++..  .....+...++.++++.+.+. +.+|||++|..... .....+|++++++.+|.|+|.|.|. 
T Consensus       111 dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-  188 (800)
T KOG2059|consen  111 DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-  188 (800)
T ss_pred             ChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeeeccCcchhhheeee-
Confidence            457889999988865  346678888888888877764 45999999998533 2233689999999999999999998 


Q ss_pred             cccc-------------ccccceEEEEEEe-eCCCCCCccccceeeccccccCCCCcceeeccCCCCC-------Ccccc
Q psy15955        175 FPIQ-------------KLQSRVLHLHVFD-YDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK-------DKCGE  233 (475)
Q Consensus       175 ~~~~-------------~~~~~~L~~~V~d-~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~-------~~~G~  233 (475)
                      +...             +.....|++++|+ ++....++|+|++.+|+..+.....+..||.|.+...       +..|.
T Consensus       189 ~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGs  268 (800)
T KOG2059|consen  189 VTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGS  268 (800)
T ss_pred             eccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccc
Confidence            3322             0013468899998 5666669999999999999987777889999987542       35688


Q ss_pred             eeeeeeecC
Q psy15955        234 LLTSLCYHP  242 (475)
Q Consensus       234 l~l~l~~~~  242 (475)
                      +.+.+.|..
T Consensus       269 lrl~v~y~~  277 (800)
T KOG2059|consen  269 LRLNVTYTE  277 (800)
T ss_pred             eeeeEEeee
Confidence            999988763

>KOG1328|consensus

Probab=99.09  E-value=5.2e-11  Score=119.89  Aligned_cols=111  Identities=32%  Similarity=0.484  Sum_probs=97.2

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCce--eeeeeecccccCCCCCeecceEEEeecccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK--RIEKRKTQIFKCNLNPVFNESFSFNVPWEK  309 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~  309 (475)
                      |.+.+.+.|......|.|.|+.|+++.+.|.+|.+||||.|.+.+...  ....++|.|+++|+||+|+|+|+|.|+++.
T Consensus       934 g~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~ 1013 (1103)
T KOG1328|consen  934 GVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEP 1013 (1103)
T ss_pred             CceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccc
Confidence            888899999989999999999999999999999999999999865432  234679999999999999999999999776


Q ss_pred             cc--cceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        310 IR--ECSLNVMVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       310 l~--~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      ..  ...|.|+|+|+|-+..++|-|++.+.|.+..
T Consensus      1014 c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1014 CSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence            44  4679999999999999999999999775443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.09  E-value=1.8e-10  Score=131.56  Aligned_cols=102  Identities=17%  Similarity=0.252  Sum_probs=78.4

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      -|.|.|+|++|.||.  +..+.+||||++.+..    ..++||++++++.||+|||.|.|.+..... +..|+|+|||+|
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~-~~~l~iev~d~d 2051 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWAFDSPPK-GQKLHISCKSKN 2051 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECC----CCcccccccCCCCCCCcccceeeeecCCCC-CCceEEEEEecC
Confidence            578999999999998  5578899999998732    234589999999999999999977653332 346999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        324 NIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      .+++| .||.+.|++.+.........|+.+
T Consensus      2052 ~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L 2080 (2102)
T PLN03200       2052 TFGKS-SLGKVTIQIDRVVMEGTYSGEYSL 2080 (2102)
T ss_pred             ccCCC-CCceEEEEHHHHhcCceeeeeeec
Confidence            99655 999999988655443333334433

>KOG1013|consensus

Probab=99.07  E-value=2.5e-10  Score=105.85  Aligned_cols=109  Identities=35%  Similarity=0.538  Sum_probs=97.7

Q ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeeccc
Q psy15955         99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFP  176 (475)
Q Consensus        99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~  176 (475)
                      .+.+|+|.++++|......|.|.+++|..|..+|.+|-+||||+.++.++.+.  +.||.+.+++++|+|+++|.|. ++
T Consensus       216 ~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~  294 (362)
T KOG1013|consen  216 DEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IG  294 (362)
T ss_pred             hhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CC
Confidence            36789999999999999999999999999999999999999999999766433  4689999999999999999999 88


Q ss_pred             ccccccceEEEEEEeeCCCCCCccccceeecc
Q psy15955        177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL  208 (475)
Q Consensus       177 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l  208 (475)
                      ..++....+.|.|||++..+..+++|....-+
T Consensus       295 pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  295 PGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             ccchhcceEEEeecccCCCcCccCCCcccccc
Confidence            88888889999999999887889999866554

>cd00030 C2 C2 domain

Probab=99.07  E-value=9.5e-10  Score=87.49  Aligned_cols=90  Identities=43%  Similarity=0.603  Sum_probs=74.8

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      |.|.|++|++|.........+|||.+.+..    ...++|.+..++.||.|++.|.|.+...  ....|.|+||+.+..+
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~   74 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS   74 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC
Confidence            468999999998877777899999998743    2456899999999999999999998752  2457999999999888


Q ss_pred             CCeeeEEEEEcCcCCC
Q psy15955        327 RNELIGRILLAGKNGS  342 (475)
Q Consensus       327 ~d~~lG~~~i~l~~~~  342 (475)
                      ++.+||.+.+++.+..
T Consensus        75 ~~~~ig~~~~~l~~l~   90 (102)
T cd00030          75 KDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCceeEEEEEeHHHhh
Confidence            8899999999875544

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011|consensus

Probab=99.06  E-value=2.1e-10  Score=114.19  Aligned_cols=101  Identities=36%  Similarity=0.546  Sum_probs=84.2

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      ..+.++|+.|++|.++|..|++||||.+.+     ...+++|+++...+||+|||.|.|.+....   ..|++.|||.|.
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv-----~ktkrrtrti~~~lnpvw~ekfhfechnst---drikvrvwded~  366 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV-----GKTKRRTRTIHQELNPVWNEKFHFECHNST---DRIKVRVWDEDN  366 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEee-----cccchhhHhhhhccchhhhhheeeeecCCC---ceeEEEEecCcc
Confidence            468899999999999999999999999865     235678999999999999999999987543   369999999885


Q ss_pred             C-----------CCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955        325 I-----------GRNELIGRILLAGKNGSGASETKHWQDMIT  355 (475)
Q Consensus       325 ~-----------~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~  355 (475)
                      .           ..|+|+|+..|.+..+++  +++.|+.+..
T Consensus       367 dlksklrqkl~resddflgqtvievrtlsg--emdvwynlek  406 (1283)
T KOG1011|consen  367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEK  406 (1283)
T ss_pred             cHHHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhh
Confidence            2           368999999998766654  6778887754

>PLN02223 phosphoinositide phospholipase C

Probab=99.01  E-value=1.5e-09  Score=109.28  Aligned_cols=97  Identities=15%  Similarity=0.250  Sum_probs=76.3

Q ss_pred             eeEEEEEEeeccCccc-----ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955        245 SVLTITLLKARNLKAK-----DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV  319 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~-----~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V  319 (475)
                      ..|.|+|+.|++++..     +.....||||+|.+..-......++|.+..++.||+|||+|.|.|...++  +.|.|.|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V  486 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV  486 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence            5699999999987521     22345799999999643222345677787889999999999999987776  4799999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      +|+|..++++|+|+..+|+..+-.
T Consensus       487 ~D~D~~~~ddfiGQ~~LPv~~Lr~  510 (537)
T PLN02223        487 YDYEVSTADAFCGQTCLPVSELIE  510 (537)
T ss_pred             EecCCCCCCcEEEEEecchHHhcC
Confidence            999998889999999999865443

>PLN02270 phospholipase D alpha

Probab=98.96  E-value=2.1e-09  Score=112.61  Aligned_cols=128  Identities=19%  Similarity=0.290  Sum_probs=99.3

Q ss_pred             eeEEEEEEeeccCcccc------------------cCCCccceEEEEEEeCceeeeeeecccccCC-CCCeecceEEEee
Q psy15955        245 SVLTITLLKARNLKAKD------------------INGKSDPYVKVWLQFGEKRIEKRKTQIFKCN-LNPVFNESFSFNV  305 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~v  305 (475)
                      |.|.|+|++|++|+..+                  ..+++||||.|.+.    ...+-||+++.+. .||.|+|+|.+.+
T Consensus         8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEee
Confidence            68999999999998631                  12468999999873    2345699999875 6999999998888


Q ss_pred             cccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCCcccceeecc
Q psy15955        306 PWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSV  380 (475)
Q Consensus       306 ~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~  380 (475)
                      ....   ..|.|+|.|.+.+|. .+||.+.||..+..+++..+.|.++++..++....-..|.-+-.|..+.+..
T Consensus        84 ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~  154 (808)
T PLN02270         84 AHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDR  154 (808)
T ss_pred             ccCc---ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence            6443   469999999998875 6999999999999999999999999988776665544555444555544443

>KOG1327|consensus

Probab=98.95  E-value=2e-09  Score=107.38  Aligned_cols=191  Identities=20%  Similarity=0.312  Sum_probs=126.9

Q ss_pred             ccccccccchhhHHHHHhhhhhhhcccCcc-ccCCCCCCCCCCCCCCCCCcccCCCCCCcccccccccCCCCCCCCcccc
Q psy15955          3 DGFKNHAISKLTLSRFLSQSVAQLETAGTT-VDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAFM   81 (475)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~~~~~~l   81 (475)
                      +..+++.|...+||.|++++.+..+=--.- +....++-+..              ..              -....||+
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~--------------~~--------------~l~~~dfl   92 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR--------------TP--------------DLSSADFL   92 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc--------------cC--------------Ccchhccc
Confidence            457899999999999999999987722211 11111111000              00              01122333


Q ss_pred             cccccceeeeEeC---------CCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeC-CCCc
Q psy15955         82 QSRSVSLVDMYID---------NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP-DKKH  151 (475)
Q Consensus        82 ~~~~~s~~~~~~~---------~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~  151 (475)
                      +...+.+.++...         ........|.|.+.++............++|++|..+|.++++|||..++-.. ++..
T Consensus        93 g~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~  172 (529)
T KOG1327|consen   93 GTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGST  172 (529)
T ss_pred             ceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCce
Confidence            3333333222111         01133456899999998877777777778999999999999999999998643 2222


Q ss_pred             --eEEeeeecCCCCceeeeeEEeecccccccc----cceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        152 --RLETKIKRRTLNPRWNETLYFEGFPIQKLQ----SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       152 --~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~----~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                        .++|++++++++|.|.+.   . ++...++    ...+.+.+||++..+++++||++..++.++........|....+
T Consensus       173 ~~~~~tEv~~n~l~p~w~~~---~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~~~~~~~~~~~~~  248 (529)
T KOG1327|consen  173 QMLYRTEVVKNTLNPQWAPF---S-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQEPGSPNQIMLINP  248 (529)
T ss_pred             eeccccceeccCCCCccccc---c-cchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcccCCcccccccCh
Confidence              469999999999999853   2 4455543    36788999999999999999999999999975333334444433

>KOG1031|consensus

Probab=98.93  E-value=1.5e-09  Score=106.91  Aligned_cols=121  Identities=25%  Similarity=0.441  Sum_probs=102.0

Q ss_pred             CCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeee-EEeecccccccccceEEEEEEee
Q psy15955        115 NSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNET-LYFEGFPIQKLQSRVLHLHVFDY  192 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~-f~f~~~~~~~~~~~~L~~~V~d~  192 (475)
                      .+.|.|+|..||+||-+|.. ...|.||+|.+   ....+||.|..+++||.||.. |.|+ +.-.+++...|+|.+.|+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~---~n~t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~   77 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKF---ANTTFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDH   77 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEe---cccceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecc
Confidence            35789999999999998865 46799999999   556789999999999999954 8888 777888899999999999


Q ss_pred             CCCCCCccccceeeccccccCCC----------CcceeeccCCCCCCcccceeeeee
Q psy15955        193 DRFSRDDSIGEVFLPLCQVDLSE----------KPTFWKALKPPAKDKCGELLTSLC  239 (475)
Q Consensus       193 d~~~~~~~iG~~~i~l~~l~~~~----------~~~~~~~L~~~~~~~~G~l~l~l~  239 (475)
                      |..+.+|-||.+.|.+.-|....          -...|+++...-...+|+|.+-+.
T Consensus        78 dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   78 DTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             cccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence            99999999999999988874322          125799998877788899887664

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.89  E-value=7.1e-09  Score=106.59  Aligned_cols=97  Identities=19%  Similarity=0.204  Sum_probs=77.2

Q ss_pred             ceeEEEEEEeeccCccc------ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEE
Q psy15955        244 NSVLTITLLKARNLKAK------DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNV  317 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i  317 (475)
                      ...|.|+|+.+.+++..      +.....||||+|.+..-.....+++|++..++.||.|||+|.|.+..++|  +.|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf  545 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRV  545 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEE
Confidence            35799999999987421      22335799999999643333345688888899999999999999887776  57999


Q ss_pred             EEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        318 MVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       318 ~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      .|+|+|..++++|+|+..||+..+-
T Consensus       546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr  570 (598)
T PLN02230        546 EVHEHDINEKDDFGGQTCLPVSEIR  570 (598)
T ss_pred             EEEECCCCCCCCEEEEEEcchHHhh
Confidence            9999999889999999999986544

>PLN02952 phosphoinositide phospholipase C

Probab=98.87  E-value=1.1e-08  Score=105.39  Aligned_cols=98  Identities=21%  Similarity=0.317  Sum_probs=77.2

Q ss_pred             ceeEEEEEEeeccCccc------ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEE
Q psy15955        244 NSVLTITLLKARNLKAK------DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNV  317 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~------~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i  317 (475)
                      ...|.|.|+.|++++..      +.....||||+|.+..-.....+++|+++.++.||.||++|.|.+...++  +.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf  546 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRI  546 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEE
Confidence            35799999999987532      11233599999998643333356689999999999999999999887665  47999


Q ss_pred             EEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        318 MVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       318 ~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      .|||+|..++++++|++.+|+..+..
T Consensus       547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~  572 (599)
T PLN02952        547 EVREYDMSEKDDFGGQTCLPVSELRP  572 (599)
T ss_pred             EEEecCCCCCCCeEEEEEcchhHhcC
Confidence            99999998899999999999865543

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.83  E-value=1.7e-08  Score=103.75  Aligned_cols=97  Identities=20%  Similarity=0.256  Sum_probs=76.0

Q ss_pred             ceeEEEEEEeeccCcc--c----ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEE
Q psy15955        244 NSVLTITLLKARNLKA--K----DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNV  317 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~--~----~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i  317 (475)
                      ...|.|+|+.+.+++.  .    +.....||||+|.+........+++|+++.++.||.|||+|.|.+...+|  +.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf  528 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRL  528 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEE
Confidence            3579999999987531  1    12345799999998633222345689999998999999999999877776  57999


Q ss_pred             EEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        318 MVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       318 ~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      .|+|+|..+.++|+|+..+|+..+-
T Consensus       529 ~V~d~D~~~~ddfigq~~lPv~~Lr  553 (581)
T PLN02222        529 EVHEYDMSEKDDFGGQTCLPVWELS  553 (581)
T ss_pred             EEEECCCCCCCcEEEEEEcchhhhh
Confidence            9999998888999999999986544

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.82  E-value=1.5e-08  Score=79.36  Aligned_cols=84  Identities=24%  Similarity=0.446  Sum_probs=68.0

Q ss_pred             EEEEEEEeecCCCCC---CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        118 LILRVISAKELPAKD---MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       118 L~v~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      |.|+|.+|+++...+   ..+.+||||.|.+  ++..+.||++   +.||.|||+|.|.   ++.  ...+.+.|||...
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~kaRTr~---srnd~WnE~F~i~---Vdk--~nEiel~VyDk~~   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVERARTKP---SRNDRWNEDFEIP---VEK--NNEEEVIVYDKGG   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEEEEeccC---CCCCcccceEEEE---ecC--CcEEEEEEEeCCC
Confidence            578999999999887   5678999999999  4555778887   4799999999988   443  5689999999864


Q ss_pred             CCCCccccceeecccccc
Q psy15955        195 FSRDDSIGEVFLPLCQVD  212 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~  212 (475)
                       ...-.||..-+.+++|.
T Consensus        71 -~~~~Pi~llW~~~sdi~   87 (109)
T cd08689          71 -DQPVPVGLLWLRLSDIA   87 (109)
T ss_pred             -CeecceeeehhhHHHHH
Confidence             34567898888888874

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y

Probab=98.81  E-value=8.7e-10  Score=88.85  Aligned_cols=67  Identities=19%  Similarity=0.169  Sum_probs=51.7

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCC---CcccccccccCCCCCCCCcccc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSS---TPLHNKAVANVKAGEHPSSAFM   81 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~n~~~g~~~~~~~l   81 (475)
                      .-.++++.+.|+||+|+|+||+|++|...|...+...+..=.+..   ....++|..||+||||+||++|
T Consensus        46 ~~~~n~~~l~RvYP~g~R~dSSNy~P~~~W~~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVLKP~~l  115 (115)
T smart00149       46 FVRYNQRQLSRVYPKGTRVDSSNYNPQVFWNAGCQMVALNFQTPDKPMQLNQGMFRANGGCGYVLKPDFL  115 (115)
T ss_pred             HHHhccccceEECcCCCcCCCCCCCCHHHHcCCceEeEeecCCCChHHHHHhhHhhcCCCCCeEeCCCCC
Confidence            346788999999999999999999998776555544444433322   2344889999999999999986

Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.

>KOG0169|consensus

Probab=98.77  E-value=2e-08  Score=103.33  Aligned_cols=95  Identities=23%  Similarity=0.380  Sum_probs=76.8

Q ss_pred             eEEEEEEeeccCcccc----cCCCccceEEEEEEeCceeeeeeecc-cccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955        246 VLTITLLKARNLKAKD----INGKSDPYVKVWLQFGEKRIEKRKTQ-IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~----~~~~~dpyv~v~l~~~~~~~~~~~T~-~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      .|.|.|+.+.++...-    ....+||||.|.+..-......++|+ +..++.||.|+|+|+|.+..++|  +-|.|.|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~  694 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH  694 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence            6999999999775432    22457999999875433334567888 55678999999999999988887  47999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |+|..++|+|+|++++|+..+.
T Consensus       695 d~d~~~~ddF~GQ~tlP~~~L~  716 (746)
T KOG0169|consen  695 DYDYIGKDDFIGQTTLPVSELR  716 (746)
T ss_pred             ecCCCCcccccceeeccHHHhh
Confidence            9999999999999999986544

>KOG1031|consensus

Probab=98.77  E-value=1.1e-08  Score=100.87  Aligned_cols=115  Identities=22%  Similarity=0.339  Sum_probs=92.6

Q ss_pred             eeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeec-ceEEEeecccccccceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFN-ESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~-e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      +.|.|.|..||+|+-+|.. ...|.||++.+     ....++|.+..+++||.|| +-|.|.|...+|++.+|+|++.|+
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~-----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~   77 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF-----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDH   77 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEe-----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecc
Confidence            5788999999999999854 46799999987     3356799999999999999 579999999999999999999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        323 DNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      |..+.++-||.+.|++..++-.+    -.+.....++.++.|++++
T Consensus        78 dtysandaigkv~i~idpl~~e~----aaqavhgkgtvisgw~pif  119 (1169)
T KOG1031|consen   78 DTYSANDAIGKVNIDIDPLCLEE----AAQAVHGKGTVISGWFPIF  119 (1169)
T ss_pred             cccccccccceeeeccChHHHHh----HHhhhcCCceEEeeeeecc
Confidence            99999999999999876543211    1112223467778888876

>KOG2060|consensus

Probab=98.74  E-value=1.2e-08  Score=96.51  Aligned_cols=122  Identities=30%  Similarity=0.429  Sum_probs=100.2

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeeccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDM-SGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFP  176 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~  176 (475)
                      ...|.|++.+-  ...+.+.|.|++|++|..+.. ...++|||+|++++.+.+  +.+|+...+|++|-|-+...|.   
T Consensus       255 P~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~---  329 (405)
T KOG2060|consen  255 PNMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD---  329 (405)
T ss_pred             cccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc---
Confidence            34566665554  378899999999999997653 347899999999877654  4589999999999999988886   


Q ss_pred             ccccccceEEEEEE-eeCCCCCCccccceeeccccccCCC-CcceeeccCCCC
Q psy15955        177 IQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSE-KPTFWKALKPPA  227 (475)
Q Consensus       177 ~~~~~~~~L~~~V~-d~d~~~~~~~iG~~~i~l~~l~~~~-~~~~~~~L~~~~  227 (475)
                       +.+....|.+.|| |+.++..+.|+|.+.+-+.+|..+. ....||+|.+..
T Consensus       330 -~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  330 -QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             -cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence             3445678999999 7888888999999999999998887 668999998754

>PLN02228 Phosphoinositide phospholipase C

Probab=98.74  E-value=5e-08  Score=99.98  Aligned_cols=97  Identities=19%  Similarity=0.246  Sum_probs=76.5

Q ss_pred             ceeEEEEEEeeccCcc---c---ccCCCccceEEEEEEeCceeeeeeecccccCCCCCee-cceEEEeecccccccceEE
Q psy15955        244 NSVLTITLLKARNLKA---K---DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVF-NESFSFNVPWEKIRECSLN  316 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~---~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~l~~~~l~  316 (475)
                      ...|.|+|+.|++|+.   .   +.....||||+|.+........+++|++++++.||.| +++|.|.+...+|  +.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lR  507 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLW  507 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEE
Confidence            3479999999998732   1   1223479999999864333335578999988899999 9999999887776  4799


Q ss_pred             EEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        317 VMVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       317 i~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |.|+|+|..+.++++|+..||+..+-
T Consensus       508 f~V~D~d~~~~d~figq~~lPv~~Lr  533 (567)
T PLN02228        508 FKVQDYDNDTQNDFAGQTCLPLPELK  533 (567)
T ss_pred             EEEEeCCCCCCCCEEEEEEcchhHhh
Confidence            99999998888999999999986543

>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3

Probab=98.67  E-value=1.2e-09  Score=88.83  Aligned_cols=70  Identities=13%  Similarity=0.057  Sum_probs=41.2

Q ss_pred             hhHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCCC---cccccccccCCCCCCCCccccc
Q psy15955         13 LTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSST---PLHNKAVANVKAGEHPSSAFMQ   82 (475)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~n~~~g~~~~~~~l~   82 (475)
                      ...-.++++.+.|+||+|+++||+|++|-..+...+...+..=.+...   ...++|..||+||||+||++|+
T Consensus        46 ~~l~~~~~~~l~RvyP~~~R~~SsN~~P~~~W~~G~Q~vALN~Qt~d~~m~ln~g~F~~NG~cGYVLKP~~lR  118 (118)
T PF00387_consen   46 SELVEHNKRHLVRVYPSGTRIDSSNFNPLPFWNCGCQMVALNFQTPDEPMQLNQGMFRQNGGCGYVLKPEYLR  118 (118)
T ss_dssp             HHHHHHHHHSEEEEE--TT-TT-----THHHHTTT-SEEEB-TTS-SHHHHHHHHHTTTGGG-SEEE--GGGT
T ss_pred             chHHHhcccceEEecCCccccCCCCCChHHHhhccCccceeeccCCChhHHHHHhhhccCCCCCeEeCchhhC
Confidence            334567899999999999999999999977755555554444333322   2347899999999999999985

1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....

>PLN02352 phospholipase D epsilon

Probab=98.67  E-value=1.7e-07  Score=98.43  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=98.3

Q ss_pred             CCCEEEEEEEEeecCCCC----CCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEE
Q psy15955        114 DNSTLILRVISAKELPAK----DMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLH  188 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~----~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~  188 (475)
                      -+|+|.++|++|+-+...    +.. ...||||.|.+  ++....||   .+..||+|+|+|...   +.......+.|.
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~---~ah~~~~~~~f~   79 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQIL---CAHPLDSTITIT   79 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEE---eeeecCCcEEEE
Confidence            467899999999843322    111 12399999999  45566788   666799999999855   655544579999


Q ss_pred             EEeeCCCCCCccccceeeccccccCCCC-cceeeccCCCCCCcc--cceeeeeeecCCceeEEEEEEeeccCcccccCCC
Q psy15955        189 VFDYDRFSRDDSIGEVFLPLCQVDLSEK-PTFWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGK  265 (475)
Q Consensus       189 V~d~d~~~~~~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~--G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~  265 (475)
                      |.|     ...+||.+.+|+.++..+.. .+.|+++....+++.  .+|++++.|.|....-.    -.+++...+..|.
T Consensus        80 vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~gv  150 (758)
T PLN02352         80 LKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEPT----WCKILENGSFQGL  150 (758)
T ss_pred             Eec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCcc----hhhcccCCCcCCc
Confidence            988     25799999999999988866 789999988776543  58999999987533211    2233333344454


Q ss_pred             ccceEE
Q psy15955        266 SDPYVK  271 (475)
Q Consensus       266 ~dpyv~  271 (475)
                      ...|..
T Consensus       151 p~~~f~  156 (758)
T PLN02352        151 RNATFP  156 (758)
T ss_pred             CCcccc
Confidence            444444

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.65  E-value=3.4e-08  Score=73.77  Aligned_cols=101  Identities=23%  Similarity=0.330  Sum_probs=78.3

Q ss_pred             EEEEEeeccCcccccCC-CccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        248 TITLLKARNLKAKDING-KSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       248 ~v~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      -++++.|+||......| ....|++--+.-.  +....||++.+.+.||+|.|+|.|.+...+|.+..|.|.|+.  ...
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~   77 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP   77 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence            46889999997655433 3455777554322  223568999999999999999999999999999999999998  556


Q ss_pred             CCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        327 RNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       327 ~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      +...||.|.+.+.+. +.++..||.++
T Consensus        78 RKe~iG~~sL~l~s~-geeE~~HW~e~  103 (103)
T cd08684          78 RKRTIGECSLSLRTL-STQETDHWLEI  103 (103)
T ss_pred             ccceeeEEEeecccC-CHHHhhhhhcC
Confidence            789999999987554 45788899764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.57  E-value=5.1e-08  Score=72.84  Aligned_cols=100  Identities=23%  Similarity=0.346  Sum_probs=77.8

Q ss_pred             EEEEEEeecCCCCCCCC-CCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCC
Q psy15955        119 ILRVISAKELPAKDMSG-TSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR  197 (475)
Q Consensus       119 ~v~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~  197 (475)
                      -++|+.|++|......| .+.-|++--+.-.+...+||.+.+...||+|.|+|.|. +....+....|.|.|+.  ...+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~R   78 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPR   78 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCc
Confidence            47889999999766544 45567665543244456799999999999999999999 78888888899999998  4567


Q ss_pred             CccccceeeccccccCCCCcceeec
Q psy15955        198 DDSIGEVFLPLCQVDLSEKPTFWKA  222 (475)
Q Consensus       198 ~~~iG~~~i~l~~l~~~~~~~~~~~  222 (475)
                      .+.||.+.+.+.++-.. ...+|.+
T Consensus        79 Ke~iG~~sL~l~s~gee-E~~HW~e  102 (103)
T cd08684          79 KRTIGECSLSLRTLSTQ-ETDHWLE  102 (103)
T ss_pred             cceeeEEEeecccCCHH-Hhhhhhc
Confidence            88999999999888432 3356754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.50  E-value=1.6e-07  Score=75.78  Aligned_cols=94  Identities=20%  Similarity=0.304  Sum_probs=69.1

Q ss_pred             EEEEEEeeccCccccc-------------CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc------
Q psy15955        247 LTITLLKARNLKAKDI-------------NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW------  307 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~-------------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~------  307 (475)
                      |.|.|++|.+|+....             .-..++||++.+..-.+ .+.++|+++.++..|.|+.+++|.++.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~-~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPE-KELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCC-CceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence            4688899999875431             11258999998754222 245789999999999999999999861      


Q ss_pred             -------cccccceEEEEEEeccCC----------CCCeeeEEEEEcCcCC
Q psy15955        308 -------EKIRECSLNVMVMDFDNI----------GRNELIGRILLAGKNG  341 (475)
Q Consensus       308 -------~~l~~~~l~i~V~d~~~~----------~~d~~lG~~~i~l~~~  341 (475)
                             +-|....+.++||+....          .+|-+||.+.||+.++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~L  130 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDL  130 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHH
Confidence                   234457899999997642          3567899999998553

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1264|consensus

Probab=98.49  E-value=4.5e-07  Score=93.15  Aligned_cols=94  Identities=22%  Similarity=0.303  Sum_probs=74.9

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeec-ceEEEeecccccccceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFN-ESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~-e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      -.|.|.|+.||.|+... .+-+.|||.|.+-...-... .++|.++.+.+||+|| ++|+|.|..+++  +-|.|.|+|.
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~--A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF--AFLRFVVYEE 1141 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce--EEEEEEEecc
Confidence            36899999999998543 45567999999854332223 3456666789999999 999999987765  5799999999


Q ss_pred             cCCCCCeeeEEEEEcCcCC
Q psy15955        323 DNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~  341 (475)
                      |+++...|||+++.|+...
T Consensus      1142 Dmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred             cccCCcceeeeeecchhhh
Confidence            9999889999999988543

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.48  E-value=6.7e-07  Score=70.17  Aligned_cols=81  Identities=25%  Similarity=0.377  Sum_probs=61.0

Q ss_pred             EEEEEEeeccCcccc---cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        247 LTITLLKARNLKAKD---INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       247 L~v~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      |.|+|..++|+...+   ..+.+||||.+.+.  +  ..+.||++   +.||.|||+|.|+|..    ...+.|.|||..
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d--~~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk~   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--D--VERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDKG   69 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEEC--C--EEEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeCC
Confidence            578999999998877   67889999999763  2  23567876   5899999999999842    457999999975


Q ss_pred             CCCCCeeeEEEEEcCc
Q psy15955        324 NIGRNELIGRILLAGK  339 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~  339 (475)
                      . ...-.||..-+.+.
T Consensus        70 ~-~~~~Pi~llW~~~s   84 (109)
T cd08689          70 G-DQPVPVGLLWLRLS   84 (109)
T ss_pred             C-CeecceeeehhhHH
Confidence            3 23345677666443

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2060|consensus

Probab=98.39  E-value=7.6e-07  Score=84.43  Aligned_cols=113  Identities=23%  Similarity=0.357  Sum_probs=88.5

Q ss_pred             CceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE-
Q psy15955        243 SNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM-  320 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~-  320 (475)
                      ..+.+.|.|++|++|..+... ..++|||+||++..+..+.+.+|+...+|.+|.+.....|.-++.   ...|.++|| 
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~---~k~Lq~tv~g  343 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP---GKYLQGTVWG  343 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC---ccEEEEEEec
Confidence            467899999999999776532 368999999999988888889999999999999998888875543   457999999 


Q ss_pred             eccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH  371 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~  371 (475)
                      |+.++..+.|+|.+++-+.++.             ......+.||+|+...
T Consensus       344 dygRmd~k~fmg~aqi~l~eL~-------------ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  344 DYGRMDHKSFMGVAQIMLDELN-------------LSSSPVIGWYKLFGSS  381 (405)
T ss_pred             cccccchHHHhhHHHHHhhhhc-------------cccccceeeeeccCCc
Confidence            5667777889999988553322             2233567899988654

>PLN02352 phospholipase D epsilon

Probab=98.19  E-value=4.3e-06  Score=88.06  Aligned_cols=124  Identities=11%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             eeEEEEEEeeccCccc----c-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955        245 SVLTITLLKARNLKAK----D-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV  319 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~----~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V  319 (475)
                      |.|.++|++|+-+...    . .....||||.|.+.  +  ..+-||   .+..||.|+|+|.+.+....  +..+.|+|
T Consensus        10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~--~~v~rt---~~~~~p~w~e~f~i~~ah~~--~~~~~f~v   80 (758)
T PLN02352         10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--N--KKVAKT---SHEYDRVWNQTFQILCAHPL--DSTITITL   80 (758)
T ss_pred             cceEEEEEEeeehhhcccccccccCCCCceEEEEeC--C--cEEecC---CCCCCCccccceeEEeeeec--CCcEEEEE
Confidence            6788888888743221    1 11123999999773  2  234466   45669999999888876432  34699999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCCCCcc-cccccccccCCCcceeeeeccCCCCcccceeecccce
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGSGASE-TKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVS  383 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~~~~~-~~~w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~  383 (475)
                      .|     ...+||.+.||..+..++++ .+.|.++++..++.... ..|.-+-.|....+...+.
T Consensus        81 k~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~  139 (758)
T PLN02352         81 KT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWC  139 (758)
T ss_pred             ec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchh
Confidence            98     26899999999999888766 99999999887777655 5565555566655554333

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.11  E-value=3.5e-06  Score=68.20  Aligned_cols=105  Identities=24%  Similarity=0.313  Sum_probs=75.5

Q ss_pred             EEEEEEEeecCCCCC---------CC----CCCCcEEEEEEeC-CCCceEEeeeecCCCCceeeeeEEeecccc------
Q psy15955        118 LILRVISAKELPAKD---------MS----GTSDPYVKVALLP-DKKHRLETKIKRRTLNPRWNETLYFEGFPI------  177 (475)
Q Consensus       118 L~v~v~~a~~L~~~~---------~~----~~~dpyv~v~l~~-~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~------  177 (475)
                      |.|.|++|.+|....         +.    =--++||++.+.- .++...+|+++-+++.|.|+.+++|. .++      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEe-cccEEEcCC
Confidence            457888999988431         10    0247999999632 23456789999999999999999987 331      


Q ss_pred             -------cccccceEEEEEEeeCCC----------CCCccccceeeccccccCC-CCcceeecc
Q psy15955        178 -------QKLQSRVLHLHVFDYDRF----------SRDDSIGEVFLPLCQVDLS-EKPTFWKAL  223 (475)
Q Consensus       178 -------~~~~~~~L~~~V~d~d~~----------~~~~~iG~~~i~l~~l~~~-~~~~~~~~L  223 (475)
                             +.++...+.|+||+.+..          .+|-+||.+.||+.+|... .+.+.||++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                   123457799999987632          2456899999999998644 456789975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.74  E-value=2.6e-05  Score=81.60  Aligned_cols=92  Identities=17%  Similarity=0.289  Sum_probs=72.1

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      =.+...+++++|+    ++   ..|+|..+-..  +.+.+||.+.++|+||+||+...|. +....  ....+|.|||++
T Consensus        52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~--g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~--~~~~~~~~~~~~  119 (644)
T PLN02964         52 FSGIALLTLVGAE----MK---FKDKWLACVSF--GEQTFRTETSDSTDKPVWNSEKKLL-LEKNG--PHLARISVFETN  119 (644)
T ss_pred             ccCeEEEEeehhh----hc---cCCcEEEEEEe--cceeeeeccccccCCcccchhhceE-eccCC--cceEEEEEEecC
Confidence            4667888999887    33   25888655442  7788999999999999999998887 33333  335699999999


Q ss_pred             CCCCCccccceeeccccccCCCCc
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEKP  217 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~~  217 (475)
                      +++.++++|.+.++|.++...+..
T Consensus       120 ~~s~n~lv~~~e~~~t~f~~kqi~  143 (644)
T PLN02964        120 RLSKNTLVGYCELDLFDFVTQEPE  143 (644)
T ss_pred             CCCHHHhhhheeecHhhccHHHHH
Confidence            999999999999999888655443

>PHA02517 putative transposase OrfB; Reviewed

Probab=97.65  E-value=3.7e-05  Score=73.85  Aligned_cols=84  Identities=19%  Similarity=0.137  Sum_probs=71.3

Q ss_pred             eeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc----ccchHHHHHHHHHHhcCc-cCCC
Q psy15955        361 IVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN----WNNVDEELLNFSQSYNST-PHTT  435 (475)
Q Consensus       361 ~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~----~~~~~~~l~~~l~~y~~~-~~~~  435 (475)
                      .++.+..+.+..|..+|...|+.+..+.+++|+.||.+|++++++|..+....    ..+....+..++..||+. ||.+
T Consensus       174 ~sD~G~~y~s~~~~~~~~~~gi~~~~~~~~~P~~N~~iEr~~~tlK~e~~~~~~~~s~~~l~~~~~~~i~~YN~~R~h~~  253 (277)
T PHA02517        174 HSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHER  253 (277)
T ss_pred             ecccccccchHHHHHHHHHcCcccccCCCCCCCCccccchhHhhhhhhhhcCccCCCHHHHHHHHHHHHHHhCcCCcccc
Confidence            37888888889999999999999999999999999999999999998665432    255667778888889865 8998


Q ss_pred             C-CCChhhhh
Q psy15955        436 L-GVSPAELH  444 (475)
Q Consensus       436 ~-~~sP~~l~  444 (475)
                      + +.||.|..
T Consensus       254 l~~~tP~~~~  263 (277)
T PHA02517        254 LGYTPPAEAE  263 (277)
T ss_pred             cCCcCHHHHH
Confidence            8 79999864

>PF13683 rve_3: Integrase core domain

Probab=97.64  E-value=5.7e-06  Score=60.83  Aligned_cols=61  Identities=25%  Similarity=0.413  Sum_probs=50.0

Q ss_pred             ccceecccCCCCCCCCCchhhhhHHHHHHhhhcc----ccchHHHHHHHHHHhcCc-cCCCCC-CCh
Q psy15955        380 VGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN----WNNVDEELLNFSQSYNST-PHTTLG-VSP  440 (475)
Q Consensus       380 ~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~----~~~~~~~l~~~l~~y~~~-~~~~~~-~sP  440 (475)
                      .||.+..+.+..|+.||.+||+++++|..+....    ..+....|..++..||.. ||.++| .||
T Consensus         1 ~gI~~~~~~~~~p~~N~~~Er~~~tlK~e~~~~~~~~s~~~~~~~v~~~~~~YN~~RpH~~l~~~tP   67 (67)
T PF13683_consen    1 HGIKHSMSRPGSPQDNGKVERFNRTLKREFLYRHPFTSLEELRKQVDEWIDFYNHERPHSALGYKTP   67 (67)
T ss_pred             CCeEEEeCCCCCcccccceeeehhhhccchhcccceecccccccccceEEEeEcCcCCChHHcCcCc
Confidence            4789999999999999999999999988655432    266777788888899977 899884 655

>KOG3837|consensus

Probab=97.45  E-value=4.9e-05  Score=73.07  Aligned_cols=134  Identities=16%  Similarity=0.245  Sum_probs=101.0

Q ss_pred             EEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEe--CCCCceEEeeeecCCCCceeeeeEEeecccc-----c-
Q psy15955        107 FSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALL--PDKKHRLETKIKRRTLNPRWNETLYFEGFPI-----Q-  178 (475)
Q Consensus       107 ~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~--~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~-----~-  178 (475)
                      +.+--+.....|.+.|+++.+++.......-|-||++.+.  ++..++.+|.+++++.+|.|+|.|... +..     . 
T Consensus       358 v~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~  436 (523)
T KOG3837|consen  358 VAFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNRE  436 (523)
T ss_pred             hhhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHH
Confidence            3333444667789999999999876544556889998862  334556789999999999999999876 222     0 


Q ss_pred             ---ccccceEEEEEEeeCCC-CCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955        179 ---KLQSRVLHLHVFDYDRF-SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYH  241 (475)
Q Consensus       179 ---~~~~~~L~~~V~d~d~~-~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~  241 (475)
                         ......+.|+||+...+ ..|.++|.+.+.|.-|.........++|........|.|.+.+...
T Consensus       437 fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  437 FQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             HHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence               01134699999998765 4688999999999999888788889999887667778887777654

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=97.28  E-value=0.00026  Score=67.09  Aligned_cols=87  Identities=24%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             cceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHH-hhhccc---cchHHHHHHHHHHhcCc-cC
Q psy15955        359 QTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRF-LRKCNW---NNVDEELLNFSQSYNST-PH  433 (475)
Q Consensus       359 ~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~-l~~~~~---~~~~~~l~~~l~~y~~~-~~  433 (475)
                      ...++.+..+.+..|..++...|+.+..+.+.+|+.||.+|++++++|.- +.....   .+....+..+...||+. ||
T Consensus       155 iihSD~Gsqy~s~~~~~~l~~~gI~~Smsr~g~p~dNa~~Erf~~tlK~E~l~~~~~~~~~~~~~~i~~~i~~YN~~R~h  234 (262)
T PRK14702        155 EWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPH  234 (262)
T ss_pred             EEEcCCCcccchHHHHHHHHHcCCeeccCCCCCCCcchHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCc
Confidence            45588888999999999999999999999999999999999999999975 432221   33445555566679977 89


Q ss_pred             CCC-CCChhhhhc
Q psy15955        434 TTL-GVSPAELHL  445 (475)
Q Consensus       434 ~~~-~~sP~~l~~  445 (475)
                      +++ +.||.|..-
T Consensus       235 ~~L~~~tP~e~~~  247 (262)
T PRK14702        235 SALGYRSPREYLR  247 (262)
T ss_pred             cccCCCCHHHHHH
Confidence            998 599988743

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.12  E-value=0.0045  Score=53.58  Aligned_cols=92  Identities=17%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~  322 (475)
                      ..++|.|+++.++...   ..+|-||++.+..+++... ...|..+.. .++.|||.+.|+|...+|. ++.|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            4678999999998764   3468999998877665442 223443333 6799999999998777764 56799999997


Q ss_pred             cCCC----CCeeeEEEEEcCcC
Q psy15955        323 DNIG----RNELIGRILLAGKN  340 (475)
Q Consensus       323 ~~~~----~d~~lG~~~i~l~~  340 (475)
                      ....    ....||.+.+++.+
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEEC
Confidence            6421    23579999998865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PRK09409 IS2 transposase TnpB; Reviewed

Probab=97.07  E-value=0.00058  Score=66.15  Aligned_cols=88  Identities=25%  Similarity=0.285  Sum_probs=70.5

Q ss_pred             cceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhh-hcc---ccchHHHHHHHHHHhcCc-cC
Q psy15955        359 QTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLR-KCN---WNNVDEELLNFSQSYNST-PH  433 (475)
Q Consensus       359 ~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~-~~~---~~~~~~~l~~~l~~y~~~-~~  433 (475)
                      ...++.+..+.+..|..++...|+.+..+.+.+|+.||.+|++++++|.-+. ...   ..+....+..+...||+. ||
T Consensus       194 iihSDrGsqy~s~~~~~~l~~~gI~~Smsr~g~p~dNa~~Erf~~tlK~E~l~~~~~~~~~e~~~~i~~~i~~YN~~R~H  273 (301)
T PRK09409        194 EWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPH  273 (301)
T ss_pred             EEecCCCcccccHHHHHHHHHcCCeEeeCCCCCCCccchhHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhccCCc
Confidence            4568888899999999999999999999999999999999999999997533 221   233445555666678877 89


Q ss_pred             CCCC-CChhhhhcC
Q psy15955        434 TTLG-VSPAELHLG  446 (475)
Q Consensus       434 ~~~~-~sP~~l~~g  446 (475)
                      +++| .||.|..-.
T Consensus       274 ~~Lg~~tP~e~~~~  287 (301)
T PRK09409        274 SALGYRSPREYLRQ  287 (301)
T ss_pred             cccCCCCHHHHHhc
Confidence            9995 999987554

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.01  E-value=0.0062  Score=53.74  Aligned_cols=94  Identities=20%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~  322 (475)
                      ..++|+|+.+.++...  ....+-||++.+..+++... ...|..+....++.|||.+.|+|...+|. ++.|.|+||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            4688999999999762  23467889988877766543 33455555457799999999998777764 56799999997


Q ss_pred             cCCC----------------CCeeeEEEEEcCcC
Q psy15955        323 DNIG----------------RNELIGRILLAGKN  340 (475)
Q Consensus       323 ~~~~----------------~d~~lG~~~i~l~~  340 (475)
                      ....                .+..||.+.+++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            6422                24689999997755

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.95  E-value=0.0066  Score=52.77  Aligned_cols=95  Identities=17%  Similarity=0.216  Sum_probs=66.7

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEecc
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFD  323 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~  323 (475)
                      .++|.+....++... .....+-||++.+..+++... ...|.......++.|||.+.|++...+|. ++.|.|+||+.+
T Consensus         9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            566777777776541 123467888888877665332 33444444447899999999998766664 567999999987


Q ss_pred             CCC--CCeeeEEEEEcCcCC
Q psy15955        324 NIG--RNELIGRILLAGKNG  341 (475)
Q Consensus       324 ~~~--~d~~lG~~~i~l~~~  341 (475)
                      ..+  ++..||.+.+++.+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            654  468999999988653

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.84  E-value=0.0066  Score=52.72  Aligned_cols=78  Identities=17%  Similarity=0.197  Sum_probs=59.6

Q ss_pred             CCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955        264 GKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       264 ~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  341 (475)
                      ..++-||++.+..+++... ...|..+.-+..+.|||.+.|+|...+|. ++.|.|+||+....++...||.+.+++.+.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            4478899998877665432 23555555567789999999998877775 567999999988766778999999988654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.80  E-value=0.0091  Score=51.01  Aligned_cols=128  Identities=23%  Similarity=0.261  Sum_probs=88.8

Q ss_pred             CCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccc----------
Q psy15955        114 DNSTLILRVISAKELPAKDM--SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQ----------  181 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~----------  181 (475)
                      ....|.+.|..++-...--.  .+..+.-+.+++. -.+++++|+.+..+.+|.|+|.|.|+ ++.+...          
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls   84 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLS   84 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhc
Confidence            34468889888876653321  1455666666653 35688999999999999999999998 5544311          


Q ss_pred             -cceEEEEEEeeCCCCCCccccceeeccccccCCCCc--ceeeccCCCCCC---cccceeeeeeecCC
Q psy15955        182 -SRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP--TFWKALKPPAKD---KCGELLTSLCYHPS  243 (475)
Q Consensus       182 -~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~~~---~~G~l~l~l~~~~~  243 (475)
                       ...|++.|--.|..+...++|...+.-..+...+..  ..-..|.....+   ..|-|.++++..|.
T Consensus        85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence             245888888778776678999988888877666654  333444433333   67888888887764

>PLN02964 phosphatidylserine decarboxylase

Probab=96.77  E-value=0.0025  Score=67.09  Aligned_cols=91  Identities=14%  Similarity=0.125  Sum_probs=71.2

Q ss_pred             ecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955        240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV  319 (475)
Q Consensus       240 ~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V  319 (475)
                      -.+-.+.+.+++++|+    ++.   .|+|..+.-.    ...++||...+.|.||+||+...|.|...+.+  ...|.|
T Consensus        49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~----g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~  115 (644)
T PLN02964         49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSF----GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISV  115 (644)
T ss_pred             cccccCeEEEEeehhh----hcc---CCcEEEEEEe----cceeeeeccccccCCcccchhhceEeccCCcc--eEEEEE
Confidence            3445688889988887    322   4888765322    23568999999999999999999998776654  369999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      ||++++.+++++|.|.+++.+...
T Consensus       116 ~~~~~~s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        116 FETNRLSKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             EecCCCCHHHhhhheeecHhhccH
Confidence            999999999999999997765544

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.57  E-value=0.014  Score=51.57  Aligned_cols=98  Identities=17%  Similarity=0.181  Sum_probs=70.7

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeee-eeccccc----CCCCCeecceEEEeecccccc-cceEEE
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEK-RKTQIFK----CNLNPVFNESFSFNVPWEKIR-ECSLNV  317 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~-~~T~~~~----~t~nP~w~e~f~f~v~~~~l~-~~~l~i  317 (475)
                      ...+.|.|..+.+++........|-||.+.+..+++.... ..|+...    -...+.|||.+.|++...+|- ++.|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3467888999999988765556789999998877765432 2333221    123577999999998766664 467999


Q ss_pred             EEEeccCCC---------CCeeeEEEEEcCcCC
Q psy15955        318 MVMDFDNIG---------RNELIGRILLAGKNG  341 (475)
Q Consensus       318 ~V~d~~~~~---------~d~~lG~~~i~l~~~  341 (475)
                      +||+....+         .+..||.+.+++.+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999977644         457999999988653

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.55  E-value=0.019  Score=50.56  Aligned_cols=94  Identities=14%  Similarity=0.160  Sum_probs=62.6

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc-cceEEEEEEeccC
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDN  324 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~  324 (475)
                      .++|.|..+.. +..+.......||++.+..++......+|.....+.++.|||.+.|+|...+|. ++.|.|+||+...
T Consensus        11 ~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            56677777663 333333334577888776655544444566666677899999999998777775 5679999999642


Q ss_pred             CC----------------CCeeeEEEEEcCcC
Q psy15955        325 IG----------------RNELIGRILLAGKN  340 (475)
Q Consensus       325 ~~----------------~d~~lG~~~i~l~~  340 (475)
                      ..                .+..||.+.+.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEc
Confidence            21                24577888886654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.51  E-value=0.012  Score=51.99  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=54.9

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEE
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVF  190 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~  190 (475)
                      ...+.|+|+++.+|...  ....+-||++.+.-++..   ...|+.+.....+.|||.+.|. +.+.++ ....|.|.||
T Consensus         7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~   83 (173)
T cd08693           7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY   83 (173)
T ss_pred             CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence            45799999999999862  244677888877433321   2355555545679999999998 666665 4578999999


Q ss_pred             eeCC
Q psy15955        191 DYDR  194 (475)
Q Consensus       191 d~d~  194 (475)
                      +...
T Consensus        84 ~~~~   87 (173)
T cd08693          84 EVSK   87 (173)
T ss_pred             Eecc
Confidence            9764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.42  E-value=0.033  Score=47.63  Aligned_cols=103  Identities=19%  Similarity=0.454  Sum_probs=76.2

Q ss_pred             CCceeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc--------
Q psy15955        242 PSNSVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR--------  311 (475)
Q Consensus       242 ~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~--------  311 (475)
                      |....|.+.|+.++-....-.  .+..+..+.+++...++   +++|..+..+.+|.|+|.|.|.++.+...        
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~Q---RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l   82 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQ---RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL   82 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCc---eEecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence            456788999999887643221  15567778888877664   46899999999999999999998755411        


Q ss_pred             ---cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCc
Q psy15955        312 ---ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQ  359 (475)
Q Consensus       312 ---~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~  359 (475)
                         ...|.+-|...+..+...++|.-.+            .|+.++..+..
T Consensus        83 ls~~~pihivli~~d~~~~~~Lv~s~~l------------dWR~vL~s~~~  121 (156)
T PF15627_consen   83 LSISDPIHIVLIRTDPSGETTLVGSHFL------------DWRKVLCSGNG  121 (156)
T ss_pred             hcCCCceEEEEEEecCCCceEeeeecee------------hHHHHhccCCC
Confidence               2468888888777766688888877            68887766553

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.37  E-value=0.025  Score=48.26  Aligned_cols=75  Identities=19%  Similarity=0.271  Sum_probs=55.5

Q ss_pred             cceEEEEEEeCceeee--eeecccccCC-CCCeecceEEEeecccccc-cceEEEEEEeccCCCCC----eeeEEEEEcC
Q psy15955        267 DPYVKVWLQFGEKRIE--KRKTQIFKCN-LNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDNIGRN----ELIGRILLAG  338 (475)
Q Consensus       267 dpyv~v~l~~~~~~~~--~~~T~~~~~t-~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d----~~lG~~~i~l  338 (475)
                      +-||.+.+..+++...  ...|....-+ .++.|+|.+.|++...+|. ++.|.|+||..+.....    ..||.+.+++
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            4678888877776654  3467666666 7999999999998777764 56799999998876555    7999999988


Q ss_pred             cCC
Q psy15955        339 KNG  341 (475)
Q Consensus       339 ~~~  341 (475)
                      .+.
T Consensus        83 Fd~   85 (142)
T PF00792_consen   83 FDY   85 (142)
T ss_dssp             B-T
T ss_pred             ECC
Confidence            654

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.25  E-value=0.023  Score=49.25  Aligned_cols=92  Identities=23%  Similarity=0.317  Sum_probs=64.2

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEE
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVF  190 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~  190 (475)
                      ...++|+|+++.++.-.+   .+|-||++.+..++..   ...|+.+.. .++.|||...|. +.+.++ ..+.|.|+||
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~   81 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSIC   81 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEE
Confidence            457999999999998643   4688999987543321   123443333 579999999998 666665 4578999999


Q ss_pred             eeCCCC----CCccccceeeccccc
Q psy15955        191 DYDRFS----RDDSIGEVFLPLCQV  211 (475)
Q Consensus       191 d~d~~~----~~~~iG~~~i~l~~l  211 (475)
                      +....+    ....+|.+.++|-+.
T Consensus        82 ~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          82 SVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             EEecccCCCCceEEEEEEEEEEECC
Confidence            976421    224588888888664

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.95  E-value=0.13  Score=43.67  Aligned_cols=117  Identities=21%  Similarity=0.303  Sum_probs=73.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEee-eecCCCCceeeeeEEeeccccc------ccccceEEE
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK-IKRRTLNPRWNETLYFEGFPIQ------KLQSRVLHL  187 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~-v~~~~~nP~w~e~f~f~~~~~~------~~~~~~L~~  187 (475)
                      .+.|.|....+++...    ...||+...  .+..  ...|. +...+-.-.|++.|.+. ..+.      .++...+.|
T Consensus         8 ~~~l~i~~l~~~p~~~----~~v~v~wkr--~~~~~~~~~t~~~~~~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    8 QFDLTIHELENLPSSN----GKVFVKWKR--GDKSKGSGTTSRANVKNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             EEEEEEEEeECcCCCC----CEEEEEEEE--CCCCccceeeeeeeccccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEE
Confidence            5788889999888721    223444443  2222  33444 33345568999999887 2221      245567999


Q ss_pred             EEEeeCCCCCCccccceeeccccccCCC--CcceeeccCCCCCCcccceeeeeeec
Q psy15955        188 HVFDYDRFSRDDSIGEVFLPLCQVDLSE--KPTFWKALKPPAKDKCGELLTSLCYH  241 (475)
Q Consensus       188 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~G~l~l~l~~~  241 (475)
                      .|+.....++...+|.+.+.|++.....  ....-++|... ......|.+++.+.
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~-~~~~a~L~isi~~~  135 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC-KKSNATLSISISLS  135 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC-CCCCcEEEEEEEEE
Confidence            9998754344368999999999997653  33445555543 35556677776654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.85  E-value=0.039  Score=47.90  Aligned_cols=95  Identities=24%  Similarity=0.326  Sum_probs=64.8

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEE
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVF  190 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~  190 (475)
                      ...++|++....++...+ ....+-||.+.+.-++..   ...|.......++.|||...|. +.+.++ ....|.|+||
T Consensus         7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~   84 (156)
T cd08380           7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY   84 (156)
T ss_pred             CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence            346788888888876521 234677888877533321   2244444434689999999998 555554 4678999999


Q ss_pred             eeCCCC--CCccccceeeccccc
Q psy15955        191 DYDRFS--RDDSIGEVFLPLCQV  211 (475)
Q Consensus       191 d~d~~~--~~~~iG~~~i~l~~l  211 (475)
                      +.+..+  .+..||.+.++|-+.
T Consensus        85 ~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          85 AVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             EEecCCCCcceEEEEEeEEeEcc
Confidence            987554  467899999998664

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1265|consensus

Probab=95.84  E-value=0.014  Score=61.75  Aligned_cols=89  Identities=22%  Similarity=0.384  Sum_probs=66.3

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEE--eCceeeeeeeccccc-CCCCCeecc-eEEEe-ecccccccceEEEE
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQ--FGEKRIEKRKTQIFK-CNLNPVFNE-SFSFN-VPWEKIRECSLNVM  318 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~--~~~~~~~~~~T~~~~-~t~nP~w~e-~f~f~-v~~~~l~~~~l~i~  318 (475)
                      ...+.|+|+.+.=|..++    ...||.|.+.  +.+.....++|+++. ++.||+|+| .|.|. |-..+|  +.|.|.
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia  775 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA  775 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence            357899999999887654    4589999884  333333556777776 579999996 68887 555666  479999


Q ss_pred             EEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        319 VMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       319 V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      ||+..    ..+||+-.+|+..+.
T Consensus       776 vyeEg----gK~ig~RIlpvd~l~  795 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVDGLN  795 (1189)
T ss_pred             eeccC----Cceeeeeccchhccc
Confidence            99854    579999999875444

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=95.78  E-value=0.0013  Score=54.19  Aligned_cols=53  Identities=25%  Similarity=0.446  Sum_probs=47.1

Q ss_pred             CCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHh
Q psy15955        357 PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFL  409 (475)
Q Consensus       357 p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l  409 (475)
                      |....++.+.-+.+..|+.+|..+|+.+..++++.|+.||.+||+++++++.+
T Consensus        68 p~~i~tD~g~~f~~~~~~~~~~~~~i~~~~~~~~~p~~ng~vEr~~~~l~~~~  120 (120)
T PF00665_consen   68 PRVIRTDNGSEFTSHAFEAWCKHLGIKHVFTPPYTPQQNGFVERFNRTLKRRI  120 (120)
T ss_dssp             -SEEEEESCHHHHSHHHHHHHHHHT-EEEESSTSSTHHHHHHHHHHHHHHHHH
T ss_pred             ceecccccccccccchhhhHHHHcCceEeeCCCCChhhccHHHHHHHHHHHhC
Confidence            67788888888888899999999999999999999999999999999998753

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.77  E-value=0.08  Score=51.64  Aligned_cols=116  Identities=25%  Similarity=0.382  Sum_probs=84.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc-----cccceEEEEEEee
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK-----LQSRVLHLHVFDY  192 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~-----~~~~~L~~~V~d~  192 (475)
                      +.|.|++|++.+...   .-.-.+...+   ++....|..+..+-.|.||.+..++ +....     .+...|++++|..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~---ng~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~   74 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKF---NGESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAV   74 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEe---CCceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEe
Confidence            678999999999773   1234566666   4567789989999999999998776 33322     2456799999988


Q ss_pred             C-CCCCCccccceeeccccc---cCC--CCcceeeccCCCCC---Ccccceeeeeee
Q psy15955        193 D-RFSRDDSIGEVFLPLCQV---DLS--EKPTFWKALKPPAK---DKCGELLTSLCY  240 (475)
Q Consensus       193 d-~~~~~~~iG~~~i~l~~l---~~~--~~~~~~~~L~~~~~---~~~G~l~l~l~~  240 (475)
                      | ..+..+.||.+.++|...   ..+  .....||+|.....   +..-+|.+++..
T Consensus        75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i  131 (340)
T PF12416_consen   75 DGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI  131 (340)
T ss_pred             cCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence            8 556778999999999988   444  34568999987633   234566666644

>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta

Probab=95.53  E-value=0.0051  Score=57.03  Aligned_cols=38  Identities=13%  Similarity=0.032  Sum_probs=30.4

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      .=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus       200 ~v~~n~r~l~RvYP~GtRidSSNynP~~~W~~G~QmVA  237 (257)
T cd08595         200 FVGHTQRFITRIYPKGTRASSSNYNPQEFWNVGCQMVA  237 (257)
T ss_pred             HHHHhhcCCceeCcCCCCCCCCCCCcHHHHcCCCeEEE
Confidence            44789999999999999999999999887544443333

This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)

>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein

Probab=95.47  E-value=0.0059  Score=56.91  Aligned_cols=41  Identities=12%  Similarity=0.041  Sum_probs=32.2

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCC
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSS   59 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (475)
                      .=+++++.+.|+||+|+|+||+|++|...|    ..|+++.+-+-
T Consensus       203 ~v~~n~~~l~RvYP~G~RvdSSNynP~~~W----~~G~QmVALN~  243 (260)
T cd08597         203 FVNYNKKFLSRVYPSPMRVDSSNYNPQDFW----NCGCQIVAMNY  243 (260)
T ss_pred             HHHHhhhcCceeCcCCCCCCCCCCCchHHh----cCCCeEeeecc
Confidence            447899999999999999999999998874    44554444333

This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.45  E-value=0.034  Score=48.32  Aligned_cols=76  Identities=22%  Similarity=0.320  Sum_probs=55.5

Q ss_pred             CCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEeeCCCCCCccccceeecccc
Q psy15955        135 GTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQ  210 (475)
Q Consensus       135 ~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~  210 (475)
                      ..+|-||.+.+..++..   ...|+.+.-+..+.|||...|. |.+.++ ..+.|.|+|||.+..++...+|.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            45788888887533321   2355555556678999999998 666665 457899999998866567789999999866


Q ss_pred             c
Q psy15955        211 V  211 (475)
Q Consensus       211 l  211 (475)
                      -
T Consensus       107 ~  107 (159)
T cd08397         107 K  107 (159)
T ss_pred             C
Confidence            4

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.38  E-value=0.044  Score=48.34  Aligned_cols=96  Identities=22%  Similarity=0.322  Sum_probs=66.6

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeee--cC--CCCceeeeeEEeeccccccc-ccceEE
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIK--RR--TLNPRWNETLYFEGFPIQKL-QSRVLH  186 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~--~~--~~nP~w~e~f~f~~~~~~~~-~~~~L~  186 (475)
                      ...+.|+|.++.+++........|-||.+.+.-++..   ...|+..  .+  ...+.|||...|. +.+.++ ....|.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~   85 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV   85 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence            4568899999999998775556889999987533321   1234321  11  2357799999998 555554 467899


Q ss_pred             EEEEeeCCCC---------CCccccceeeccccc
Q psy15955        187 LHVFDYDRFS---------RDDSIGEVFLPLCQV  211 (475)
Q Consensus       187 ~~V~d~d~~~---------~~~~iG~~~i~l~~l  211 (475)
                      |++|+....+         .+..||.+.++|-+.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            9999977543         346788888888664

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3

Probab=95.36  E-value=0.0064  Score=56.49  Aligned_cols=38  Identities=16%  Similarity=0.086  Sum_probs=30.1

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      .=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus       201 ~v~~n~~~l~RiYPkgtRidSSNynP~~~W~~G~QmVA  238 (258)
T cd08630         201 FVRHNARQLTRVYPLGLRMNSANYSPQEMWNSGCQLVA  238 (258)
T ss_pred             HHHhhhcccceeCCCCCcCCCCCCCcHHHhcCCCeEEE
Confidence            34679999999999999999999999877544444333

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh

>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2

Probab=95.05  E-value=0.0091  Score=55.14  Aligned_cols=38  Identities=18%  Similarity=0.127  Sum_probs=30.0

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      .=+++++++.||||+|+|+||+|++|...|...+...+
T Consensus       197 ~v~~N~~~l~RvYP~G~RvdSSNy~P~~~W~~G~QmVA  234 (254)
T cd08633         197 YLRFNQRQLSRIYPSSYRVDSSNYNPQPFWNAGCQMVA  234 (254)
T ss_pred             HHHhhhhcccccCCCCCCCCCCCCCchHHhcCCCeEEE
Confidence            34689999999999999999999999877544443333

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=95.01  E-value=0.16  Score=40.29  Aligned_cols=78  Identities=22%  Similarity=0.241  Sum_probs=52.0

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEEeccC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVMDFDN  324 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~d~~~  324 (475)
                      +.+.+....+.........++-||++.+..+++... ...|..+.-...+.|||.+.|++...+|. ++.|.|+||+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            445555555554433222358999998877665543 23455545456689999999998777764 5679999998653

Outlier of C2 family.

>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4

Probab=94.99  E-value=0.0092  Score=55.33  Aligned_cols=38  Identities=16%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      .=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus       200 ~v~~n~~~l~RiYP~G~RvdSSNynP~~~W~~G~QmVA  237 (257)
T cd08626         200 FVNYNKRQMSRIYPKGTRVDSSNYMPQIFWNAGCQMVS  237 (257)
T ss_pred             HHHHhhhcCceeCcCCCCCcCCCCCcHHHhcCCCeEEE
Confidence            34789999999999999999999999887544443333

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1

Probab=94.95  E-value=0.0096  Score=54.88  Aligned_cols=41  Identities=10%  Similarity=0.058  Sum_probs=32.1

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCC
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSS   59 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (475)
                      .-+++++++.||||+|+|+||||++|...|    ..|+++.+-+-
T Consensus       196 ~v~~n~~~l~RvYP~g~RidSSNy~P~~~W----~~G~QmVAlN~  236 (253)
T cd08632         196 FMTYNQKQLTRIYPSAYRIDSSNFNPLPYW----NVGCQLVALNY  236 (253)
T ss_pred             HHHHhhhccceeCCCCCcCcCCCCCcHHHh----cCCCeEEEecc
Confidence            347899999999999999999999998774    45555444433

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m

>KOG3837|consensus

Probab=94.95  E-value=0.0092  Score=57.88  Aligned_cols=97  Identities=14%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc-----cc----ccce
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE-----KI----RECS  314 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-----~l----~~~~  314 (475)
                      ...|.+.|.++++++.....-..|-||++..........+-+|.+++.+.+|.|+|.|...|...     ++    ....
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            55788888889888765543446889988763222223456899999999999999998887531     11    1346


Q ss_pred             EEEEEEeccCC-CCCeeeEEEEEcCcC
Q psy15955        315 LNVMVMDFDNI-GRNELIGRILLAGKN  340 (475)
Q Consensus       315 l~i~V~d~~~~-~~d~~lG~~~i~l~~  340 (475)
                      +.|+|++...+ .+|.++|.+.+.+.-
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~  472 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEI  472 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehh
Confidence            89999998875 668999999996643

>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1

Probab=94.88  E-value=0.0092  Score=55.32  Aligned_cols=38  Identities=18%  Similarity=0.070  Sum_probs=30.1

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      .=+++++++.||||+|+|+||+|++|...|...+...+
T Consensus       201 ~v~~n~~~l~RiYP~g~RvdSSNy~P~~~W~~G~QmVA  238 (258)
T cd08629         201 FVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVA  238 (258)
T ss_pred             HHHhchhccceeCCCCCCCCCCCCCchHHhcCCceEEE
Confidence            34679999999999999999999999877544443333

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=94.69  E-value=0.17  Score=49.48  Aligned_cols=101  Identities=15%  Similarity=0.380  Sum_probs=71.9

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc-----cceEEEEEEe
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR-----ECSLNVMVMD  321 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-----~~~l~i~V~d  321 (475)
                      +.|.|++|++++...   .-...+...+  ++..   -.|..+..+..|.||....+.+....+.     ..+|++++|.
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~--ng~~---l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a   73 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKF--NGES---LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFA   73 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEe--CCce---eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEE
Confidence            578899999998762   2344555544  3333   3688888899999999999987544443     5789999999


Q ss_pred             cc-CCCCCeeeEEEEEcCcCC---CCC--ccccccccccc
Q psy15955        322 FD-NIGRNELIGRILLAGKNG---SGA--SETKHWQDMIT  355 (475)
Q Consensus       322 ~~-~~~~d~~lG~~~i~l~~~---~~~--~~~~~w~~~~~  355 (475)
                      .+ ..++.+.||.+.++|...   ..+  .....|+.+++
T Consensus        74 ~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~  113 (340)
T PF12416_consen   74 VDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLS  113 (340)
T ss_pred             ecCCCCcceeccEEEEEccccccccccccccCCCeeEccc
Confidence            88 557789999999998665   332  23345555554

>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2

Probab=94.66  E-value=0.015  Score=53.94  Aligned_cols=38  Identities=16%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             HHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955         17 RFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA   54 (475)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (475)
                      +++++.+.||||+|+|+||+|++|...|...+...+.+
T Consensus       199 ~~N~~~l~RvYP~G~RvdSSNynP~~~W~~G~QmVALN  236 (254)
T cd08628         199 KYNRKGLTRVYPKGQRVDSSNYDPFRLWLCGSQMVALN  236 (254)
T ss_pred             HHhHhhhhhhCCCCCcCCCCCCCchHHhcCCCeEEEee
Confidence            78999999999999999999999988765555444433

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw

>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon

Probab=94.64  E-value=0.0099  Score=55.04  Aligned_cols=37  Identities=16%  Similarity=0.015  Sum_probs=29.9

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCC
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEG   51 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   51 (475)
                      .=+++++++.|+||+|+|+||+|++|...|...+...
T Consensus       197 lv~~n~~~l~RiYP~g~RvdSSNynP~~~W~~G~QmV  233 (254)
T cd08596         197 LVQHTRCQLLRTYPAATRIDSSNPNPLIFWLHGLQLV  233 (254)
T ss_pred             HHHhhhhcceeeccCCCcCCCCCCCcHHHHhCCCeEE
Confidence            4578999999999999999999999987744443333

This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core

>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4

Probab=94.47  E-value=0.014  Score=54.17  Aligned_cols=40  Identities=13%  Similarity=0.101  Sum_probs=31.6

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS   58 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (475)
                      .=+++++++.|+||+|+|+||+|++|...|    ..|+++.+-+
T Consensus       201 ~v~~n~~~l~RiYP~g~RvdSSNy~P~~~W----~~G~QmVALN  240 (258)
T cd08631         201 FVQHNTWQLSRVYPSGLRTDSSNYNPQEMW----NAGCQMVALN  240 (258)
T ss_pred             HHHHHHhcCceeCcCCCCCCCCCCCcHHHH----hCCCeEeeec
Confidence            346899999999999999999999998774    4555544443

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which

>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta

Probab=94.45  E-value=0.015  Score=53.93  Aligned_cols=38  Identities=18%  Similarity=0.201  Sum_probs=30.4

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      .=+++++++.|+||+|+|+||+|++|...|...+...+
T Consensus       200 ~v~~n~~~l~RvYP~g~RvdSSNynP~~~W~~G~QmVA  237 (257)
T cd08591         200 FVNYNKRQLSRIYPKGTRVDSSNYMPQIFWNAGCQMVA  237 (257)
T ss_pred             HHHHhhhcCceeCcCCCcCcCCCCCcHHHhcCCCeEEE
Confidence            33689999999999999999999999877544444443

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod

>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma

Probab=94.30  E-value=0.019  Score=52.36  Aligned_cols=39  Identities=15%  Similarity=0.148  Sum_probs=31.1

Q ss_pred             HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955         16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA   54 (475)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (475)
                      =+++++++.|+||+|+|+||||++|...|...+...+.+
T Consensus       173 v~~n~~~l~RvYP~g~RvdSSNy~P~~~W~~G~QmVAlN  211 (229)
T cd08592         173 LKYNRRQLSRVYPKGQRVDSSNYDPVPMWNCGSQMVALN  211 (229)
T ss_pred             HHhhhhcceeeCCCCCcCcCCCCCchHHhcCCceEEEee
Confidence            358899999999999999999999988755554444433

This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.28  E-value=0.49  Score=42.08  Aligned_cols=42  Identities=24%  Similarity=0.464  Sum_probs=36.7

Q ss_pred             eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      .++|-|...+.+|.|+|++.+. +|.+.....-|.|++++...
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~   95 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCST   95 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeee
Confidence            5689999999999999999999 89888888899999987543

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta

Probab=94.21  E-value=0.018  Score=52.30  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=30.6

Q ss_pred             HHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcc
Q psy15955         16 SRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAI   53 (475)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (475)
                      -+++++.+.|+||+|+|+||+|++|...|...+...+.
T Consensus       171 v~~n~~~l~RiYP~g~RvdSSNy~P~~~W~~G~QmVAL  208 (227)
T cd08594         171 LRFNQRQLSRIYPSAYRIDSSNFNPQPYWNAGCQLVAL  208 (227)
T ss_pred             HHhcccccceeCCCCCcCcCCCCCchHHhcCCceEEEe
Confidence            36788999999999999999999998875555444443

This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,

>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3

Probab=94.10  E-value=0.024  Score=52.89  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=32.2

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccC
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIAS   55 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (475)
                      .=+++++.+.|+||+|+|+||+|++|...|...+...+.+=
T Consensus       201 ~v~~N~~~l~RvYP~G~RvdSSNydP~~~W~~G~QmVALN~  241 (258)
T cd08625         201 FVEYNKKQLSRIYPKGTRVDSSNYMPQLFWNVGCQMVALNF  241 (258)
T ss_pred             HHHhhhcceeeeccCCCcCcCCCCCChhHhcCcceEEEeec
Confidence            34678999999999999999999999877655555555443

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2

Probab=93.96  E-value=0.023  Score=52.84  Aligned_cols=40  Identities=15%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA   54 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (475)
                      .=.++++.+.|+||+|+|+||+|++|...|...+...+.+
T Consensus       204 fv~~N~~~l~RiYP~G~RvdSSNynP~~~W~~G~QmVALN  243 (261)
T cd08624         204 FVEYNKRQMSRIYPKGTRMDSSNYMPQMFWNVGCQMVALN  243 (261)
T ss_pred             HHHhchhheeeeCCCCCcccCcCCCchHHhcCCCeEEEec
Confidence            3467889999999999999999999988765555555444

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=93.93  E-value=0.63  Score=41.46  Aligned_cols=42  Identities=21%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      .++|-|...+.+|.|+|++.+. +|.+.....-|.|++++...
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~   95 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSS   95 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeecc
Confidence            5688898999999999999999 89888888899999987653

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.88  E-value=0.13  Score=43.77  Aligned_cols=72  Identities=26%  Similarity=0.410  Sum_probs=49.5

Q ss_pred             cEEEEEEeCCCC----ceEEeeeecCC-CCceeeeeEEeeccccccc-ccceEEEEEEeeCCCCCC----ccccceeecc
Q psy15955        139 PYVKVALLPDKK----HRLETKIKRRT-LNPRWNETLYFEGFPIQKL-QSRVLHLHVFDYDRFSRD----DSIGEVFLPL  208 (475)
Q Consensus       139 pyv~v~l~~~~~----~~~kT~v~~~~-~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~d~~~~~----~~iG~~~i~l  208 (475)
                      .||.+.+.-++.    ....|....-+ .++.|+|...|. +...++ ....|.|+||+.+.....    ..||.+.++|
T Consensus         4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            466666643322    12356666655 799999999998 666665 467899999998865554    6899999998


Q ss_pred             ccc
Q psy15955        209 CQV  211 (475)
Q Consensus       209 ~~l  211 (475)
                      -+.
T Consensus        83 Fd~   85 (142)
T PF00792_consen   83 FDY   85 (142)
T ss_dssp             B-T
T ss_pred             ECC
Confidence            665

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta

Probab=93.68  E-value=0.021  Score=53.15  Aligned_cols=38  Identities=18%  Similarity=0.116  Sum_probs=30.1

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      .=+++++.+.|+||+|+|+||+|++|...|...+...+
T Consensus       200 lv~~n~~~l~RvYP~g~RidSSNynP~~~W~~G~QmVA  237 (257)
T cd08593         200 FVRHNKRQLSRIYPAGLRTDSSNYDPQEMWNVGCQIVA  237 (257)
T ss_pred             HHHhhhhccceeCCCCCcCCCCCCCcHHHHhCCCeEee
Confidence            34689999999999999999999999877544443333

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.53  E-value=0.41  Score=42.26  Aligned_cols=78  Identities=17%  Similarity=0.305  Sum_probs=50.2

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEe
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFD  191 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d  191 (475)
                      ...++|+|.++. .+..+......-||++.+.-++.  ...+|.....+.++.|||...|. +...++ ....|.|+||+
T Consensus         9 ~~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~   86 (178)
T cd08399           9 DRKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence            446888888876 33333233334667776543221  12256666666789999999998 666665 45789999999


Q ss_pred             eCC
Q psy15955        192 YDR  194 (475)
Q Consensus       192 ~d~  194 (475)
                      ...
T Consensus        87 ~~~   89 (178)
T cd08399          87 GKA   89 (178)
T ss_pred             Eec
Confidence            753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C

Probab=93.47  E-value=0.029  Score=51.25  Aligned_cols=39  Identities=21%  Similarity=0.172  Sum_probs=30.6

Q ss_pred             hHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         14 TLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      ..-+++++.+.|+||+|+|+||+|++|...|...+...+
T Consensus       170 ~~v~~n~~~l~RvYP~g~RvdSSNy~P~~~W~~G~QmVA  208 (228)
T cd08599         170 DLIEFTQKNLLRVYPAGLRITSSNYDPMLAWMHGAQMVA  208 (228)
T ss_pred             HHHHHhhccceeeccCCcccCCCCCCChHHhcCcceEee
Confidence            344789999999999999999999999777544443333

This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi

>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1

Probab=93.47  E-value=0.04  Score=51.25  Aligned_cols=40  Identities=18%  Similarity=0.181  Sum_probs=31.4

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCccc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIA   54 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (475)
                      .=+.+++.+.|+||+|+|+||+|++|...|...+...+.+
T Consensus       201 ~v~~N~~~l~RvYP~G~RvdSSNy~P~~~W~~G~QmVALN  240 (258)
T cd08623         201 FVEYNKMQLSRIYPKGTRVDSSNYMPQLFWNAGCQMVALN  240 (258)
T ss_pred             HHHHhhhhceeeccCCCcccCCCCCChhhhcCCceEEEee
Confidence            3468899999999999999999999977755544444433

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=93.43  E-value=1  Score=40.19  Aligned_cols=59  Identities=15%  Similarity=0.224  Sum_probs=38.2

Q ss_pred             eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCC---eeeEEEEEcCcC
Q psy15955        282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRN---ELIGRILLAGKN  340 (475)
Q Consensus       282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d---~~lG~~~i~l~~  340 (475)
                      ..+.|.+...+.+|.|+|+|.+.+|.....+.-|.|++++...-.+.   ..+|-+.++|-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            44578888888999999999999998777778899999997654322   689999998855

>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins

Probab=93.26  E-value=0.029  Score=51.20  Aligned_cols=40  Identities=18%  Similarity=0.156  Sum_probs=31.5

Q ss_pred             hhHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         13 LTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      ...-.++++.+.||||+|+|+||+|++|...|...+...+
T Consensus       167 ~~l~~~n~~~l~RvYP~g~RvdSSNynP~~~W~~G~QmVA  206 (226)
T cd08558         167 EEFVKYNKRQLSRVYPKGTRVDSSNYNPQPFWNAGCQMVA  206 (226)
T ss_pred             HHHHHhcccceeEECcCCCcCCCCCCCcHHHHhCCCeEee
Confidence            3455678999999999999999999999887544444443

This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki

>KOG1452|consensus

Probab=93.03  E-value=0.46  Score=44.82  Aligned_cols=121  Identities=18%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             EEeCCCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEE
Q psy15955        110 EYDFDNSTLILRVISAKELPAKDM--SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHL  187 (475)
Q Consensus       110 ~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~  187 (475)
                      ......|.|.++++.+|+|.....  +-.-+-||++..  +..++.+|.|.....-=.|.|+|..++   -  ....+.+
T Consensus        45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~vrs~~~~f~w~e~F~~Dv---v--~~~vl~~  117 (442)
T KOG1452|consen   45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRVRSSGPGFAWAEDFKHDV---V--NIEVLHY  117 (442)
T ss_pred             eeecccceEEEEEecccccccChhccCceeeeeeeeee--cccCccccccccCCCCccchhhceeec---c--cceeeeE
Confidence            334568899999999999985432  335688998887  444556777777777778999998763   2  2457889


Q ss_pred             EEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955        188 HVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYH  241 (475)
Q Consensus       188 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~  241 (475)
                      -||.|+.-.++.+.-.-.+.+..+. .......+.|.   -+++|++.+.+.+.
T Consensus       118 lvySW~pq~RHKLC~~g~l~~~~v~-rqspd~~~Al~---lePrgq~~~r~~~~  167 (442)
T KOG1452|consen  118 LVYSWPPQRRHKLCHLGLLEAFVVD-RQSPDRVVALY---LEPRGQPPLRLPLA  167 (442)
T ss_pred             EEeecCchhhccccccchhhhhhhh-hcCCcceeeee---cccCCCCceecccC
Confidence            9999987655555333233333332 11222222221   13456766666553

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.91  E-value=0.83  Score=35.10  Aligned_cols=84  Identities=21%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             CCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCC
Q psy15955        137 SDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK  216 (475)
Q Consensus       137 ~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~  216 (475)
                      ++..+.+.+  +.....+|.-... .+..|++.|.|+   .+  ..+.|+|.||=.|.   ..+.|...+.|++..    
T Consensus         9 ~eV~avLkl--Dn~~VgqT~Wk~~-s~q~WDQ~Fti~---Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~----   73 (98)
T cd08687           9 SEVSAVLKL--DNTVVGQTQWKPK-SNQAWDQSFTLE---LE--RSRELEIAVYWRDW---RSLCAVKFLKLEDER----   73 (98)
T ss_pred             cceEEEEEE--cCeEEeecccccc-ccccccceeEEE---ee--cccEEEEEEEEecc---hhhhhheeeEhhhhc----
Confidence            567777887  3444556665443 478899999987   33  46789999997664   357888888888832    


Q ss_pred             cceeeccCCCCCCcccceeeeeee
Q psy15955        217 PTFWKALKPPAKDKCGELLTSLCY  240 (475)
Q Consensus       217 ~~~~~~L~~~~~~~~G~l~l~l~~  240 (475)
                      +..-.+|.     +.|.+...+.|
T Consensus        74 ~~~~~~le-----pqg~l~~ev~f   92 (98)
T cd08687          74 HEVQLDME-----PQLCLVAELTF   92 (98)
T ss_pred             ccceeccc-----cccEEEEEEEe
Confidence            23344444     34777777666

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=92.62  E-value=0.28  Score=43.52  Aligned_cols=57  Identities=18%  Similarity=0.322  Sum_probs=45.6

Q ss_pred             eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCC--CeeeEEEEEcC
Q psy15955        282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR--NELIGRILLAG  338 (475)
Q Consensus       282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l  338 (475)
                      ..++|.+...+.+|.|+|++.+.||.+...+.-|.|++++.....+  ...+|-..++|
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            3467888888999999999999999998888899999988554321  25688887776

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=92.35  E-value=1.7  Score=34.45  Aligned_cols=77  Identities=23%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEee
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDY  192 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~  192 (475)
                      .+.+.+....+.........++-||.+.+..++..   ...|+.+.-...+.|||...|. +...++ ....|.|+||+.
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~   90 (100)
T smart00142       12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV   90 (100)
T ss_pred             ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence            36677777777765544344689999987543322   2245555545568999999998 666655 457899999986


Q ss_pred             CC
Q psy15955        193 DR  194 (475)
Q Consensus       193 d~  194 (475)
                      ..
T Consensus        91 ~~   92 (100)
T smart00142       91 KN   92 (100)
T ss_pred             eC
Confidence            53

Outlier of C2 family.

>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1

Probab=92.23  E-value=0.045  Score=49.85  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=29.2

Q ss_pred             HHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCc
Q psy15955         17 RFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGA   52 (475)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   52 (475)
                      +++++++.|+||+|+|+||+|++|...|...+...+
T Consensus       174 ~~n~~~l~RiYP~G~RidSSNy~P~~~W~~G~QmVA  209 (229)
T cd08627         174 QYNRRQLSRIYPKGQRLDSSNYDPLPMWICGSQLVA  209 (229)
T ss_pred             HhcccceeEeCCCCCcCcCCCCCchhHhccCcEEEE
Confidence            588999999999999999999999877544444433

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=91.78  E-value=1.2  Score=37.78  Aligned_cols=93  Identities=22%  Similarity=0.278  Sum_probs=57.8

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecc------cccccceEEE
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPW------EKIRECSLNV  317 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~------~~l~~~~l~i  317 (475)
                      -.+.+.|.+..+++.      .+..+.|.+..+++......|.... ....-.|++.|.+.+..      ..+....+.|
T Consensus         7 f~~~l~i~~l~~~p~------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    7 FQFDLTIHELENLPS------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             EEEEEEEEEeECcCC------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            356788888888876      2334444443333221112333222 34556899999998643      1255677999


Q ss_pred             EEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        318 MVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       318 ~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      .|+.....++...+|.+.|.|+++..
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~  106 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYAN  106 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhC
Confidence            99987543444699999999877665

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=91.50  E-value=0.37  Score=43.05  Aligned_cols=58  Identities=17%  Similarity=0.356  Sum_probs=36.3

Q ss_pred             eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCC---ccccceeecccc
Q psy15955        152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRD---DSIGEVFLPLCQ  210 (475)
Q Consensus       152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~---~~iG~~~i~l~~  210 (475)
                      .+.|.|..++.+|.|+|+|.+. +|.......-|.|++++...-.+.   ..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            4578899999999999999999 888777778899999987643221   578887777755

>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C

Probab=90.90  E-value=0.08  Score=48.51  Aligned_cols=38  Identities=13%  Similarity=0.090  Sum_probs=30.3

Q ss_pred             hhHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCC
Q psy15955         13 LTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAME   50 (475)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   50 (475)
                      ...=+++++.+.|+||+|+|+||+|++|...|...+..
T Consensus       172 ~~lv~~n~~~l~RvYP~g~RvdSSNynP~~~W~~G~Qm  209 (231)
T cd08598         172 AALDKHNRRHLMRVYPSGTRISSSNFNPLPFWRAGVQM  209 (231)
T ss_pred             HHHHHHhhhceeeeCCCCCcCCCCCCCcHHHHhCCCeE
Confidence            34457899999999999999999999998774443333

This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=90.45  E-value=2.1  Score=37.89  Aligned_cols=56  Identities=18%  Similarity=0.368  Sum_probs=39.8

Q ss_pred             EEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC-----CCccccceeecccc
Q psy15955        153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS-----RDDSIGEVFLPLCQ  210 (475)
Q Consensus       153 ~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~-----~~~~iG~~~i~l~~  210 (475)
                      ++|-+..+ .+|.|+|+|... +|.......-|.|++++...-.     ....+|-+.+||-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            34444444 899999999999 7777666788999999876322     24567777666643

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=90.26  E-value=0.84  Score=40.71  Aligned_cols=57  Identities=14%  Similarity=0.229  Sum_probs=45.2

Q ss_pred             eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC-CCC---eeeEEEEEcC
Q psy15955        282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI-GRN---ELIGRILLAG  338 (475)
Q Consensus       282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~-~~d---~~lG~~~i~l  338 (475)
                      ..++|.+.....+|.|+|++.+.||.+...+.-|.|++++.... .+|   ..+|-..++|
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL  113 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL  113 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence            45678888889999999999999999998888999999886532 122   4677777766

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.12  E-value=5.9  Score=35.20  Aligned_cols=41  Identities=15%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      ...|.|..++.+|.|.|++.+. +|.......-|.|+.|+..
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvs   97 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVS   97 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeec
Confidence            4578899999999999999998 8887777778999999876

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=85.58  E-value=2  Score=38.00  Aligned_cols=42  Identities=10%  Similarity=0.229  Sum_probs=36.0

Q ss_pred             eEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       152 ~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      ...|.|...+.+|.|+|++... +|.......-|.|+.++.+.
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~   96 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISC   96 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeec
Confidence            4578899999999999999998 88777677789999998664

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=84.30  E-value=1.7  Score=34.96  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc-----cccceEEEEEEeeCCCCCCccccceeeccccccCC
Q psy15955        140 YVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK-----LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS  214 (475)
Q Consensus       140 yv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~-----~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~  214 (475)
                      ||.+.+.  +-....|.++. +.+|.+|-+-.|. +...+     ++...+.++++..-. .....+|.+.+++..+...
T Consensus         2 Fct~dFy--dfEtq~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~   76 (107)
T PF11618_consen    2 FCTYDFY--DFETQTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES   76 (107)
T ss_dssp             EEEE-ST--T---EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred             EEEEEee--ceeeeccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence            4444442  33445677776 8899999887776 44433     345789999998763 3467899999999998744


Q ss_pred             CC--cceeeccCCCCCCcccceeeeee
Q psy15955        215 EK--PTFWKALKPPAKDKCGELLTSLC  239 (475)
Q Consensus       215 ~~--~~~~~~L~~~~~~~~G~l~l~l~  239 (475)
                      ..  ......|....++.-|.|.+.++
T Consensus        77 ~~~~i~~~~~l~g~~~~~~g~l~y~~r  103 (107)
T PF11618_consen   77 NGERIHGSATLVGVSGEDFGTLEYWIR  103 (107)
T ss_dssp             -S--EEEEEEE-BSSS-TSEEEEEEEE
T ss_pred             CCceEEEEEEEeccCCCeEEEEEEEEE
Confidence            33  33445555555556666665554

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=82.38  E-value=3.3  Score=36.71  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=41.7

Q ss_pred             eecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC-----CCCeeeEEEEEcCcC
Q psy15955        284 RKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI-----GRNELIGRILLAGKN  340 (475)
Q Consensus       284 ~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~-----~~d~~lG~~~i~l~~  340 (475)
                      ++|-+... .+|.|+++|.+.+|.....+.-|.|++++....     .....+|-+.++|-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            34444444 899999999999987665677899999986643     235789999998743

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=82.11  E-value=13  Score=33.14  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=44.4

Q ss_pred             eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCC--C-------CCeeeEEEEEcCc
Q psy15955        282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNI--G-------RNELIGRILLAGK  339 (475)
Q Consensus       282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~--~-------~d~~lG~~~i~l~  339 (475)
                      ....|.+...+.+|.|.|++.+.+|...-...-|.|++++....  .       ....+|-+.+||-
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl  122 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL  122 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence            34578888889999999999999988776677899999997621  1       1356788777763

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG1452|consensus

Probab=81.67  E-value=4.1  Score=38.65  Aligned_cols=83  Identities=14%  Similarity=0.130  Sum_probs=54.3

Q ss_pred             eecCCceeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEE
Q psy15955        239 CYHPSNSVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLN  316 (475)
Q Consensus       239 ~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~  316 (475)
                      ......|.|.+.++++|+|.....  +-+.+-|+.+  .++.  ..+.+|.+.....--.|.|.|+.++-..    ..+.
T Consensus        45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVl--e~dr--qh~aRt~vrs~~~~f~w~e~F~~Dvv~~----~vl~  116 (442)
T KOG1452|consen   45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVL--EPDR--QHPARTRVRSSGPGFAWAEDFKHDVVNI----EVLH  116 (442)
T ss_pred             eeecccceEEEEEecccccccChhccCceeeeeeee--eecc--cCccccccccCCCCccchhhceeecccc----eeee
Confidence            344567899999999999976543  4456778776  4442  2344566554445556889988876422    2577


Q ss_pred             EEEEeccCCCCCe
Q psy15955        317 VMVMDFDNIGRNE  329 (475)
Q Consensus       317 i~V~d~~~~~~d~  329 (475)
                      +-||.|+.-.++.
T Consensus       117 ~lvySW~pq~RHK  129 (442)
T KOG1452|consen  117 YLVYSWPPQRRHK  129 (442)
T ss_pred             EEEeecCchhhcc
Confidence            8888887644443

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=81.42  E-value=4.4  Score=35.84  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=43.9

Q ss_pred             eeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCC------CeeeEEEEEcC
Q psy15955        282 EKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR------NELIGRILLAG  338 (475)
Q Consensus       282 ~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~------d~~lG~~~i~l  338 (475)
                      ....|.+...+.+|.|+|++...+|...-.+.-|.|++++.....+      ...+|-..+||
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL  116 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL  116 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence            3457888888999999999999998777667789999998554322      25678777766

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>COG2826 Tra8 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]

Probab=81.12  E-value=1.5  Score=41.51  Aligned_cols=74  Identities=27%  Similarity=0.398  Sum_probs=61.1

Q ss_pred             cccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc--cchHHHHHHHHHHhcCccCCCCC-CChhhhhc
Q psy15955        372 EMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW--NNVDEELLNFSQSYNSTPHTTLG-VSPAELHL  445 (475)
Q Consensus       372 ~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~--~~~~~~l~~~l~~y~~~~~~~~~-~sP~~l~~  445 (475)
                      .+.++...+++.--+..||.|.-.|..|..||-|+.++-|-..  .-..+.|..+....|+.|...+| .||+|++.
T Consensus       235 ~~~~l~~~l~~~vyfcdp~apWQRGtnENtNgliRrf~PKgTdla~vt~~el~~i~~~lN~rPRK~Lg~ktp~E~f~  311 (318)
T COG2826         235 RHSELEKRLGADVYFADPYASWQRGTNENTNGLIRRFLPKGTDLAAVTQEELAAIADLLNHRPRKCLGYKTPYEVFL  311 (318)
T ss_pred             HHHHHHhhcCCceEecCCCCchhcccccccccHHHHhCCCCCchhhCCHHHHHHHHHHHhcCchhhhCCCCHHHHHH
Confidence            3444566778888889999999999999999999999887653  33567788888999999999997 89999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	475
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		1e-66
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		3e-61
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		3e-61
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		2e-45
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		5e-15
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		2e-40
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		6e-31
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		4e-30
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		6e-30
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		7e-30
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		7e-30
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		9e-17
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		9e-30
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		8e-17
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		9e-30
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		7e-17
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		4e-29
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		4e-16
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		9e-27
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		3e-10
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		7e-23
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		3e-06
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		2e-19
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		4e-12
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-19
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		5e-12
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		3e-18
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		1e-11
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		1e-17
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		2e-17
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		2e-17
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		3e-13
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		9e-05
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		2e-12
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		8e-05
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		3e-12
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		3e-12
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		4e-06
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-12
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-09
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		5e-12
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		1e-09
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		7e-12
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		1e-06
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		7e-12
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		2e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		9e-12
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-09
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		3e-11
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-11
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-09
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		7e-11
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		1e-10
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		2e-09
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-08
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-05
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		8e-08
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		9e-06
2q3x_A	171	The Rim1alpha C2b Domain Length = 171		1e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		4e-05

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 189/282 (67%), Gaps = 6/282 (2%)
Query: 99  SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIK 158
           SE +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ 
Sbjct: 2   SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH 61
Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
           R+TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD      
Sbjct: 62  RKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 120
Query: 219 FWKALKPPAKD---KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQ 275
            W+ L+   K+   K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L 
Sbjct: 121 EWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 180
Query: 276 FGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRIL 335
              KR++K+KT I K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ 
Sbjct: 181 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 240
Query: 336 LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           + G N +GA E +HW DM+  PR+ I QWH L+ + E+   L
Sbjct: 241 V-GYNSTGA-ELRHWSDMLANPRRPIAQWHTLQVEEEVDAML 280

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score =  232 bits (592), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/285 (42%), Positives = 178/285 (62%), Gaps = 8/285 (2%)
Query: 97  EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETK 156
           E     G+I F+L Y + +  L++R++ A +LPAKD +G SDPYVK+ LLPD+K + +TK
Sbjct: 2   EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 61
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
           + R+TLNP +NET  F   P+ +L  R LH  V+D+DRFSR D IG+V L    ++L+E+
Sbjct: 62  VHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL-LELAEQ 119
Query: 217 PT---FWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVK 271
           P     W+ +     +K   GEL  SLCY P+  +LT+T++KA NLKA D+ G SDPYVK
Sbjct: 120 PPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVK 179
Query: 272 VWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELI 331
             L    +R++KRKT I K  LNP +NE+  F+V  E +    L++ V+D+D IG NE+I
Sbjct: 180 ASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVI 239
Query: 332 GRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTF 376
           G +   G   +     +HW +M+  PR+ +  WH+L  +  + +F
Sbjct: 240 G-VCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSF 283

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score =  232 bits (592), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/285 (42%), Positives = 178/285 (62%), Gaps = 8/285 (2%)
Query: 97  EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETK 156
           E     G+I F+L Y + +  L++R++ A +LPAKD +G SDPYVK+ LLPD+K + +TK
Sbjct: 1   EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 60
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
           + R+TLNP +NET  F   P+ +L  R LH  V+D+DRFSR D IG+V L    ++L+E+
Sbjct: 61  VHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL-LELAEQ 118
Query: 217 PT---FWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVK 271
           P     W+ +     +K   GEL  SLCY P+  +LT+T++KA NLKA D+ G SDPYVK
Sbjct: 119 PPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVK 178
Query: 272 VWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELI 331
             L    +R++KRKT I K  LNP +NE+  F+V  E +    L++ V+D+D IG NE+I
Sbjct: 179 ASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVI 238
Query: 332 GRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTF 376
           G +   G   +     +HW +M+  PR+ +  WH+L  +  + +F
Sbjct: 239 G-VCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSF 282

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/126 (63%), Positives = 103/126 (81%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
           EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+LETK+KR
Sbjct: 10  ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR 69
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           + LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL++  TF
Sbjct: 70  KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 129
Query: 220 WKALKP 225
           WK LKP
Sbjct: 130 WKDLKP 135

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQ 287
           ++  G +  S+ Y+   S LT+ ++KA+ L AKD +G SDP+VK++L   +K   K +T+
Sbjct: 9   RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK--HKLETK 66
Query: 288 IFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASE 346
           + + NLNP +NE+F F   P+EK+ +  L + V+D+D   RN+ IG + +          
Sbjct: 67  VKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQM 126
Query: 347 TKHWQDM 353
              W+D+
Sbjct: 127 QTFWKDL 133

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 107/137 (78%), Gaps = 2/137 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + +KR+EK+KT   K 
Sbjct: 3   GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
           NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+ K+G G  E KHW+
Sbjct: 63  NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPG--EVKHWK 120
Query: 352 DMITKPRQTIVQWHRLK 368
           DMI +PRQ + QWH+LK
Sbjct: 121 DMIARPRQPVAQWHQLK 137

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score =  131 bits (330), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/137 (47%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GELL SLCY  + + LT+ +LKAR+L   D++G SDPYVKV L   +KRI K+KT + KC
Sbjct: 17  GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL-AGKNGSGASETKHW 350
             N VFNE F F++P E + E S+  +V+D +   RNE+IGR++L A   GSG     HW
Sbjct: 77  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGG---HW 133
Query: 351 QDMITKPRQTIVQWHRL 367
           +++   PR+ I +WH L
Sbjct: 134 KEICDFPRRQIAKWHML 150

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQ 287
           ++K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    KR++K+KT 
Sbjct: 1   QEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTT 60
Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
           I K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ + G N +GA E 
Sbjct: 61  IKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTGA-EL 118
Query: 348 KHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           +HW DM+  PR+ I QWH L+ + E+   L
Sbjct: 119 RHWSDMLANPRRPIAQWHTLQVEEEVDAML 148

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score =  128 bits (322), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    KR++K+KT I
Sbjct: 1   EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 60
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ + G N +GA E +
Sbjct: 61  KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTGA-ELR 118
Query: 349 HWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           HW DM+  PR+ I QWH L+ + E+   L
Sbjct: 119 HWSDMLANPRRPIAQWHTLQVEEEVDAML 147

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    KR++K+KT I
Sbjct: 9   EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ + G N +GA E +
Sbjct: 69  KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTGA-ELR 126
Query: 349 HWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           HW DM+  PR+ I QWH L+ + E+   L
Sbjct: 127 HWSDMLANPRRPIAQWHTLQVEEEVDAML 155

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
           E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R
Sbjct: 1   EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 60
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           +TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD       
Sbjct: 61  KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 119
Query: 220 WKALKPPAK 228
           W+ L+   K
Sbjct: 120 WRDLQSAEK 128

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L   +K+  K +T++
Sbjct: 1   EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 58
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            +  LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +          T+
Sbjct: 59  HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 118
Query: 349 HWQDM 353
            W+D+
Sbjct: 119 EWRDL 123

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score =  128 bits (321), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
           E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R
Sbjct: 18  EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           +TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD       
Sbjct: 78  KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
Query: 220 WKALK 224
           W+ L+
Sbjct: 137 WRDLQ 141

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L   +K+  K +T++
Sbjct: 18  EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 75
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            +  LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +          T+
Sbjct: 76  HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 135
Query: 349 HWQDM 353
            W+D+
Sbjct: 136 EWRDL 140

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score =  127 bits (320), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR 159
           E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R
Sbjct: 18  EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR 77
Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
           +TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD       
Sbjct: 78  KTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 136
Query: 220 WKALK 224
           W+ L+
Sbjct: 137 WRDLQ 141

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L   +K+  K +T++
Sbjct: 18  EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 75
Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            +  LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +          T+
Sbjct: 76  HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 135
Query: 349 HWQDM 353
            W+D+
Sbjct: 136 EWRDL 140

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score =  125 bits (315), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT 161
           +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ R+T
Sbjct: 28  LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT 87
Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWK 221
           LNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD       W+
Sbjct: 88  LNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR 146
Query: 222 ALK 224
            L+
Sbjct: 147 DLQ 149

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
            G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L   +K+  K +T++ +
Sbjct: 28  LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHR 85
Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350
             LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +          T+ W
Sbjct: 86  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW 145
Query: 351 QDM 353
           +D+
Sbjct: 146 RDL 148

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score =  118 bits (295), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/112 (46%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 105 IHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLETKIKRRTLN 163
           + FSLEY+F+    ++ +  A+ LPA D  S TSDPY+K+ +LP+KKH+++T++ R+TL+
Sbjct: 11  LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLD 70
Query: 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215
           P ++ET  F G P  ++Q   LH  +  +DRFSRDD IGEV +PL  ++LSE
Sbjct: 71  PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 234 LLTSLCYHPSNSVLTITLLKARNLKAKDING-KSDPYVKVWLQFGEKRIEKRKTQIFKCN 292
           L  SL Y+       + + +AR L A D     SDPY+K+ +   EK+  K KT++ +  
Sbjct: 11  LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTI-LPEKK-HKVKTRVLRKT 68
Query: 293 LNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           L+P F+E+F+F  +P+ +I+E +L+  ++ FD   R+++IG +L+
Sbjct: 69  LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLI 113

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 84/133 (63%), Gaps = 10/133 (7%)
Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPA--------KDMSGTSDPYVKVALLPDKKHR 152
            +G +HFS +YD  ++ L +RVI A++LP         +DM+  S+PYVK+ LLPD+K+ 
Sbjct: 11  QLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMA-HSNPYVKICLLPDQKNS 69
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
            +T +KR+T  P + E   FE  P  + Q R L L V D+D+FSR   IG+V +PLC+VD
Sbjct: 70  KQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD 128
Query: 213 LSEKPTFWKALKP 225
           L +   +WKAL P
Sbjct: 129 LVKGGHWWKALIP 141

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 228 KDKCGELLTSLCYHPSNSVLTITLLKARNL-------KAKDINGKSDPYVKVWLQFGEKR 280
           K + G L  S  Y   ++ LT+ +++AR+L        ++     S+PYVK+ L   +K 
Sbjct: 9   KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKN 68
Query: 281 IE----KRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
            +    KRKTQ       PVF E ++F +P+ + +  +L + V+DFD   R+ +IG++
Sbjct: 69  SKQTGVKRKTQ------KPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKV 120

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 95  NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP--DKKHR 152
           +++ +  +G + FSL YD DNS L   +I AK L   D +G +DPYVK+ LLP   K ++
Sbjct: 8   DSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNK 67
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
           L TK  R T NP WNETL + G   + +Q + L + V D D+F  ++ IGE    L ++ 
Sbjct: 68  LRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127
Query: 213 LSEKPTF 219
            +++  F
Sbjct: 128 ANQRKNF 134

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G L  SL Y   NS L  T+++A+ LK  D NG +DPYVK+ L  G  +  K +T+  + 
Sbjct: 16  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIG 332
             NPV+NE+  ++ +  E ++  +L + V D D  G NE IG
Sbjct: 76  TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIG 117

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 95  NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP--DKKHR 152
           +++ +  +G + FSL YD DNS L   +I AK L   D +G +DPYVK+ LLP   K ++
Sbjct: 6   DSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNK 65
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
           L TK  R T NP WNETL + G   + +Q + L + V D D+F  ++ IGE    L ++ 
Sbjct: 66  LRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 125
Query: 213 LSEKPTF 219
            +++  F
Sbjct: 126 ANQRKNF 132

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G L  SL Y   NS L  T+++A+ LK  D NG +DPYVK+ L  G  +  K +T+  + 
Sbjct: 14  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIG 332
             NPV+NE+  ++ +  E ++  +L + V D D  G NE IG
Sbjct: 74  TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIG 115

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 13/133 (9%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK-----------KH 151
           G+I   + YD  N  LI+ ++ A+ L  +D +G SDP+VKV LLP +           ++
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           +  TK  +++LNP WN+T+ ++   +++L  + L + V+DYDRFS +D +GEV + L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 212 DLSEKPTFWKALK 224
              +    W  LK
Sbjct: 125 SHLDNTPRWYPLK 137

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI--------- 281
            GE+   + Y   N  L I +L+ARNL  +D NG SDP+VKV+L  G  ++         
Sbjct: 6   TGEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 282 EKRKTQIFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKN 340
            KR+T+  + +LNP +N++  + ++  E++ + +L V V D+D    N+ +G +L+   +
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 341 GSGASETKHW 350
            S    T  W
Sbjct: 124 TSHLDNTPRW 133

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G++L SL Y      L + +++  +L A D NG SDP+VK+WL+    +  K KTQI K 
Sbjct: 24  GKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKK 83
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNP FNE F +++    + + SL++ V D+D    N+ IG   L G +  G    KHW 
Sbjct: 84  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLKHWY 141
Query: 352 DMITKPRQTIVQWHRLKPDHEMQT 375
           + +    + I +WH+L+ ++ + +
Sbjct: 142 ECLKNKDKKIERWHQLQNENHVSS 165

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G++L SL Y      L + +++  +L A D NG SDP+VK+WL+    +  K KTQI K 
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNP FNE F +++    + + SL++ V D+D    N+ IG   L G +  G    KHW 
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLKHWY 119
Query: 352 DMITKPRQTIVQWHRLKPDH 371
           + +    + I +WH+L+ ++
Sbjct: 120 ECLKNKDKKIERWHQLQNEN 139

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G++L SL Y      L + +++  +L A D NG SDP+VK+WL+    +  K KTQI K 
Sbjct: 24  GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 83
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNP FNE F +++    + + SL++ V D+D    N+ IG   L G +  G    KHW 
Sbjct: 84  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLKHWY 141
Query: 352 DMITKPRQTIVQWHRLKPDHEMQT 375
           + +    + I +WH+L+ ++ + +
Sbjct: 142 ECLKNKDKKIERWHQLQNENHVSS 165

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 10/123 (8%)
Query: 101 NVGQIHFSLEYDFDNSTLI-LRVISAKELPAKDMSGTSDPYVKVALLPDKKHR----LET 155
            +G+  + L  D   S ++ ++V+S  +L  KD+ G SDPYVK++L    ++R    ++T
Sbjct: 5   GLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQT 64
Query: 156 KIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE 215
           K  ++TLNP+WNE  YF   P     +  L   VFD +R +RDD +G+V +PL  +  +E
Sbjct: 65  KTIKKTLNPKWNEEFYFRVNP----SNHRLLFEVFDENRLTRDDFLGQVDVPLSHLP-TE 119
Query: 216 KPT 218
            PT
Sbjct: 120 DPT 122

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 231 CGELLTSLCYHPSNS-VLTITLLKARNLKAKDINGKSDPYVKVWLQFGE--KRIEKRKTQ 287
            GE +  L      S +L + ++   +L  KDI G SDPYVK+ L   +  + +   +T+
Sbjct: 6   LGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTK 65
Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
             K  LNP +NE F F V     R   L   V D + + R++ +G++
Sbjct: 66  TIKKTLNPKWNEEFYFRVNPSNHR---LLFEVFDENRLTRDDFLGQV 109

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRR 160
           GQ+   L +D     LI+ ++ AK+LP+++     +PYVK+  LPD+  K++  TK  ++
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDS--IGEVFLPLCQVDLSEKPT 218
           TL P+WN+T  +     ++ + R+L + ++D  R   ++S  +GE+ + L    L ++P 
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 219 FWK 221
           ++K
Sbjct: 125 WYK 127

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
            G+L   L +      L +T+L A++L +++     +PYVK++         KR+T+  K
Sbjct: 4   SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK 63
Query: 291 CNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASET 347
             L P +N++F ++ V   + RE  L + + D   +    +E +G IL+  +      E 
Sbjct: 64  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 123
Query: 348 KHW 350
            HW
Sbjct: 124 -HW 125

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 8/106 (7%)
Query: 107 FSLEYDFDNSTLI-LRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL---ETKIKRRTL 162
           F L  D +NS ++ +RVI+   L  KD+ G SDPYV+V L       L   +TK  +++L
Sbjct: 10  FGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSL 69
Query: 163 NPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
           NP+WNE + F   P    Q   L   VFD +R +RDD +G+V +PL
Sbjct: 70  NPKWNEEILFRVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPL 111

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKIKRR 160
           G +  S+ Y   N TL + V+  K+L  +D     +PYVK  LLPD  K  + +TKI R+
Sbjct: 9   GAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           T NP +NE L + G+  + L+ R L L V   +    +  +G + LPL   +LS++   W
Sbjct: 66  TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125
Query: 221 KAL 223
             L
Sbjct: 126 YQL 128

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
            G +  S+ Y   N  L I ++  ++L  +D     +PYVK +L     +  KRKT+I +
Sbjct: 8   SGAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISR 64
Query: 291 CNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKH 349
              NP FNE   ++    E +R+  L + V+  +++  N  +G I L  K+ + + ET  
Sbjct: 65  KTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVK 124
Query: 350 WQDM 353
           W  +
Sbjct: 125 WYQL 128

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 99  SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
           +E  G+I+   E    +  L + V  AK L   D +G SDPYVK+ L+PD K+  + +TK
Sbjct: 1   TEKRGRIYLKAE--VTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 58
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
             R TLNP+WNE+  F+  P  K   R L + ++D+DR +R+D +G +   + ++
Sbjct: 59  TIRSTLNPQWNESFTFKLKPSDK--DRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
           ++  L +T+  A+NL   D NG SDPYVK+ L    K   K+KT+  +  LNP +NESF+
Sbjct: 14  TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 73
Query: 303 FNV-PWEKIRECSLNVMVMDFDNIGRNELIGRI 334
           F + P +K R   L+V + D+D   RN+ +G +
Sbjct: 74  FKLKPSDKDRR--LSVEIWDWDRTTRNDFMGSL 104

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 99  SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
           +E  G+I+   E    +  L + V  AK L   D +G SDPYVK+ L+PD K+  + +TK
Sbjct: 2   TEKRGRIYLKAE--VTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTK 59
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
             R TLNP+WNE+  F+  P  K   R L + ++D+DR +R+D +G +   + ++
Sbjct: 60  TIRSTLNPQWNESFTFKLKPSDK--DRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
           ++  L +T+  A+NL   D NG SDPYVK+ L    K   K+KT+  +  LNP +NESF+
Sbjct: 15  TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 74
Query: 303 FNV-PWEKIRECSLNVMVMDFDNIGRNELIGRI 334
           F + P +K R   L+V + D+D   RN+ +G +
Sbjct: 75  FKLKPSDKDRR--LSVEIWDWDRTTRNDFMGSL 105

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 102 VGQIHFSLEYDFDNSTLILRVISAKELP-AKDMSGTSDPYVKVALLPDK--KHRLETKIK 158
            G+I FSL+Y+    +L++ V    +L  A +    S+PYVK  LLPDK  + + +T IK
Sbjct: 9   TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
           R T+NP ++ETL +E  P   L  R L   V+ + RF R+  +GE  + +    L +K
Sbjct: 69  RDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKK 125

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLK-AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
           G +  SL Y      L + + +   L  A +   +S+PYVK +L   + R  KRKT I +
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
             +NP+++E+  + +P   + + +L   V      GRN  +G
Sbjct: 70  DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLG 111

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 4/122 (3%)
Query: 104 QIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRT 161
           Q+   L +D     LI+ ++ AK+LP+++     +PYVK+  LPD+  K++  TK  ++T
Sbjct: 9   QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 162 LNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDS--IGEVFLPLCQVDLSEKPTF 219
           L P+WN+T  +     ++ + R+L + ++D  R   ++S  +GE+ + L    L ++P +
Sbjct: 69  LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHW 128
Query: 220 WK 221
           +K
Sbjct: 129 YK 130

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 233 ELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCN 292
           +L   L +      L +T+L A++L +++     +PYVK++         KR+T+  K  
Sbjct: 9   QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 293 LNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASETKH 349
           L P +N++F ++ V   + RE  L + + D   +    +E +G IL+  +      E  H
Sbjct: 69  LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP-H 127
Query: 350 WQDMIT 355
           W  + T
Sbjct: 128 WYKLQT 133

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 99  SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
           +E  G+I+   E    +  L + V  AK L   D +G SDPYVK+ L+PD K+  + +TK
Sbjct: 3   TEKRGRIYLKAE--VADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTK 60
Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
             R TLNP+WNE+  F+  P  K   R L + ++D+DR +R+D  G +   + ++
Sbjct: 61  TIRSTLNPQWNESFTFKLKPSDK--DRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFS 302
           ++  L +T+  A+NL   D NG SDPYVK+ L    K   K+KT+  +  LNP +NESF+
Sbjct: 16  ADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 75
Query: 303 FNV-PWEKIRECSLNVMVMDFDNIGRNELIGRI 334
           F + P +K R   L+V + D+D   RN+  G +
Sbjct: 76  FKLKPSDKDRR--LSVEIWDWDRTTRNDFXGSL 106

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESF 301
           P+   + +T+ +ARNL   D NG SDPYVK+ L    + + K+KT+  K  LNPV+NE+F
Sbjct: 17  PTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76
Query: 302 SFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
            FN+    + E  L+V V D+D   RN+ +G
Sbjct: 77  VFNLKPGDV-ERRLSVEVWDWDRTSRNDFMG 106

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 95  NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HR 152
            T+ +E  G+I+  ++   D   LI+ V  AK L   D +G SDPYVK+ L+PD K   +
Sbjct: 153 GTDHTERRGRIY--IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESK 210
Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEV 204
            +TK  + +LNP WNET  F+    +  + R L + ++D+D  SR+D +G +
Sbjct: 211 QKTKTIKSSLNPEWNETFRFQ--LKESDKDRRLSVEIWDWDLTSRNDFMGSL 260

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 241 HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNES 300
           H    VL + +  A+NL   D NG SDPYVK+ L    K   K+KT+  K +LNP +NE+
Sbjct: 168 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNET 227
Query: 301 FSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
           F F +  E  ++  L+V + D+D   RN+ +G +
Sbjct: 228 FRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSL 260

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 241 HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNES 300
           H    VL + +  A+NL   D NG SDPYVK+ L    K   K+KT+  KC+LNP +NE+
Sbjct: 27  HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 86
Query: 301 FSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRI 334
           F F +  E  ++  L+V + D+D   RN+ +G +
Sbjct: 87  FRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSL 119

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL---ETKIKRRTLNPRWNETL 170
           D   + ++VI+   L  KD+ G SDPYV+V L       L   +TK  +++LNP+WNE +
Sbjct: 6   DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 171 YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS----EKP-TFWKALKP 225
            F   P    Q   +   VFD +R +RDD +G+V +PL  +       E+P TF   +  
Sbjct: 66  LFRVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 226 PAKDKC---GELLTSLCYHPSNS 245
           P   K    G L   + Y P N 
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNG 144

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G++  ++ +    + L + +   RNL A   +G SDPYV+++L   ++R  +RKT + K 
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNE--LIGRILLAGKNGSGASETKH 349
            LNPVF++SF F+V   +++  +L+V V +       +  L+G++L+A  +   A     
Sbjct: 70  TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129
Query: 350 WQDM 353
           W D+
Sbjct: 130 WYDL 133

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
           D   L ++V+ A +L A D SG SDP+  + L  D   RL+T    + LNP WN+     
Sbjct: 11  DVGILQVKVLKAADLLAADFSGKSDPFCLLELGND---RLQTHTVYKNLNPEWNKVF--- 64
Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
            FPI+ +   VL + VFD D     D +G+V +PL  +
Sbjct: 65  TFPIKDIHD-VLEVTVFDEDGDKPPDFLGKVAIPLLSI 101

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           +L + +LKA +L A D +GKSDP+    L+ G  R++   T     NLNP +N+ F+F  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPF--CLLELGNDRLQ---THTVYKNLNPEWNKVFTF-- 66
Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRI---LLAGKNG 341
           P + I +  L V V D D     + +G++   LL+ ++G
Sbjct: 67  PIKDIHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           L++ VI A EL A   +G S+PY ++++         T+  + TLNP+WN   +   F I
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWN---FNCQFFI 442
Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           + L   VL L +FD D+FS DD +G   +P+ ++
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 18/83 (21%)
Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           ++IT++ A+ L+AKD  G SDPYV V  Q G+    K++T+    NLNPV+ E+F F   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTV--QVGK---TKKRTKTIYGNLNPVWEENFHF--- 70
Query: 307 WEKIREC-----SLNVMVMDFDN 324
                EC      + V V+D D+
Sbjct: 71  -----ECHNSSDRIKVRVLDEDD 88

>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 118 LILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEG 174
           L + VI A+ L  K  S  T  PYVKV LL +     + +T+I R+TL+P + ++L F+ 
Sbjct: 32  LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE 91
Query: 175 FPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA 227
            P    Q +VL + V+ DY R       G   + L ++DLS     W  L PP+
Sbjct: 92  SP----QGKVLQVIVWGDYGRXDHKCFXGVAQILLEELDLSSXVIGWYKLFPPS 141

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query: 115 NSTLILRVISAKELPAKDMSGTSDPYVKVAL-LPDKKHRLETKIKRRTLNPRWNETLYF- 172
           + TL + ++SAK L   D     DPYV++     D+K  +   +      P WNET  F 
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT---TPEWNETFIFT 65
Query: 173 --EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL--CQVDLSEKPTFWKALKPPAK 228
             EG       +  L   +FD D  + DD++GE  +PL    V+ S  PT +  +K   +
Sbjct: 66  VSEG-------TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD--E 116
Query: 229 DKCGELLTSLCYHPS 243
           +  GE+  +L + PS
Sbjct: 117 EYKGEIWVALSFKPS 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	475
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-118
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-33
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-118
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-37
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-32
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	7e-62
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-36
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-60
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	7e-37
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-59
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-37
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-59
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-39
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	5e-59
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-37
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-57
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-37
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	6e-57
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-40
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-56
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	4e-40
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-56
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-35
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	4e-55
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-36
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-52
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	6e-37
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-51
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-33
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-51
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-37
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	9e-51
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-39
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	8e-50
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-30
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-49
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	8e-35
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-49
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-39
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-47
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-32
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-46
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-29
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-46
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	9e-36
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-44
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-38
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	5e-44
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	9e-39
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-42
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-33
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-39
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-25
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-38
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-38
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	6e-37
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-25
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-36
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	6e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-33
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-24
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-29
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	9e-24
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	1e-26
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-20
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	5e-26
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-21
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-25
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	7e-18
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-24
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	6e-17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-22
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-17
3hph_A	219	Integrase, IN; protein-protein complex, tetramer,	4e-17
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	5e-16
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-13
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	8e-08
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	3e-13
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	7e-08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	5e-13
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	5e-05
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	7e-11
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-05
1c6v_A	164	Protein (SIV integrase); DNA integration, DNA bind	7e-11
1c0m_A	238	Protein (integrase); HIV, X-RAY crystallography, p	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	7e-10
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-08
2x78_A	200	Integrase; viral protein, DNA-directed DNA polyme	2e-09
3l3u_A	163	POL polyprotein; DNA integration, AIDS, integrase,	2e-09
3av9_A	183	Integrase, IN; protein-protein interactions, HIV,	2e-09
3oym_A	395	PFV integrase, P42IN; protein-DNA complex; HET: DN	3e-09
1ex4_A	239	Integrase; SH3-like domain, nonspecific DNA bindin	6e-09
1k6y_A	212	Integrase; HIV-1, domain organization, transferase	4e-08
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	6e-08
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	7e-07
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	1e-05
3f9k_A	210	Integrase; protein-protein complex, AIDS, DNA inte	8e-07
1cxq_A	162	Avian sarcoma virus integrase; mixed beta-sheet su	1e-05
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	3e-05
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	2e-04

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  347 bits (892), Expect = e-118
 Identities = 118/285 (41%), Positives = 173/285 (60%), Gaps = 6/285 (2%)

Query: 97  EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETK 156
           E     G+I F+L Y + +  L++R++ A +LPAKD +G SDPYVK+ LLPD+K + +TK
Sbjct: 1   EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 60

Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP--LCQVDLS 214
           + R+TLNP +NET  F   P+ +L  R LH  V+D+DRFSR D IG+V L   L   +  
Sbjct: 61  VHRKTLNPIFNETFQFSV-PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP 119

Query: 215 EKPTFWKALKPPAKDKC--GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKV 272
                W+ +     +K   GEL  SLCY P+  +LT+T++KA NLKA D+ G SDPYVK 
Sbjct: 120 PDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKA 179

Query: 273 WLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
            L    +R++KRKT I K  LNP +NE+  F+V  E +    L++ V+D+D IG NE+IG
Sbjct: 180 SLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 239

Query: 333 RILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
              + G   +     +HW +M+  PR+ +  WH+L  +  + +F 
Sbjct: 240 VCRV-GPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSFT 283

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  127 bits (320), Expect = 1e-33
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 3/137 (2%)

Query: 94  DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--H 151
           +      ++G+++FSL Y      L + +I A  L A D++G SDPYVK +L+ + +   
Sbjct: 130 EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK 189

Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           + +T IK+ TLNP +NE L F+    + +++  L + V DYD    ++ IG   +     
Sbjct: 190 KRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 248

Query: 212 DLSEKPTFWKALKPPAK 228
           D   +  + + L  P K
Sbjct: 249 DPHGREHWAEMLANPRK 265

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  346 bits (889), Expect = e-118
 Identities = 131/283 (46%), Positives = 189/283 (66%), Gaps = 6/283 (2%)

Query: 99  SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIK 158
           SE +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + ETK+ 
Sbjct: 2   SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH 61

Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPT 218
           R+TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD      
Sbjct: 62  RKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 120

Query: 219 FWKALKPPAK---DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQ 275
            W+ L+   K   +K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L 
Sbjct: 121 EWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 180

Query: 276 FGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRIL 335
              KR++K+KT I K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ 
Sbjct: 181 QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 240

Query: 336 LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHEMQTFLQ 378
           + G N +G +E +HW DM+  PR+ I QWH L+ + E+   L 
Sbjct: 241 V-GYNSTG-AELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLA 281

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  136 bits (344), Expect = 5e-37
 Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 2/148 (1%)

Query: 227 AKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKT 286
             +K G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L   +K+  K +T
Sbjct: 1   GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFET 58

Query: 287 QIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASE 346
           ++ +  LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +          
Sbjct: 59  KVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 118

Query: 347 TKHWQDMITKPRQTIVQWHRLKPDHEMQ 374
           T+ W+D+ +  ++   +   +       
Sbjct: 119 TEEWRDLQSAEKEEQEKLGDICFSLRYV 146

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  123 bits (310), Expect = 3e-32
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 3/123 (2%)

Query: 89  VDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD 148
            D+     E  E +G I FSL Y      L + ++ AK L   D+ G SDPYVK+ L+ +
Sbjct: 123 RDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN 182

Query: 149 KK--HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
            K   + +T IK+ TLNP +NE+  FE  P +++Q   + + V DYD+  ++D+IG+VF+
Sbjct: 183 GKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241

Query: 207 PLC 209
              
Sbjct: 242 GYN 244

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  197 bits (502), Expect = 7e-62
 Identities = 80/137 (58%), Positives = 105/137 (76%)

Query: 94  DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL 153
            ++   EN+G+I FS+ Y+F  STL ++++ A+ELPAKD SGTSDP+VK+ LLPDKKH+L
Sbjct: 4   GSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL 63

Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL 213
           ETK+KR+ LNP WNET  FEGFP +K+  R+L+L V DYDRFSR+D IGEV +PL +VDL
Sbjct: 64  ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123

Query: 214 SEKPTFWKALKPPAKDK 230
           ++  TFWK LKP     
Sbjct: 124 TQMQTFWKDLKPSGPSS 140

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  130 bits (330), Expect = 1e-36
 Identities = 45/137 (32%), Positives = 77/137 (56%), Gaps = 5/137 (3%)

Query: 225 PPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKR 284
             +++  G +  S+ Y+   S LT+ ++KA+ L AKD +G SDP+VK++L   +K   K 
Sbjct: 6   SGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKH--KL 63

Query: 285 KTQIFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343
           +T++ + NLNP +NE+F F   P+EK+ +  L + V+D+D   RN+ IG + +       
Sbjct: 64  ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123

Query: 344 ASETKHWQDMITKPRQT 360
                 W+D+  KP   
Sbjct: 124 TQMQTFWKDL--KPSGP 138

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  193 bits (492), Expect = 4e-60
 Identities = 68/149 (45%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    KR++K+KT I
Sbjct: 9   EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ + G N +G +E +
Sbjct: 69  KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTG-AELR 126

Query: 349 HWQDMITKPRQTIVQWHRLKPDHEMQTFL 377
           HW DM+  PR+ I QWH L+ + E+   L
Sbjct: 127 HWSDMLANPRRPIAQWHTLQVEEEVDAML 155

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  132 bits (333), Expect = 7e-37
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 95  NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HR 152
                E +G I FSL Y      L + ++ AK L   D+ G SDPYVK+ L+ + K   +
Sbjct: 4   GGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 63

Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
            +T IK+ TLNP +NE+  FE  P +++Q   + + V DYD+  ++D+IG+VF+      
Sbjct: 64  KKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 122

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  191 bits (487), Expect = 1e-59
 Identities = 78/138 (56%), Positives = 105/138 (76%), Gaps = 2/138 (1%)

Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK 290
            GELL SLCY+PS + + + ++KARNLKA DI G SDPYVKVWL + +KR+EK+KT   K
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61

Query: 291 CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHW 350
            NLNP+FNESF+F++P EK+RE ++ + VMD D + RN++IG+I L+    SG  E KHW
Sbjct: 62  RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS--WKSGPGEVKHW 119

Query: 351 QDMITKPRQTIVQWHRLK 368
           +DMI +PRQ + QWH+LK
Sbjct: 120 KDMIARPRQPVAQWHQLK 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  133 bits (336), Expect = 2e-37
 Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 3/111 (2%)

Query: 101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIK 158
           + G++  SL Y+   +++I+ +I A+ L A D+ GTSDPYVKV L+   K   + +T  K
Sbjct: 1   SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTK 60

Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLC 209
           +R LNP +NE+  F+  P +KL+   + + V D D+ SR+D IG+++L   
Sbjct: 61  KRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  191 bits (488), Expect = 2e-59
 Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 2/145 (1%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           ++ G++L SL Y      L + +++  +L A D NG SDP+VK+WL+    +  K KTQI
Sbjct: 21  EERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQI 80

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  LNP FNE F +++    + + SL++ V D+D    N+ IG   L G +  G    K
Sbjct: 81  KKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQL-GISAKG-ERLK 138

Query: 349 HWQDMITKPRQTIVQWHRLKPDHEM 373
           HW + +    + I +WH+L+ ++ +
Sbjct: 139 HWYECLKNKDKKIERWHQLQNENHV 163

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  139 bits (353), Expect = 1e-39
 Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 4/130 (3%)

Query: 82  QSRSVSLV-DMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPY 140
            +R ++L  +  ++     E  G+I  SL Y      LI+ +I    L A D +G SDP+
Sbjct: 2   SARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPF 61

Query: 141 VKVALLPD--KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRD 198
           VK+ L PD  KK + +T+IK++TLNP +NE  +++      L  + L + V+DYD    +
Sbjct: 62  VKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSN 120

Query: 199 DSIGEVFLPL 208
           D IG   L +
Sbjct: 121 DYIGGCQLGI 130

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  190 bits (484), Expect = 5e-59
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 2/136 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GELL SLCY  + + LT+ +LKAR+L   D++G SDPYVKV L   +KRI K+KT + KC
Sbjct: 17  GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
             N VFNE F F++P E + E S+  +V+D +   RNE+IGR++L G    G S   HW+
Sbjct: 77  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL-GATAEG-SGGGHWK 134

Query: 352 DMITKPRQTIVQWHRL 367
           ++   PR+ I +WH L
Sbjct: 135 EICDFPRRQIAKWHML 150

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  133 bits (336), Expect = 2e-37
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 3/116 (2%)

Query: 96  TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRL 153
                  G++  SL Y    +TL + V+ A+ LP  D+SG SDPYVKV L   KK   + 
Sbjct: 10  GGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKK 69

Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLC 209
           +T +K+ T N  +NE   F+  P + L+   +   V D +R SR++ IG + L   
Sbjct: 70  KTHVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  185 bits (472), Expect = 2e-57
 Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 90  DMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD- 148
           +    +++ +  +G + FSL YD DNS L   +I AK L   D +G +DPYVK+ LLP  
Sbjct: 3   EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62

Query: 149 -KKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP 207
            K ++L TK  R T NP WNETL + G   + +Q + L + V D D+F  ++ IGE    
Sbjct: 63  SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122

Query: 208 LCQVDLSEKPTFWKALK 224
           L ++  +++  F   L+
Sbjct: 123 LKKLKANQRKNFNICLE 139

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  132 bits (333), Expect = 5e-37
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
              G L  SL Y   NS L  T+++A+ LK  D NG +DPYVK+ L  G  +  K +T+ 
Sbjct: 13  TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKT 72

Query: 289 FKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
            +   NPV+NE+  +  +  E ++  +L + V D D  G NE IG    + K        
Sbjct: 73  LRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRK 132

Query: 348 KHWQD 352
                
Sbjct: 133 NFNIC 137

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  184 bits (470), Expect = 6e-57
 Identities = 64/142 (45%), Positives = 92/142 (64%), Gaps = 3/142 (2%)

Query: 87  SLVDMYIDNTEP--SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVA 144
            ++D  ++  EP   E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV 
Sbjct: 11  GILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVF 70

Query: 145 LLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEV 204
           LLPDKK + ETK+ R+TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE 
Sbjct: 71  LLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEF 129

Query: 205 FLPLCQVDLSEKPTFWKALKPP 226
            +P+  VD       W+ L+  
Sbjct: 130 KVPMNTVDFGHVTEEWRDLQSA 151

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  141 bits (357), Expect = 2e-40
 Identities = 46/137 (33%), Positives = 79/137 (57%), Gaps = 2/137 (1%)

Query: 217 PTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQF 276
            +  +  +P  ++K G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L  
Sbjct: 14  DSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP 73

Query: 277 GEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
            +K+  K +T++ +  LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +
Sbjct: 74  DKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131

Query: 337 AGKNGSGASETKHWQDM 353
                     T+ W+D+
Sbjct: 132 PMNTVDFGHVTEEWRDL 148

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  183 bits (466), Expect = 2e-56
 Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 94  DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL 153
                 E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV LLPDKK + 
Sbjct: 12  ILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 71

Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL 213
           ETK+ R+TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE  +P+  VD 
Sbjct: 72  ETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130

Query: 214 SEKPTFWKALK 224
                 W+ L+
Sbjct: 131 GHVTEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  140 bits (354), Expect = 4e-40
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L   +K+  K +T++
Sbjct: 18  EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKV 75

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            +  LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +          T+
Sbjct: 76  HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 135

Query: 349 HWQDM 353
            W+D+
Sbjct: 136 EWRDL 140

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  182 bits (463), Expect = 5e-56
 Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 8/143 (5%)

Query: 94  DNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPA-------KDMSGTSDPYVKVALL 146
            ++     +G +HFS +YD  ++ L +RVI A++LP        +     S+PYVK+ LL
Sbjct: 4   GSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63

Query: 147 PDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFL 206
           PD+K+  +T +KR+T  P + E   FE  P  + Q R L L V D+D+FSR   IG+V +
Sbjct: 64  PDQKNSKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSV 122

Query: 207 PLCQVDLSEKPTFWKALKPPAKD 229
           PLC+VDL +   +WKAL P    
Sbjct: 123 PLCEVDLVKGGHWWKALIPSGPS 145

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  126 bits (319), Expect = 5e-35
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 11/143 (7%)

Query: 225 PPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKA-------KDINGKSDPYVKVWLQFG 277
             +K + G L  S  Y   ++ LT+ +++AR+L         +     S+PYVK+ L   
Sbjct: 6   SGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD 65

Query: 278 EKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
           +K    ++T + +    PVF E ++F +P+ + +  +L + V+DFD   R+ +IG++ + 
Sbjct: 66  QKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVP 123

Query: 338 GKNGSGASETKHWQDMITKPRQT 360
                       W+ +   P   
Sbjct: 124 LCEVDLVKGGHWWKAL--IPSGP 144

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  179 bits (456), Expect = 4e-55
 Identities = 53/133 (39%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 96  TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSG-TSDPYVKVALLPDKKHRLE 154
           +  S  +G + FSLEY+F+    ++ +  A+ LPA D    TSDPY+K+ +LP+KKH+++
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61

Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
           T++ R+TL+P ++ET  F G P  ++Q   LH  +  +DRFSRDD IGEV +PL  ++LS
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121

Query: 215 -EKPTFWKALKPP 226
             K    + +   
Sbjct: 122 EGKMLMNREIISG 134

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  130 bits (328), Expect = 2e-36
 Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGK-SDPYVKVWLQFGEKRIEKRKTQI 288
             G L  SL Y+       + + +AR L A D     SDPY+K+ +   +K   K KT++
Sbjct: 7   GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRV 64

Query: 289 FKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIG--RILLAGKNGSGAS 345
            +  L+P F+E+F+F  +P+ +I+E +L+  ++ FD   R+++IG   I L+G   S   
Sbjct: 65  LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE-G 123

Query: 346 ETKHWQDMITKPR 358
           +    +++I+ P 
Sbjct: 124 KMLMNREIISGPS 136

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  172 bits (437), Expect = 2e-52
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 5/135 (3%)

Query: 96  TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD-KKHRLE 154
           +       ++H+ L+YD   + L +  + A      +  G  D YV+ ++         +
Sbjct: 6   SGSWNQAPKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQ 62

Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
           T +K+R L+  W E L       ++L +  L L +   DRFSR    GE+ L L    + 
Sbjct: 63  TALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121

Query: 215 EKPTFWKALKPPAKD 229
                W  LK     
Sbjct: 122 LGAAQWGELKTSGPS 136

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  131 bits (332), Expect = 6e-37
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           ++  +L   L Y    + L +T L+A      + +G  D YV+  +        + +T +
Sbjct: 10  NQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGS-VEAQTAL 65

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  L+  + E     +  E++   +L + +   D   R+ + G + L     S      
Sbjct: 66  KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA 125

Query: 349 HWQDMITKPRQT 360
            W ++ T    +
Sbjct: 126 QWGELKTSGPSS 137

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  169 bits (431), Expect = 2e-51
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 13/137 (9%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK-----------KH 151
           G+I   + YD  N  LI+ ++ A+ L  +D +G SDP+VKV LLP +           ++
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           +  TK  +++LNP WN+T+ ++   +++L  + L + V+DYDRFS +D +GEV + L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 212 DLSEKPTFWKALKPPAK 228
              +    W  LK   +
Sbjct: 125 SHLDNTPRWYPLKEQTE 141

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  121 bits (306), Expect = 3e-33
 Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 12/129 (9%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE--------- 282
           GE+   + Y   N  L I +L+ARNL  +D NG SDP+VKV+L  G  ++          
Sbjct: 7   GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 283 KRKTQIFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG 341
           KR+T+  + +LNP +N++  + ++  E++ + +L V V D+D    N+ +G +L+   + 
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 342 SGASETKHW 350
           S    T  W
Sbjct: 125 SHLDNTPRW 133

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  169 bits (430), Expect = 3e-51
 Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 97  EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLE 154
               + GQ+   L +D     LI+ ++ AK+LP+++     +PYVK+  LPD+  K++  
Sbjct: 2   SSGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRR 61

Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS--RDDSIGEVFLPLCQVD 212
           TK  ++TL P+WN+T  +     ++ + R+L + ++D  R      + +GE+ + L    
Sbjct: 62  TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 121

Query: 213 LSEKPTFWKALKPPAK 228
           L ++P  W  L+    
Sbjct: 122 LDDEPH-WYKLQTHDS 136

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  133 bits (338), Expect = 1e-37
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
              G+L   L +      L +T+L A++L +++     +PYVK++         KR+T+ 
Sbjct: 5   SSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT 64

Query: 289 FKCNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGAS 345
            K  L P +N++F ++ V   + RE  L + + D   +    +E +G IL+     +   
Sbjct: 65  VKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILI-ELETALLD 123

Query: 346 ETKHWQDMITKPR 358
           +  HW  + T   
Sbjct: 124 DEPHWYKLQTHDS 136

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  168 bits (428), Expect = 9e-51
 Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--HRLETKIKR 159
           G+I FSL+Y+    +L++ V    +L   D +   S+PYVK  LLPDK    + +T IKR
Sbjct: 10  GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69

Query: 160 RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF 219
            T+NP ++ETL +E  P   L  R L   V+ + RF R+  +GE  + +    L +K   
Sbjct: 70  DTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH 128

Query: 220 WKALKPPAKDK 230
              L      +
Sbjct: 129 CLPLHGKISAE 139

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  138 bits (350), Expect = 2e-39
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 4/141 (2%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQ 287
              G +  SL Y      L + + +   L   D    +S+PYVK +L   + R  KRKT 
Sbjct: 7   FVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTS 66

Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
           I +  +NP+++E+  + +P   + + +L   V      GRN  +G   +   +     + 
Sbjct: 67  IKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKL 126

Query: 348 KHW---QDMITKPRQTIVQWH 365
            H       I+   +     H
Sbjct: 127 DHCLPLHGKISAESEGHHHHH 147

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  165 bits (420), Expect = 8e-50
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 99  SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETK 156
               G +  S+ Y   N TL + V+  K+L  +D     +PYVK  LLPD  K  + +TK
Sbjct: 5   HHGSGAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTK 61

Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
           I R+T NP +NE L + G+  + L+ R L L V   +    +  +G + LPL   +LS++
Sbjct: 62  ISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKE 121

Query: 217 PTFWKALKPP 226
              W  L   
Sbjct: 122 TVKWYQLTAA 131

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  114 bits (287), Expect = 1e-30
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
              G +  S+ Y   N  L I ++  ++L  +D     +PYVK +L     +  KRKT+I
Sbjct: 6   HGSGAVKLSVSYR--NGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKI 62

Query: 289 FKCNLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
            +   NP FNE   ++    E +R+  L + V+  +++  N  +G I L  K+ + + ET
Sbjct: 63  SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKET 122

Query: 348 KHWQDM 353
             W  +
Sbjct: 123 VKWYQL 128

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  164 bits (418), Expect = 1e-49
 Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 5/126 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRR 160
           GQ+   L +D     LI+ ++ AK+LP+++     +PYVK+  LPD+  K++  TK  ++
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS--RDDSIGEVFLPLCQVDLSEKPT 218
           TL P+WN+T  +     ++ + R+L + ++D  R      + +GE+ + L    L ++P 
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124

Query: 219 FWKALK 224
            W  L+
Sbjct: 125 -WYKLQ 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  125 bits (316), Expect = 8e-35
 Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 18/140 (12%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G+L   L +      L +T+L A++L +++     +PYVK++         KR+T+  K 
Sbjct: 5   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64

Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNI--GRNELIGRILLAGKNGSGASETK 348
            L P +N++F ++ V   + RE  L + + D   +    +E +G IL+            
Sbjct: 65  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILI------------ 112

Query: 349 HWQDMITKPRQTIVQWHRLK 368
              ++ T        W++L+
Sbjct: 113 ---ELETALLDDEPHWYKLQ 129

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  164 bits (418), Expect = 2e-49
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 96  TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RL 153
                 +GQI  ++ +    + LI+ V + + L A    G SDPYV++ LLPDK+   R 
Sbjct: 4   GSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR 62

Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDS--IGEVFLPLCQV 211
           +T + ++TLNP ++++  F    + ++Q R L + V +   F   D   +G+V + L   
Sbjct: 63  KTHVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121

Query: 212 DLSEKPTFWKALKPPAKDKCG 232
           +L++  T W  L   +    G
Sbjct: 122 ELAKGWTQWYDLTEDSGPSSG 142

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  139 bits (351), Expect = 1e-39
 Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%)

Query: 224 KPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEK 283
              +    G++  ++ +    + L + +   RNL A   +G SDPYV+++L   ++R  +
Sbjct: 3   SGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGR 61

Query: 284 RKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNE--LIGRILLAGKNG 341
           RKT + K  LNPVF++SF F+V   +++  +L+V V +       +  L+G++L+A  + 
Sbjct: 62  RKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121

Query: 342 SGASETKHWQDMITKP 357
             A     W D+    
Sbjct: 122 ELAKGWTQWYDLTEDS 137

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  160 bits (407), Expect = 1e-47
 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 16/156 (10%)

Query: 99  SENVGQIHFSLEYDFDNS-TLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLE 154
                   F L  D +NS  + +RVI+   L  KD+ G SDPYV+V L          ++
Sbjct: 2   MATCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ 61

Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
           TK  +++LNP+WNE + F   P Q      L   VFD +R +RDD +G+V +PL  +   
Sbjct: 62  TKTIKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTE 117

Query: 215 EKPTF------WKALKPPAKDK--CGELLTSLCYHP 242
                         L P +      G L   + Y P
Sbjct: 118 NPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  120 bits (302), Expect = 2e-32
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 230 KCGELLTSLCYHPSNS-VLTITLLKARNLKAKDINGKSDPYVKVWL-QFGEKRIEKRKTQ 287
            C   +  L     NS ++ + ++    L  KDI G SDPYV+V L       +   +T+
Sbjct: 4   TCAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTK 63

Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA----GKNGSG 343
             K +LNP +NE   F V     ++  L   V D + + R++ +G++ +           
Sbjct: 64  TIKKSLNPKWNEEILFRVH---PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120

Query: 344 ASETKHWQDMITKPRQ 359
                 ++D +  PR 
Sbjct: 121 LERPYTFKDFVLHPRS 136

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  158 bits (400), Expect = 2e-46
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 15/159 (9%)

Query: 111 YDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLP---DKKHRLETKIKRRTLNPRWN 167
           ++ D   + ++VI+   L  KD+ G SDPYV+V L          ++TK  +++LNP+WN
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62

Query: 168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF------WK 221
           E + F   P    Q   +   VFD +R +RDD +G+V +PL  +                
Sbjct: 63  EEILFRVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118

Query: 222 ALKPPAKDK--CGELLTSLCYHPSNSVLTITLLKARNLK 258
            L P +      G L   + Y P N        +A  L+
Sbjct: 119 VLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELE 157

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  112 bits (281), Expect = 3e-29
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWL-QFGEKRIEKRKTQIFKCNLNPVFN 298
           ++    V+ + ++    L  KDI G SDPYV+V L       +   +T+  K +LNP +N
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62

Query: 299 ESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA----GKNGSGASETKHWQDMI 354
           E   F V     +   +   V D + + R++ +G++ +                 ++D +
Sbjct: 63  EEILFRVL---PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119

Query: 355 TKPR 358
             PR
Sbjct: 120 LHPR 123

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  157 bits (398), Expect = 2e-46
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 5/151 (3%)

Query: 77  SSAFMQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGT 136
            S+ +Q    S    +  +   +    +I  +L+YD  N    + +I    L A      
Sbjct: 4   GSSGVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQD 63

Query: 137 SDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD 193
               ++VA+LP  +       T+    +    +NE  +        L  + L + V   D
Sbjct: 64  QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTD 122

Query: 194 RFSRDDSIGEVFLPLCQVDLS-EKPTFWKAL 223
           R   ++ +G   + L +V  S E+ T W  L
Sbjct: 123 RSHLEECLGGAQISLAEVCRSGERSTRWYNL 153

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  129 bits (325), Expect = 9e-36
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKR-KTQIF 289
              +  +L Y   N    I +++  NL A          ++V +    +      +T+  
Sbjct: 29  ATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPL 88

Query: 290 KCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG--RILLAGKNGSGASET 347
             +   VFNE F  ++ +  + + +L V V   D     E +G  +I LA    SG   +
Sbjct: 89  DASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG-ERS 147

Query: 348 KHWQDMI 354
             W +++
Sbjct: 148 TRWYNLL 154

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  150 bits (381), Expect = 5e-44
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 95  NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HR 152
             +  E  G+I+     D     LI+ V  AK L   D +G SDPYVK+ L+PD K   +
Sbjct: 12  ILDSMERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESK 69

Query: 153 LETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
            +TK  + +LNP WNET  F+       + R L + ++D+D  SR+D +G +   + ++ 
Sbjct: 70  QKTKTIKCSLNPEWNETFRFQLKE--SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 127

Query: 213 LSEKPTFWKALKPPAKDK 230
            +     W  L    + +
Sbjct: 128 KAGVDG-WFKLLSQEEGE 144

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  136 bits (345), Expect = 9e-39
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           ++ G +           VL + +  A+NL   D NG SDPYVK+ L    K   K+KT+ 
Sbjct: 17  ERRGRIYIQAHIDRE--VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT 74

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            KC+LNP +NE+F F +  E  ++  L+V + D+D   RN+ +G +          +   
Sbjct: 75  IKCSLNPEWNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK-AGVD 132

Query: 349 HWQDMITK 356
            W  ++++
Sbjct: 133 GWFKLLSQ 140

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  147 bits (372), Expect = 2e-42
 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 10/136 (7%)

Query: 95  NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKK--H 151
            T  +  +G I   +E       L + VI A+ L  K  S  T  PYVKV LL +     
Sbjct: 11  QTLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIA 68

Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQ 210
           + +T+I R+TL+P + ++L F+  P    Q +VL + V+ DY R      +G   + L +
Sbjct: 69  KKKTRIARKTLDPLYQQSLVFDESP----QGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124

Query: 211 VDLSEKPTFWKALKPP 226
           +DLS     W  L PP
Sbjct: 125 LDLSSMVIGWYKLFPP 140

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  122 bits (309), Expect = 3e-33
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 25/151 (16%)

Query: 227 AKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRK 285
           A    G++   +        L + +++AR+L  K        PYVKV+L      I K+K
Sbjct: 14  ATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 71

Query: 286 TQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV-MDFDNIGRNELIG--RILLAGKNGS 342
           T+I +  L+P++ +S  F+      +   L V+V  D+  +     +G  +ILL   +  
Sbjct: 72  TRIARKTLDPLYQQSLVFDES---PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD-- 126

Query: 343 GASETKHWQDMITKPRQTIVQWHRLKPDHEM 373
                             ++ W++L P   +
Sbjct: 127 --------------LSSMVIGWYKLFPPSSL 143

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  137 bits (348), Expect = 3e-39
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
            L + V SA  +P     G  DP V V    +KK   +TK     LNP WNE L F+   
Sbjct: 8   MLRVIVESASNIPKTK-FGKPDPIVSVIFKDEKK---KTKKVDNELNPVWNEILEFDLRG 63

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW----KALKPPAKDKCG 232
           I    S  L + V D++   ++  IG   + L  +   +  +        L    +D   
Sbjct: 64  IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGA 123

Query: 233 ELLTSLCYHP 242
            +   + Y P
Sbjct: 124 TIDLVIGYDP 133

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 99.8 bits (249), Expect = 3e-25
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           +L + +  A N+  K   GK DP V V       + EK+KT+     LNPV+NE   F++
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDL 61

Query: 306 PWEKIRECS-LNVMVMDFDNIGRNELIGRILL 336
               +   S L ++V DF+ IG+N+LIG   +
Sbjct: 62  RGIPLDFSSSLGIIVKDFETIGQNKLIGTATV 93

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  135 bits (343), Expect = 2e-38
 Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 7/147 (4%)

Query: 92  YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--K 149
           +  +    +  G     L  D  +  L+L +I  K L +K   GT DPYVK++L+P+  +
Sbjct: 3   HHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSR 61

Query: 150 KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSR-DDSIGEVFLPL 208
               +T+      +P ++E  +F      +   + L + V++    SR    IG +   +
Sbjct: 62  LRHQKTQTVPDCRDPAFHEHFFFPVQE--EDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119

Query: 209 CQVDLSEKPTF-WKALKPPAKDKCGEL 234
             +   +K    W  L      +   L
Sbjct: 120 KSLLTPDKEISGWYYLLGEHLGRTKHL 146

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  135 bits (341), Expect = 4e-38
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 16/148 (10%)

Query: 226 PAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRK 285
            +    G     L     + VL + +++ + L +K   G  DPYVK+ L   + R+  +K
Sbjct: 8   HSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQK 66

Query: 286 TQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGR-NELIGRILLAGKNGSGA 344
           TQ      +P F+E F F V  E  ++  L V V +  +  R + LIG +    K     
Sbjct: 67  TQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSFGVK----- 120

Query: 345 SETKHWQDMITKPRQTIVQWHRLKPDHE 372
                    +  P + I  W+ L  +H 
Sbjct: 121 --------SLLTPDKEISGWYYLLGEHL 140

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  131 bits (332), Expect = 6e-37
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
           TL + ++SAK L   D     DPYV++      +       +     P WNET  F    
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSE 68

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLT 236
                +  L   +FD D  + DD++GE  +PL  V +              ++  GE+  
Sbjct: 69  ----GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWV 124

Query: 237 SLCYHPSN 244
           +L + PS 
Sbjct: 125 ALSFKPSG 132

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
            L + L+ A+ L+  D     DPYV++      +  +++          P +NE+F F V
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGR 333
                    L   + D D    ++ +G 
Sbjct: 67  S---EGTTELKAKIFDKDVGTEDDAVGE 91

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  128 bits (325), Expect = 5e-36
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
            L ++V+ A +L A D SG SDP+  + L  D+   L+T    + LNP WN+   F    
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKD 70

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELL- 235
           I      VL + VFD D     D +G+V +PL  +   +   +    K   +   G +  
Sbjct: 71  IH----DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYL 126

Query: 236 -TSLCYH 241
              L Y+
Sbjct: 127 EMDLIYN 133

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 96.2 bits (240), Expect = 6e-24
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           +L + +LKA +L A D +GKSDP+  + L  G    ++ +T     NLNP +N+ F+F +
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLEL--GN---DRLQTHTVYKNLNPEWNKVFTFPI 68

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
                    L V V D D     + +G++ +
Sbjct: 69  K---DIHDVLEVTVFDEDGDKPPDFLGKVAI 96

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  121 bits (306), Expect = 2e-33
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 118 LILRVISAKEL---PAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG 174
             + V+ A ++      DM  T DPYV++ +      R  T+     +NP WNET  FE 
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET--FE- 61

Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK 228
           F +   Q  VL + + D + +  D+++G     +  + + EK           +
Sbjct: 62  FILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 114

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 243 SNSVLTITLLKARNLK---AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNE 299
           S+   T+ +L+A  +      D+    DPYV++++        +++T+ F  ++NPV+NE
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVWNE 58

Query: 300 SFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           +F F +   +     L + +MD +    +E +G    
Sbjct: 59  TFEFILDPNQENV--LEITLMDAN-YVMDETLGTATF 92

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score =  111 bits (280), Expect = 1e-29
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 118 LILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           + L V+ AK L  KD     DP+ K+ +    +    T   + TL+P+WN+         
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH-STDTVKNTLDPKWNQHYDLYVGKT 65

Query: 178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSE----KPTFWKALKPPAKDK--- 230
                  + + V+++ +  +    G  FL   ++  +     K T ++ L     +    
Sbjct: 66  DS-----ITISVWNHKKIHKKQGAG--FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDT 118

Query: 231 ---CGELLTSL 238
               G+++ SL
Sbjct: 119 DAVRGQIVVSL 129

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 95.5 bits (238), Expect = 9e-24
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           + +T+L A+NL  KD     DP+ K+ +   +   +   T   K  L+P +N+ +   V 
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVV---DGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRI 334
               +  S+ + V +   I + +  G +
Sbjct: 64  ----KTDSITISVWNHKKIHKKQGAGFL 87

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  104 bits (262), Expect = 1e-26
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           S L + VISAK    K       PYV+V  +  +  +  T+    T +P+W + L     
Sbjct: 36  SQLQITVISAKLKENKKNWFGPSPYVEVT-VDGQSKK--TEKCNNTNSPKWKQPLTVIVT 92

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF---WKALKPPAKDK-- 230
           P+ K     LH  V+ +     D  +G   L + +   S           L+     +  
Sbjct: 93  PVSK-----LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPT 147

Query: 231 --CGELLTSL 238
              G+L   L
Sbjct: 148 ETIGDLSICL 157

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 87.2 bits (216), Expect = 3e-20
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 235 LTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLN 294
           L S+      S L IT++ A+  + K       PYV+V +       + +KT+      +
Sbjct: 26  LGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNS 80

Query: 295 PVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           P + +  +  V         L+  V     +  + L+G   L
Sbjct: 81  PKWKQPLTVIVT----PVSKLHFRVWSHQTLKSDVLLGTAAL 118

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  102 bits (255), Expect = 5e-26
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           + + + V+ A+ L AKD +G+SDPYV V +    K +  TK     LNP W E  +FE  
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFEC- 72

Query: 176 PIQKLQSRVLHLHVFDYD-----------RFSRDDSIGEVFLPLCQVDLSEKPTFWKALK 224
                 S  + + V D D           +   DD +G+  + +    LS +   W  L 
Sbjct: 73  ---HNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR--TLSGEMDVWYNLD 127

Query: 225 PPAKD--KCGELLTSLCY 240
                    G +   +  
Sbjct: 128 KRTDKSAVSGAIRLHISV 145

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 89.5 bits (222), Expect = 2e-21
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 19/106 (17%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
           + ++IT++ A+ L+AKD  G SDPYV V  Q G+    K++T+    NLNPV+ E+F F 
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTV--QVGK---TKKRTKTIYGNLNPVWEENFHFE 71

Query: 305 VPWEKIRECSLNVMVMDFDN-----------IGRNELIGRILLAGK 339
                 R   + V V+D D+              ++ +G+ ++  +
Sbjct: 72  CHNSSDR---IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR 114

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  100 bits (251), Expect = 2e-25
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 25/143 (17%)

Query: 115 NSTLILRVISAKELPAKDMS-----------GTSDPYVKVALLPDKKHRLETKIKRRTLN 163
           N  L +++  A  L     S              DPY+ + +  D     +T  K++T +
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNS 62

Query: 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV--DLSEKPTFWK 221
           P W++    +         R + L VF       DD +    +   ++  + S     W 
Sbjct: 63  PAWHDEFVTD-----VCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117

Query: 222 ALKPPAKDKCGELLTSLCYHPSN 244
            L+P      G++   +    S+
Sbjct: 118 DLEP-----EGKVYVIIDLSGSS 135

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 79.1 bits (195), Expect = 7e-18
 Identities = 21/137 (15%), Positives = 51/137 (37%), Gaps = 31/137 (22%)

Query: 244 NSVLTITLLKARNLKAKDINGK-----------SDPYVKVWLQFGEKRIEKRKTQIFKCN 292
           N +L I + +A +LK    + +            DPY+ + +   + RI   +T   +  
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRI--GQTATKQKT 60

Query: 293 LNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD 352
            +P +++ F  +V         + + V     IG ++ +    +             +++
Sbjct: 61  NSPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTI------------QFEE 104

Query: 353 MITKPRQTIVQWHRLKP 369
           ++    +    W  L+P
Sbjct: 105 LLQNGSRHFEDWIDLEP 121

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 98.9 bits (246), Expect = 1e-24
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 21/125 (16%)

Query: 115 NSTLILRVISAKELPAKDMSG----------TSDPYVKVALLPDKKHRLETKIKRRTLNP 164
           N  L +R+  A  L     S             DPY+ V++  D+    +T  K++T  P
Sbjct: 28  NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKP 85

Query: 165 RWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV----DLSEKPTFW 220
            +NE      F         L L VF       D  +    L   ++      S+    W
Sbjct: 86  TYNEE-----FCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGW 140

Query: 221 KALKP 225
             L+P
Sbjct: 141 VDLEP 145

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 76.9 bits (189), Expect = 6e-17
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 244 NSVLTITLLKARNLKAKDINGK----------SDPYVKVWLQFGEKRIEKRKTQIFKCNL 293
           N  L + + +A  L+    + +           DPY+ V +     ++   +T   +   
Sbjct: 28  NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTN 83

Query: 294 NPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
            P +NE F  NV         L + V     +G +  +    L
Sbjct: 84  KPTYNEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 99.2 bits (246), Expect = 3e-22
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 118 LILRVISAKEL---PAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG 174
             + V+ A ++      DM  T DPYV++ +      R  T+     +NP WNET  FE 
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET--FE- 76

Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGEL 234
           F +   Q  VL + + D +    D+++G     +  + + EK           +      
Sbjct: 77  FILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135

Query: 235 LTSLCYHP 242
           L       
Sbjct: 136 LEVCSCPD 143

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 85.0 bits (209), Expect = 1e-17
 Identities = 25/169 (14%), Positives = 63/169 (37%), Gaps = 8/169 (4%)

Query: 241 HPSNSVLTITLLKARNLK---AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVF 297
           H  +   T+ +L+A  +      D+    DPYV++++        +++T+ F  ++NPV+
Sbjct: 14  HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVW 71

Query: 298 NESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKP 357
           NE+F F +     +E  L + +MD +    +E +G       +     + +         
Sbjct: 72  NETFEFILD--PNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128

Query: 358 RQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVK 406
              +     +    +++  +                   + + ++G   
Sbjct: 129 EMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKN 177

>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A Length = 219

 Score = 79.1 bits (195), Expect = 4e-17
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSY 428
              Q  ++ +G+ H     ++P S    E     +K  L K    +N  +  L     + 
Sbjct: 126 ESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAGTLITL 185

Query: 429 NSTPHTTLGVSPAELHLGRKLKTTFDKLLPN 459
           N      LG SP ++ +  K +    +   +
Sbjct: 186 NIKRKGGLGTSPMDIFIFNKEQQRIQQQSKS 216

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A Length = 152

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN--WNNVDEELLNFSQSY 428
           H ++   + +G++      Y+P S G  E     +K  L         V+  L     S 
Sbjct: 68  HRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQGDCETVEAALSLALVSL 127

Query: 429 NSTPHTTLGVSPAELHLGRK 448
           N       G +P E++L  +
Sbjct: 128 NKKRGGIGGHTPYEIYLESE 147

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 66.9 bits (163), Expect = 1e-13
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           S L + V  AK   A++     + YV + +   +  +  T I  R   P W +   FE  
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKV---QNVK-STTIAVRGSQPSWEQDFMFEIN 57

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF--WKALKPPAKDKCGE 233
            +       L + V++      D  +G V++PL  +  S +     W  L   A     E
Sbjct: 58  RLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 112

Query: 234 LL 235
           + 
Sbjct: 113 IC 114

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 50.0 bits (119), Expect = 8e-08
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 25/129 (19%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
           S+L + + KA+   A++   K + YV + +Q       K  T   +    P + + F F 
Sbjct: 5   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ-----NVKSTTIAVR-GSQPSWEQDFMFE 55

Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQW 364
           +    +    L V V +   +  + ++G + +              + +     +   +W
Sbjct: 56  INRLDL---GLTVEVWN-KGLIWDTMVGTVWIP------------LRTIRQSNEEGPGEW 99

Query: 365 HRLKPDHEM 373
             L     M
Sbjct: 100 LTLDSQAIM 108

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 70.7 bits (172), Expect = 3e-13
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 11/105 (10%)

Query: 110 EYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNET 169
                 + L++    A+ L     +  +D Y+KV           T +     NPRW + 
Sbjct: 388 PRQRGLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFF---GGQEFRTGVVWNNNNPRWTDK 443

Query: 170 LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
           + FE   +       L + V+D D    DD +G      C     
Sbjct: 444 MDFE--NVLLSTGGPLRVQVWDADYGWDDDLLGS-----CDRSPH 481

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 53.8 bits (128), Expect = 7e-08
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 240 YHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNE 299
                + L ++  +A +L        +D Y+KV+        ++ +T +   N NP + +
Sbjct: 389 RQRGLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTD 442

Query: 300 SFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGR 333
              F           L V V D D    ++L+G 
Sbjct: 443 KMDFENVLLSTGG-PLRVQVWDADYGWDDDLLGS 475

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 70.0 bits (170), Expect = 5e-13
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTL---NPRWNETLYF 172
           + L L +I A+ELP K        Y ++ L  D      T  K R+       W E   F
Sbjct: 11  NVLKLWIIEARELPPKK-----RYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63

Query: 173 EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCG 232
              P  +     L+       +  +   +G V +P+  +        W  +  P      
Sbjct: 64  NNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGS 123

Query: 233 ELLTSLCYHPSNS 245
             + S     S  
Sbjct: 124 GGMGSGGGGGSGG 136

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 2/120 (1%)

Query: 241 HPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNES 300
           +  NS     +LK   ++A+++  K   Y ++ L                      + E 
Sbjct: 2   NKDNSRRVDNVLKLWIIEARELPPKKRYYCELCLD-DMLYARTTSKPRSASGDTVFWGEH 60

Query: 301 FSFNVPWEKIR-ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQ 359
           F FN           L           +   +G + +     +G   T+ W  +      
Sbjct: 61  FEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 60.0 bits (145), Expect = 7e-11
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           S L + V  AK   A++     + YV + +   +     T I  R   P W +   FE  
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVES----TTIAVRGSQPSWEQDFMFE-- 64

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTF--WKALKPPAKDKCGE 233
            I +L   +  + V++      D  +G V++PL  +  S +     W  L   A     E
Sbjct: 65  -INRLDLGLT-VEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 121

Query: 234 L 234
           +
Sbjct: 122 I 122

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
           S+L + + KA+   A++   K + YV + +Q       +  T   +    P + + F F 
Sbjct: 14  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ-----NVESTTIAVR-GSQPSWEQDFMFE 64

Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           +      +  L V V +   +  + ++G + +
Sbjct: 65  IN---RLDLGLTVEVWN-KGLIWDTMVGTVWI 92

>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2 Length = 164

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 373 MQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSYNS 430
           ++      G+ H     Y+P S G  E M   +K  + +     N+V+  +L      N 
Sbjct: 77  VKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNH 136

Query: 431 TPHTTLG-VSPAELHLGR 447
                +G ++PAE  +  
Sbjct: 137 KRRGGIGDMTPAERLINM 154

>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A Length = 238

 Score = 61.2 bits (148), Expect = 8e-11
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQ---- 426
              + +L   G++H      +       E    ++K  +R     +   + +  S+    
Sbjct: 81  KSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGEL 140

Query: 427 ------SYNSTPHTTLGVSPAELHLGRKLKT 451
                 + N         +P + H    + T
Sbjct: 141 LAKAMYALNHKERGENTKTPIQKHWRPTVLT 171

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 9e-11
 Identities = 81/553 (14%), Positives = 134/553 (24%), Gaps = 187/553 (33%)

Query: 7   NHAISKLTLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSS-HAMEGA-----IASSSSST 60
           N   +K  +SR   Q   +L  A   +       P        + G+           S 
Sbjct: 123 NQVFAKYNVSRL--QPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 61  PLHNKAVANV---KAGEHPSS----AFMQSRSVSLVDMYIDNTEPSENVGQ-IH------ 106
            +  K    +         S       +Q     +   +   ++ S N+   IH      
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 107 --FSLEYDFDNSTLILR-VISAKELPAKDMS-----GTSDPYVKVALLPDKKHRLETKIK 158
                   ++N  L+L  V +AK   A ++S      T    V   L       +     
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLP--LCQVDLSEK 216
             TL P   E           L  + L     D              LP  +        
Sbjct: 295 SMTLTPD--EVK--------SLLLKYLDCRPQD--------------LPREVLTT----- 325

Query: 217 PTFWKALKPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQF 276
                                   +P      ++++       +D     D +  V    
Sbjct: 326 ------------------------NP----RRLSIIAES---IRDGLATWDNWKHV---- 350

Query: 277 GEKRIEKRKTQIFKC--NLNP-----------VFNESFSFNVP-------W-EKIRECSL 315
                +K  T I      L P           VF  S   ++P       W + I+   +
Sbjct: 351 ---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVM 405

Query: 316 NVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHR--------- 366
            V+         N+L    L+  +              +    +     HR         
Sbjct: 406 VVV---------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 367 -------LKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVK-----RFLRK--- 411
                  L P +  Q F   +G        +H  +    E M          RFL +   
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIG--------HHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 412 ---CNWNNVDEEL-----LNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLL-PNPTC 462
                WN     L     L F + Y         +   +    R +    D L       
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPY---------ICDNDPKYERLVNAILDFLPKIEENL 559

Query: 463 TQNKIPSVSNFAL 475
             +K   +   AL
Sbjct: 560 ICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 50/350 (14%), Positives = 93/350 (26%), Gaps = 106/350 (30%)

Query: 64  NKAVANVKAG--------EHPSSAFMQSRSVSLVDMYIDNTE---PSENVGQIH------ 106
            K V +  +         +H S         SL+  Y+D      P E V   +      
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSI 332

Query: 107 -------------FSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL 153
                             + D  T I+   S   L   +       + ++++ P      
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYR---KMFDRLSVFPP----- 383

Query: 154 ETKIKRRTLNPRWNETLYFEGFPI-QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD 212
              I    L+  W + +  +   +  KL    L           +      + +P   ++
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---------VEKQPKESTISIPSIYLE 434

Query: 213 LSEKPTFWKAL--------KPPAKDKCGELLTS---------LCYHPSNSVLTITLLKAR 255
           L  K     AL          P      +L+           + +H              
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-------------- 480

Query: 256 NLKAKDINGKSDPYVKVWLQFG--EKRIEKRKTQIFKCNLNPVFN---------ESFSFN 304
            LK  +   +   +  V+L F   E++I  R           + N              N
Sbjct: 481 -LKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 305 VPWEKIRECSLNVMVMDF-DNIGRNELIG------RILLAGKNGSGASET 347
            P  +    ++    +DF   I  N +        RI L  ++ +   E 
Sbjct: 538 DPKYERLVNAI----LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 60/249 (24%)

Query: 1   MFDGFKNHAISKLTLSRFLSQSVAQLETAGT-------TVDSNNSKSPVPGSSHAMEGAI 53
            +D +K+    KLT    +  S+  LE A         +V   ++  P    +  +    
Sbjct: 343 TWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP----TILLSLIW 396

Query: 54  ASSSSSTP------LHNKAVANVKAGEHPSSAFMQSRSVSLVDMYIDNTEPSENVGQIHF 107
                S        LH  ++      + P     +  ++S+  +Y++     EN   +H 
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVE----KQP-----KESTISIPSIYLELKVKLENEYALHR 447

Query: 108 SL--EYD----FDNSTLILRVIS-------AKELPAKDMSGTSDPYVKVALLPDKKHR-L 153
           S+   Y+    FD+  LI   +           L   +       +  V L  D   R L
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--D--FRFL 503

Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQS-RVLHLHVFD----YDRFSRDDSIGEVFLPL 208
           E KI+  +    WN +    G  +  LQ  +    ++ D    Y+R      I + FLP 
Sbjct: 504 EQKIRHDSTA--WNAS----GSILNTLQQLKFYKPYICDNDPKYERLVNA--ILD-FLPK 554

Query: 209 CQVDLSEKP 217
            + +L    
Sbjct: 555 IEENLICSK 563

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 56.5 bits (136), Expect = 7e-10
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPV-FNESFSFNV 305
           L + L     L+     G++D   KV       R +   +++ +   +   F+E+F + V
Sbjct: 23  LIVHLKTVSELR-----GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWPV 72

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILLA 337
                R   L + + ++  +  N+LIG   + 
Sbjct: 73  ASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMV 104

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPR-WNETLYFEGF 175
            LI+ + +  EL      G +D   KV           +++     +   ++ET  F  +
Sbjct: 22  ALIVHLKTVSELR-----GRADRIAKVTFRGQSF---YSRVLENCEDVADFDET--FR-W 70

Query: 176 PIQK--LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           P+     ++ VL + +F+Y +   +  IG   + L +V
Sbjct: 71  PVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108

>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A Length = 200

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 373 MQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC------NWNNVDEELLNFSQ 426
              + +  G+       YHP S    E     +KR L K        W    + L     
Sbjct: 86  FAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKW---YDLLPVVQL 142

Query: 427 SYNSTPHTTLGVSPAELHLGRKLKTTFDKLL 457
           + N+T    L  +P +L  G    T F    
Sbjct: 143 ALNNTYSPVLKYTPHQLLFGIDSNTPFANQD 173

>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ... Length = 163

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 372 EMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSYN 429
            ++      G+       Y+P S G  E+M   +K+ + +      ++   +      +N
Sbjct: 76  TVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHN 135

Query: 430 STP-HTTLGVSPAELHLG---RKLKTT 452
                   G S  E  +      ++T 
Sbjct: 136 HKRKGGIGGYSAGERIVDIIATDIQTK 162

>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A Length = 183

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSY 428
             ++      G+       Y+P S G  E+M   +K+ + +      ++   +      +
Sbjct: 95  TTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIH 154

Query: 429 NSTPHTTL-GVSPAELHLG 446
           N      + G S  E  + 
Sbjct: 155 NHKRKGGIGGYSAGERIVD 173

>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 3s3m_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ... Length = 395

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 373 MQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC------NWNNVDEELLNFSQ 426
              + +  G+       YHP S+G  E     +KR L K        W     +LL   Q
Sbjct: 198 FAEWAKERGIHLEFSTPYHPQSSGKVERKHSDIKRLLTKLLVGRPTKW----YDLLPVVQ 253

Query: 427 -SYNSTPHTTLGVSPAELHLGRKLKTTFDK 455
            + N+T    L  +P +L  G    T F  
Sbjct: 254 LALNNTYSPVLKYTPHQLLFGIDSNTPFAN 283

>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A Length = 239

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 344 ASETKHWQDMI---TKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAEN 400
             ET ++   +      +              ++      G+       Y+P S G  E+
Sbjct: 45  GQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVES 104

Query: 401 MVGVVKRFLRKC--NWNNVDEELLNFSQSYNSTPHTTLGVSPAELHLGRKLKTTFDKLLP 458
           M   +K+ + +      ++   +      +N      +G   A   +   + T       
Sbjct: 105 MNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQTKEL 164

Query: 459 NPTCTQNKIPSV 470
               T+ +   V
Sbjct: 165 QKQITKIQNFRV 176

>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A Length = 212

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 372 EMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC--NWNNVDEELLNFSQSYN 429
            ++      G+       Y+P S G  E+M   +K+ + +      ++   +      +N
Sbjct: 125 TVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHN 184

Query: 430 STPH-TTLGVSPAELHLG 446
                   G S  E  + 
Sbjct: 185 KKRKGGIGGYSAGERIVD 202

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFE 173
               L++ VI A EL A   +G S+PY ++++   + +   T+  + TLNP+WN    F 
Sbjct: 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISM-GSQSYT--TRTIQDTLNPKWNFNCQF- 440

Query: 174 GFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
              I+ L   VL L +FD D+FS DD +G   +P+ ++
Sbjct: 441 --FIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKI 476

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 50.7 bits (120), Expect = 7e-07
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 117 TLILRVISAKELPAKDMSGTS--DPYVKVALL---PDKKHRLETKIKRRTLNPRWNETLY 171
            L +R+IS ++LP  + +  S  DP V V +     D   R    I     NPRW+    
Sbjct: 498 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 557

Query: 172 FEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPL 208
              F +      ++   V DYD  S++D IG+  +P 
Sbjct: 558 ---FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPW 591

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 223 LKPPAKDKCGELLTSLCYHPSNSV----LTITLLKARNLKAKDINGKS--DPYVKVWLQF 276
           LKP           S             L + ++  + L   + N  S  DP V V +  
Sbjct: 471 LKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHG 530

Query: 277 GEKRIEKRKTQIFKCN-LNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG 332
             +    R+T +   N  NP ++  F F V    +    +  MV D+D+  +N+ IG
Sbjct: 531 VGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVEDYDSSSKNDFIG 585

>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A Length = 210

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 5/111 (4%)

Query: 342 SGASETKHWQDMITK--PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAE 399
           SG         + ++                 E++     +G+       Y+P S G  E
Sbjct: 94  SGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVE 153

Query: 400 NMVGVVKRFLRKC--NWNNVDEELLNFSQSYNSTPHTTL-GVSPAELHLGR 447
            M   +K  + +     N ++  +L      N      +  ++P+E  +  
Sbjct: 154 AMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPSERLINM 204

>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A Length = 162

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 7/65 (10%), Positives = 19/65 (29%)

Query: 371 HEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNWNNVDEELLNFSQSYNS 430
              + +L   G++H      +       E    ++K  +R     +   + +  S+    
Sbjct: 82  KSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGEL 141

Query: 431 TPHTT 435
                
Sbjct: 142 LAKAM 146

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 120 LRVISAKELPAKDMSG-TSDPYVKVALLPDKKHRLETK----IKRRTLNPRWNETLYFEG 174
           + + +      +   G   +PY  V +   +    E       K+ T+ P W+ T     
Sbjct: 14  IGLSNFDCGSCQSCQGEAVNPYCAVLV--KEYVESENGQMYIQKKPTMYPPWDST----- 66

Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV-----DLSEKPTFWKALKPPAKD 229
           F     + RV+ + V   +     D I E  + L  +       + K   W  LKP    
Sbjct: 67  FDAHINKGRVMQIIVKGKN----VDLISETTVELYSLAERCRKNNGKTEIWLELKP---- 118

Query: 230 KCGELLTSLCYHPSNS 245
             G +L +  Y    S
Sbjct: 119 -QGRMLMNARYFLEMS 133

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 120 LRVISAKELPAKDMSGTSDPYVKVAL--LPDKKHRLETKIKRRTLNPRWNETLYFEGFPI 177
           +   S +    +     + P+  V +      +       K+ T+ P W  T     F  
Sbjct: 10  IAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKST-----FDA 64

Query: 178 QKLQSRVLHLHVFDY-DRFSRDDSIG-EVFLPLCQVDLSEKPTFWKALKPPAKDKCGELL 235
              + RV+ + +    +    + ++G  V    C+ + + K  FW  L+P       ++L
Sbjct: 65  HIYEGRVIQIVLMRAAEEPVSEVTVGVSVLAERCKKN-NGKAEFWLDLQP-----QAKVL 118

Query: 236 TSLCY 240
            S+ Y
Sbjct: 119 MSVQY 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	475
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.94
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.92
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.92
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.91
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.91
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.91
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.91
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.91
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.91
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.9
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.9
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.9
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.9
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.9
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.9
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.9
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.9
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.89
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.89
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.89
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.89
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.89
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.88
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.88
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.87
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.87
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.87
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.87
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.87
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.86
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.86
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.86
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.86
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.86
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.86
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.85
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.85
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.85
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.85
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.85
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.85
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.85
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.84
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.84
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.84
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.83
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.83
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.83
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.83
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.83
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.82
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.82
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.82
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.8
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.8
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.77
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.71
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.7
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.7
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.69
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.68
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.67
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.67
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.67
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.66
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.65
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.63
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.63
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.6
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.59
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.58
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.56
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.51
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.48
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.47
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.44
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.41
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.41
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.4
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.4
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.4
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.39
3oym_A	395	PFV integrase, P42IN; protein-DNA complex; HET: DN	99.28
2x78_A	200	Integrase; viral protein, DNA-directed DNA polyme	99.27
3hph_A	219	Integrase, IN; protein-protein complex, tetramer,	99.14
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.11
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	99.03
1k6y_A	212	Integrase; HIV-1, domain organization, transferase	99.02
3f9k_A	210	Integrase; protein-protein complex, AIDS, DNA inte	99.0
1c6v_A	164	Protein (SIV integrase); DNA integration, DNA bind	98.98
3l3u_A	163	POL polyprotein; DNA integration, AIDS, integrase,	98.98
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.93
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.93
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.92
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.9
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.88
1cxq_A	162	Avian sarcoma virus integrase; mixed beta-sheet su	98.88
1c0m_A	238	Protein (integrase); HIV, X-RAY crystallography, p	98.74
1ex4_A	239	Integrase; SH3-like domain, nonspecific DNA bindin	98.74
3av9_A	183	Integrase, IN; protein-protein interactions, HIV,	98.64
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.22
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.07
1bco_A	327	MUA domain II, bacteriophage MU transposase; polyn	96.73
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.32
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	94.07
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.06
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	93.89
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	93.86
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	90.61
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	90.31
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	87.37
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	86.76
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	81.76

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=1.5e-46  Score=361.56  Aligned_cols=269  Identities=46%  Similarity=0.858  Sum_probs=245.9

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      +..|+|.+++.|+...+.|.|+|++|++|+.++..+.+||||+|++.+++.+.++|+++++++||+|||+|.|. ++..+
T Consensus         3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~-v~~~~   81 (284)
T 2r83_A            3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSE   81 (284)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEEC-CCGGG
T ss_pred             cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEE-echHH
Confidence            45799999999999999999999999999999999999999999998776678899999999999999999998 66666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC---CcccceeeeeeecCCceeEEEEEEeecc
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK---DKCGELLTSLCYHPSNSVLTITLLKARN  256 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~---~~~G~l~l~l~~~~~~~~L~v~v~~a~~  256 (475)
                      +....|+|+|||+|.++++++||++.++|.++..+.....|++|.+..+   ...|+|.+++.|.|..+.|.|.|++|++
T Consensus        82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~  161 (284)
T 2r83_A           82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKN  161 (284)
T ss_dssp             CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEES
T ss_pred             hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCCceEEEEEEeEC
Confidence            6678999999999999999999999999999988888889999987543   4679999999999999999999999999


Q ss_pred             CcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEEE
Q psy15955        257 LKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL  336 (475)
Q Consensus       257 L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i  336 (475)
                      |+..+..+.+||||++++..++....+++|++++++.||.|||+|.|.++.++++...|.|+|||++.++++++||++.|
T Consensus       162 L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i  241 (284)
T 2r83_A          162 LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV  241 (284)
T ss_dssp             CCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEE
T ss_pred             CCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEE
Confidence            99999999999999999987776667889999999999999999999999888887889999999999999999999999


Q ss_pred             cCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955        337 AGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH  371 (475)
Q Consensus       337 ~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~  371 (475)
                      ++...  +.+..||.+|+..|++.+..||+|.+..
T Consensus       242 ~l~~~--~~~~~~w~~~~~~~~~~~~~W~~L~~~~  274 (284)
T 2r83_A          242 GYNST--GAELRHWSDMLANPRRPIAQWHTLQVEE  274 (284)
T ss_dssp             ETTCC--HHHHHHHHHHHHSTTSCEEEEEECBCHH
T ss_pred             CCCCC--CcHHHHHHHHHHCCCCchheeeecCCcc
Confidence            98653  3577899999999999999999998754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1.1e-45  Score=357.10  Aligned_cols=271  Identities=42%  Similarity=0.771  Sum_probs=239.3

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      ...|+|+++++|+...+.|.|+|++|++|+.+|..|.+||||+|++.+++.++++|+++++++||+|||+|.|. ++..+
T Consensus         4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~   82 (296)
T 1dqv_A            4 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLAE   82 (296)
T ss_dssp             CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGGG
T ss_pred             CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEE-ecHHH
Confidence            45799999999999999999999999999999999999999999998777788999999999999999999999 66667


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeec-cccccC-CCCcceeeccCCCCC--CcccceeeeeeecCCceeEEEEEEeec
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLP-LCQVDL-SEKPTFWKALKPPAK--DKCGELLTSLCYHPSNSVLTITLLKAR  255 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~-l~~l~~-~~~~~~~~~L~~~~~--~~~G~l~l~l~~~~~~~~L~v~v~~a~  255 (475)
                      +....|+|+|||+|.++++++||++.++ +.++.. ......|++|.+..+  ...|+|.+++.|.|..+.|.|.|++|+
T Consensus        83 l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~  162 (296)
T 1dqv_A           83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKAS  162 (296)
T ss_dssp             GSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             hcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccceeEEEEEEee
Confidence            6677899999999999999999999996 444432 344568999976432  457999999999999999999999999


Q ss_pred             cCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCCCCeeeEEEE
Q psy15955        256 NLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRIL  335 (475)
Q Consensus       256 ~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~  335 (475)
                      +|+.++..|.+||||++++.++++...+++|++++++.||.|||+|.|.++.+++....|.|+|||++.++++++||.+.
T Consensus       163 ~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~  242 (296)
T 1dqv_A          163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCR  242 (296)
T ss_dssp             SCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECC
T ss_pred             cCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEE
Confidence            99999999999999999987666555678999999999999999999999888877778999999999999999999999


Q ss_pred             EcCcCCCCCcccccccccccCCCcceeeeeccCCCCc
Q psy15955        336 LAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHE  372 (475)
Q Consensus       336 i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~~  372 (475)
                      |++.... ..+..||.+|+..|++.+..||+|.....
T Consensus       243 i~l~~~~-~~~~~~W~~~~~~~~~~~~~w~~L~~~~~  278 (296)
T 1dqv_A          243 VGPEAAD-PHGREHWAEMLANPRKPVEHWHQLVEEKT  278 (296)
T ss_dssp             CSSCTTC-HHHHHHHHTSSSSSSSCSCSCCCCBBCC-
T ss_pred             ECCccCC-chhHHHHHHHHhCCCCceeEeeeccCccc
Confidence            9886542 13678999999999999999999987644

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.94  E-value=5.6e-27  Score=245.77  Aligned_cols=207  Identities=19%  Similarity=0.243  Sum_probs=156.3

Q ss_pred             hHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceee
Q psy15955         14 TLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVD   90 (475)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~   90 (475)
                      ..-+++++++.||||+|+|++|||++|...|...+...+.+=++.   ++...++|..||+||||+||++|+.....+  
T Consensus       406 ~~~~~n~~~l~RvYP~g~R~~SSN~~P~~~W~~G~QmvAlN~Qt~d~~m~ln~g~F~~ng~~GYvlKP~~lr~~~~~f--  483 (624)
T 1djx_A          406 GFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTTF--  483 (624)
T ss_dssp             HHHHHHHHSCEEEECCTTCTTCCCCCSHHHHTTTCCEEEECTTCCSHHHHHHHHHHHSGGGCSEEECCGGGGCTTCCC--
T ss_pred             HHHHHhhhcceeeccCCccCCCCCCCchHHhhccceeeeecccCCchHHhHHHHHhhcCCCCccEECCHHHcCCCCCc--
Confidence            345789999999999999999999999776444444444333222   122347899999999999999998865322  


Q ss_pred             eEeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEeCC--CCceEEeeeecCC-CCce
Q psy15955         91 MYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDM--SGTSDPYVKVALLPD--KKHRLETKIKRRT-LNPR  165 (475)
Q Consensus        91 ~~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~--~~~~~kT~v~~~~-~nP~  165 (475)
                         ++.......|.         ..+.|.|+|++|++|+..+.  .+.+||||+|.+.+.  +..++||++++++ +||+
T Consensus       484 ---~p~~~~~~~~~---------~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~  551 (624)
T 1djx_A          484 ---NSRALTQGPWW---------RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPR  551 (624)
T ss_dssp             ---CTTSCCSSTTC---------CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCE
T ss_pred             ---CcccccccCCc---------cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCc
Confidence               22221111121         35579999999999999884  689999999999543  3457899999997 9999


Q ss_pred             eeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeeee
Q psy15955        166 WNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLCY  240 (475)
Q Consensus       166 w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~~  240 (475)
                      |||+|.|. +...+  ...|+|+|||+|..+++++||++.+||.+|..+   ..|++|....+..  .|.|.+.+.+
T Consensus       552 WnE~f~F~-v~~~e--l~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~  622 (624)
T 1djx_A          552 WDMEFEFE-VTVPD--LALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  622 (624)
T ss_dssp             EEEEEEEE-ESCGG--GCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             cCceEEEE-EecCC--CCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEE
Confidence            99999998 44443  358999999999999999999999999999754   3589997766553  4666666655

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.92  E-value=5.9e-25  Score=187.28  Aligned_cols=137  Identities=57%  Similarity=1.018  Sum_probs=126.4

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      +|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.+....+++|++++++.||.|||+|.|.++..++
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l   81 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL   81 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence            69999999999999999999999999999999999999999999877666678899999999999999999999988888


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      ....|.|+|||++.++++++||++.|++.+  ...+..+|.+++..|++.+..||.|.+
T Consensus        82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~~Wh~L~p  138 (138)
T 3n5a_A           82 RETTIIITVMDKDKLSRNDVIGKIYLSWKS--GPGEVKHWKDMIARPRQPVAQWHQLKA  138 (138)
T ss_dssp             GGEEEEEEEEECCSSSCCEEEEEEEESSSS--CHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CceEEEEEEEECCCCCCCcEEEEEEEcccc--CChHHHHHHHHHhCCCCeEEEEeecCC
Confidence            778899999999999999999999999975  345778999999999999999999964

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.92  E-value=1.9e-24  Score=187.50  Aligned_cols=139  Identities=45%  Similarity=0.782  Sum_probs=121.1

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      ...|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+++....+++|+++++++||+|||+|.|.++..
T Consensus        14 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   93 (153)
T 1w15_A           14 SGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE   93 (153)
T ss_dssp             --CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred             ccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence            46799999999999999999999999999999999999999999998777666688999999999999999999999888


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      ++....|.|+|||++.++++++||++.|++.+  ...+..+|.+++..|++.+..||.|.+
T Consensus        94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~~~~Wh~L~~  152 (153)
T 1w15_A           94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQIAKWHMLCD  152 (153)
T ss_dssp             SSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             HhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCeeeecccccc
Confidence            77777899999999999999999999999976  456788999999999999999999964

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=5.1e-24  Score=182.15  Aligned_cols=130  Identities=62%  Similarity=1.099  Sum_probs=117.3

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      ..+..|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.+++.+++||+++++++||+|||+|.|..++.
T Consensus         8 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   87 (141)
T 2d8k_A            8 SRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY   87 (141)
T ss_dssp             CCCCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred             CCceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCH
Confidence            34568999999999999999999999999999999999999999999987777789999999999999999999985455


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      ..+....|.|+|||+|.++++++||++.++|.++..+.....|++|.+..
T Consensus        88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A           88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            55556789999999999999999999999999998888788999998753

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=179.97  Aligned_cols=133  Identities=29%  Similarity=0.518  Sum_probs=116.4

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGF  175 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~  175 (475)
                      +....|+|+++++|....+.|.|+|++|++|+.++..+ +||||+|++.+++.  .+++|+++++++||+|||+|.|. +
T Consensus         6 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   83 (142)
T 2dmg_A            6 SGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS-V   83 (142)
T ss_dssp             CSCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEEC-C
T ss_pred             CCCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEE-e
Confidence            34568999999999999999999999999999999889 99999999986554  67899999999999999999998 6


Q ss_pred             cccccccceEEEEEEeeCCCCC--CccccceeeccccccCCCCcceeeccCCCCCCccc
Q psy15955        176 PIQKLQSRVLHLHVFDYDRFSR--DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCG  232 (475)
Q Consensus       176 ~~~~~~~~~L~~~V~d~d~~~~--~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G  232 (475)
                      +..++....|.|+|||+|.++.  +++||++.++|.++..+.....|++|.+..+...|
T Consensus        84 ~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~~~~G  142 (142)
T 2dmg_A           84 SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPSSG  142 (142)
T ss_dssp             CHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCSCCCC
T ss_pred             cHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCCCCCC
Confidence            6666666789999999998763  57999999999999887778899999887655444

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.91  E-value=5.8e-24  Score=185.65  Aligned_cols=141  Identities=45%  Similarity=0.832  Sum_probs=128.4

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      ...|+|.+++.|.+..+.|.|.|++|+||+..+..|.+||||++++.+++....+++|++++++.||.|||+|.|.++..
T Consensus         9 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   88 (159)
T 1tjx_A            9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (159)
T ss_dssp             GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             CcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH
Confidence            46799999999999999999999999999999999999999999998776666788999999999999999999999888


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH  371 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~  371 (475)
                      ++....|.|+|||++.++++++||++.|++...  +.+.+||.+++..|++.+..||+|.+..
T Consensus        89 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~--~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A           89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST--GAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC--HHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             HhCCcEEEEEEEECCCCCCCceEEEEEECCCCC--CcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            877778999999999999999999999998654  3577899999999999999999998654

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=187.59  Aligned_cols=126  Identities=21%  Similarity=0.325  Sum_probs=111.8

Q ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC---CceEEeeeecCCCCceeeeeEEeecc
Q psy15955         99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK---KHRLETKIKRRTLNPRWNETLYFEGF  175 (475)
Q Consensus        99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~---~~~~kT~v~~~~~nP~w~e~f~f~~~  175 (475)
                      ....|+|++++.|....+.|.|.|++|++|+++|..|.+||||++++.+..   ..++||+++++++||+|||+|.|. +
T Consensus        26 ~~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~-v  104 (155)
T 2z0u_A           26 AVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS-M  104 (155)
T ss_dssp             --CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEE-C
T ss_pred             cCCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEE-c
Confidence            355799999999999999999999999999999999999999999998732   247899999999999999999999 7


Q ss_pred             cccccccceEEEEEEeeCCCCCCccccceeeccccccC-CCCcceeeccCC
Q psy15955        176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL-SEKPTFWKALKP  225 (475)
Q Consensus       176 ~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~~~~L~~  225 (475)
                      +..++....|+|+|||+|.++++++||++.++|.++.. +.....|++|.+
T Consensus       105 ~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          105 SYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             CHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             CHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            76666677999999999999999999999999999963 566789999863

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.91  E-value=1.3e-23  Score=181.95  Aligned_cols=128  Identities=48%  Similarity=0.876  Sum_probs=115.8

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      .....|+|.+++.|+...+.|.|+|++|++|+..+..+.+||||+|++.+++..+++|+++++++||+|||+|.|. ++.
T Consensus        24 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~  102 (152)
T 1rsy_A           24 EEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPY  102 (152)
T ss_dssp             --CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CCH
T ss_pred             CCCCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEe-ecH
Confidence            4456899999999999999999999999999999999999999999998776778899999999999999999998 666


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      .++....|.|+|||+|.++++++||++.++|.++..+.....|++|.+.
T Consensus       103 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          103 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             HHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            6666689999999999999999999999999999888888899999763

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.91  E-value=1.1e-23  Score=180.51  Aligned_cols=125  Identities=49%  Similarity=0.897  Sum_probs=115.8

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      ...|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.+++..+++|+++++++||+|||+|.|. ++..+
T Consensus        18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~   96 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSE   96 (143)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEEC-CCHHH
T ss_pred             cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEe-ecHhh
Confidence            45799999999999999999999999999999988999999999998777778999999999999999999998 66666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      +....|+|+|||+|.++++++||++.++|.++..+.....|++|.+
T Consensus        97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            6668999999999999999999999999999998888899999976

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=181.88  Aligned_cols=130  Identities=34%  Similarity=0.517  Sum_probs=115.5

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeec
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEG  174 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~  174 (475)
                      ..+.+|+|.++++|....+.|.|+|++|++|+..+ ..+.+||||+|++.+++.  .+++|+++++++||+|||+|.|. 
T Consensus         5 ~~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-   83 (148)
T 3fdw_A            5 NIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE-   83 (148)
T ss_dssp             -CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEE-
T ss_pred             CCccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEE-
Confidence            35678999999999999999999999999999988 678999999999987653  47899999999999999999999 


Q ss_pred             ccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCC
Q psy15955        175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK  228 (475)
Q Consensus       175 ~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~  228 (475)
                      ++..++....|.|+|||+|.++++++||++.++|.++..+.....|++|.+...
T Consensus        84 v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  137 (148)
T 3fdw_A           84 IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS  137 (148)
T ss_dssp             CCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred             eChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCccc
Confidence            776666677899999999999999999999999999988777889999987653

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.90  E-value=4.5e-23  Score=175.47  Aligned_cols=125  Identities=26%  Similarity=0.443  Sum_probs=111.5

Q ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC-CCceEEeeeecCCCCceeeeeEEeecccc
Q psy15955         99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD-KKHRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus        99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      ....|+|++++.|+...+.|.|+|++|+   ++|..|.+||||+|++.+. +..+++|+++++++||+|||+|.|. ++.
T Consensus         9 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~-v~~   84 (138)
T 1wfm_A            9 WNQAPKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-LAE   84 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-CCT
T ss_pred             CCcceEEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEE-ecH
Confidence            3457999999999999999999999999   4677899999999999764 3446799999999999999999999 777


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      .++....|+|+|||+|.++++++||++.++|.++..+.....|++|.+..
T Consensus        85 ~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             HHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            77777899999999999999999999999999998777788999998754

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.90  E-value=1.7e-23  Score=183.96  Aligned_cols=141  Identities=33%  Similarity=0.578  Sum_probs=125.5

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+++....+++|++++++.||+|||+|.|.+..
T Consensus        20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   99 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH   99 (166)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             cCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence            35679999999999999999999999999999999999999999999765544567899999999999999999999988


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                      .++....|.|+|||++.++++++||++.|++.+.  +....+|.+++..+++.+..||.|.+.
T Consensus       100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~~~~~~~~~~Wh~L~~~  160 (166)
T 2cm5_A          100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKKIERWHQLQNE  160 (166)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC--HHHHHHHHHHHHCTTCCEEEEEECBC-
T ss_pred             HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC--CchhHHHHHHHhCCCCcceEeeECCCc
Confidence            7877789999999999999999999999999764  346789999999999999999999754

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.90  E-value=6.7e-23  Score=174.48  Aligned_cols=128  Identities=41%  Similarity=0.804  Sum_probs=113.7

Q ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccc
Q psy15955         99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMS-GTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus        99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      ....|+|.++++|....+.|.|+|++|++|+.++.. +.+||||+|++.+++..+++|+++++++||+|||+|.|..++.
T Consensus         5 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~   84 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY   84 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred             CCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCH
Confidence            355799999999999999999999999999999985 8999999999987666789999999999999999999954666


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCc-ceeeccCCC
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP-TFWKALKPP  226 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~-~~~~~L~~~  226 (475)
                      .++....|.|+|||+|.++++++||++.++|.++..+... ..|++|.+.
T Consensus        85 ~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             TTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             HHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            6666779999999999999999999999999999876554 467888764

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.90  E-value=3.9e-24  Score=229.27  Aligned_cols=195  Identities=19%  Similarity=0.234  Sum_probs=142.3

Q ss_pred             hHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCCCc-------ccccccccCCCCCCCCccccccccc
Q psy15955         14 TLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTP-------LHNKAVANVKAGEHPSSAFMQSRSV   86 (475)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~n~~~g~~~~~~~l~~~~~   86 (475)
                      ..-+++++++.||||+|+|++|||++|...    |..|+++.+-+-+.       ..++|..||+||||+||++|+....
T Consensus       587 ~~~~~n~~~l~RvYP~g~R~~SSN~~P~~~----W~~G~QmVAlN~Qt~d~~m~ln~g~F~~nG~cGYVlKP~~lr~~~~  662 (799)
T 2zkm_X          587 QFVDYNKRQMSRIYPKGTRMDSSNYMPQMF----WNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKHEFMRRPDK  662 (799)
T ss_dssp             HHHHHHHHSEEEEECCTTCTTCCCCCSHHH----HHTTCSEECBCTTCCSHHHHHHHHHTTTGGGCSEEECCGGGTCTTS
T ss_pred             HHHHHhhhcceeeccCCCcCCCCCCCcHHH----HhccceEeeeccccCchHHHHHHhhhhccCCCCceECCHHHhCCCc
Confidence            345789999999999999999999999766    44444444444332       3378999999999999999997543


Q ss_pred             ceeeeEeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--C-CceEEee-eec-CC
Q psy15955         87 SLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--K-KHRLETK-IKR-RT  161 (475)
Q Consensus        87 s~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~-~~~~kT~-v~~-~~  161 (475)
                      .+     ++.......|.         ..+.|.|+|++|++|+.    +.+||||+|.+.+.  + .+++||+ +++ ++
T Consensus       663 ~f-----~p~~~~~~~~~---------~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~  724 (799)
T 2zkm_X          663 QF-----NPFSVDRIDVV---------VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNS  724 (799)
T ss_dssp             CC-----CTTSCCTTTTT---------TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCC
T ss_pred             cC-----CCcccccccce---------eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCC
Confidence            22     22222211221         34579999999999985    46899999999642  2 2467999 776 46


Q ss_pred             CCceeee-eEEe-ecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC--cccceeee
Q psy15955        162 LNPRWNE-TLYF-EGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD--KCGELLTS  237 (475)
Q Consensus       162 ~nP~w~e-~f~f-~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~--~~G~l~l~  237 (475)
                      +||+||| +|.| . +...++  ..|+|+|||+|    +++||++.+||..|..+   ..|++|....+.  ..+.|.+.
T Consensus       725 ~NPvWnEe~f~F~~-v~~~el--~~Lr~~V~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~  794 (799)
T 2zkm_X          725 INPVWKEEPFVFEK-ILMPEL--ASLRVAVMEEG----NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIF  794 (799)
T ss_dssp             SSCBCCCCCEEEEE-ESSGGG--CEEEEEEEETT----TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEE
T ss_pred             CCCeeecceEEEEE-EccCCc--cEEEEEEEEeC----CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEE
Confidence            9999999 6999 6 554544  48999999987    68999999999999653   357788665443  23555555


Q ss_pred             eee
Q psy15955        238 LCY  240 (475)
Q Consensus       238 l~~  240 (475)
                      +.+
T Consensus       795 i~~  797 (799)
T 2zkm_X          795 LEM  797 (799)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=4.1e-23  Score=177.84  Aligned_cols=129  Identities=43%  Similarity=0.771  Sum_probs=113.8

Q ss_pred             CCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeee
Q psy15955         97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAK-DM------SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNET  169 (475)
Q Consensus        97 ~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~-~~------~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~  169 (475)
                      ......|+|.+++.|....+.|.|+|++|++|+.. +.      .+.+||||+|++.+++.++++|+++++++||+|||+
T Consensus         7 ~~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~   86 (147)
T 2enp_A            7 GSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEER   86 (147)
T ss_dssp             SSCCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBC
T ss_pred             CCCCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeee
Confidence            34466899999999999999999999999999984 43      358999999999877667889999999999999999


Q ss_pred             EEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        170 LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       170 f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      |.|. ++..++....|+|+|||+|.++++++||++.++|.++........|+.|.+.
T Consensus        87 f~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A           87 YTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             CEEC-CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEE-eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9998 6655555678999999999999999999999999999887777889999865

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.90  E-value=3.3e-24  Score=229.45  Aligned_cols=196  Identities=19%  Similarity=0.247  Sum_probs=143.9

Q ss_pred             hHHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCCCCc-------ccccccccCCCCCCCCccccccccc
Q psy15955         14 TLSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSSSTP-------LHNKAVANVKAGEHPSSAFMQSRSV   86 (475)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~n~~~g~~~~~~~l~~~~~   86 (475)
                      ..-+++++++.||||+|+|++|||++|...    |..|+++.+-+-+.       ..++|..||+||||+||++|+....
T Consensus       634 ~~~~~n~~~l~RvYP~g~RidSSNy~P~~~----W~~G~QmVALN~QT~d~~m~lN~g~F~~nG~cGYVLKP~~lr~~~~  709 (885)
T 3ohm_B          634 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLF----WNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPEFMRRPDK  709 (885)
T ss_dssp             HHHHHHHHSCEEEECCTTCTTCCCCCTHHH----HTTTCSEECBCTTCCSHHHHHHHHHHTTGGGCSEEECCGGGTCTTC
T ss_pred             HHHHHhhccceeeccCccccCCCCCCchhh----cccCceeeeecCCCCCcccchhhhhhccCCceeeeecCHHHcCCCc
Confidence            345799999999999999999999999766    44444444444332       3478999999999999999987543


Q ss_pred             ceeeeEeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--C-CceEEeeeecC-CC
Q psy15955         87 SLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--K-KHRLETKIKRR-TL  162 (475)
Q Consensus        87 s~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~-~~~~kT~v~~~-~~  162 (475)
                      .+     ++.......|.         ....|.|+|++|++|+..    .+||||+|.+.+.  + ..++||+++.+ ++
T Consensus       710 ~f-----~p~~~~~~~~~---------~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~Ngl  771 (885)
T 3ohm_B          710 SF-----DPFTEVIVDGI---------VANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSF  771 (885)
T ss_dssp             CC-----CTTCSSCCTTC---------CCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSS
T ss_pred             Cc-----CCCcCcccCcc---------cceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCc
Confidence            22     23222222221         234799999999999863    5899999999642  2 23578998875 69


Q ss_pred             Cceeee-eEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeee
Q psy15955        163 NPRWNE-TLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLC  239 (475)
Q Consensus       163 nP~w~e-~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~  239 (475)
                      ||+||| +|.|..+...+  ...|+|+|||+|    +++||++++||..|..+   -.+++|....+..  .|.|.+.+.
T Consensus       772 NPvWnEe~F~F~~V~~pe--la~Lrf~V~D~d----ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~  842 (885)
T 3ohm_B          772 NPVWDEEPFDFPKVVLPT--LASLRIAAFEEG----GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTE  842 (885)
T ss_dssp             SCBCCCCCEEEEEESCGG--GCEEEEEEEETT----TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CCeeccceeEEeeEEcCC--cCEEEEEEEcCC----ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEE
Confidence            999999 69997333344  348999999987    78999999999999754   3467887766543  566666665


Q ss_pred             e
Q psy15955        240 Y  240 (475)
Q Consensus       240 ~  240 (475)
                      +
T Consensus       843 ~  843 (885)
T 3ohm_B          843 A  843 (885)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=6.6e-23  Score=172.40  Aligned_cols=123  Identities=29%  Similarity=0.616  Sum_probs=105.7

Q ss_pred             cccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeeccccc
Q psy15955        101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQ  178 (475)
Q Consensus       101 ~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~  178 (475)
                      ..|+|.++++|+...+.|.|+|++|++|+..+..+.+||||+|++.+++  ..+++|+++++++||+|||+|.|..++..
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            4799999999999999999999999999999999999999999997654  46789999999999999999999854555


Q ss_pred             ccccceEEEEEEeeCCCCC--CccccceeeccccccCCCCcceeeccC
Q psy15955        179 KLQSRVLHLHVFDYDRFSR--DDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       179 ~~~~~~L~~~V~d~d~~~~--~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      ++....|.|+|||+|..++  +++||++.++|.++.... ...|++|+
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            6667899999999999887  999999999999997655 78999984

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.89  E-value=1.3e-22  Score=173.70  Aligned_cols=130  Identities=38%  Similarity=0.626  Sum_probs=113.1

Q ss_pred             CCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeec
Q psy15955         97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEG  174 (475)
Q Consensus        97 ~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~  174 (475)
                      ......|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.++.  ...+||+++++++||+|||+|.|..
T Consensus        10 ~~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~   89 (142)
T 2chd_A           10 DQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG   89 (142)
T ss_dssp             ----CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEES
T ss_pred             CCCCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcc
Confidence            44566899999999999999999999999999999999999999999997643  3578999999999999999999985


Q ss_pred             ccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       175 ~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      ++..++....|+|+|||+|.++++++||++.++|.++..+.....|++|..+
T Consensus        90 ~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A           90 ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             cCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            5555555578999999999999999999999999999988888889988653

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.89  E-value=1e-22  Score=174.08  Aligned_cols=128  Identities=28%  Similarity=0.594  Sum_probs=112.8

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      ...|+|.+++.|....+.|.|+|++|++|+.++..+.+||||+|++.+++  ..+++|+++++++||+|||+|.|..++.
T Consensus         5 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~   84 (141)
T 1v27_A            5 SSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR   84 (141)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence            45799999999999999999999999999999999999999999997643  4577999999999999999999985455


Q ss_pred             cccccceEEEEEEeeCCCCC--CccccceeeccccccCCCCcceeeccCCCCC
Q psy15955        178 QKLQSRVLHLHVFDYDRFSR--DDSIGEVFLPLCQVDLSEKPTFWKALKPPAK  228 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~--~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~  228 (475)
                      .++....|.|+|||+|..++  +++||++.++|.++.... ...|++|.+...
T Consensus        85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~  136 (141)
T 1v27_A           85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDS  136 (141)
T ss_dssp             TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSS
T ss_pred             HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccccc
Confidence            56666899999999999887  999999999999987654 789999987643

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.89  E-value=1.5e-23  Score=223.47  Aligned_cols=198  Identities=19%  Similarity=0.224  Sum_probs=141.2

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccceeee
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVSLVDM   91 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s~~~~   91 (475)
                      .-+++++++.||||+|+|+||||++|...|...+...+.+=++.   ++...++|..||+||||+||++|+.....+   
T Consensus       560 ~v~~n~~~l~RvYP~g~RidSSNy~P~~~W~~G~QmVALN~QT~d~~m~LN~g~F~~nG~cGYVLKP~~lr~~~~~f---  636 (816)
T 3qr0_A          560 FVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQCFDIAMCVNLGVFEYNGCSGYLLKPEFMRKLDKRF---  636 (816)
T ss_dssp             HHHHTTTSCEEEECCTTCTTCCCCCTHHHHTTTCSEECBCTTCCSHHHHHHHHHTTTTTTCSEEECCHHHHCTTCCC---
T ss_pred             HHHhhhcccceeCCCccccCCCCCCchhhcccCceEEeecCcCCChhhhhhhhhhccCCceeeeecChHhcCCCccc---
Confidence            44688999999999999999999999766444444433333222   122347899999999999999998754222   


Q ss_pred             EeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CC--ceEEeeeecC-CCCcee
Q psy15955         92 YIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KK--HRLETKIKRR-TLNPRW  166 (475)
Q Consensus        92 ~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~--~~~kT~v~~~-~~nP~w  166 (475)
                        ++.......|.         ....|.|+|++|++|+..    .+||||+|.+.+.  +.  .++||+++.+ ++||+|
T Consensus       637 --~p~~~~~~~~~---------~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvW  701 (816)
T 3qr0_A          637 --DPFTESTVDGV---------VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYY  701 (816)
T ss_dssp             --CTTCCSCCTTS---------CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBC
T ss_pred             --CCCCCCCcCCc---------cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeE
Confidence              22222221221         234799999999999864    5899999999643  22  4679998875 699999


Q ss_pred             eee-EEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcc--cceeeeee
Q psy15955        167 NET-LYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKC--GELLTSLC  239 (475)
Q Consensus       167 ~e~-f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~--G~l~l~l~  239 (475)
                      ||+ |.|..+...++  ..|+|+|||++    +++||++++||+.|..|   -.+++|....+...  +.|.+.+.
T Consensus       702 NE~~F~F~~v~~pel--a~Lrf~V~D~d----ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~  768 (816)
T 3qr0_A          702 DEKVFVFKKVVLPDL--AVVRIIVSEEN----GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIV  768 (816)
T ss_dssp             CCCCEEEEEESCGGG--CEEEEEEEETT----SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             cCceeEEccccCCCc--cEEEEEEEecC----CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEE
Confidence            998 99973333443  58999999985    68999999999999764   34678876655432  44544443

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.89  E-value=9.9e-23  Score=176.57  Aligned_cols=137  Identities=23%  Similarity=0.354  Sum_probs=115.5

Q ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeeccc
Q psy15955         99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFP  176 (475)
Q Consensus        99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~  176 (475)
                      ....|++.+++.|....+.|.|+|++|++|+..+ .+.+||||+|++.+..  ..+++|+++++++||+|||+|.|. ++
T Consensus        10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~   87 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP-VQ   87 (153)
T ss_dssp             ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEE-CC
T ss_pred             cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEe-cc
Confidence            4557999999999999999999999999999999 6999999999997643  457899999999999999999998 65


Q ss_pred             ccccccceEEEEEEeeCCCCC-CccccceeeccccccC-CCCcceeeccCCCCCCcccceeeee
Q psy15955        177 IQKLQSRVLHLHVFDYDRFSR-DDSIGEVFLPLCQVDL-SEKPTFWKALKPPAKDKCGELLTSL  238 (475)
Q Consensus       177 ~~~~~~~~L~~~V~d~d~~~~-~~~iG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~G~l~l~l  238 (475)
                      ...+. ..|.|+|||+|.+++ +++||++.++|.++.. +.....|++|.+......+.+.+..
T Consensus        88 ~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~~~lkv~~  150 (153)
T 3fbk_A           88 EEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVAR  150 (153)
T ss_dssp             GGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGTCCCBCCC
T ss_pred             cHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhcccccceecc
Confidence            55554 359999999999876 8999999999999974 6677899999987766666666554

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.89  E-value=3.9e-23  Score=176.89  Aligned_cols=127  Identities=35%  Similarity=0.691  Sum_probs=111.7

Q ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC-----------ceEEeeeecCCCCceee
Q psy15955         99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK-----------HRLETKIKRRTLNPRWN  167 (475)
Q Consensus        99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-----------~~~kT~v~~~~~nP~w~  167 (475)
                      +...|+|++++.|.  .+.|.|+|++|++|+.++..|.+||||+|++.+...           .+++|+++++++||+||
T Consensus         3 ~~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn   80 (142)
T 1rh8_A            3 HPITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN   80 (142)
T ss_dssp             CCCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEE
T ss_pred             CCcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCC
Confidence            45689999999997  789999999999999999999999999999975432           24689999999999999


Q ss_pred             eeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        168 ETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       168 e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      |+|.|..++..++....|.|+|||+|.++++++||++.++|.++..+.....|++|.+..
T Consensus        81 e~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             CEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            999997556666667799999999999999999999999999998777778999998753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=1.3e-22  Score=194.58  Aligned_cols=202  Identities=26%  Similarity=0.393  Sum_probs=144.0

Q ss_pred             cccccccchhhHHHHHhhhhhhhccc---CccccCCCCCCCCCCCCCCCCCcccCCCCCCcccccccccCCCCCCCCccc
Q psy15955          4 GFKNHAISKLTLSRFLSQSVAQLETA---GTTVDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAF   80 (475)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~~~~~~   80 (475)
                      -+|++++.+++||.|.|+|.+.+...   ...+....++.+..+.+..++.+...-.....        +.         
T Consensus        55 ~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~--------~~---------  117 (284)
T 2r83_A           55 KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--------GH---------  117 (284)
T ss_dssp             CEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCC--------SS---------
T ss_pred             eEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhccc--------CC---------
Confidence            47899999999999999999987642   23355555555433333333322211100000        00         


Q ss_pred             ccccccceeeeEeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeee
Q psy15955         81 MQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIK  158 (475)
Q Consensus        81 l~~~~~s~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~  158 (475)
                         .......+...........|.|.+++.|.+..+.|.|.|++|++|+..+..+.+||||+|++.+++.  .+++|+++
T Consensus       118 ---~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~  194 (284)
T 2r83_A          118 ---VTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK  194 (284)
T ss_dssp             ---CEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCC
T ss_pred             ---cceeEEEeeccccccccccccEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeecccee
Confidence               0000000001111123457999999999999999999999999999999999999999999976443  35799999


Q ss_pred             cCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccc------------cCCCCcceeeccCCC
Q psy15955        159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV------------DLSEKPTFWKALKPP  226 (475)
Q Consensus       159 ~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l------------~~~~~~~~~~~L~~~  226 (475)
                      ++++||+|||+|.|. ++..++....|.|+|||+|.++++++||++.+++..+            ..+.....|++|.+.
T Consensus       195 ~~t~nP~wne~f~f~-v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          195 KNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             CSCSSCEEEEEEEEE-CCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             cCCCCCEEceeEEEe-CCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            999999999999999 6767776778999999999999999999999999763            123344689988763

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.88  E-value=4.1e-22  Score=168.54  Aligned_cols=123  Identities=33%  Similarity=0.575  Sum_probs=106.2

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CCceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |.+.+.+.|+...+.|.|+|++|++|+. +..+.+||||+|++.++  +..++||+++++++||+|||+|.|..++..++
T Consensus         7 ~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l   85 (134)
T 2b3r_A            7 GSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETL   85 (134)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHH
T ss_pred             ccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHh
Confidence            4455666777789999999999999997 77889999999999765  34578999999999999999999984555566


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      ....|.|+|||+|.++++++||++.++|.++..+.....|++|.+.
T Consensus        86 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           86 RQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             CcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            6679999999999999999999999999999888888899999764

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=175.27  Aligned_cols=125  Identities=17%  Similarity=0.203  Sum_probs=106.1

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCc-eeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      ...|+|++++.|.+..+.|.|.|++|+||++++..|.+||||++++.+.. ....+++|+++++++||+|||+|.|.++.
T Consensus        27 ~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~  106 (155)
T 2z0u_A           27 VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY  106 (155)
T ss_dssp             -CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred             CCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence            46799999999999999999999999999999999999999999997632 22346899999999999999999999988


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCC-CCccccccccc
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGS-GASETKHWQDM  353 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~~~w~~~  353 (475)
                      .++....|.|+|||++.++++++||++.|++.+.. .+....+|+++
T Consensus       107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L  153 (155)
T 2z0u_A          107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL  153 (155)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEc
Confidence            77777889999999999999999999999987653 23333444443

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.87  E-value=1e-21  Score=171.35  Aligned_cols=127  Identities=35%  Similarity=0.637  Sum_probs=110.2

Q ss_pred             CCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeeccc
Q psy15955         99 SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFP  176 (475)
Q Consensus        99 ~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~  176 (475)
                      ....|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.+++.  .+++|+++++++||+|||+|.|. ++
T Consensus         8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~   86 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VP   86 (159)
T ss_dssp             GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CC
T ss_pred             cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEE-cC
Confidence            4568999999999999999999999999999999999999999999975443  46799999999999999999999 66


Q ss_pred             ccccccceEEEEEEeeCCCCCCccccceeeccccc------------cCCCCcceeeccCCC
Q psy15955        177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV------------DLSEKPTFWKALKPP  226 (475)
Q Consensus       177 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l------------~~~~~~~~~~~L~~~  226 (475)
                      ..++....|.|+|||+|.++++++||++.+++..+            ..+.....|++|.+.
T Consensus        87 ~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A           87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             HHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            66666678999999999999999999999999854            233455689988763

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.87  E-value=1.2e-21  Score=166.57  Aligned_cols=120  Identities=37%  Similarity=0.651  Sum_probs=104.0

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      +|+|.+++.|....+.|.|+|++|++|+..+..+.+||||+|++.+.+.  .+++|+++++++||+|||+|.|. ++...
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~~   80 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD-IPTEK   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEE-CCGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEE-CChhh
Confidence            6999999999999999999999999999999999999999999975433  36799999999999999999999 77666


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      +....|.|+|||+|.++++++||++.++|.++.  .....|++|.
T Consensus        81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~  123 (138)
T 3n5a_A           81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMI  123 (138)
T ss_dssp             GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHH
T ss_pred             cCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHH
Confidence            666789999999999999999999999998752  2234455553

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.87  E-value=2.4e-21  Score=170.20  Aligned_cols=113  Identities=36%  Similarity=0.582  Sum_probs=101.7

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGF  175 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~  175 (475)
                      +....|+|.+++.|....+.|.|+|++|++|+..+..|.+||||+|++.+..  ..+++|+++++++||+|||+|.|. +
T Consensus        19 ~~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   97 (166)
T 2cm5_A           19 DIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-I   97 (166)
T ss_dssp             -CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-C
T ss_pred             CcCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEE-c
Confidence            3566899999999999999999999999999999999999999999997643  357899999999999999999999 6


Q ss_pred             cccccccceEEEEEEeeCCCCCCccccceeeccccc
Q psy15955        176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV  211 (475)
Q Consensus       176 ~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l  211 (475)
                      +..++....|.|+|||+|.++++++||++.++|.++
T Consensus        98 ~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A           98 KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             CGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             chHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            666666779999999999999999999999999885

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.86  E-value=3.9e-22  Score=172.91  Aligned_cols=125  Identities=34%  Similarity=0.518  Sum_probs=100.5

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeecc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGF  175 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~  175 (475)
                      .....|+|.++++|....+.|.|+|++|++|+..+..+.+||||+|++.+++..  ++||+++++++||+|||+|.|. +
T Consensus        12 ~~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   90 (153)
T 1w15_A           12 IPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-I   90 (153)
T ss_dssp             ----CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-C
T ss_pred             CCccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEE-C
Confidence            345689999999999999999999999999999999999999999999765433  5799999999999999999999 6


Q ss_pred             cccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       176 ~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      +..++....|.|+|||+|.++++++||++.+++.+  .+.....|++|..
T Consensus        91 ~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  138 (153)
T 1w15_A           91 PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD  138 (153)
T ss_dssp             CSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred             CHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence            66666667899999999999999999999999988  3334456777654

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.7e-21  Score=166.54  Aligned_cols=128  Identities=29%  Similarity=0.476  Sum_probs=110.2

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+..+ +||||++++.+++....+++|++++++.||+|||+|.|.++.
T Consensus         7 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   85 (142)
T 2dmg_A            7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL   85 (142)
T ss_dssp             SCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred             CCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence            3467999999999999999999999999999999888 999999999876655567899999999999999999999987


Q ss_pred             cccccceEEEEEEeccCCCC--CeeeEEEEEcCcCCCCCcccccccccccC
Q psy15955        308 EKIRECSLNVMVMDFDNIGR--NELIGRILLAGKNGSGASETKHWQDMITK  356 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l~~~~~~~~~~~w~~~~~~  356 (475)
                      .++....|.|+|||++.+++  +++||++.|++.+........+|.++...
T Consensus        86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A           86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            77766789999999998764  57999999999776655566677766543

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.86  E-value=2.4e-21  Score=170.95  Aligned_cols=125  Identities=33%  Similarity=0.519  Sum_probs=106.2

Q ss_pred             CCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEeCCCC--ceEEeeeecCCCCceeeeeEEee
Q psy15955         97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDM-SGTSDPYVKVALLPDKK--HRLETKIKRRTLNPRWNETLYFE  173 (475)
Q Consensus        97 ~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~--~~~kT~v~~~~~nP~w~e~f~f~  173 (475)
                      ......|+|.++++|  ..+.|.|+|++|++|+.+|. .+.+||||+|++.+.+.  .++||+++++++||+|||+|.|.
T Consensus        13 ~~~~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~   90 (171)
T 2q3x_A           13 LATPAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD   90 (171)
T ss_dssp             ----CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECS
T ss_pred             CCCCCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEE
Confidence            334567999999999  68999999999999999995 79999999999976443  36799999999999999999998


Q ss_pred             cccccccccceEEEEEE-eeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        174 GFPIQKLQSRVLHLHVF-DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       174 ~~~~~~~~~~~L~~~V~-d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                       ++.   ....|.|+|| |+|.++++++||++.++|.++..+.....|++|.+..
T Consensus        91 -v~~---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A           91 -ESP---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             -SCC---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             -ecC---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence             432   3578999999 9999999999999999999998888888999998753

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=2.6e-21  Score=167.46  Aligned_cols=124  Identities=36%  Similarity=0.618  Sum_probs=107.5

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      ...|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++++.+++.  .+++|++++++.||+|||+|.|.++..
T Consensus        26 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~  103 (152)
T 1rsy_A           26 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYS  103 (152)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             CCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCC--ceEeccccCCCCCCcCcccEEEeecHH
Confidence            467999999999999999999999999999999999999999999876543  467999999999999999999999877


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMI  354 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~  354 (475)
                      ++....|.|+|||++.++++++||++.|++.+...+....+|.++.
T Consensus       104 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  149 (152)
T 1rsy_A          104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  149 (152)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence            7767789999999999999999999999987665444445555543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.86  E-value=1.9e-22  Score=194.29  Aligned_cols=189  Identities=23%  Similarity=0.323  Sum_probs=136.4

Q ss_pred             cccccccchhhHHHHHhhhhhhhccc---CccccCCCCCCCCCCCCCCCCCcccCCCCCCcccccccccCCCCCCCCccc
Q psy15955          4 GFKNHAISKLTLSRFLSQSVAQLETA---GTTVDSNNSKSPVPGSSHAMEGAIASSSSSTPLHNKAVANVKAGEHPSSAF   80 (475)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~~~~~~   80 (475)
                      -+|++++.+++||.|.|+|.+.+...   ...+..+.++.+..+.+..++....+.- .     .....+. +.   .  
T Consensus        56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l-~-----~~~~~~~-~~---~--  123 (296)
T 1dqv_A           56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL-L-----ELAEQPP-DR---P--  123 (296)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCT-T-----GGGSSCS-SC---C--
T ss_pred             eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccc-c-----ccccCCc-cc---e--
Confidence            47999999999999999999987533   2235555566554433333333322100 0     0000000 00   0  


Q ss_pred             ccccccceeeeEeCCCCCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC--ceEEeeee
Q psy15955         81 MQSRSVSLVDMYIDNTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKIK  158 (475)
Q Consensus        81 l~~~~~s~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~  158 (475)
                            ....+. .........|+|.+++.|....+.|.|.|++|++|+.+|..|.+||||+|++.+++.  .++||+++
T Consensus       124 ------~w~~L~-~~~~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~  196 (296)
T 1dqv_A          124 ------LWRDIL-EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK  196 (296)
T ss_dssp             ------CCEECB-CCSSCCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC
T ss_pred             ------eeeccc-cccccccccceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceeccee
Confidence                  000000 011123457999999999999999999999999999999999999999999975442  56899999


Q ss_pred             cCCCCceeeeeEEeecccccccccceEEEEEEeeCCCCCCccccceeecccccc
Q psy15955        159 RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD  212 (475)
Q Consensus       159 ~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~  212 (475)
                      ++++||+|||+|.|. ++...+....|.|+|||+|.++++++||.+.+++.++.
T Consensus       197 ~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          197 KNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             CSCSSCEEEECCCCC-CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             cCCCCCeECceEEEE-cCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence            999999999999998 66666666789999999999999999999999998763

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.86  E-value=9.5e-22  Score=169.43  Aligned_cols=114  Identities=25%  Similarity=0.419  Sum_probs=102.8

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeec
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP  306 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~  306 (475)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+ ..+.+||||++++.+++....+++|++++++.||.|||+|.|.++
T Consensus         6 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~   85 (148)
T 3fdw_A            6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP   85 (148)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeC
Confidence            3567999999999999999999999999999888 688999999999986665456789999999999999999999998


Q ss_pred             ccccccceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955        307 WEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       307 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  341 (475)
                      ..++....|.|+|||++.++++++||++.|++.+.
T Consensus        86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l  120 (148)
T 3fdw_A           86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW  120 (148)
T ss_dssp             STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHH
T ss_pred             hhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccc
Confidence            88877788999999999999999999999987543

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=1.2e-20  Score=160.36  Aligned_cols=122  Identities=19%  Similarity=0.269  Sum_probs=104.6

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      ...|+|++++.|.+..+.|.|.|++|++   ++..|.+||||++++.+++. ..+++|+++++++||+|||+|.|.++..
T Consensus        10 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~-~~~~kT~v~~~tlnP~wnE~f~f~v~~~   85 (138)
T 1wfm_A           10 NQAPKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVLPLAEE   85 (138)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEEECCTT
T ss_pred             CcceEEEEEEEEeCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCC-cccEecccCcCCCCCcCCceEEEEecHH
Confidence            4679999999999999999999999994   67789999999999976433 2467999999999999999999999888


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccc
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMI  354 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~  354 (475)
                      ++....|.|+|||++.++++++||++.+++.+........+|.++.
T Consensus        86 ~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~  131 (138)
T 1wfm_A           86 ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK  131 (138)
T ss_dssp             SSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECC
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCc
Confidence            8877899999999999999999999999997765444455555544

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=5.6e-21  Score=162.98  Aligned_cols=125  Identities=26%  Similarity=0.359  Sum_probs=106.8

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEEEee
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHVFDY  192 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V~d~  192 (475)
                      ..+.|.|+|++|++|+..+. +.+||||+|++.   .++++|+++++++||+|||+|.|. +....+ ....|.|+|||+
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~i~V~d~   79 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK---DEKKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLGIIVKDF   79 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS---SCEEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEEEEEEET
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC---CEeEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEEEEEEEC
Confidence            45689999999999999998 999999999984   457899999999999999999998 433222 357899999999


Q ss_pred             CCCCCCccccceeeccccccCCCCcceeec---cCCCCC-CcccceeeeeeecCC
Q psy15955        193 DRFSRDDSIGEVFLPLCQVDLSEKPTFWKA---LKPPAK-DKCGELLTSLCYHPS  243 (475)
Q Consensus       193 d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~---L~~~~~-~~~G~l~l~l~~~~~  243 (475)
                      |..+++++||++.++|.++..+.....|+.   |....+ ...|+|++++.|.|.
T Consensus        80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred             CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence            999999999999999999988887789988   554433 466999999999874

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.85  E-value=4.2e-21  Score=164.37  Aligned_cols=123  Identities=37%  Similarity=0.628  Sum_probs=107.2

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      ...|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++++.+++.  .+++|++++++.||.|||+|.|.++..
T Consensus        18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~   95 (143)
T 3f04_A           18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCS--CCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred             cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCC--ccEECccCcCCCCCcCcCeEEEeecHh
Confidence            467999999999999999999999999999999999999999999876543  467999999999999999999999877


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      ++....|.|+|||++.++++++||++.|++.+...+....+|.++
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  140 (143)
T 3f04_A           96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL  140 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEEC
T ss_pred             hcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEEC
Confidence            777788999999999999999999999998766554444455443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=5.8e-21  Score=160.47  Aligned_cols=113  Identities=26%  Similarity=0.468  Sum_probs=96.5

Q ss_pred             cccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-eccc
Q psy15955        230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWE  308 (475)
Q Consensus       230 ~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~  308 (475)
                      ..|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|. ++.+
T Consensus         3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            469999999999999999999999999999999999999999999776545567899999999999999999999 4656


Q ss_pred             ccccceEEEEEEeccCCCC--CeeeEEEEEcCcCCC
Q psy15955        309 KIRECSLNVMVMDFDNIGR--NELIGRILLAGKNGS  342 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l~~~~  342 (475)
                      ++....|.|+|||++..++  +++||++.+++.+..
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~  118 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETAL  118 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccC
Confidence            6667789999999999887  999999999886543

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=9.8e-21  Score=163.23  Aligned_cols=124  Identities=33%  Similarity=0.538  Sum_probs=106.3

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGF  175 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~  175 (475)
                      ..+..|+|.++++|  ..+.|.|+|++|++|+..+..+.+||||+|++.+++  ..++||+++++++||+|||+|.|. +
T Consensus        15 ~~~~~G~l~~~l~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v   91 (149)
T 1a25_A           15 SMERRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-L   91 (149)
T ss_dssp             --CTTCEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-C
T ss_pred             CCCcceEEEEEEEe--cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEE-e
Confidence            34567999999999  478999999999999999999999999999997643  457899999999999999999998 4


Q ss_pred             cccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       176 ~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      ...++ ...|.|+|||+|.++++++||++.++|.++..+ ....|++|.+.
T Consensus        92 ~~~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~  140 (149)
T 1a25_A           92 KESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  140 (149)
T ss_dssp             CSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             ccccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence            43333 357999999999999999999999999999765 46789999764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.85  E-value=3.4e-21  Score=162.76  Aligned_cols=123  Identities=29%  Similarity=0.407  Sum_probs=104.9

Q ss_pred             EEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEE
Q psy15955        110 EYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHV  189 (475)
Q Consensus       110 ~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V  189 (475)
                      +|....+.|.|+|++|++|+..+..|.+||||++++.   .+.++|+++++++||+|||+|.|. +.  .. ...|.|+|
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~-~~--~~-~~~l~i~V   79 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG---NDRLQTHTVYKNLNPEWNKVFTFP-IK--DI-HDVLEVTV   79 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET---TEEEECCCCSSCSSCCCCEEEEEE-ES--CT-TCEEEEEE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC---CEEEEeeeecCCCCCccccEEEEE-ec--CC-CCEEEEEE
Confidence            3445677899999999999999999999999999993   357899999999999999999998 33  32 46899999


Q ss_pred             EeeCCCCCCccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeeec
Q psy15955        190 FDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCYH  241 (475)
Q Consensus       190 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~~  241 (475)
                      ||+|..+++++||++.++|.++..+  ...|++|.+..  +...|+|++++.|.
T Consensus        80 ~d~d~~~~~~~lG~~~i~l~~l~~~--~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           80 FDEDGDKPPDFLGKVAIPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEETTEEEEECCBCEEEGGGCCSS--CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EECCCCCCCCeeEEEEEEHHHccCC--CceEEEeecCCCCCccceEEEEEEEEE
Confidence            9999998899999999999999654  35899998654  35789999999875

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=161.54  Aligned_cols=123  Identities=35%  Similarity=0.611  Sum_probs=104.1

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEee-cc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV-PW  307 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v-~~  307 (475)
                      +..|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+++.  .+++|++++++.||+|||+|.|.+ +.
T Consensus        10 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~~   87 (141)
T 2d8k_A           10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPY   87 (141)
T ss_dssp             CCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCS--SEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred             ceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCC--ccEeCceEcCCCCCccccEEEECccCH
Confidence            467999999999999999999999999999999999999999999875443  357999999999999999999984 55


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      +++....|.|+|||++.++++++||++.|++.+...+....+|.++
T Consensus        88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  133 (141)
T 2d8k_A           88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL  133 (141)
T ss_dssp             HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECC
T ss_pred             HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEEC
Confidence            5555678999999999999999999999998766544333444443

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=4.1e-21  Score=164.02  Aligned_cols=115  Identities=25%  Similarity=0.468  Sum_probs=102.2

Q ss_pred             CCCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-e
Q psy15955        227 AKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-V  305 (475)
Q Consensus       227 ~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v  305 (475)
                      .+...|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+++....+++|++++++.||+|||+|.|. +
T Consensus         3 ~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~   82 (141)
T 1v27_A            3 SGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV   82 (141)
T ss_dssp             CCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSC
T ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccC
Confidence            356789999999999999999999999999999999999999999998665444567899999999999999999999 5


Q ss_pred             cccccccceEEEEEEeccCCCC--CeeeEEEEEcCcCC
Q psy15955        306 PWEKIRECSLNVMVMDFDNIGR--NELIGRILLAGKNG  341 (475)
Q Consensus       306 ~~~~l~~~~l~i~V~d~~~~~~--d~~lG~~~i~l~~~  341 (475)
                      +.+++....|.|+|||++.+++  +++||++.|++.+.
T Consensus        83 ~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l  120 (141)
T 1v27_A           83 HRREFRERMLEITLWDQARVREEESEFLGEILIELETA  120 (141)
T ss_dssp             CTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGC
T ss_pred             CHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEcccc
Confidence            6666767789999999999887  99999999988654

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.84  E-value=1.7e-20  Score=159.48  Aligned_cols=115  Identities=30%  Similarity=0.557  Sum_probs=102.6

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccC-CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-e
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDIN-GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-V  305 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v  305 (475)
                      ....|+|.+++.|.+..+.|.|.|++|++|+..+.. +.+||||++++.+++.  .+++|++++++.||+|||+|.|. +
T Consensus         5 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~v   82 (138)
T 1ugk_A            5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGI   82 (138)
T ss_dssp             CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECC
T ss_pred             CCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCC--ceEecCcCcCCCCCcEeeEEEEcCc
Confidence            346799999999999999999999999999999985 8999999999876443  56899999999999999999995 8


Q ss_pred             cccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCC
Q psy15955        306 PWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGA  344 (475)
Q Consensus       306 ~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~  344 (475)
                      +.+++....|.|+|||++.++++++||++.|++.+....
T Consensus        83 ~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A           83 PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             CSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred             CHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCC
Confidence            877777778999999999999999999999999776544

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.84  E-value=9.4e-21  Score=164.15  Aligned_cols=125  Identities=34%  Similarity=0.543  Sum_probs=99.8

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC---ceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEE
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVF  190 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~  190 (475)
                      ..+.|.|+|++|++|+..+..+.+||||+|++.+...   ..++|+++++++||+|||+|.|. +..   ....|+|+||
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~---~~~~l~~~V~   93 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR-VHP---QQHRLLFEVF   93 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEE-ECT---TTCEEEEEEE
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEE-ecC---CCCEEEEEEE
Confidence            4557999999999999999889999999999974432   56799999999999999999998 332   2468999999


Q ss_pred             eeCCCCCCccccceeeccccccCCCCc------ceeeccCCCC--CCcccceeeeeeecC
Q psy15955        191 DYDRFSRDDSIGEVFLPLCQVDLSEKP------TFWKALKPPA--KDKCGELLTSLCYHP  242 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i~l~~l~~~~~~------~~~~~L~~~~--~~~~G~l~l~l~~~~  242 (475)
                      |+|..+++++||++.++|.++..+...      ..|++|.+..  ....|+|++++.|.|
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             ECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            999999999999999999999766543      4899997653  356899999999976

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.84  E-value=9.6e-21  Score=164.02  Aligned_cols=130  Identities=28%  Similarity=0.388  Sum_probs=107.9

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      ....|++.+++.|.+..+.|.|+|++|++|+..+ .+.+||||++++.++.....+++|++++++.||.|||+|.|.++.
T Consensus        10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   88 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE   88 (153)
T ss_dssp             ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred             cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEeccc
Confidence            4578999999999999999999999999999998 689999999999876655567899999999999999999999977


Q ss_pred             cccccceEEEEEEeccCCCC-CeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCCc
Q psy15955        308 EKIRECSLNVMVMDFDNIGR-NELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHE  372 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~-d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~~  372 (475)
                      .++.. .|.|+|||++.+++ +++||++.|++.++.             .++.....|++|.+...
T Consensus        89 ~~~~~-~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~-------------~~~~~~~~W~~L~~~~~  140 (153)
T 3fbk_A           89 EDDQK-RLLVTVWNRASQSRQSGLIGCMSFGVKSLL-------------TPDKEISGWYYLLGEHL  140 (153)
T ss_dssp             GGTTS-EEEEEEEECCSSGGGCEEEEEEEEEHHHHT-------------C--CCEEEEEECBCTTG
T ss_pred             HHhCC-EEEEEEEeCCCCCCCCcEEEEEEEEHHHhc-------------CCCCccccEEECCChhh
Confidence            67654 59999999999877 999999999774322             23456778888876543

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=4.9e-21  Score=160.22  Aligned_cols=121  Identities=24%  Similarity=0.336  Sum_probs=101.7

Q ss_pred             CCEEEEEEEEeecCCCC---CCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEe
Q psy15955        115 NSTLILRVISAKELPAK---DMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFD  191 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d  191 (475)
                      .+.|.|+|++|++|+.+   +..|.+||||++++.+.+..+++|+++++++||+|||+|.|. +.  ......|.|+|||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~--~~~~~~l~i~V~d   78 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LD--PNQENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-EC--TTSCCEEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEE-ec--CCCCCEEEEEEEE
Confidence            45799999999999984   667899999999997554578899999999999999999998 32  2345789999999


Q ss_pred             eCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        192 YDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       192 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      +|..+ +++||++.++|.++..+.....|++|.+   ...|.|+++++..|
T Consensus        79 ~d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~---~~~g~i~~~le~~~  125 (126)
T 1rlw_A           79 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ---VTEMVLEMSLEVAS  125 (126)
T ss_dssp             CCSSC-CEEEEEEEEEGGGSCTTCEEEEEEEETT---TEEEEEEEEEECCC
T ss_pred             CCCCC-CceeEEEEEEHHHccCCCcEEEEEEcCC---CceEEEEEEEEeCC
Confidence            99874 8999999999999988887889999975   35677777776544

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.84  E-value=1.3e-20  Score=159.36  Aligned_cols=111  Identities=27%  Similarity=0.393  Sum_probs=95.4

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-eccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEKI  310 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~l  310 (475)
                      |.+.+.+.|....+.|.|.|++|++|+. +..+.+||||++++.+++....+++|++++++.||+|||+|.|. ++.+++
T Consensus         7 ~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l   85 (134)
T 2b3r_A            7 GSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETL   85 (134)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHH
T ss_pred             ccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHh
Confidence            4455566666677899999999999997 77889999999999876555567899999999999999999999 887777


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      ....|.|+|||++.++++++||++.|++.+...
T Consensus        86 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~  118 (134)
T 2b3r_A           86 RQRELQLSVLSAESLRENFFLGGITLPLKDFNL  118 (134)
T ss_dssp             TTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCT
T ss_pred             CcCEEEEEEEECCCCCCCcEEEEEEEEhhhccC
Confidence            777899999999999999999999998865543

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.83  E-value=1.8e-20  Score=160.14  Aligned_cols=116  Identities=34%  Similarity=0.527  Sum_probs=102.7

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ecc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPW  307 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~  307 (475)
                      ...|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|. ++.
T Consensus        13 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~   92 (142)
T 2chd_A           13 TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE   92 (142)
T ss_dssp             -CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred             CccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCH
Confidence            4679999999999999999999999999999999999999999999765544567899999999999999999998 776


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCC
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGA  344 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~  344 (475)
                      .++....|.|+|||++.++++++||++.|++.+...+
T Consensus        93 ~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~  129 (142)
T 2chd_A           93 EDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN  129 (142)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTT
T ss_pred             HHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCC
Confidence            6665568999999999999999999999998766544

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.83  E-value=3.7e-21  Score=163.22  Aligned_cols=122  Identities=28%  Similarity=0.456  Sum_probs=104.9

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      .+.|.|+|++|++|+..+..+.+||||+|++.   .+.++|++++ +++||+|||+|.|. +.  . ....|+|+|||+|
T Consensus         9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~-v~--~-~~~~l~~~V~d~~   81 (136)
T 1wfj_A            9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT-VS--E-GTTELKAKIFDKD   81 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESS---SCEEECCCCTTCCSSCEEEEEEEEE-EE--S-SCCEEEEEECCSS
T ss_pred             cEEEEEEEEeccCCCCcccCCCcCceEEEEEC---CccceeEeccCCCCCCccCcEEEEE-EC--C-CCCEEEEEEEECC
Confidence            45799999999999999999999999999984   3467999998 89999999999998 33  3 4568999999999


Q ss_pred             CCCCCccccceeeccccc-cCCCCcceeeccCCCCCCcccceeeeeeecCCc
Q psy15955        194 RFSRDDSIGEVFLPLCQV-DLSEKPTFWKALKPPAKDKCGELLTSLCYHPSN  244 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~~~  244 (475)
                      .++++++||++.++|.++ ..+.....|++|. ..+...|+|++++.|.|..
T Consensus        82 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           82 VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETTEEEEEEEEEEEEEECC
T ss_pred             CCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCCccCEEEEEEEEEEeCC
Confidence            999999999999999999 4444457899998 4567889999999998753

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.83  E-value=8.5e-21  Score=163.50  Aligned_cols=115  Identities=22%  Similarity=0.305  Sum_probs=97.4

Q ss_pred             CCEEEEEEEEeecCCCCCC----------CCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccce
Q psy15955        115 NSTLILRVISAKELPAKDM----------SGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRV  184 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~----------~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~  184 (475)
                      .+.|.|+|++|++|+++|.          .+.+||||+|.+.  +.+..||+++++++||+|||+|.|. +.  .  ...
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~--~~~~~kT~v~~ktlnP~WNE~F~f~-v~--~--~~~  100 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD--QVRVGQTSTKQKTNKPTYNEEFCAN-VT--D--GGH  100 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET--TEEEEECCCCSSCSSCEEEEEEEEE-EE--E--ECE
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC--CEeeEEeeecCCCCCCccCcEEEEE-cC--C--CCE
Confidence            4579999999999999883          3679999999993  3345799999999999999999998 32  2  358


Q ss_pred             EEEEEEeeCCCCCCccccceeeccccccCC----CCcceeeccCCCCCCcccceeeeeeec
Q psy15955        185 LHLHVFDYDRFSRDDSIGEVFLPLCQVDLS----EKPTFWKALKPPAKDKCGELLTSLCYH  241 (475)
Q Consensus       185 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~G~l~l~l~~~  241 (475)
                      |.|+|||+|.+++|++||.+.|+|+++..+    .....|++|.+     .|+|++.+++.
T Consensus       101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-----~G~i~l~l~~~  156 (157)
T 2fk9_A          101 LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-----EGKVFVVITLT  156 (157)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-----SCEEEEEEEEC
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-----CcEEEEEEEEE
Confidence            999999999999999999999999998754    45679999964     69999998874

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.83  E-value=2.7e-20  Score=165.13  Aligned_cols=126  Identities=33%  Similarity=0.532  Sum_probs=98.6

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC---ceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEE
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK---HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVF  190 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~---~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~  190 (475)
                      ..+.|.|+|++|++|+..+..+.+||||+|++.+...   .+++|+++++++||+|||+|.|. +..   ....|.|+||
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~---~~~~L~~~V~   81 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR-VLP---QRHRILFEVF   81 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEE-ECT---TTCEEEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEE-EcC---CCCEEEEEEE
Confidence            4668999999999999999999999999999975332   46799999999999999999998 332   2368999999


Q ss_pred             eeCCCCCCccccceeeccccccCCCCc------ceeeccCCCC--CCcccceeeeeeecCC
Q psy15955        191 DYDRFSRDDSIGEVFLPLCQVDLSEKP------TFWKALKPPA--KDKCGELLTSLCYHPS  243 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i~l~~l~~~~~~------~~~~~L~~~~--~~~~G~l~l~l~~~~~  243 (475)
                      |+|.++++++||++.++|.++..+...      ..|++|.+..  +...|+|.+++.|.|.
T Consensus        82 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           82 DENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             ECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             ECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            999999999999999999999766543      1799998643  3467999999999986

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=3.5e-20  Score=159.42  Aligned_cols=113  Identities=27%  Similarity=0.445  Sum_probs=99.0

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCccc-cc------CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceE
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAK-DI------NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESF  301 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~-~~------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f  301 (475)
                      ...|+|.+++.|.+..+.|.|.|++|++|+.. +.      .+.+||||++++.+++.  .+++|++++++.||+|||+|
T Consensus        10 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f   87 (147)
T 2enp_A           10 YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK--NSKQTGVKRKTQKPVFEERY   87 (147)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCS--SCEECCCCCSCSSCCCCBCC
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCC--cceEeecccCCCCCeEeeeE
Confidence            46899999999999999999999999999984 33      35899999999976443  36799999999999999999


Q ss_pred             EEeecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        302 SFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       302 ~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      .|.++..++....|.|+|||++.++++++||++.|++.+...
T Consensus        88 ~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~  129 (147)
T 2enp_A           88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL  129 (147)
T ss_dssp             EECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCT
T ss_pred             EEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCC
Confidence            999987776667899999999999999999999999876544

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=6.8e-20  Score=157.78  Aligned_cols=118  Identities=29%  Similarity=0.479  Sum_probs=101.4

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      .+.|.|+|++|++|+..+..+.+||||++++   +.+.++|+++++++||+|||+|.|. +.  .. ...|.|+|||+|.
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~-~~~l~~~v~d~d~   88 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFE-CH--NS-SDRIKVRVLDEDD   88 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE---TTEEEECCCCCSCSSCEEEEEEEEE-EC--ST-TCEEEEEEEECCC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE---CCEEEECCccCCCCCCCcccEEEEE-ec--CC-CCEEEEEEEECCC
Confidence            5679999999999999999999999999999   4567899999999999999999998 32  22 3689999999998


Q ss_pred             C-----------CCCccccceeeccccccCCCCcceeeccCCCCC--Ccccceeeeeeec
Q psy15955        195 F-----------SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK--DKCGELLTSLCYH  241 (475)
Q Consensus       195 ~-----------~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~G~l~l~l~~~  241 (475)
                      .           +++++||++.++|.++  ......|++|.+...  ...|+|+++++|.
T Consensus        89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           89 DIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             SHHHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             CccccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence            5           7899999999999999  345579999986443  4679999999885

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.82  E-value=1.3e-19  Score=159.83  Aligned_cols=126  Identities=24%  Similarity=0.407  Sum_probs=103.0

Q ss_pred             CCCcccceeeeeeecCCceeEEEEEEeeccCccccc-CCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEee
Q psy15955        227 AKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDI-NGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV  305 (475)
Q Consensus       227 ~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v  305 (475)
                      .....|+|.+++.|  ..+.|.|.|++|++|+.++. .+.+||||++++.+++....+++|++++++.||+|||+|.|.+
T Consensus        14 ~~~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v   91 (171)
T 2q3x_A           14 ATPAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE   91 (171)
T ss_dssp             ---CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS
T ss_pred             CCCCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe
Confidence            34567999999999  57899999999999999985 7899999999998776666788999999999999999999998


Q ss_pred             cccccccceEEEEEE-eccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955        306 PWEKIRECSLNVMVM-DFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH  371 (475)
Q Consensus       306 ~~~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~  371 (475)
                      ...   ...|.|+|| |++.++++++||++.|++.+...+              .....|++|....
T Consensus        92 ~~~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~--------------~~~~~W~~L~~~~  141 (171)
T 2q3x_A           92 SPQ---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLS--------------SMVIGWYKLFPPS  141 (171)
T ss_dssp             CCT---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTT--------------SCEEEEEECBCGG
T ss_pred             cCC---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccC--------------CCcceeEECCCcc
Confidence            643   468999999 999999999999999988654432              2345666666544

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.82  E-value=1.6e-20  Score=159.22  Aligned_cols=117  Identities=21%  Similarity=0.323  Sum_probs=98.2

Q ss_pred             CCEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccc
Q psy15955        115 NSTLILRVISAKELPAKDMSGT-----------SDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSR  183 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~-----------~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~  183 (475)
                      .+.|.|+|++|++|++.|..+.           +||||+|++  ++....+|+++.+++||+|||+|.|. +.  ..  .
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l--~~~~~~~T~~~~~t~nP~WnE~f~f~-v~--~~--~   77 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPAWHDEFVTD-VC--NG--R   77 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEE-EE--EE--C
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEE--CCeEeeeeeEECCCcCCccCCEEEEE-ec--CC--C
Confidence            4579999999999998885444           999999998  33445799999999999999999998 33  22  6


Q ss_pred             eEEEEEEeeCCCCCCccccceeeccccccCCCC--cceeeccCCCCCCcccceeeeeeecCC
Q psy15955        184 VLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK--PTFWKALKPPAKDKCGELLTSLCYHPS  243 (475)
Q Consensus       184 ~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~G~l~l~l~~~~~  243 (475)
                      .|.|+|||+|..++|++||++.++|.++..+..  ...|++|.+     .|+|++.++|.+.
T Consensus        78 ~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-----~G~i~l~l~~~~~  134 (136)
T 1gmi_A           78 KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-----EGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-----SCEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-----CeEEEEEEEEEec
Confidence            899999999999999999999999999976543  378999864     6999999998654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=1.9e-20  Score=160.07  Aligned_cols=112  Identities=34%  Similarity=0.565  Sum_probs=97.5

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCcee---------eeeeecccccCCCCCeecc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKR---------IEKRKTQIFKCNLNPVFNE  299 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---------~~~~~T~~~~~t~nP~w~e  299 (475)
                      ...|+|.+++.|.  .+.|.|.|++|++|+..+..|.+||||++++......         ..+++|++++++.||.|||
T Consensus         4 ~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T 1rh8_A            4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence            4579999999998  6799999999999999999999999999998654321         2357999999999999999


Q ss_pred             eEEEe-ecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        300 SFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       300 ~f~f~-v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      +|.|. ++.+++....|.|+|||++.++++++||++.|++.+..
T Consensus        82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~  125 (142)
T 1rh8_A           82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS  125 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCG
T ss_pred             EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccc
Confidence            99997 77766667789999999999999999999999886544

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.80  E-value=1.6e-19  Score=152.30  Aligned_cols=120  Identities=22%  Similarity=0.289  Sum_probs=98.2

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      ...|.|+|++|++|++.|..|.+||||+|++.+. .+.++|+++++++||+|||+|.|. +  ...  ..|.|+|||+|.
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t~nP~wne~f~f~-v--~~~--~~l~~~v~d~d~   77 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNTLDPKWNQHYDLY-V--GKT--DSITISVWNHKK   77 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSCSSCEEEEEEEEE-E--ETT--CCEEEEEEEGGG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCCCCCCccCEEEEE-e--CCC--CEEEEEEEECCC
Confidence            3479999999999999999999999999999543 467899999999999999999998 3  232  359999999998


Q ss_pred             CCC---Cccccceeeccccc-cCCCCcceeeccCCCCC----Ccccceeeeeee
Q psy15955        195 FSR---DDSIGEVFLPLCQV-DLSEKPTFWKALKPPAK----DKCGELLTSLCY  240 (475)
Q Consensus       195 ~~~---~~~iG~~~i~l~~l-~~~~~~~~~~~L~~~~~----~~~G~l~l~l~~  240 (475)
                      .++   +++||++.+++.++ ........|++|.....    ...|+|.+++++
T Consensus        78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           78 IHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence            876   79999999999988 44444468888876422    357999988764

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=2.2e-19  Score=154.74  Aligned_cols=110  Identities=33%  Similarity=0.504  Sum_probs=96.2

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      ...|+|.+++.|.  .+.|.|+|++|++|+..+..+.+||||++++..++....+++|++++++.||.|||+|.|.+...
T Consensus        17 ~~~G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   94 (149)
T 1a25_A           17 ERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES   94 (149)
T ss_dssp             CTTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSG
T ss_pred             CcceEEEEEEEec--CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccc
Confidence            4579999999995  57899999999999999999999999999997655445678999999999999999999999765


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  341 (475)
                      ++ ...|.|+|||++.++++++||++.|++.+.
T Consensus        95 ~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l  126 (149)
T 1a25_A           95 DK-DRRLSVEIWDWDLTSRNDFMGSLSFGISEL  126 (149)
T ss_dssp             GG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred             cC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHh
Confidence            54 357999999999999999999999987543

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=5.1e-19  Score=155.80  Aligned_cols=121  Identities=23%  Similarity=0.231  Sum_probs=97.4

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      ..+.|.|+|++|++|+..+..+.+||||+|++.   .+++||+++++++||+|||+|.|. +  ..  ...|.|+|||+|
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~---~~~~kT~v~~~tlnP~Wne~f~f~-v--~~--~~~L~~~V~D~d  105 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVD---GQSKKTEKCNNTNSPKWKQPLTVI-V--TP--VSKLHFRVWSHQ  105 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEET---TEEEECCCCSSCSSCEEEEEEEEE-E--CT--TCEEEEEEEECC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEEC---CEEeEccccCCCCCCeECCEEEEE-e--CC--CCEEEEEEEECC
Confidence            345799999999999944434459999999994   378899999999999999999998 3  22  578999999999


Q ss_pred             CCCCCccccceeeccccccCCCC-----cceeeccCCCC--CCcccceeeeeeecC
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEK-----PTFWKALKPPA--KDKCGELLTSLCYHP  242 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~--~~~~G~l~l~l~~~~  242 (475)
                      .++++++||++.++|.++..+..     ...|++|....  ....|+|.+.++|.+
T Consensus       106 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~  161 (173)
T 2nq3_A          106 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  161 (173)
T ss_dssp             SSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             CCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence            99999999999999999864322     25699997652  246799999998763

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=5.4e-17  Score=138.12  Aligned_cols=104  Identities=34%  Similarity=0.512  Sum_probs=87.5

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc-ccceEEEEEEe
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI-RECSLNVMVMD  321 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l-~~~~l~i~V~d  321 (475)
                      ..+.|.|+|++|++|+..+. +.+||||++++.  +   .+++|++++++.||+|||+|.|.+...++ ....|.|+|||
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~--~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d   78 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK--D---EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKD   78 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS--S---CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEE
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC--C---EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEE
Confidence            45789999999999999998 999999999874  2   35799999999999999999999875443 34689999999


Q ss_pred             ccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955        322 FDNIGRNELIGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       322 ~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      ++.++++++||++.|++.++..+.....|.+
T Consensus        79 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~  109 (140)
T 2dmh_A           79 FETIGQNKLIGTATVALKDLTGDQSRSLPYK  109 (140)
T ss_dssp             TTCSSSCCCCEEEEEEGGGTCSSSCEEEEEE
T ss_pred             CCCCCCCceEEEEEEEHHHhccCCCceeEEe
Confidence            9999999999999999877665555555655

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.70  E-value=5.5e-17  Score=136.76  Aligned_cols=98  Identities=29%  Similarity=0.377  Sum_probs=85.8

Q ss_pred             eeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEE
Q psy15955        237 SLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLN  316 (475)
Q Consensus       237 ~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~  316 (475)
                      ++.|.+..+.|.|+|++|++|+..+..|.+||||++++.  +   .+++|++++++.||.|||+|.|.+...   ...|.
T Consensus         5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~---~~~l~   76 (133)
T 2ep6_A            5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG--N---DRLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLE   76 (133)
T ss_dssp             CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET--T---EEEECCCCSSCSSCCCCEEEEEEESCT---TCEEE
T ss_pred             cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC--C---EEEEeeeecCCCCCccccEEEEEecCC---CCEEE
Confidence            456788899999999999999999999999999999873  2   256899999999999999999998732   35799


Q ss_pred             EEEEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        317 VMVMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       317 i~V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |+|||++..+++++||++.+++.+..
T Consensus        77 i~V~d~d~~~~~~~lG~~~i~l~~l~  102 (133)
T 2ep6_A           77 VTVFDEDGDKPPDFLGKVAIPLLSIR  102 (133)
T ss_dssp             EEEEEEETTEEEEECCBCEEEGGGCC
T ss_pred             EEEEECCCCCCCCeeEEEEEEHHHcc
Confidence            99999999989999999999886654

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.70  E-value=2.5e-17  Score=135.93  Aligned_cols=121  Identities=17%  Similarity=0.272  Sum_probs=104.2

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      --|.|.|.+|.+|+     +++|||+++.+   .+.++||++++ ++.||+|||.|.|. +.-.......|.|.|+|+++
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~F---Rg~k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~d~~~   91 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTF---RGQSFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIFNYSK   91 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEE---TTEEEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEEEECT
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEE---eccceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEEECcc
Confidence            35999999999999     57999999999   56789999998 69999999999998 55555567899999999999


Q ss_pred             CCCCccccceeeccccccCCCCcceeeccCCCCCC-cccceeeeeeecCCce
Q psy15955        195 FSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD-KCGELLTSLCYHPSNS  245 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~-~~G~l~l~l~~~~~~~  245 (475)
                      ++++.+||++.++|.++...+....+..|.+.+.. ..++|.+.++|.|..+
T Consensus        92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A           92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             TSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred             ccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCCC
Confidence            99999999999999999877766677777766554 3489999999998754

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.69  E-value=6.9e-17  Score=139.03  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=86.5

Q ss_pred             CCceeEEEEEEeeccCcccccC----------CCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccc
Q psy15955        242 PSNSVLTITLLKARNLKAKDIN----------GKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIR  311 (475)
Q Consensus       242 ~~~~~L~v~v~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~  311 (475)
                      ...+.|.|+|++|++|+++|..          +.+||||++++  ++.  .+.+|+++++++||.|||+|.|.+..    
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l--~~~--~~~kT~v~~ktlnP~WNE~F~f~v~~----   97 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQV--RVGQTSTKQKTNKPTYNEEFCANVTD----   97 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEE--TTE--EEEECCCCSSCSSCEEEEEEEEEEEE----
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEE--CCE--eeEEeeecCCCCCCccCcEEEEEcCC----
Confidence            4568999999999999988832          67999999987  232  34689999999999999999999863    


Q ss_pred             cceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccC--CCcceeeeeccCC
Q psy15955        312 ECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITK--PRQTIVQWHRLKP  369 (475)
Q Consensus       312 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~--p~~~~s~w~~L~~  369 (475)
                      ...|.|+|||++.+++|++||++.|++.+            +...  ++.....|++|.+
T Consensus        98 ~~~L~~~V~D~d~~~~dd~iG~~~i~l~~------------l~~~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A           98 GGHLELAVFHETPLGYDHFVANCTLQFQE------------LLRTTGASDTFEGWVDLEP  145 (157)
T ss_dssp             ECEEEEEEEECCSSSSCEEEEEEEEEHHH------------HHHHHTTCSEEEEEEECBS
T ss_pred             CCEEEEEEEECCCCCCCCEEEEEEEEHHH------------hhcccCCCCcccEEEECCC
Confidence            24799999999999999999999997633            2222  3456678888865

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.68  E-value=4.8e-16  Score=134.33  Aligned_cols=99  Identities=26%  Similarity=0.364  Sum_probs=79.0

Q ss_pred             CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCc-eeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955        242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       242 ~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      +..+.|.|+|++|++|+..+..+.+||||++++.... ....+++|++++++.||.|||+|.|.+...   ...|.|+||
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V~   93 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVF   93 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEEE
Confidence            4578999999999999999989999999999987432 234678999999999999999999998753   357999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      |++.++++++||++.|++.+...
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~  116 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPT  116 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCB
T ss_pred             ECCCCcCCCeeEEEEEEHHHccc
Confidence            99999999999999999876543

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.67  E-value=1.4e-16  Score=132.95  Aligned_cols=104  Identities=22%  Similarity=0.383  Sum_probs=82.8

Q ss_pred             ceeEEEEEEeeccCcc---cccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955        244 NSVLTITLLKARNLKA---KDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      .+.|.|+|++|++|+.   .+..|.+||||++++.+..  ..+++|++++++.||.|||+|.|.+...+  ...|.|+||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~   77 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEEECTTS--CCEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC--CceEEccccCCCCCCcccceEEEEecCCC--CCEEEEEEE
Confidence            4789999999999998   4667899999999875432  25679999999999999999999985433  457999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCCCCcccccccc
Q psy15955        321 DFDNIGRNELIGRILLAGKNGSGASETKHWQD  352 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~  352 (475)
                      |++..+ +++||++.+++.+...+.....|..
T Consensus        78 d~d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~  108 (126)
T 1rlw_A           78 DANYVM-DETLGTATFTVSSMKVGEKKEVPFI  108 (126)
T ss_dssp             ECCSSC-CEEEEEEEEEGGGSCTTCEEEEEEE
T ss_pred             ECCCCC-CceeEEEEEEHHHccCCCcEEEEEE
Confidence            999874 8999999998866544333333433

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.67  E-value=2.3e-16  Score=133.49  Aligned_cols=106  Identities=18%  Similarity=0.316  Sum_probs=84.7

Q ss_pred             ceeEEEEEEeeccCcccccCCC-----------ccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccccc
Q psy15955        244 NSVLTITLLKARNLKAKDINGK-----------SDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRE  312 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~-----------~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~  312 (475)
                      .+.|.|+|++|++|++.+..++           +||||++++  ++.  ...+|++++++.||.|||+|.|.+...    
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l--~~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~----   76 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDS--RIGQTATKQKTNSPAWHDEFVTDVCNG----   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTE--EEEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEE--CCe--EeeeeeEECCCcCCccCCEEEEEecCC----
Confidence            5789999999999999886544           999999987  332  346899999999999999999998643    


Q ss_pred             ceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        313 CSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       313 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      ..|.|+|||++.+++|++||++.|++.+.            ...+......|+.|.+
T Consensus        77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l------------~~~~~~~~~~w~~L~~  121 (136)
T 1gmi_A           77 RKIELAVFHDAPIGYDDFVANCTIQFEEL------------LQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHH------------TSTTCSEEEEEEECBS
T ss_pred             CEEEEEEEeCCCCCCCCEEEEEEEEHHHh------------cccCCCCccEEEEcCC
Confidence            57999999999999999999999977433            2223334567777765

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.67  E-value=1.3e-16  Score=133.74  Aligned_cols=88  Identities=25%  Similarity=0.402  Sum_probs=71.0

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeee-cCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIK-RRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~-~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      .+.|.|+|++|++|+.   .|.+||||+|..     +..+|+++ .+++||+|||+|.|. ++  .. ...|.|+|||+|
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~~-----~~~kt~~~~~~t~nP~WnE~f~f~-v~--~~-~~~L~~~V~D~d   71 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLKV-----QNVKSTTIAVRGSQPSWEQDFMFE-IN--RL-DLGLTVEVWNKG   71 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEEE-----TTEEEECCCEESSSCEEEEEEEEE-EC--CC-SSEEEEEEEECC
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEEe-----cCEEEeEecCCCCCceECCEEEEE-Ee--CC-CCeEEEEEEECC
Confidence            3579999999998853   678999999992     23456554 479999999999998 33  32 357999999999


Q ss_pred             CCCCCccccceeeccccccCCC
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSE  215 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~  215 (475)
                       .++|++||++.++|.++....
T Consensus        72 -~~~dd~iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           72 -LIWDTMVGTVWIPLRTIRQSN   92 (131)
T ss_dssp             -SSCEEEEEEEEEEGGGSCBCS
T ss_pred             -CCCCCeEEEEEEEHHHhhhcC
Confidence             889999999999999986443

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.66  E-value=7.4e-16  Score=132.35  Aligned_cols=90  Identities=33%  Similarity=0.568  Sum_probs=79.2

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      .+.|.|+|++|++|+..+..|.+||||++++  ++   .+++|++++++.||.|||+|.|.+....   ..|.|+|||++
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~l~~~v~d~d   87 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV--GK---TKKRTKTIYGNLNPVWEENFHFECHNSS---DRIKVRVLDED   87 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE--TT---EEEECCCCCSCSSCEEEEEEEEEECSTT---CEEEEEEEECC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE--CC---EEEECCccCCCCCCCcccEEEEEecCCC---CEEEEEEEECC
Confidence            5899999999999999999999999999987  22   4569999999999999999999986443   47999999999


Q ss_pred             CC-----------CCCeeeEEEEEcCcCC
Q psy15955        324 NI-----------GRNELIGRILLAGKNG  341 (475)
Q Consensus       324 ~~-----------~~d~~lG~~~i~l~~~  341 (475)
                      ..           +++++||++.|++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l  116 (148)
T 3kwu_A           88 DDIKSRVKQRFKRESDDFLGQTIIEVRTL  116 (148)
T ss_dssp             CSHHHHHHTTTSSCSSEEEEEEEEEGGGC
T ss_pred             CCccccccccccCCCCccEEEEEEEHHHC
Confidence            86           7899999999988654

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.65  E-value=1.6e-15  Score=134.22  Aligned_cols=99  Identities=26%  Similarity=0.349  Sum_probs=78.6

Q ss_pred             CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCc-eeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955        242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGE-KRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       242 ~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      ...+.|.|+|++|++|+..+..+.+||||++++.... +...+++|++++++.||.|||+|.|.+...   ...|.|+||
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~L~~~V~   81 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEVF   81 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT---TCEEEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC---CCEEEEEEE
Confidence            4568999999999999999999999999999987432 334678999999999999999999998743   257999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      |++.++++++||++.|++.++..
T Consensus        82 d~d~~~~d~~lG~~~i~l~~l~~  104 (176)
T 3m7f_B           82 DENRLTRDDFLGQVDVPLYPLPT  104 (176)
T ss_dssp             ECC----CEEEEEEEEESCSCCB
T ss_pred             ECCCCCCCcEEEEEEEEHHHccc
Confidence            99999999999999998866543

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=3.5e-16  Score=162.18  Aligned_cols=118  Identities=31%  Similarity=0.490  Sum_probs=100.7

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      ..+.|.|+|++|++|++.|..|.+||||+|++   +...++|+++++++||+|||+|.|.   +..+....|+|+|||+|
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~---~~~~~~T~~~~~t~nP~w~e~f~f~---~~~~~~~~l~~~v~d~d  458 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWNFNCQFF---IKDLYQDVLCLTLFDRD  458 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE---TTEEEECCCCSSCSSCEEEEEEEEE---ESCTTTCEEEEEEEECC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEE---CCeeccCCccCCCCCCccCceEEEE---ecCCCCCEEEEEEEeCC
Confidence            45689999999999999999999999999999   4467899999999999999999998   33445578999999999


Q ss_pred             CCCCCccccceeeccccccCCCC----cceeeccCCCCCCcccceeeeeee
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEK----PTFWKALKPPAKDKCGELLTSLCY  240 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~G~l~l~l~~  240 (475)
                      ..+++++||++.++|.++..+..    ...|++|..   ...|+|.+.+.+
T Consensus       459 ~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~---~~~G~i~l~~~l  506 (510)
T 3jzy_A          459 QFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE---VPTGEVWVRFDL  506 (510)
T ss_dssp             SSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS---SSSCEEEEEEEE
T ss_pred             CCCCCCceEEEEEEHHHhccccCCCCceeeeecCCC---CCCceEEEEEEE
Confidence            99999999999999999975433    567998864   367898888764

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.63  E-value=5.6e-16  Score=130.37  Aligned_cols=90  Identities=23%  Similarity=0.368  Sum_probs=77.8

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      ...|.|+|++|++|+..+..|.+||||++++.+.+   .+++|+++++++||.|||+|.|.+...+    .|.|+|||++
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~----~l~~~v~d~d   76 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG---QCHSTDTVKNTLDPKWNQHYDLYVGKTD----SITISVWNHK   76 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC---CEEECCCCSSCSSCEEEEEEEEEEETTC----CEEEEEEEGG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC---ceEECCccCCCCCCCccCEEEEEeCCCC----EEEEEEEECC
Confidence            45799999999999999999999999999884332   4679999999999999999999986433    4999999999


Q ss_pred             CCCC---CeeeEEEEEcCcC
Q psy15955        324 NIGR---NELIGRILLAGKN  340 (475)
Q Consensus       324 ~~~~---d~~lG~~~i~l~~  340 (475)
                      .+++   |++||++.|++.+
T Consensus        77 ~~~~~~~d~~lG~~~i~l~~   96 (132)
T 3pyc_A           77 KIHKKQGAGFLGCVRLLSNA   96 (132)
T ss_dssp             GTTSSTTTTEEEEEEECHHH
T ss_pred             CCCCCCCCCceEEEEEeHHH
Confidence            9876   8999999997643

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.63  E-value=3.4e-16  Score=132.47  Aligned_cols=91  Identities=22%  Similarity=0.373  Sum_probs=79.2

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecccccccceEEEEEEe
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKIRECSLNVMVMD  321 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d  321 (475)
                      ..+.|.|+|++|++|+..+..+.+||||++++..     .+++|++++ ++.||.|||+|.|.+..   ....|.|+|||
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d   79 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-----QDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFD   79 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-----CEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECC
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC-----ccceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEE
Confidence            4678999999999999999999999999997732     245899998 89999999999999874   34579999999


Q ss_pred             ccCCCCCeeeEEEEEcCcCC
Q psy15955        322 FDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       322 ~~~~~~d~~lG~~~i~l~~~  341 (475)
                      ++.+++|++||++.|++.+.
T Consensus        80 ~~~~~~d~~lG~~~i~l~~l   99 (136)
T 1wfj_A           80 KDVGTEDDAVGEATIPLEPV   99 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHH
T ss_pred             CCCCCCCceEEEEEEEHHHh
Confidence            99999999999999987543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.60  E-value=1.7e-15  Score=155.42  Aligned_cols=108  Identities=23%  Similarity=0.290  Sum_probs=88.5

Q ss_pred             CEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      +.|.|+|++|++|+. |..|++||||+|++.   .+.+||+++++++||+|||+|.|..+..  .....|+|+|||+|..
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~---~~~~kTkvik~tlNP~Wne~f~f~~~~~--~~~~~L~~~V~D~D~~  467 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFG---GQEFRTGVVWNNNNPRWTDKMDFENVLL--STGGPLRVQVWDADYG  467 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSCCCEEEEEEET---TEEEECCCBCSCSSCBCCCCEEEEEEET--TTCCCEEEEEEECCSS
T ss_pred             cEEEEEEEEccCCCc-ccCCCcCeEEEEEEC---CEeeeeeeecCCCCCCCCeEEEEEEecC--CCCCEEEEEEEECCCC
Confidence            479999999999999 999999999999993   3568999999999999999999972211  1356899999999999


Q ss_pred             CCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeee
Q psy15955        196 SRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLC  239 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~  239 (475)
                      ++||+||++.++|..    +....|.+|.      .|.|.+++.
T Consensus       468 ~~dD~LG~~~~~L~~----g~~~~~~~l~------~G~l~~~~~  501 (540)
T 3nsj_A          468 WDDDLLGSCDRSPHS----GFHEVTCELN------HGRVKFSYH  501 (540)
T ss_dssp             SCCEEEEEEEECCCS----EEEEEEEECS------SSEEEEEEE
T ss_pred             CCCCEEEEEEEEeeC----CcEEEEEEcC------CeEEEEEEE
Confidence            999999999999872    2346787764      266666643

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.59  E-value=1.3e-15  Score=160.89  Aligned_cols=109  Identities=24%  Similarity=0.386  Sum_probs=95.9

Q ss_pred             CCCEEEEEEEEeecCCC---CCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEE
Q psy15955        114 DNSTLILRVISAKELPA---KDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVF  190 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~  190 (475)
                      ..+.|.|+|++|++|+.   +|..|.+||||+|++.+....++||+++++++||+|||+|.|. +.  ......|+|+||
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~-v~--~~~~~~L~~~V~   92 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI-LD--PNQENVLEITLM   92 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE-EC--TTSCCBCEEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEE-ec--CCCCCEEEEEEE
Confidence            35679999999999999   8888999999999997655578899999999999999999998 33  334568999999


Q ss_pred             eeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        191 DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      |+|.++ +++||++.++|.++..+.....|++|.+.
T Consensus        93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            999998 99999999999999888888899999764

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=2.6e-15  Score=131.07  Aligned_cols=88  Identities=25%  Similarity=0.402  Sum_probs=71.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      .+.|.|+|++|++|+   ..+.+||||+|..     +..||+++. +++||+|||+|.|. +.  .. ...|.|+|||+|
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~~-----~~~kt~~~~~~t~nP~WnE~f~f~-v~--~~-~~~L~~~V~D~d   80 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLKV-----QNVESTTIAVRGSQPSWEQDFMFE-IN--RL-DLGLTVEVWNKG   80 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEEE-----TTEEEECCCEESSSCEEEEEEEEE-CC--CT-TSEEEEEEEECC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEEe-----cceEEEEecCCCCCCCCCCEEEEE-ee--CC-CCEEEEEEEECC
Confidence            457999999999884   2678999999992     235676665 69999999999998 33  32 357999999999


Q ss_pred             CCCCCccccceeeccccccCCC
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSE  215 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~  215 (475)
                       +++|++||++.++|.++....
T Consensus        81 -~~~dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           81 -LIWDTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             -SSCCEEEEEEEEEGGGSCBCS
T ss_pred             -CCCCceEEEEEEEHHHhcccC
Confidence             888999999999999986443

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.56  E-value=1.3e-14  Score=127.47  Aligned_cols=89  Identities=21%  Similarity=0.246  Sum_probs=74.9

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      ..+.|.|+|++|++|+..+..+.+||||+|++.  +   .+++|+++++++||+|||+|.|.+..    ...|.|+|||+
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~--~---~~~kT~v~~~tlnP~Wne~f~f~v~~----~~~L~~~V~D~  104 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVD--G---QSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSH  104 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEET--T---EEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEEC
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEEC--C---EEeEccccCCCCCCeECCEEEEEeCC----CCEEEEEEEEC
Confidence            457899999999999944444459999999873  2   56799999999999999999999853    45799999999


Q ss_pred             cCCCCCeeeEEEEEcCcC
Q psy15955        323 DNIGRNELIGRILLAGKN  340 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~  340 (475)
                      +.++++++||++.|++.+
T Consensus       105 d~~~~dd~lG~~~i~l~~  122 (173)
T 2nq3_A          105 QTLKSDVLLGTAALDIYE  122 (173)
T ss_dssp             CSSSCCEEEEEEEEEHHH
T ss_pred             CCCCCCceEEEEEEEHHH
Confidence            999999999999998754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.51  E-value=9.4e-14  Score=148.38  Aligned_cols=126  Identities=33%  Similarity=0.556  Sum_probs=106.8

Q ss_pred             CCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeec
Q psy15955         97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEG  174 (475)
Q Consensus        97 ~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~  174 (475)
                      ......|+|.+++.+  ..+.|.|.|++|++|+++|..|.+||||++++.+++  ..+.+|+++++++||+|||+|.|. 
T Consensus       155 d~~~~~g~i~~~~~~--~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~-  231 (674)
T 3pfq_A          155 DHTERRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ-  231 (674)
T ss_dssp             CSSCCSCEEEEEEEE--CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEE-
T ss_pred             cccccccccccccee--ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeee-
Confidence            345668999998888  478999999999999999999999999999997653  356899999999999999999998 


Q ss_pred             ccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       175 ~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      +...+ ....|.|+|||+|..+++++||++.+++.++.... ...|+.|....
T Consensus       232 ~~~~~-~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~  282 (674)
T 3pfq_A          232 LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE  282 (674)
T ss_dssp             CCSTT-TTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred             cccCC-ccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence            44333 34569999999999999999999999999997654 47899886543

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.48  E-value=1.5e-13  Score=115.11  Aligned_cols=85  Identities=19%  Similarity=0.263  Sum_probs=68.2

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccc-cCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIF-KCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~-~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      .+.|.|+|++|++|+.   .|.+||||++.  .     ...+|+++ .++.||.|||+|.|.+...   ...|.|+|||+
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~-----~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~   70 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--V-----QNVKSTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNK   70 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEE--E-----TTEEEECCCEESSSCEEEEEEEEEECCC---SSEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEE--e-----cCEEEeEecCCCCCceECCEEEEEEeCC---CCeEEEEEEEC
Confidence            4689999999998853   67899999997  1     12244444 4799999999999999743   24699999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~  342 (475)
                      + +++|++||++.|++.+..
T Consensus        71 d-~~~dd~iG~~~i~l~~l~   89 (131)
T 2cjt_A           71 G-LIWDTMVGTVWIPLRTIR   89 (131)
T ss_dssp             C-SSCEEEEEEEEEEGGGSC
T ss_pred             C-CCCCCeEEEEEEEHHHhh
Confidence            9 889999999999986643

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.47  E-value=4.4e-15  Score=151.82  Aligned_cols=101  Identities=27%  Similarity=0.447  Sum_probs=13.7

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCC---CCceeeeeEEeecccccccccceEEEEEEe
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRT---LNPRWNETLYFEGFPIQKLQSRVLHLHVFD  191 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~---~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d  191 (475)
                      .+.|.|+|++|++|+++|     ||||++++.  +....||++++++   +||+|||+|.|.+++  .  ...|.|+|||
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~--~--~~~L~v~V~d   78 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLD--DMLYARTTSKPRSASGDTVFWGEHFEFNNLP--A--VRALRLHLYR   78 (483)
T ss_dssp             EECC----------------------------------------------------CCEECC------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEEC--CeEEeeeeEEeCCCCCCCCccccEEEEecCC--C--ccEEEEEEEe
Confidence            357999999999999886     999999983  3345699999999   999999999998422  1  3689999999


Q ss_pred             e-C---CCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        192 Y-D---RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       192 ~-d---~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      . |   +.+++++||.+.|++.++..+.....|++|...
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~  117 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLP  117 (483)
T ss_dssp             ----------------------------CCEECC-----
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCC
Confidence            4 4   367899999999999999888788899999543

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.44  E-value=2.1e-13  Score=112.58  Aligned_cols=89  Identities=21%  Similarity=0.356  Sum_probs=77.5

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      -.|+|.|..|.+|+     |++|||+++.+     +-.+++|++++ ++.||+|||.|+|++......+..|.|.|+|++
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~F-----Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~   90 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS   90 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEE-----TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEE-----eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence            46889999999998     47899999977     23567999998 699999999999999876666788999999999


Q ss_pred             CCCCCeeeEEEEEcCcCCCC
Q psy15955        324 NIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~~~~  343 (475)
                      +++++.+||++.++|.+...
T Consensus        91 ~v~~nrlIG~~~i~Lq~lv~  110 (144)
T 3l9b_A           91 KVFSNKLIGTFRMVLQKVVE  110 (144)
T ss_dssp             TTSCCEEEEEEEEESHHHHH
T ss_pred             cccCCCEEEEEEEEhHHhcc
Confidence            99999999999999865443

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.41  E-value=3.1e-13  Score=142.79  Aligned_cols=108  Identities=21%  Similarity=0.360  Sum_probs=90.9

Q ss_pred             CceeEEEEEEeeccCcc---cccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEE
Q psy15955        243 SNSVLTITLLKARNLKA---KDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMV  319 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~---~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V  319 (475)
                      ..+.|.|.|++|++|+.   +|..|++||||+|++....  ..+++|+++++++||+|||+|.|.+....  ...|.|+|
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~--~~k~kTkvik~tlNPvWNEtF~F~v~~~~--~~~L~~~V   91 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITL   91 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEEECTTS--CCBCEEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC--CCeEecceEcCCCCCeeeeEEEEEecCCC--CCEEEEEE
Confidence            46899999999999999   8888999999999875322  25679999999999999999999997532  35799999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGSGASETKHWQDMIT  355 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~  355 (475)
                      ||++.++ +++||++.|++.++..+....+|.++..
T Consensus        92 ~D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           92 MDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             EECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             EECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            9999998 9999999999988766666667777643

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.41  E-value=7.1e-13  Score=135.94  Aligned_cols=89  Identities=22%  Similarity=0.289  Sum_probs=76.6

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      .+.|.|.|++|++|+. |..|++||||+|++.  +   .+++|+++++++||+|||+|.|.+.... ....|.|+|||+|
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~--~---~~~kTkvik~tlNP~Wne~f~f~~~~~~-~~~~L~~~V~D~D  465 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG--G---QEFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDAD  465 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEET--T---EEEECCCBCSCSSCBCCCCEEEEEEETT-TCCCEEEEEEECC
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC--C---EeeeeeeecCCCCCCCCeEEEEEEecCC-CCCEEEEEEEECC
Confidence            4689999999999998 999999999999873  2   2479999999999999999999853211 2457999999999


Q ss_pred             CCCCCeeeEEEEEcCc
Q psy15955        324 NIGRNELIGRILLAGK  339 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~  339 (475)
                      ..++|++||.+.+++.
T Consensus       466 ~~~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          466 YGWDDDLLGSCDRSPH  481 (540)
T ss_dssp             SSSCCEEEEEEEECCC
T ss_pred             CCCCCCEEEEEEEEee
Confidence            9999999999999874

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.40  E-value=1.3e-12  Score=136.98  Aligned_cols=99  Identities=22%  Similarity=0.358  Sum_probs=84.2

Q ss_pred             CceeEEEEEEeeccCccccc--CCCccceEEEEEEeCceeeeeeecccccCC-CCCeecceEEEeecccccccceEEEEE
Q psy15955        243 SNSVLTITLLKARNLKAKDI--NGKSDPYVKVWLQFGEKRIEKRKTQIFKCN-LNPVFNESFSFNVPWEKIRECSLNVMV  319 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~v~~~~l~~~~l~i~V  319 (475)
                      ..+.|.|+|++|++|+..+.  .+.+||||+|.+........+++|++++++ .||+|||+|.|.+...++  ..|.|+|
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el--~~L~~~V  572 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMV  572 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG--CEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC--CEEEEEE
Confidence            45789999999999999874  688999999998654333356799999997 999999999999986665  4799999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      ||++.++++++||++.|++..+..
T Consensus       573 ~D~D~~~~dd~iG~~~ipl~~L~~  596 (624)
T 1djx_A          573 EDYDSSSKNDFIGQSTIPWNSLKQ  596 (624)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGBCC
T ss_pred             EEcCCCCCCceeEEEEEEHHHcCC
Confidence            999999999999999999866543

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.40  E-value=7e-13  Score=115.55  Aligned_cols=85  Identities=16%  Similarity=0.245  Sum_probs=68.7

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      .+.|.|+|++|++|+   ..+.+||||++.  .     ..++|++++ ++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~-----~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~   79 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--V-----QNVESTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNK   79 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--E-----TTEEEECCCEESSSCEEEEEEEEECCCT---TSEEEEEEEEC
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--e-----cceEEEEecCCCCCCCCCCEEEEEeeCC---CCEEEEEEEEC
Confidence            458999999999885   367899999997  1     123455554 699999999999998743   34699999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~  342 (475)
                      + +++|++||++.|++.+..
T Consensus        80 d-~~~dd~iG~~~i~L~~l~   98 (167)
T 2cjs_A           80 G-LIWDTMVGTVWIPLRTIR   98 (167)
T ss_dssp             C-SSCCEEEEEEEEEGGGSC
T ss_pred             C-CCCCceEEEEEEEHHHhc
Confidence            9 889999999999997654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.40  E-value=4.9e-13  Score=138.48  Aligned_cols=93  Identities=25%  Similarity=0.389  Sum_probs=80.0

Q ss_pred             CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEe
Q psy15955        242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMD  321 (475)
Q Consensus       242 ~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d  321 (475)
                      ...+.|.|+|++|++|+..+..|.+||||++++  ++   .+++|+++++++||.|||+|.|.+..  .....|.|+|||
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~--~~---~~~~T~~~~~t~nP~w~e~f~f~~~~--~~~~~l~~~v~d  456 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISM--GS---QSYTTRTIQDTLNPKWNFNCQFFIKD--LYQDVLCLTLFD  456 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE--TT---EEEECCCCSSCSSCEEEEEEEEEESC--TTTCEEEEEEEE
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEE--CC---eeccCCccCCCCCCccCceEEEEecC--CCCCEEEEEEEe
Confidence            346789999999999999999999999999987  22   35799999999999999999999863  344679999999


Q ss_pred             ccCCCCCeeeEEEEEcCcCC
Q psy15955        322 FDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       322 ~~~~~~d~~lG~~~i~l~~~  341 (475)
                      ++.+++|++||++.+++.+.
T Consensus       457 ~d~~~~~d~lG~~~~~l~~l  476 (510)
T 3jzy_A          457 RDQFSPDDFLGRTEIPVAKI  476 (510)
T ss_dssp             CCSSSSCCEEEEEEEEHHHH
T ss_pred             CCCCCCCCceEEEEEEHHHh
Confidence            99999999999999987543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.39  E-value=5.7e-13  Score=142.29  Aligned_cols=123  Identities=30%  Similarity=0.472  Sum_probs=103.4

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      ...|.|.+++.+.  .+.|.|.|++|++|..++..|.+||||++++.+++....+++|+++++++||.|||+|.|.+...
T Consensus       158 ~~~g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~  235 (674)
T 3pfq_A          158 ERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES  235 (674)
T ss_dssp             CCSCEEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCST
T ss_pred             cccccccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccC
Confidence            4568888888775  57899999999999999999999999999998776666678999999999999999999998765


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMIT  355 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~  355 (475)
                      +. ...|.|+|||++..+++++||.+.+++.+.... +..+|..++.
T Consensus       236 ~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls  280 (674)
T 3pfq_A          236 DK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  280 (674)
T ss_dssp             TT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHC-CEEEEEECBC
T ss_pred             Cc-cceeeeEEeecccccccccccccccchhhhccC-Ccccceeecc
Confidence            53 456999999999999999999999988665432 3466776654

>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...

Probab=99.28  E-value=5.1e-13  Score=133.76  Aligned_cols=103  Identities=21%  Similarity=0.236  Sum_probs=95.2

Q ss_pred             cccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhc---cccchHHHHHHHHHHhc
Q psy15955        353 MITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC---NWNNVDEELLNFSQSYN  429 (475)
Q Consensus       353 ~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~---~~~~~~~~l~~~l~~y~  429 (475)
                      ..+.|....++.+..+.+..|+.+|...|+.+..+++++|++||.+||+|++++..+++.   ....|.+.|+.++++||
T Consensus       178 ~~g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~s~~~~p~~nG~~Er~n~~lk~~l~~~~~~~~~~w~~~l~~~~~~~N  257 (395)
T 3oym_A          178 SIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKHSDIKRLLTKLLVGRPTKWYDLLPVVQLALN  257 (395)
T ss_dssp             TTCCCSEEEECSCHHHHSHHHHHHHHHTTCEEEECCTTCGGGGHHHHHHHHHHHHHHHHHHTTSCCCCGGGHHHHHHHHH
T ss_pred             ccCCceEEEeCCCCceecHHHHHHHHHcCCceeecCCcCCcccChhhhHHHHHHHHHHHHhhcCccCHHHHHHHHHHHHh
Confidence            345677888999999999999999999999999999999999999999999999999875   34789999999999999


Q ss_pred             CccCCCCCCChhhhhcCCccCccccc
Q psy15955        430 STPHTTLGVSPAELHLGRKLKTTFDK  455 (475)
Q Consensus       430 ~~~~~~~~~sP~~l~~gr~~~~~~~~  455 (475)
                      ++||.++|.||++++||+++++|++.
T Consensus       258 ~~~~~~~g~tP~~l~~g~~~~~p~~~  283 (395)
T 3oym_A          258 NTYSPVLKYTPHQLLFGIDSNTPFAN  283 (395)
T ss_dssp             TCCBTTTTBCHHHHHHSSCCSSTTCC
T ss_pred             CCCCcccCCCHHHHHcCCCCCCcchh
Confidence            99999999999999999999999874

>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A

Probab=99.27  E-value=8.4e-13  Score=119.09  Aligned_cols=102  Identities=21%  Similarity=0.198  Sum_probs=78.3

Q ss_pred             cCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc---ccchHHHHHHHHHHhcCc
Q psy15955        355 TKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN---WNNVDEELLNFSQSYNST  431 (475)
Q Consensus       355 ~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~---~~~~~~~l~~~l~~y~~~  431 (475)
                      +.|....++.+.-+.+..|..+|...|+.+..+.+++|+.||.+||++++++..+++..   ...|.+.|..+++.||++
T Consensus        68 g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~l~~~~~~~~~~~~~~w~~~l~~~~~~~N~~  147 (200)
T 2x78_A           68 AIPRVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNT  147 (200)
T ss_dssp             CCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECC-------CHHHHHHHHHHHHHHHHHHTCTTTTTTTHHHHHHHHHTS
T ss_pred             CCCcEEEecCCcceehHHHHHHHHHcCceEeECCCCCCCccCHhHhhHHHHHHHHHHHHhcCcccHHHHHHHHHHHHcCC
Confidence            44666778888888888899999999999999999999999999999999999987652   356999999999999999


Q ss_pred             cCCCCCCChhhhhcCCccCcccccc
Q psy15955        432 PHTTLGVSPAELHLGRKLKTTFDKL  456 (475)
Q Consensus       432 ~~~~~~~sP~~l~~gr~~~~~~~~~  456 (475)
                      ||..+|.||+|++||+++++|++..
T Consensus       148 ~~~~~~~tP~e~~~g~~~~~p~~~~  172 (200)
T 2x78_A          148 YSPVLKYTPHQLLFGIDSNTPFANQ  172 (200)
T ss_dssp             CBTTTTBCHHHHHHCCC--------
T ss_pred             CCcccCCChHHHHhCCCCCCccccc
Confidence            9999999999999999999998753

>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A

Probab=99.14  E-value=4.1e-12  Score=116.32  Aligned_cols=98  Identities=20%  Similarity=0.260  Sum_probs=88.2

Q ss_pred             ccccccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc--cchHHHHHHHHHH
Q psy15955        350 WQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW--NNVDEELLNFSQS  427 (475)
Q Consensus       350 w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~--~~~~~~l~~~l~~  427 (475)
                      +....+ |....++.+..+.+..|.++|...|+.+..+++++|++||.+||+|++++..+++...  ..|...|+.+++.
T Consensus       106 ~~~~~g-p~~i~sDnG~~F~s~~~~~~~~~~gi~~~~s~p~~p~~nG~~Er~~~~lk~~l~~~~~~~~~~~~~l~~~~~~  184 (219)
T 3hph_A          106 WYAMFA-PKSLQSDNGPAFVAESTQLLMKYLGIEHTTGIPWNPQSQALVERTHQTLKNTLEKLIPMFNAFESALAGTLIT  184 (219)
T ss_dssp             HHHHHC-CCEEEECCCHHHHSHHHHHHHHHHTCEEEESCCCCHHHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             HHHHhC-CcEEEeCCCchhhhHHHHHHHHHcCCeEeECCCCCCcccChhhhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            333445 7888899999999999999999999999999999999999999999999999987643  7899999999999


Q ss_pred             hcCccCCCCCCChhhhhcCCc
Q psy15955        428 YNSTPHTTLGVSPAELHLGRK  448 (475)
Q Consensus       428 y~~~~~~~~~~sP~~l~~gr~  448 (475)
                      ||++|+.++|.||+|+++|++
T Consensus       185 ~N~~~~~~lg~tP~e~~~~~~  205 (219)
T 3hph_A          185 LNIKRKGGLGTSPMDIFIFNK  205 (219)
T ss_dssp             HHTTCCCTTSCCHHHHHHHHH
T ss_pred             HhCCCCCccCcCHHHHHhCCh
Confidence            999999999999999888764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.11  E-value=6.8e-12  Score=128.21  Aligned_cols=100  Identities=19%  Similarity=0.265  Sum_probs=13.2

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCC---CCCeecceEEEeecccccccceEEEEEE
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCN---LNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t---~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      .+.|.|+|++|++|++++     ||||++++.  +  ..+.||++++++   .||.|||+|.|.+...   ...|.|+||
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~--~--~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~---~~~L~v~V~   77 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLD--D--MLYARTTSKPRSASGDTVFWGEHFEFNNLPA---VRALRLHLY   77 (483)
T ss_dssp             EECC------------------------------------------------------CCEECC----------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEEC--C--eEEeeeeEEeCCCCCCCCccccEEEEecCCC---ccEEEEEEE
Confidence            468999999999999876     999999873  2  124589999999   9999999999986432   257999999


Q ss_pred             ec-c---CCCCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955        321 DF-D---NIGRNELIGRILLAGKNGSGASETKHWQDMIT  355 (475)
Q Consensus       321 d~-~---~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~  355 (475)
                      |. +   ..+++++||.+.|++.+...+...++|..+..
T Consensus        78 d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           78 RDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             -----------------------------CCEECC----
T ss_pred             ecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence            94 4   36789999999999988776666777887754

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A

Probab=99.03  E-value=2.1e-11  Score=104.52  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=86.7

Q ss_pred             ccccccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc--cchHHHHHHHHHH
Q psy15955        350 WQDMITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW--NNVDEELLNFSQS  427 (475)
Q Consensus       350 w~~~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~--~~~~~~l~~~l~~  427 (475)
                      |....+ |....++.+..+.+..|..+|...|+.+..+++++|+.||.+||++++++..+++...  ..|.+.|..+++.
T Consensus        48 ~~~~~g-p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~~~~~~~~~~~l~~~~~~  126 (152)
T 3kks_A           48 LIQRYT-VLHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYNPQSQGVVERAHRDLKDRLAAYQGDCETVEAALSLALVS  126 (152)
T ss_dssp             HHHHSC-CSEEEECSCHHHHSHHHHHHHHHTTCEEEESSCSCHHHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             HHHHhC-CcEEecCCchHhhHHHHHHHHHHcCCeecccCCcCCCccchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            333345 7778888888888899999999999999999999999999999999999999887643  7899999999999


Q ss_pred             hcCccCCCCC-CChhhhhcCCcc
Q psy15955        428 YNSTPHTTLG-VSPAELHLGRKL  449 (475)
Q Consensus       428 y~~~~~~~~~-~sP~~l~~gr~~  449 (475)
                      || +||..+| .||+|++++.+.
T Consensus       127 ~N-~~~~~l~~~tP~e~~~~~~~  148 (152)
T 3kks_A          127 LN-KKRGGIGGHTPYEIYLESEH  148 (152)
T ss_dssp             HH-HSCCCSTTCCHHHHHHHHHH
T ss_pred             Hc-CccccCCCCCHHHHHHhCcC
Confidence            99 9999997 999999997653

>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A

Probab=99.02  E-value=7e-11  Score=107.46  Aligned_cols=92  Identities=13%  Similarity=0.099  Sum_probs=74.1

Q ss_pred             CcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc--ccchHHHHHHHHHHhcCccCCC
Q psy15955        358 RQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN--WNNVDEELLNFSQSYNSTPHTT  435 (475)
Q Consensus       358 ~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~--~~~~~~~l~~~l~~y~~~~~~~  435 (475)
                      ....++.+..+.+..|+.+|...|+.+..+++++|+.||.+||++++++..+++..  ...|.+.|..+++.||.+||.+
T Consensus       111 ~~i~sDnG~~f~s~~~~~~~~~~gi~~~~s~p~~p~~nG~~Er~~~~lk~~l~~~~~~~~~~~~~l~~~~~~~N~~~~~~  190 (212)
T 1k6y_A          111 KTVHTDNGSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGG  190 (212)
T ss_dssp             CEEECCCSTTTTSHHHHHHHHHHTCEECCC---------HHHHHHHHHHHHHHTTGGGCSSHHHHHHHHHHHHHHSCCBT
T ss_pred             eEEEcCCCcccccHHHHHHHHHCCCeeeECCCCCCcchhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcccccCC
Confidence            45668888888899999999999999999999999999999999999999997653  3789999999999999999998


Q ss_pred             C-CCChhhhhcCCcc
Q psy15955        436 L-GVSPAELHLGRKL  449 (475)
Q Consensus       436 ~-~~sP~~l~~gr~~  449 (475)
                      + |.||+|+++|+.+
T Consensus       191 l~~~tP~e~~~~~~p  205 (212)
T 1k6y_A          191 IGGYSAGERIVDIIA  205 (212)
T ss_dssp             TTTBCHHHHHHHHHH
T ss_pred             CCCCCHHHHHhcCCc
Confidence            8 7999999998754

>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A

Probab=99.00  E-value=2e-10  Score=104.25  Aligned_cols=91  Identities=16%  Similarity=0.180  Sum_probs=83.0

Q ss_pred             CcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc--cchHHHHHHHHHHhcCccCCC
Q psy15955        358 RQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW--NNVDEELLNFSQSYNSTPHTT  435 (475)
Q Consensus       358 ~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~--~~~~~~l~~~l~~y~~~~~~~  435 (475)
                      ....++.+..+.+..|.++|...|+.+..+++|+|++||.+||+|++++..|++...  ..|...|..+.+.||..++.+
T Consensus       112 ~~i~sDnG~~F~s~~~~~~~~~~gi~~~~s~~~~p~~nG~~Er~n~~lk~~l~~~~~~~~~~~~~l~~~~~~~N~~~~~~  191 (210)
T 3f9k_A          112 THLHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGG  191 (210)
T ss_dssp             SEEEECCCTTTSSHHHHHHHHHHTCEEEESSCCCTTCTTHHHHHHHHHHHHHHHTGGGCSSHHHHHHHHHHHHHHSCCBT
T ss_pred             CEEEeCCCchhhHHHHHHHHHHCCCceeeCCCcCCCcccHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhccCCCC
Confidence            347799999999999999999999999999999999999999999999999988743  789999999999999999988


Q ss_pred             CC-CChhhhhcCCc
Q psy15955        436 LG-VSPAELHLGRK  448 (475)
Q Consensus       436 ~~-~sP~~l~~gr~  448 (475)
                      +| +||+|+++++-
T Consensus       192 l~~~tP~e~~~~~~  205 (210)
T 3f9k_A          192 IGDMTPSERLINMI  205 (210)
T ss_dssp             TTTBCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHh
Confidence            87 69999998753

>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2

Probab=98.98  E-value=2.4e-10  Score=99.06  Aligned_cols=91  Identities=19%  Similarity=0.185  Sum_probs=70.7

Q ss_pred             CCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc--ccchHHHHHHHHHHhcCccCC
Q psy15955        357 PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN--WNNVDEELLNFSQSYNSTPHT  434 (475)
Q Consensus       357 p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~--~~~~~~~l~~~l~~y~~~~~~  434 (475)
                      +....++.+.-+.+..|+.+|...|+.+..+++++|+.||.+||++++++..+++..  ...|...|..++..||.+||.
T Consensus        61 ~~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~vEr~~~~lk~~l~~~~~~~~~~~~~l~~~~~~~N~~~~~  140 (164)
T 1c6v_A           61 ITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRG  140 (164)
T ss_dssp             CCEEECCCCSSTTSSHHHHHHHHHTCEEECC-----------CCTTTHHHHHHHTTTTSSSCHHHHHHHHHHHHHSCCCS
T ss_pred             CCEEEeCCchhhhhHHHHHHHHHcCCeEeECCCCCCcccceehHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCccC
Confidence            455667888888888999999999999999999999999999999999999888753  277999999999999999999


Q ss_pred             CC-CCChhhhhcCC
Q psy15955        435 TL-GVSPAELHLGR  447 (475)
Q Consensus       435 ~~-~~sP~~l~~gr  447 (475)
                      .+ |.||+|+++|.
T Consensus       141 ~l~~~tP~e~~~~~  154 (164)
T 1c6v_A          141 GIGDMTPAERLINM  154 (164)
T ss_dssp             SSSCCCHHHHHHHH
T ss_pred             CCCCCCHHHHHhcc
Confidence            88 68999999984

>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...

Probab=98.98  E-value=1.3e-10  Score=100.93  Aligned_cols=90  Identities=13%  Similarity=0.107  Sum_probs=81.8

Q ss_pred             CcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc--cchHHHHHHHHHHhcCccCCC
Q psy15955        358 RQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW--NNVDEELLNFSQSYNSTPHTT  435 (475)
Q Consensus       358 ~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~--~~~~~~l~~~l~~y~~~~~~~  435 (475)
                      ....++.+..+.+..|+++|...|+.+..+.+++|+.||.+||++++++..+.+...  ..|...+..+.+.||..||.+
T Consensus        62 ~~i~sD~G~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~~lk~~~~~~~~~~~~~~~~l~~~~~~~N~~~~~~  141 (163)
T 3l3u_A           62 KTVHTDNGSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGG  141 (163)
T ss_dssp             CEEEECCCGGGGSHHHHHHHHHHTCEEEETCCCCCCSTTCCSCHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHCEESS
T ss_pred             cEEeecChHhhhhHHHHHHHHHCCceeeeCCCCCcccccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccCCCCC
Confidence            556688888889999999999999999999999999999999999999998887643  779999999999999999999


Q ss_pred             CC-CChhhhhcCC
Q psy15955        436 LG-VSPAELHLGR  447 (475)
Q Consensus       436 ~~-~sP~~l~~gr  447 (475)
                      +| .||+|++.+.
T Consensus       142 l~~~tP~e~~~~~  154 (163)
T 3l3u_A          142 IGGYSAGERIVDI  154 (163)
T ss_dssp             TTCEEHHHHHHHH
T ss_pred             CCCCChHHHHHHH
Confidence            97 9999998764

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.93  E-value=3.2e-09  Score=113.48  Aligned_cols=89  Identities=21%  Similarity=0.341  Sum_probs=72.3

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCce--eeeeeecccccC-CCCCeecce-EEEe-ecccccccceEEEEE
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK--RIEKRKTQIFKC-NLNPVFNES-FSFN-VPWEKIRECSLNVMV  319 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~~T~~~~~-t~nP~w~e~-f~f~-v~~~~l~~~~l~i~V  319 (475)
                      ..|.|+|+.|++|+..    .+||||+|.+.....  ...+++|+++++ +.||+|||+ |.|. |..+++  ..|.|+|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V  723 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV  723 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence            5799999999999853    589999999864322  225679999886 599999998 9998 876665  4799999


Q ss_pred             EeccCCCCCeeeEEEEEcCcCCCC
Q psy15955        320 MDFDNIGRNELIGRILLAGKNGSG  343 (475)
Q Consensus       320 ~d~~~~~~d~~lG~~~i~l~~~~~  343 (475)
                      ||++    +++||++.+++..+..
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~  743 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKP  743 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCC
T ss_pred             EecC----CCeeeEEEEEHHHcCC
Confidence            9985    7999999999866543

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.93  E-value=5.9e-09  Score=84.47  Aligned_cols=113  Identities=22%  Similarity=0.331  Sum_probs=82.9

Q ss_pred             CCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEeCCC-CceEEe-eeecCCCCceeeeeEEeecccccccccceEEEEEEe
Q psy15955        115 NSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDK-KHRLET-KIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFD  191 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~-~~~~kT-~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d  191 (475)
                      ..-|+|.+.+..-.+... .....||||.|.+...- ....+| ..+++|..|+||+.|.-.   +.  ..+.|.|.|++
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~---V~--~Gr~l~i~Vfh   83 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAH---IN--KGRVMQIIVKG   83 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEEC---CC--SSCEEEEEEEC
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeee---EE--CCeEEEEEEEc
Confidence            345777776665544332 23368999999983210 012577 677889999999999865   33  35789999996


Q ss_pred             eCCCCCCccccceeecccccc-----CCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955        192 YDRFSRDDSIGEVFLPLCQVD-----LSEKPTFWKALKPPAKDKCGELLTSLCYH  241 (475)
Q Consensus       192 ~d~~~~~~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~G~l~l~l~~~  241 (475)
                      ...    +|++.++|++++|.     .++..+.|++|+|     .|+|++.+.|.
T Consensus        84 ~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-----~Gkl~v~i~~~  129 (138)
T 2enj_A           84 KNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP-----QGRMLMNARYF  129 (138)
T ss_dssp             SSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-----SCEEEEEEEEC
T ss_pred             CCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-----CcEEEEEEEEE
Confidence            543    89999999999997     4456689999986     59999999886

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.92  E-value=5.6e-09  Score=83.51  Aligned_cols=113  Identities=21%  Similarity=0.348  Sum_probs=81.4

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC-CceEEe-eeecCCCCceeeeeEEeecccccccccceEEEEEEee
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK-KHRLET-KIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDY  192 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~kT-~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~  192 (475)
                      ..-|+|.+.++.--+.+......||||.|.+...- ....+| ..+++|..|+||+.|.-.   +.  ..+.|.|.|++.
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~---V~--~Gr~l~i~Vfh~   79 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAH---IY--EGRVIQIVLMRA   79 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEE---CC--TTCEEEEEEEEE
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEee---ee--CCEEEEEEEEcC
Confidence            34577777655543322233468999999983110 012365 677889999999999866   33  356899999976


Q ss_pred             CCCCCCccccceeecccccc-----CCCCcceeeccCCCCCCcccceeeeeeec
Q psy15955        193 DRFSRDDSIGEVFLPLCQVD-----LSEKPTFWKALKPPAKDKCGELLTSLCYH  241 (475)
Q Consensus       193 d~~~~~~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~G~l~l~l~~~  241 (475)
                      ..    +|++.+++++++|.     .++..+.|++|+|     .|+|++.+.|.
T Consensus        80 a~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-----~Gkl~~~i~~~  124 (126)
T 1yrk_A           80 AE----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-----QAKVLMSVQYF  124 (126)
T ss_dssp             TT----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-----SCEEEEEEEEE
T ss_pred             CC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-----CcEEEEEEEEe
Confidence            53    89999999999997     4445579999986     59999998875

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.90  E-value=3.9e-09  Score=113.36  Aligned_cols=89  Identities=25%  Similarity=0.345  Sum_probs=71.2

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCce-eeeeeecc-cccC-CCCCeecc-eEEE-eecccccccceEEEE
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK-RIEKRKTQ-IFKC-NLNPVFNE-SFSF-NVPWEKIRECSLNVM  318 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~~T~-~~~~-t~nP~w~e-~f~f-~v~~~~l~~~~l~i~  318 (475)
                      .+.|.|.|++|++|+.    +++||||+|.+..... ...+++|+ ++++ +.||+||| +|.| .|..+++.  .|.|.
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~--~Lr~~  750 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELA--SLRVA  750 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGC--EEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCcc--EEEEE
Confidence            4579999999999985    4689999999864221 12356898 7764 69999999 7999 88767764  79999


Q ss_pred             EEeccCCCCCeeeEEEEEcCcCCC
Q psy15955        319 VMDFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       319 V~d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |||++    +++||++.|++..+.
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~  770 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALN  770 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBC
T ss_pred             EEEeC----CCccceEeeehhhcC
Confidence            99986    799999999986554

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.88  E-value=4.5e-09  Score=112.98  Aligned_cols=88  Identities=22%  Similarity=0.318  Sum_probs=70.3

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCce-eeeeeecccccC-CCCCeecc-eEEEe-ecccccccceEEEEEE
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEK-RIEKRKTQIFKC-NLNPVFNE-SFSFN-VPWEKIRECSLNVMVM  320 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~~T~~~~~-t~nP~w~e-~f~f~-v~~~~l~~~~l~i~V~  320 (475)
                      ..|.|.|+.|++|+..    .+||||+|.+..... ...+++|+++++ +.||+||| +|.|. |...++  ..|.|+||
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~  798 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF  798 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence            4799999999999853    589999999864211 123478999976 59999999 69998 766665  37999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |++    +++||++.|++..+.
T Consensus       799 D~d----ddfiG~~~lpL~~L~  816 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIR  816 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCC
T ss_pred             cCC----ccEEeeEEEEHHHcC
Confidence            987    799999999986554

>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A

Probab=98.88  E-value=1.7e-10  Score=100.23  Aligned_cols=88  Identities=11%  Similarity=0.056  Sum_probs=64.3

Q ss_pred             ccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc----------cchHHHHHH
Q psy15955        354 ITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW----------NNVDEELLN  423 (475)
Q Consensus       354 ~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~----------~~~~~~l~~  423 (475)
                      .+.|....++.+..+.+..|+.+|...|+.+..+.+++|+.||.+||++++++..+++...          ..|.+.|+.
T Consensus        65 ~g~p~~i~sDnG~~f~s~~~~~~~~~~gi~~~~~~p~~p~~ng~~Er~~~tlk~~~~~~~~~~~~~~~l~~~~w~~~l~~  144 (162)
T 1cxq_A           65 LGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAK  144 (162)
T ss_dssp             HCCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC----CHHHHHHHHHHHHHHHHHHHHTTCSSSCCHHHHHHHHHH
T ss_pred             HCCCeEEEeCCchhhhhHHHHHHHHHCCCeEeeCCCCCCccCCEEehHHHHHHHHHHHHcCcccccccCCcchHHHHhhh
Confidence            3456677788888888889999999999999999999999999999999999998876532          459999999


Q ss_pred             HHHHhcCccCCCCCCChh
Q psy15955        424 FSQSYNSTPHTTLGVSPA  441 (475)
Q Consensus       424 ~l~~y~~~~~~~~~~sP~  441 (475)
                      ++++||.+++.++|.|||
T Consensus       145 ~~~~~N~~~~~~~g~tp~  162 (162)
T 1cxq_A          145 AMYALNHFERGENTKTNL  162 (162)
T ss_dssp             HHHHHHC-----------
T ss_pred             eeeeeeccccCCCCCCCC
Confidence            999999999999999997

>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A

Probab=98.74  E-value=3.3e-09  Score=98.23  Aligned_cols=101  Identities=13%  Similarity=0.084  Sum_probs=86.7

Q ss_pred             ccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhc----------cccchHHHHHH
Q psy15955        354 ITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKC----------NWNNVDEELLN  423 (475)
Q Consensus       354 ~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~----------~~~~~~~~l~~  423 (475)
                      .+.|....++.+..+.+..|..+|...|+.+..+.+++|+.||.+||++++++..+.+.          ...+|.+.|..
T Consensus        64 ~g~p~~i~sDnG~~f~s~~~~~~~~~~gI~~~~~~p~~p~~ng~vEr~~~tlk~~~~~~~~~~~~~~~~~~~~~~~~l~~  143 (238)
T 1c0m_A           64 LGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAK  143 (238)
T ss_dssp             HCCCSEEEECSCHHHHSHHHHHHHHHHTCEEEECCSSSSTTSHHHHHHHHHHHHHHHHHHHHTTCSSSCCGGGHHHHHHH
T ss_pred             hCCCcEEEECCCCccccHHHHHHHHHCCCEEEecCCCCcccccHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHH
Confidence            34566777888888889999999999999999999999999999999999999987762          23567789999


Q ss_pred             HHHHhcCccCCCCCCChhhhhcCCccCcccc
Q psy15955        424 FSQSYNSTPHTTLGVSPAELHLGRKLKTTFD  454 (475)
Q Consensus       424 ~l~~y~~~~~~~~~~sP~~l~~gr~~~~~~~  454 (475)
                      ++..||++++...|.||+|+.+|+.+.+...
T Consensus       144 ~i~~yN~~r~~l~~~TP~e~~~~~~~~~~~~  174 (238)
T 1c0m_A          144 AMYALNHKERGENTKTPIQKHWRPTVLTEGP  174 (238)
T ss_dssp             HHHHHHSSCCSSCSSCHHHHHHSCBCCSSCC
T ss_pred             HHHHHcCCCCCCCCCChHHHHhCccccccCC
Confidence            9999999987778999999999987655433

>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A

Probab=98.74  E-value=2e-09  Score=99.79  Aligned_cols=92  Identities=13%  Similarity=0.095  Sum_probs=77.8

Q ss_pred             CCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc--ccchHHHHHHHHHHhcCccCC
Q psy15955        357 PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN--WNNVDEELLNFSQSYNSTPHT  434 (475)
Q Consensus       357 p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~--~~~~~~~l~~~l~~y~~~~~~  434 (475)
                      +....++.+.-+.+..|..+|...|+.+..+.+++|+.||.+||+|++++..+.+..  ...|...|..+++.||..||.
T Consensus        61 ~~~i~sDnG~eF~s~~~~~~~~~~gI~~~~s~p~~P~~NG~vEr~n~tlk~~l~~~~~~~~~~~~~l~~~~~~~n~~~~~  140 (239)
T 1ex4_A           61 VKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKG  140 (239)
T ss_dssp             CCEEEECCCHHHHCHHHHHHHTTTTCEECCCCC---CSSHHHHHHHHHHHHHHHHHGGGCSSSHHHHHHHHHHHHHCCSS
T ss_pred             CcEEEecCcHHHHHHHHHHHHHHCCCeEEECCCCCcccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCccC
Confidence            345667888888888899999999999999999999999999999999999886653  377999999999999999998


Q ss_pred             CC-CCChhhhhcCCc
Q psy15955        435 TL-GVSPAELHLGRK  448 (475)
Q Consensus       435 ~~-~~sP~~l~~gr~  448 (475)
                      .+ |.||+|+++|..
T Consensus       141 ~l~~~TP~e~~~~~~  155 (239)
T 1ex4_A          141 GIGGYSAGERIVDII  155 (239)
T ss_dssp             SSSCCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHhcCC
Confidence            87 599999999844

>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A

Probab=98.64  E-value=2e-09  Score=95.36  Aligned_cols=90  Identities=13%  Similarity=0.099  Sum_probs=76.3

Q ss_pred             CcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc--ccchHHHHHHHHHHhcCccCCC
Q psy15955        358 RQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN--WNNVDEELLNFSQSYNSTPHTT  435 (475)
Q Consensus       358 ~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~--~~~~~~~l~~~l~~y~~~~~~~  435 (475)
                      ....++.+..+.+..|..+|...|+.+..+++++|+.||.+||++++++..+++..  ...|.+.|..+++.||..++..
T Consensus        82 ~~i~sDnG~ef~s~~~~~~~~~~gI~~~~s~p~~P~~nG~vEr~~~tlk~~l~~~~~~~~~~~~~l~~~~~~yN~~~~~~  161 (183)
T 3av9_A           82 KTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGG  161 (183)
T ss_dssp             CEEECSSHHHHHCHHHHHHHHHHTCEEECCCCSSHHHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHCBCC-
T ss_pred             cEEEecCchhcchHHHHHHHHHCCCEEeecCCCCCcchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCCC
Confidence            34456667777788899999999999999999999999999999999999987642  3779999999999999999877


Q ss_pred             C-CCChhhhhcCC
Q psy15955        436 L-GVSPAELHLGR  447 (475)
Q Consensus       436 ~-~~sP~~l~~gr  447 (475)
                      + |.||+|++++.
T Consensus       162 l~~~tP~e~~~~~  174 (183)
T 3av9_A          162 IGGYSAGERIVDI  174 (183)
T ss_dssp             ---CBHHHHHHHH
T ss_pred             CCCCCHHHHHhcc
Confidence            7 79999999764

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.22  E-value=1.8e-05  Score=63.34  Aligned_cols=107  Identities=17%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             eeEEEEEEeec--cCcccccCCCccceEEEEEEeCceeeeeeec-ccccCCCCCeecceEEEeecccccccceEEEEEEe
Q psy15955        245 SVLTITLLKAR--NLKAKDINGKSDPYVKVWLQFGEKRIEKRKT-QIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMD  321 (475)
Q Consensus       245 ~~L~v~v~~a~--~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T-~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d  321 (475)
                      ..|+|.+.++.  .|+.  .....|||+.|.+..... ..+.+| ...++|..|.||++|.-.|..    ++.|.|.|++
T Consensus         6 ~flRi~~~~~~~~~~~~--~~~~lDPy~aV~vdE~~~-~e~g~t~~~K~kT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh   78 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQA--EDEANQPFCAVKMKEALS-TERGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMR   78 (126)
T ss_dssp             CEEEEEEEEEECSSCCC--SSSSCCCEEEEEEEEEEE-ETTEEEEECCSCCBCCCTTCEEEEECCT----TCEEEEEEEE
T ss_pred             ccEEeeeccccccccCC--ccccCCceEEEEeeeeEE-cccceeecccCCCCCcCccceEEeeeeC----CEEEEEEEEc
Confidence            45666654443  3332  234689999997742111 112244 666789999999998888763    5689999997


Q ss_pred             ccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCC
Q psy15955        322 FDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDH  371 (475)
Q Consensus       322 ~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~  371 (475)
                      ...    +|++.|+|++.++..         -....+.....|..|.+.+
T Consensus        79 ~a~----~fvAn~tV~~edL~~---------~c~~~~g~~e~WvdLeP~G  115 (126)
T 1yrk_A           79 AAE----EPVSEVTVGVSVLAE---------RCKKNNGKAEFWLDLQPQA  115 (126)
T ss_dssp             ETT----EEEEEEEEEHHHHHH---------HHHTTTTEEEEEEECBSSC
T ss_pred             CCC----CeeeEEEEEHHHHHh---------hhccCCCceEEEEecccCc
Confidence            553    999999996633221         0001234667788887754

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.07  E-value=2.3e-05  Score=63.56  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=67.0

Q ss_pred             eeEEEEEEeeccCcccc-cCCCccceEEEEEEeCceeeeeeec-ccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        245 SVLTITLLKARNLKAKD-INGKSDPYVKVWLQFGEKRIEKRKT-QIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~~T-~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      ..|+|.+.+..--+... .....|||+.|.+...- ...+.+| ...++|..|.||++|.-.|.    ..+.|.|.|++.
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~-~te~gqtl~~KkkT~~P~Wne~Fd~~V~----~Gr~l~i~Vfh~   84 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYV-ESENGQMYIQKKPTMYPPWDSTFDAHIN----KGRVMQIIVKGK   84 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEE-EETTEEEEEEEEEEECCCSSSEEEECCC----SSCEEEEEEECS
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeee-eccCceeecccCCCCCccccceEeeeEE----CCeEEEEEEEcC
Confidence            45666654444322221 12357999999774221 1112345 55667899999999887776    356899999965


Q ss_pred             cCCCCCeeeEEEEEcCcCCCCCcccccccccccC---CCcceeeeeccCCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGSGASETKHWQDMITK---PRQTIVQWHRLKPDH  371 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~---p~~~~s~w~~L~~s~  371 (475)
                      ..    +|+..|+|++.+            +...   .+.....|..|.+.+
T Consensus        85 a~----~fVAn~tV~~ed------------L~~~ck~~~g~~e~WvdLeP~G  120 (138)
T 2enj_A           85 NV----DLISETTVELYS------------LAERCRKNNGKTEIWLELKPQG  120 (138)
T ss_dssp             SC----SCCEEEEEESHH------------HHHHHHHTTTCEEEEEECBSSC
T ss_pred             CC----CeeeEEEEEHHH------------HHhhhccCCCceEEEEecccCc
Confidence            43    899999997643            2221   234567787787754

>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A

Probab=96.73  E-value=0.00057  Score=65.85  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             CCC--cceeeeeccCCCCcc-------------c----ceeecccceecccCCC----CCCCCCchhhhh--HHHHHHhh
Q psy15955        356 KPR--QTIVQWHRLKPDHEM-------------Q----TFLQSVGVSHIRIPTY----HPASNGAAENMV--GVVKRFLR  410 (475)
Q Consensus       356 ~p~--~~~s~w~~L~~s~~f-------------~----~~~~~~g~~~~~~~~~----~pqsnG~~er~~--~~lk~~l~  410 (475)
                      .|.  ...++.+..+.+..+             +    .+|..+||.+..+.++    +|+.|| +||++  ++++..+.
T Consensus        80 ~P~~~~i~sDnG~~f~s~~~~g~~~~~~~~~~~~~~~~~~~~~lgI~~~~~~p~~~~g~p~~kg-iEr~f~~~tlk~~~~  158 (327)
T 1bco_A           80 IPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKP-VERAFGVGGLEEYVD  158 (327)
T ss_dssp             EESSCEEECCCTTSTTTTTTSCCCTTTTBSCBCCCCHHHHHHHHTCEEECSSSCTTCCCCCSSC-SSGGGSGGGGGGTTT
T ss_pred             CCCCcEEEeeCchhhccccccccccccccccccccchhhHHHhcCeEEEecCcccCCCCCCccc-eeeeeccCcHhHHhc
Confidence            355  566777777766666             2    5889999999999999    999999 99999  99998774


Q ss_pred             hcc------------------------ccchHHHHHHHHHHhcCccCCCC----CC-Chhhhhc
Q psy15955        411 KCN------------------------WNNVDEELLNFSQSYNSTPHTTL----GV-SPAELHL  445 (475)
Q Consensus       411 ~~~------------------------~~~~~~~l~~~l~~y~~~~~~~~----~~-sP~~l~~  445 (475)
                      +..                        ..+....|..++..||..||..+    |. ||.|++-
T Consensus       159 ~~~~~~g~~~g~~~~~~~~~~~~~~~t~~e~~~~l~~~i~~YN~r~h~~l~~~~g~~tP~e~~~  222 (327)
T 1bco_A          159 KHPALAGAYTGPNPQAKPDNYGDRAVDAELFLKTLAEGVAMFNARTGRETEMCGGKLSFDDVFE  222 (327)
T ss_dssp             TCGGGTTTBCCC--------CTTTCEEHHHHHHHHHHHHHHHHHCCCCCSTTTTTTCCHHHHHH
T ss_pred             cCCccccccCCCChhhhhhhhccCCCCHHHHHHHHHHHHHHHhCCCCccccccCCCCCHHHHHH
Confidence            331                        13345667778888999999863    64 9999875

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=94.32  E-value=0.24  Score=53.87  Aligned_cols=97  Identities=13%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEE
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVM  320 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~  320 (475)
                      -...+.|.|..+.++...   ...+-||.+.+..+++... ...|..+....+|.|||.+.|++...+|. ++.|.|+||
T Consensus       215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            456899999999998654   3468899998877776553 23455555577899999999998777764 567999999


Q ss_pred             eccCC--C----------CCeeeEEEEEcCcCCC
Q psy15955        321 DFDNI--G----------RNELIGRILLAGKNGS  342 (475)
Q Consensus       321 d~~~~--~----------~d~~lG~~~i~l~~~~  342 (475)
                      +....  +          .+..||.+.+++.+..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCTT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECCc
Confidence            96432  1          2469999999987643

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=94.07  E-value=0.26  Score=54.05  Aligned_cols=97  Identities=16%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeee-eecccccCCCCCeecceEEEeecccccc-cceEEEEEE
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEK-RKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVM  320 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~-~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~  320 (475)
                      ....+.|+|..+.++.... ....+-||++.+..+++.... ..|.. ....+|.|||.+.|++...+|. .+.|.|+||
T Consensus       353 ~~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence            3568899999998876432 334688999999877765533 33443 3356788999999998777765 467999999


Q ss_pred             eccCC----CCCeeeEEEEEcCcCC
Q psy15955        321 DFDNI----GRNELIGRILLAGKNG  341 (475)
Q Consensus       321 d~~~~----~~d~~lG~~~i~l~~~  341 (475)
                      +....    ..+..||.+.+++.+.
T Consensus       431 ~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          431 SVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCCC-------CCEEEEEESBCT
T ss_pred             EecCccCcccccceeEEeeeeeEcc
Confidence            86642    1346899999998764

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.06  E-value=0.34  Score=42.84  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             ceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        151 HRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       151 ~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      ..++|.|...+.+|.|+|++.+. +|.+.....-|.|++++...
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~-LP~~~~~~~HLlFtFrH~S~  119 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVA-IPIEDVNRSHLRFTFRHRSS  119 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEE-ECTTSSTTEEEEEEEEECCC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEe-eChhhcCCeEEEEEEEEecc
Confidence            35788899999999999999999 88888888899999987653

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=93.89  E-value=0.85  Score=40.30  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=46.1

Q ss_pred             eeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC----CCeeeEEEEEcC
Q psy15955        281 IEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG----RNELIGRILLAG  338 (475)
Q Consensus       281 ~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~----~d~~lG~~~i~l  338 (475)
                      ...++|.+...+.+|.|+|++.+.+|.+.....-|.|++++.....    .+..+|-+.++|
T Consensus        76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL  137 (220)
T 3l4c_A           76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKL  137 (220)
T ss_dssp             BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEES
T ss_pred             ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEc
Confidence            3456888888899999999999999999888888999998765421    124678877766

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=90.61  E-value=0.36  Score=53.13  Aligned_cols=96  Identities=15%  Similarity=0.122  Sum_probs=67.8

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeee-eeecccccCCCCCeecceEEEeecccccc-cceEEEEEE
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIE-KRKTQIFKCNLNPVFNESFSFNVPWEKIR-ECSLNVMVM  320 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~v~~~~l~-~~~l~i~V~  320 (475)
                      -...+.|.|..+.++...   ...+-||.+.+..+++... ...|..+....+|.|||.+.|++...+|. ++.|.|+||
T Consensus       351 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          351 NNNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVY  427 (1092)
T ss_dssp             CCSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred             cCCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence            356899999999998654   3568999988877776553 23455555577899999999998777765 567999999


Q ss_pred             eccCC----------------------CCCeeeEEEEEcCcCC
Q psy15955        321 DFDNI----------------------GRNELIGRILLAGKNG  341 (475)
Q Consensus       321 d~~~~----------------------~~d~~lG~~~i~l~~~  341 (475)
                      +....                      +.+..||.+.+++.+.
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  470 (1092)
T 2y3a_A          428 AVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF  470 (1092)
T ss_dssp             CC------------------------------CCEEEEESBCT
T ss_pred             EecCccccccccccccccccccccccccccceeEEEeeeeECC
Confidence            86311                      1134899999988763

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=90.31  E-value=0.87  Score=49.50  Aligned_cols=95  Identities=15%  Similarity=0.204  Sum_probs=63.9

Q ss_pred             CCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEE
Q psy15955        113 FDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLH  188 (475)
Q Consensus       113 ~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~  188 (475)
                      .-...+.|+|.++.++...   ..++-||.+.+.-++..   ...|..+.-..+|.|||...|. +...++ ....|.|+
T Consensus       214 ~~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~t  289 (940)
T 2wxf_A          214 SLEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCFA  289 (940)
T ss_dssp             TCCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEEE
T ss_pred             hcCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcc-cccccCCcccEEEEE
Confidence            3567899999999999754   34678888887533321   2345555556789999999998 666555 56789999


Q ss_pred             EEeeCCC--C----------CCccccceeeccccc
Q psy15955        189 VFDYDRF--S----------RDDSIGEVFLPLCQV  211 (475)
Q Consensus       189 V~d~d~~--~----------~~~~iG~~~i~l~~l  211 (475)
                      ||+....  +          .+..||.+.++|-+-
T Consensus       290 i~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          290 LYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEEEC----------------CEEEEEEEEESBCT
T ss_pred             EEEecCCccCccccccccccccceEEEEeeeEECC
Confidence            9997431  1          134677777777553

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=87.37  E-value=1.1  Score=37.34  Aligned_cols=123  Identities=13%  Similarity=0.118  Sum_probs=75.9

Q ss_pred             CCCEEEEEEEEeecCCCCC--CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccc-----cccceEE
Q psy15955        114 DNSTLILRVISAKELPAKD--MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQK-----LQSRVLH  186 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~--~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~-----~~~~~L~  186 (475)
                      ..+.+.|+|.++. +.+..  ..+..+|..-+.+.=-+-+...|.++. +.+|.||-+-.|. +.+.+     ++...|.
T Consensus        16 gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~-V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           16 GENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYL-VHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             SCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEE-ECCSHHHHHHHHHCCEE
T ss_pred             CCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEE-EEeCHHHHHHHhcCCEE
Confidence            4567888888776 32211  112345655555421244455666666 8899999887776 44433     3346799


Q ss_pred             EEEEeeCCCCCCccccceeeccccccCCCC-cceeeccCCCCC--Ccccceeeeeee
Q psy15955        187 LHVFDYDRFSRDDSIGEVFLPLCQVDLSEK-PTFWKALKPPAK--DKCGELLTSLCY  240 (475)
Q Consensus       187 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~--~~~G~l~l~l~~  240 (475)
                      ++++.... ..-..||.+.|+|.++..... .....+|....+  ..-|.|.+.++.
T Consensus        93 lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL  148 (156)
T 2yrb_A           93 LEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRL  148 (156)
T ss_dssp             EEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred             EEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEE
Confidence            99998753 345789999999999875533 234456655444  345666665554

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=86.76  E-value=3  Score=45.78  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=64.7

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc---eEEeeeecCCCCceeeeeEEeeccccccc-ccceEEEEE
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH---RLETKIKRRTLNPRWNETLYFEGFPIQKL-QSRVLHLHV  189 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~---~~kT~v~~~~~nP~w~e~f~f~~~~~~~~-~~~~L~~~V  189 (475)
                      -...+.|+|+++.++.... ....+-||.+.+.-++..   ..+|+.+. ..+|.|||...|. +.+.++ ..+.|.|+|
T Consensus       353 ~~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~-i~i~dLPr~arL~~tl  429 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYD-IYIPDLPRAARLCLSI  429 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEE-EEGGGCCTTCEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEec-CccccCChhcEEEEEE
Confidence            4668999999998887433 334678999998644332   23344333 4578899999998 666655 457899999


Q ss_pred             EeeCCC----CCCccccceeeccccc
Q psy15955        190 FDYDRF----SRDDSIGEVFLPLCQV  211 (475)
Q Consensus       190 ~d~d~~----~~~~~iG~~~i~l~~l  211 (475)
                      |+....    +.+..||.+.++|-+.
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBCT
T ss_pred             EEecCccCcccccceeEEeeeeeEcc
Confidence            987642    1245788888888664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	475
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-42
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-29
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-40
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-26
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-38
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-30
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	7e-38
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-25
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	8e-36
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-25
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-35
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-27
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-33
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-22
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	7e-29
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	6e-21
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-27
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-24
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-26
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-23
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	6e-23
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	5e-21
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-22
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	6e-17
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	9e-21
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-14
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	9e-18
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	6e-12
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	9e-16
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-15
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-15
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-14
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-10
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	6e-14
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	6e-08
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	9e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	5e-11
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	5e-12
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-09

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  144 bits (365), Expect = 2e-42
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 2/136 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           GELL SLCY  + + LT+ +LKAR+L   D++G SDPYVKV L   +KRI K+KT + KC
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
             N VFNE F F++P E + E S+  +V+D +   RNE+IGR++L G    G S   HW+
Sbjct: 62  TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL-GATAEG-SGGGHWK 119

Query: 352 DMITKPRQTIVQWHRL 367
           ++   PR+ I +WH L
Sbjct: 120 EICDFPRRQIAKWHML 135

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  109 bits (274), Expect = 3e-29
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRR 160
           G++  SL Y    +TL + V+ A+ LP  D+SG SDPYVKV L   KK   + +T +K+ 
Sbjct: 2   GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           T N  +NE   F+  P + L+   +   V D +R SR++ IG + L       S    + 
Sbjct: 62  TPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEG-SGGGHWK 119

Query: 221 KALKPPAK 228
           +    P +
Sbjct: 120 EICDFPRR 127

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  139 bits (350), Expect = 6e-40
 Identities = 67/145 (46%), Positives = 101/145 (69%), Gaps = 2/145 (1%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           +K G++  SL Y P+   LT+ +L+A+NLK  D+ G SDPYVK+ L    KR++K+KT I
Sbjct: 9   EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  LNP +NESFSF VP+E+I++  + V V+D+D IG+N+ IG++ + G N +G +E +
Sbjct: 69  KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV-GYNSTG-AELR 126

Query: 349 HWQDMITKPRQTIVQWHRLKPDHEM 373
           HW DM+  PR+ I QWH L+ + E+
Sbjct: 127 HWSDMLANPRRPIAQWHTLQVEEEV 151

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (255), Expect = 2e-26
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 15/143 (10%)

Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRL--ETKI 157
           E +G I FSL Y      L + ++ AK L   D+ G SDPYVK+ L+ + K     +T I
Sbjct: 9   EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68

Query: 158 KRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV------ 211
           K+ TLNP +NE+  FE  P +++Q   + + V DYD+  ++D+IG+VF+           
Sbjct: 69  KKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRH 127

Query: 212 --DLSEKP----TFWKALKPPAK 228
             D+   P      W  L+   +
Sbjct: 128 WSDMLANPRRPIAQWHTLQVEEE 150

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  134 bits (339), Expect = 1e-38
 Identities = 64/140 (45%), Positives = 92/140 (65%), Gaps = 3/140 (2%)

Query: 87  SLVDMYIDNTEP--SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVA 144
            ++D  ++  EP   E +G++ +SL+YDF N+ L++ +I A ELPA DM GTSDPYVKV 
Sbjct: 3   GILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVF 62

Query: 145 LLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEV 204
           LLPDKK + ETK+ R+TLNP +NE   F+  P  +L  + L + V+D+DRFS+ D IGE 
Sbjct: 63  LLPDKKKKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEF 121

Query: 205 FLPLCQVDLSEKPTFWKALK 224
            +P+  VD       W+ L+
Sbjct: 122 KVPMNTVDFGHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (280), Expect = 4e-30
 Identities = 46/130 (35%), Positives = 77/130 (59%), Gaps = 2/130 (1%)

Query: 224 KPPAKDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEK 283
           +P  ++K G+L  SL Y   N+ L + +++A  L A D+ G SDPYVKV+L   +K+  K
Sbjct: 13  EPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--K 70

Query: 284 RKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSG 343
            +T++ +  LNPVFNE F+F VP+ ++   +L + V DFD   ++++IG   +       
Sbjct: 71  FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130

Query: 344 ASETKHWQDM 353
              T+ W+D+
Sbjct: 131 GHVTEEWRDL 140

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  133 bits (335), Expect = 7e-38
 Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQ 287
           K   GEL  SLCY P+  +LT+T++KA NLKA D+ G SDPYVK  L    +R++KRKT 
Sbjct: 3   KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTS 62

Query: 288 IFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASET 347
           I K  LNP +NE+  F+V  E +    L++ V+D+D IG NE+IG   + G   +     
Sbjct: 63  IKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV-GPEAADPHGR 121

Query: 348 KHWQDMITKPRQTIVQWHRLKP 369
           +HW +M+  PR+ +  WH+L  
Sbjct: 122 EHWAEMLANPRKPVEHWHQLVE 143

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.7 bits (245), Expect = 3e-25
 Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 3/132 (2%)

Query: 99  SENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETK 156
             ++G+++FSL Y      L + +I A  L A D++G SDPYVK +L+ + +   + +T 
Sbjct: 3   KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTS 62

Query: 157 IKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK 216
           IK+ TLNP +NE L F+    + +++  L + V DYD    ++ IG   +     D   +
Sbjct: 63  IKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 121

Query: 217 PTFWKALKPPAK 228
             + + L  P K
Sbjct: 122 EHWAEMLANPRK 133

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  127 bits (320), Expect = 8e-36
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G++L SL Y      L + +++  +L A D NG SDP+VK+WL+    +  K KTQI K 
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 292 NLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQ 351
            LNP FNE F +++    + + SL++ V D+D    N+ IG   L           KHW 
Sbjct: 62  TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWY 119

Query: 352 DMITKPRQTIVQWHRLK 368
           + +    + I +WH+L+
Sbjct: 120 ECLKNKDKKIERWHQLQ 136

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.1 bits (246), Expect = 2e-25
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 5/125 (4%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRR 160
           G+I  SL Y      LI+ +I    L A D +G SDP+VK+ L PD     + +T+IK++
Sbjct: 2   GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFW 220
           TLNP +NE  +++      L  + L + V+DYD    +D IG   L +      E+   W
Sbjct: 62  TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHW 118

Query: 221 KALKP 225
                
Sbjct: 119 YECLK 123

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 2e-35
 Identities = 37/126 (29%), Positives = 70/126 (55%), Gaps = 5/126 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRR 160
           GQ+   L +D     LI+ ++ AK+LP+++     +PYVK+  LPD+  K++  TK  ++
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 161 TLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS--RDDSIGEVFLPLCQVDLSEKPT 218
           TL P+WN+T  +     ++ + R+L + ++D  R      + +GE+ + L    L ++P 
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120

Query: 219 FWKALK 224
            W  L+
Sbjct: 121 -WYKLQ 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 3e-27
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKC 291
           G+L   L +      L +T+L A++L +++     +PYVK++         KR+T+  K 
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60

Query: 292 NLNPVFNESFSFN-VPWEKIRECSLNVMVMDFDNIG--RNELIGRILLAGKNGSGASETK 348
            L P +N++F ++ V   + RE  L + + D   +    +E +G IL+     +   +  
Sbjct: 61  TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILI-ELETALLDDEP 119

Query: 349 HW 350
           HW
Sbjct: 120 HW 121

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 1e-33
 Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 96  TEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKD-MSGTSDPYVKVALLPDKKHRLE 154
           +  S  +G + FSLEY+F+    ++ +  A+ LPA D  S TSDPY+K+ +LP+KKH+++
Sbjct: 2   SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61

Query: 155 TKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS 214
           T++ R+TL+P ++ET  F G P  ++Q   LH  +  +DRFSRDD IGEV +PL  ++LS
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121

Query: 215 EKPTFWK 221
           E      
Sbjct: 122 EGKMLMN 128

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 7e-22
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGK-SDPYVKVWLQFGEKRIEKRKTQI 288
             G L  SL Y+       + + +AR L A D     SDPY+K+ +   +K   K KT++
Sbjct: 7   GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRV 64

Query: 289 FKCNLNPVFNESFS-FNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLA-GKNGSGASE 346
            +  L+P F+E+F+ + +P+ +I+E +L+  ++ FD   R+++IG +L+          +
Sbjct: 65  LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124

Query: 347 TKHWQDMITKP 357
               +++I+ P
Sbjct: 125 MLMNREIISGP 135

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (271), Expect = 7e-29
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 13/134 (9%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK-----------KH 151
           G+I   + YD     LI+ ++ A+ L  +D +G SDP+VKV LLP +           ++
Sbjct: 7   GEIQLQINYDL--GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 152 RLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV 211
           +  TK  +++LNP WN+T+ ++   +++L  + L + V+DYDRFS +D +GEV + L   
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 212 DLSEKPTFWKALKP 225
              +    W  LK 
Sbjct: 125 SHLDNTPRWYPLKE 138

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.5 bits (213), Expect = 6e-21
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI---------E 282
           GE+   + Y      L I +L+ARNL  +D NG SDP+VKV+L  G  ++          
Sbjct: 7   GEIQLQINY--DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64

Query: 283 KRKTQIFKCNLNPVFNESFSF-NVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNG 341
           KR+T+  + +LNP +N++  + ++  E++ + +L V V D+D    N+ +G +L+   + 
Sbjct: 65  KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

Query: 342 SGASETKHWQDM 353
           S    T  W  +
Sbjct: 125 SHLDNTPRWYPL 136

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 2e-27
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK--HRLETKI 157
           E  G+I+     D     LI+ V  AK L   D +G SDPYVK+ L+PD K   + +TK 
Sbjct: 1   ERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT 58

Query: 158 KRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP 217
            + +LNP WNET  F+       + R L + ++D+D  SR+D +G +   + ++  +   
Sbjct: 59  IKCSLNPEWNETFRFQLKE--SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 116

Query: 218 TFWKALKPPAKDKC 231
             W  L    + + 
Sbjct: 117 G-WFKLLSQEEGEY 129

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.7 bits (240), Expect = 1e-24
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIF 289
           + G +           VL + +  A+NL   D NG SDPYVK+ L    K   K+KT+  
Sbjct: 2   RRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 59

Query: 290 KCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKH 349
           KC+LNP +NE+F F +  E  ++  L+V + D+D   RN+ +G +          +    
Sbjct: 60  KCSLNPEWNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK-AGVDG 117

Query: 350 WQDMITKP 357
           W  ++++ 
Sbjct: 118 WFKLLSQE 125

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 57/126 (45%), Positives = 85/126 (67%), Gaps = 5/126 (3%)

Query: 103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTL 162
           G+I F+L Y + +  L++R++ A +LPAKD +G SDPYVK+ LLPD+K + +TK+ R+TL
Sbjct: 5   GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTL 64

Query: 163 NPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKP---TF 219
           NP +NET  F   P+ +L  R LH  V+D+DRFSR D IG+V L    ++L+E+P     
Sbjct: 65  NPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDN-LLELAEQPPDRPL 122

Query: 220 WKALKP 225
           W+ +  
Sbjct: 123 WRDILE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.3 bits (228), Expect = 4e-23
 Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 4/128 (3%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
             CG +  +L Y   +  L + +L+A +L AKD NG SDPYVK++      R +K +T++
Sbjct: 2   APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIY--LLPDRKKKFQTKV 59

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIG--RILLAGKNGSGASE 346
            +  LNP+FNE+F F+VP  ++ +  L+  V DFD   R++LIG   +    +      +
Sbjct: 60  HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 119

Query: 347 TKHWQDMI 354
              W+D++
Sbjct: 120 RPLWRDIL 127

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 6e-23
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 5/135 (3%)

Query: 95  NTEPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK-HRL 153
           ++       ++H+ L+YD   + L +  + A      +  G  D YV+ ++         
Sbjct: 5   SSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEA 61

Query: 154 ETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDL 213
           +T +K+R L+  W E L       ++L +  L L +   DRFSR    GE+ L L    +
Sbjct: 62  QTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV 120

Query: 214 SEKPTFWKALKPPAK 228
                 W  LK    
Sbjct: 121 PLGAAQWGELKTSGP 135

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 5e-21
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQI 288
           ++  +L   L Y    + L +T L+A      + +G  D YV+           + +T +
Sbjct: 10  NQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGS-VANRTGSVEAQTAL 65

Query: 289 FKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETK 348
            K  L+  + E     +  E++   +L + +   D   R+ + G + L     S      
Sbjct: 66  KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA 125

Query: 349 HWQDMITK 356
            W ++ T 
Sbjct: 126 QWGELKTS 133

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.2 bits (223), Expect = 3e-22
 Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
           TL + ++SAK L   D     DPYV++      +       +     P WNET  F    
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSE 68

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLT 236
                +  L   +FD D  + DD++GE  +PL  V +              ++  GE+  
Sbjct: 69  ----GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWV 124

Query: 237 SLCYHPSN 244
           +L + PS 
Sbjct: 125 ALSFKPSG 132

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.2 bits (184), Expect = 6e-17
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
            L + L+ A+ L+  D     DPYV++  +      +++          P +NE+F F V
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRT----QDQKSNVAEGMGTTPEWNETFIFTV 66

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
                    L   + D D    ++ +G   +
Sbjct: 67  SEG---TTELKAKIFDKDVGTEDDAVGEATI 94

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 9e-21
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 118 LILRVISAKELP---AKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEG 174
             + V+ A ++      DM  T DPYV++ +      R  T+     +NP WNET  F  
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 175 FPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAK 228
            P    Q  VL + + D +    D+++G     +  + + EK           +
Sbjct: 65  DP---NQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 114

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 22/135 (16%)

Query: 243 SNSVLTITLLKARNLK---AKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNE 299
           S+   T+ +L+A  +      D+    DPYV++++        +++T+ F  ++NPV+NE
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFI--STTPDSRKRTRHFNNDINPVWNE 58

Query: 300 SFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQ 359
           +F F +   +     + +M  ++     +E +G       +               K  +
Sbjct: 59  TFEFILDPNQENVLEITLMDANY---VMDETLGTATFTVSS--------------MKVGE 101

Query: 360 TIVQWHRLKPDHEMQ 374
                       EM 
Sbjct: 102 KKEVPFIFNQVTEMV 116

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (189), Expect = 9e-18
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP 176
            L ++V+ A +L A D SG SDP+  +        RL+T    + LNP WN+   F    
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLL---ELGNDRLQTHTVYKNLNPEWNKVFTFPIKD 63

Query: 177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLT 236
           I      VL + VFD D     D +G+V +PL  +   +   +    K   +   G +  
Sbjct: 64  IH----DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYL 119

Query: 237 SL 238
            +
Sbjct: 120 EM 121

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 246 VLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNV 305
           +L + +LKA +L A D +GKSDP+  +         ++ +T     NLNP +N+ F+F +
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLE-----LGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 306 PWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
             +        V V D D     + +G++ +
Sbjct: 62  -KDIHDVLE--VTVFDEDGDKPPDFLGKVAI 89

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 9e-16
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           S L + VISAK    K       PYV+V +    K     +    T +P+W + L     
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKT---EKCNNTNSPKWKQPLTVIVT 62

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLS-----EKPTFWKALKPPAK-- 228
           P+ K     LH  V+ +     D  +G   L + +   S     E+      L    +  
Sbjct: 63  PVSK-----LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPT 117

Query: 229 DKCGELLTSL 238
           +  G+L   L
Sbjct: 118 ETIGDLSICL 127

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
           S L IT++ A+  + K       PYV+V +       + +KT+      +P + +  +  
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLTVI 60

Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           V         L+  V     +  + L+G   L
Sbjct: 61  VT----PVSKLHFRVWSHQTLKSDVLLGTAAL 88

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 240 YHPSNSVLTITLLKARNL--KAKDINGKSDPYVKVWLQFGEKRIEKRKTQ-IFKCNLNPV 296
           + P    L + ++  + L    K+ N   DP V V +    +    R+T  I     NP 
Sbjct: 1   WRPER--LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPR 58

Query: 297 FNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILL 336
           ++  F F V    +       MV D+D+  +N+ IG+  +
Sbjct: 59  WDMEFEFEVTVPDLALVR--FMVEDYDSSSKNDFIGQSTI 96

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 117 TLILRVISAKELPAKDM--SGTSDPYVKVALLP---DKKHRLETKIKRRTLNPRWNETLY 171
            L +R+IS ++LP  +   +   DP V V +     D   R    I     NPRW+    
Sbjct: 5   RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64

Query: 172 FEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQ 210
           F    +      ++   V DYD  S++D IG+  +P   
Sbjct: 65  F---EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 100

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 21/127 (16%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALL-----PDKKHRLETKIKRRTLNPRWNETL 170
           +TL + VIS + L  +        YV+V L      P +++R +      ++NP W E  
Sbjct: 1   TTLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEP 56

Query: 171 YFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK 230
            F    I   +   L + V +      +  +G   +P+     +    +          +
Sbjct: 57  -FVFEKILMPELASLRVAVMEEG----NKFLGHRIIPIN----ALNSGYHHL---CLHSE 104

Query: 231 CGELLTS 237
               LT 
Sbjct: 105 SNMPLTM 111

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQ---FGEKRIEKRKTQIFKCNLNPVFNESF 301
           + L+IT++  + L  + +      YV+V L       KR  + K      ++NPV+ E  
Sbjct: 1   TTLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEP 56

Query: 302 SFNVPWEKIRECSLNVMVMDFDN 324
                       SL V VM+  N
Sbjct: 57  FVFEKILMPELASLRVAVMEEGN 79

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 6e-14
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 15/129 (11%)

Query: 119 ILRV-ISAKEL-PAKDMSGTSDPYVKVALLPDKKHR--LETKIKRRTLNPRWNETLYFEG 174
            LR+  ++ EL   +     S P+  V +              K+ T+ P W  T     
Sbjct: 4   FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH- 62

Query: 175 FPIQKLQSRVLHLHVFDYDRFSR-DDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGE 233
                 + RV+ + +         + ++G   L       + K  FW  L+P       +
Sbjct: 63  ----IYEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-----AK 113

Query: 234 LLTSLCYHP 242
           +L  + Y  
Sbjct: 114 VLMCVQYFL 122

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.0 bits (116), Expect = 6e-08
 Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 17/123 (13%)

Query: 247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVP 306
           L I+         +  +  S P+  V ++        +     K  + P +  +F  ++ 
Sbjct: 5   LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64

Query: 307 WEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHR 366
                   + +++M       +E+   +                 +   K       W  
Sbjct: 65  ----EGRVIQIVLMRAAEDPMSEVTVGV-------------SVLAERCKKNNGKAEFWLD 107

Query: 367 LKP 369
           L+P
Sbjct: 108 LQP 110

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 66.1 bits (160), Expect = 9e-14
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 25/143 (17%)

Query: 115 NSTLILRVISAKELPAKDMS-----------GTSDPYVKVALLPDKKHRLETKIKRRTLN 163
           N  L +++  A  L     S              DPY+ +    D     +T  K++T +
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN--VDDSRIGQTATKQKTNS 62

Query: 164 PRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQV--DLSEKPTFWK 221
           P W++    +         R + L VF       DD +    +   ++  + S     W 
Sbjct: 63  PAWHDEFVTDVC-----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117

Query: 222 ALKPPAKDKCGELLTSLCYHPSN 244
            L+P      G++   +    S+
Sbjct: 118 DLEP-----EGKVYVIIDLSGSS 135

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 58.0 bits (139), Expect = 5e-11
 Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 31/137 (22%)

Query: 244 NSVLTITLLKARNLKAKDI-----------NGKSDPYVKVWLQFGEKRIEKRKTQIFKCN 292
           N +L I + +A +LK                   DPY+ +            +T   +  
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN----VDDSRIGQTATKQKT 60

Query: 293 LNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQD 352
            +P +++ F  +V         + + V     IG ++ +    +             +++
Sbjct: 61  NSPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTI------------QFEE 104

Query: 353 MITKPRQTIVQWHRLKP 369
           ++    +    W  L+P
Sbjct: 105 LLQNGSRHFEDWIDLEP 121

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.9 bits (147), Expect = 5e-12
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 116 STLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGF 175
           S L + V  AK   A++     + YV    L  +  +  T    R   P W +   FE  
Sbjct: 2   SLLCVGVKKAKFDGAQE---KFNTYVT---LKVQNVKSTTIAV-RGSQPSWEQDFMFEIN 54

Query: 176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK--PTFWKALKPPAKDKCGE 233
            +         + V++      D  +G V++PL  +  S +  P  W  L   A     E
Sbjct: 55  RLDLGL----TVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 109

Query: 234 L 234
           +
Sbjct: 110 I 110

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.0 bits (129), Expect = 1e-09
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 25/129 (19%)

Query: 245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN 304
           S+L + + KA+   A++   K + YV + +Q       K  T   +    P + + F F 
Sbjct: 2   SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ-----NVKSTTIAVR-GSQPSWEQDFMFE 52

Query: 305 VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQW 364
           +        ++ V          + ++G + +              + +     +   +W
Sbjct: 53  I-NRLDLGLTVEVWNKGLI---WDTMVGTVWIP------------LRTIRQSNEEGPGEW 96

Query: 365 HRLKPDHEM 373
             L     M
Sbjct: 97  LTLDSQAIM 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	475
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.93
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.92
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.91
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.91
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.9
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.9
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.89
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.89
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.88
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.88
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.87
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.87
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.87
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.86
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.86
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.85
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.84
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.84
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.84
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.83
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.83
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.83
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.82
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.8
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.78
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.77
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.75
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.7
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.68
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.66
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.64
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.63
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.6
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.6
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.55
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.55
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.53
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.34
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.3
d1c6va_	159	Retroviral integrase, catalytic domain {Simian imm	99.28
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	99.2
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	98.38
d2zkmx4	349	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.22
d1qasa3	327	Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n	98.04
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.72
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	95.0
d1bcoa2	223	mu transposase, core domain {Bacteriophage mu [Tax	93.64

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.1e-25  Score=189.49  Aligned_cols=137  Identities=45%  Similarity=0.795  Sum_probs=121.0

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      +|+|.++++|.|..+.|.|.|++|+||+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..++
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~   80 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHh
Confidence            59999999999999999999999999999999999999999999888777778899999999999999999999998888


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKP  369 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~  369 (475)
                      ....|.|+|||++.++++++||++.|++..  .+.+..||.+++..|++.+..||.|..
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~--~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          81 EEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             TTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CccEEEEEEEeCCCCCCCCEEEEEEEcchh--CCchHHHHHHHHhCCCCeeeECeEccc
Confidence            888899999999999999999999998854  345678999999999999999999853

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4.9e-25  Score=185.46  Aligned_cols=136  Identities=35%  Similarity=0.590  Sum_probs=123.2

Q ss_pred             ccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccc
Q psy15955        231 CGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKI  310 (475)
Q Consensus       231 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l  310 (475)
                      +|+|.++++|.|..+.|.|.|++|+||+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++..++
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l   80 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL   80 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence            59999999999999999999999999999998899999999999877766777899999999999999999999998888


Q ss_pred             ccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccC
Q psy15955        311 RECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLK  368 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~  368 (475)
                      ....|.|+|||++.++++++||++.|++...  +++.++|.+++..|++.+..||.|.
T Consensus        81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~~~~~~~v~~Wh~L~  136 (137)
T d2cm5a1          81 AKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKKIERWHQLQ  136 (137)
T ss_dssp             GGCEEEEEEEECCSSSCCEEEEEEEEETTCC--HHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             cccEEEEEeeeCCCCCCCCEEEEEEeCcccc--CcchhhhhhHhhCCCCeeeEceecc
Confidence            8889999999999999999999999998653  3567899999999999999999985

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.4e-24  Score=186.83  Aligned_cols=142  Identities=45%  Similarity=0.835  Sum_probs=130.0

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWE  308 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~  308 (475)
                      +..|+|.++++|.+..+.|.|.|++|+||+..+..+.+||||++++.++++....++|++++++.||+|||+|.|.++..
T Consensus         9 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~   88 (157)
T d1uowa_           9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (157)
T ss_dssp             GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             eeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence            46799999999999999999999999999999999999999999998888777788999999999999999999999988


Q ss_pred             ccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCCCc
Q psy15955        309 KIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPDHE  372 (475)
Q Consensus       309 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s~~  372 (475)
                      ++....|.|+|||++.++++++||++.|++...  +.+..||.+++..|++.++.||+|.+...
T Consensus        89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~--~~~~~hW~~~~~~~~~~v~~Wh~L~~~~~  150 (157)
T d1uowa_          89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST--GAELRHWSDMLANPRRPIAQWHTLQVEEE  150 (157)
T ss_dssp             GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC--HHHHHHHHHHHHSTTCCEEEEEECBCHHH
T ss_pred             HcCccEEEEEEcccCCCCCCceeEEEEEecccC--ChhHHHHHHHHhCCCCceeEeEeCCCCcc
Confidence            888889999999999999999999999998543  35678999999999999999999986543

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.6e-24  Score=182.20  Aligned_cols=128  Identities=48%  Similarity=0.878  Sum_probs=115.9

Q ss_pred             CCCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccc
Q psy15955         97 EPSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFP  176 (475)
Q Consensus        97 ~~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~  176 (475)
                      .+.+..|+|++++.|+...++|.|+|++|++|+.++..+.+||||+|++.+.+...++|++++++.||+|||+|.|. ++
T Consensus        15 ~~~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~-i~   93 (143)
T d1rsya_          15 KEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK-VP   93 (143)
T ss_dssp             ---CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEEC-CC
T ss_pred             CchhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEE-EE
Confidence            34466899999999999999999999999999999999999999999998877778899999999999999999998 66


Q ss_pred             ccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       177 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      ..++....|.|+|||++..+++++||++.|+|.++..+.....|++|+.
T Consensus        94 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             eeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            6677778899999999999999999999999999988888889999964

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.3e-25  Score=186.98  Aligned_cols=142  Identities=42%  Similarity=0.744  Sum_probs=127.8

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      ....|+|+++++|.|..+.|.|.|++|+||+..+..+.+||||++++.+++....+++|++++++.||.|||+|.|.++.
T Consensus         3 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~   82 (145)
T d1dqva2           3 KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP   82 (145)
T ss_dssp             CSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCS
T ss_pred             cCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEeh
Confidence            34679999999999999999999999999999998999999999999876666567899999999999999999999988


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                      .++....|.|+|||++.++++++||++.|++.... ..+..+|.+|+..|++.++.||.|.+.
T Consensus        83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~l~~~p~~~i~~Wh~L~~~  144 (145)
T d1dqva2          83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEMLANPRKPVEHWHQLVEE  144 (145)
T ss_dssp             GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC-HHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC-chhhHHHHHHHhCCCCeeeEeEECCCC
Confidence            88888889999999999999999999999986543 345689999999999999999999764

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.2e-23  Score=175.01  Aligned_cols=125  Identities=43%  Similarity=0.786  Sum_probs=110.0

Q ss_pred             cccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       101 ~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      .+|+|.++++|+...+.|.|+|++|++|+.++..+.+||||+|++.+++.++++|++++++.||+|||+|.|. ++..++
T Consensus         3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~~   81 (130)
T d1dqva1           3 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS-VPLAEL   81 (130)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEE-CCGGGG
T ss_pred             CcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEE-EchHHc
Confidence            4799999999999999999999999999999999999999999998777778999999999999999999998 777777


Q ss_pred             ccceEEEEEEeeCCCCCCccccceeecccccc-C-CCCcceeeccCCC
Q psy15955        181 QSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD-L-SEKPTFWKALKPP  226 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~-~-~~~~~~~~~L~~~  226 (475)
                      ....|.|+|||++.++++++||++.|++.... . ......|++|.+.
T Consensus        82 ~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          82 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            77889999999999999999999999865432 2 2334579999753

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.5e-23  Score=176.00  Aligned_cols=126  Identities=35%  Similarity=0.706  Sum_probs=111.6

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc-----------eEEeeeecCCCCceeee
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH-----------RLETKIKRRTLNPRWNE  168 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-----------~~kT~v~~~~~nP~w~e  168 (475)
                      ...|+|++++.|+  .+.|.|+|++|++|+.++..|.+||||+|++.+....           ++||++++++.||.|||
T Consensus         4 p~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T d1rh8a_           4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence            4579999999996  6899999999999999999999999999999654322           24799999999999999


Q ss_pred             eEEeecccccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        169 TLYFEGFPIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       169 ~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      +|.|..++..++....|.|+|||+|.++++++||++.|+|.++..+.....||+|.+..
T Consensus        82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            99998667777777899999999999999999999999999998888888999998754

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=169.62  Aligned_cols=124  Identities=42%  Similarity=0.839  Sum_probs=109.0

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCC-CCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeeccccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSG-TSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQ  178 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~  178 (475)
                      ...|+|++++.|+...+.|.|+|++|++|+.++..+ .+||||+|++.+++...++|++++++.||+|||+|.|..++..
T Consensus         6 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   85 (138)
T d1ugka_           6 SGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT   85 (138)
T ss_dssp             CCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred             CCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHH
Confidence            447999999999999999999999999999988765 4799999999988878899999999999999999999756777


Q ss_pred             ccccceEEEEEEeeCCCCCCccccceeeccccccCCCC-cceeecc
Q psy15955        179 KLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK-PTFWKAL  223 (475)
Q Consensus       179 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-~~~~~~L  223 (475)
                      ++....|+|+|||.|.++++++||++.|+|+++...+. ...|..+
T Consensus        86 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             HcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            77778999999999999999999999999999975554 3355554

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-22  Score=167.40  Aligned_cols=121  Identities=30%  Similarity=0.642  Sum_probs=103.8

Q ss_pred             cEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeeccccccc
Q psy15955        103 GQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKL  180 (475)
Q Consensus       103 G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~  180 (475)
                      |+|++++.|+...+.|.|+|++|++|+..+..+.+||||+|++.++.  ..+++|++++++.||+|||+|.|..++..++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            89999999999999999999999999999989999999999997653  3468999999999999999999976677777


Q ss_pred             ccceEEEEEEeeCCCC--CCccccceeeccccccCCCCcceeeccC
Q psy15955        181 QSRVLHLHVFDYDRFS--RDDSIGEVFLPLCQVDLSEKPTFWKALK  224 (475)
Q Consensus       181 ~~~~L~~~V~d~d~~~--~~~~iG~~~i~l~~l~~~~~~~~~~~L~  224 (475)
                      ....|.|+|||.+..+  ++++||++.++|+++..... .+||+|+
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            7789999999999753  45699999999999976554 6899984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-22  Score=167.44  Aligned_cols=126  Identities=25%  Similarity=0.426  Sum_probs=111.5

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCC-ceEEeeeecCCCCceeeeeEEeeccc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKK-HRLETKIKRRTLNPRWNETLYFEGFP  176 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~kT~v~~~~~nP~w~e~f~f~~~~  176 (475)
                      .....++|++++.|+...+.|.|+|++|++|+.   .+.+||||+|++.+... ..++|++++++.||+|||.|.|. ++
T Consensus         8 s~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~-v~   83 (138)
T d1wfma_           8 SWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP-LA   83 (138)
T ss_dssp             CCSSCCEEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEE-CC
T ss_pred             CCCcCCEEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEE-ee
Confidence            345579999999999999999999999999954   46789999999987533 35789999999999999999999 77


Q ss_pred             ccccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCCC
Q psy15955        177 IQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA  227 (475)
Q Consensus       177 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~  227 (475)
                      ..++....|+|+|||++.++++++||++.|+|.++........|++|.+..
T Consensus        84 ~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_          84 EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             TTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             ehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            777777899999999999999999999999999998888889999998753

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=4.9e-22  Score=165.57  Aligned_cols=120  Identities=33%  Similarity=0.561  Sum_probs=104.1

Q ss_pred             cccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCC--CCceEEeeeecCCCCceeeeeEEeeccccc
Q psy15955        101 NVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPD--KKHRLETKIKRRTLNPRWNETLYFEGFPIQ  178 (475)
Q Consensus       101 ~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~  178 (475)
                      .+|+|.+++.|  ..+.|.|+|++|++|+.++..|.+||||+|++.+.  +..+++|++++++.||+|||+|.|. ++..
T Consensus         2 ~rG~i~l~~~~--~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~   78 (132)
T d1a25a_           2 RRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKES   78 (132)
T ss_dssp             TTCEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCSG
T ss_pred             cccEEEEEEEe--cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEE-eEcc
Confidence            57999999999  57899999999999999999999999999999765  3456899999999999999999998 4433


Q ss_pred             ccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        179 KLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       179 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      . ....|.|+|||+|.++++++||++.|+|.++..+ ....|++|.+
T Consensus        79 ~-~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          79 D-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             G-GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             c-cCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            3 3457999999999999999999999999998654 4578999975

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.9e-22  Score=166.46  Aligned_cols=110  Identities=39%  Similarity=0.684  Sum_probs=99.7

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      +.+.|+|.++++|.+..+.|.|.|++|+||+..+..+.+||||++++.+++.  .+++|++++++.||.|||+|.|.++.
T Consensus         1 ~~p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~   78 (130)
T d1dqva1           1 GAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQFSVPL   78 (130)
T ss_dssp             CCSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             CCCcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCC--ceEeceeEcCCCCeeeeeEEEEEEch
Confidence            3567999999999999999999999999999999999999999998865543  35789999999999999999999988


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCc
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGK  339 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~  339 (475)
                      .++....|.|+|||++.++++++||++.|++.
T Consensus        79 ~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~  110 (130)
T d1dqva1          79 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL  110 (130)
T ss_dssp             GGGSSCCCEEEEEECCSSSCCCEEEEEECCCT
T ss_pred             HHcCCCeEEEEEEEcCCCCCCceEEEEEECch
Confidence            88877889999999999999999999999753

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=4.7e-22  Score=168.08  Aligned_cols=124  Identities=36%  Similarity=0.626  Sum_probs=107.6

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      ....|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.+++.  .+++|++++++.||.|||+|.|.++.
T Consensus        17 ~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~--~~~kT~~~~~t~~P~wne~f~f~i~~   94 (143)
T d1rsya_          17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPY   94 (143)
T ss_dssp             -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEECCCH
T ss_pred             hhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCC--eeEEEEEeccccCcceeeeeEEEEEe
Confidence            3567999999999999999999999999999999999999999999976654  35789999999999999999999987


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccc
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDM  353 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~  353 (475)
                      .++....|.|+|||++.++++++||++.|+|.+...+....+|+++
T Consensus        95 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  140 (143)
T d1rsya_          95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL  140 (143)
T ss_dssp             HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEEC
T ss_pred             eccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeC
Confidence            7777788999999999999999999999998776544444555554

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=3.2e-21  Score=165.43  Aligned_cols=128  Identities=35%  Similarity=0.620  Sum_probs=109.8

Q ss_pred             CCCcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeecc
Q psy15955         98 PSENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGF  175 (475)
Q Consensus        98 ~~~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~  175 (475)
                      ..+..|+|++++.|++..+.|.|.|++|++|+..+..+.+||||+|++.+.+..  ..+|++++++.||+|||+|.|. +
T Consensus         7 ~~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~-v   85 (157)
T d1uowa_           7 ILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-V   85 (157)
T ss_dssp             GGGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-C
T ss_pred             CceeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEE-e
Confidence            345689999999999999999999999999999999999999999999766543  3589999999999999999998 7


Q ss_pred             cccccccceEEEEEEeeCCCCCCccccceeecccccc------------CCCCcceeeccCCC
Q psy15955        176 PIQKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVD------------LSEKPTFWKALKPP  226 (475)
Q Consensus       176 ~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~~~~L~~~  226 (475)
                      +..++....|.|+|||++.++++++||++.|++.+..            .+.....|+.|.+.
T Consensus        86 ~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_          86 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             CGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             cHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            7777777899999999999999999999999997631            22334578888653

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-21  Score=161.23  Aligned_cols=119  Identities=30%  Similarity=0.469  Sum_probs=100.7

Q ss_pred             CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        114 DNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       114 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      .-|.|.|+|++|++|+.++..|.+||||++++   +.++++|++++++.||+|||+|.|. +  ... ...|.|+|||++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~---~~~~~~T~~~~~t~nP~wne~f~f~-v--~~~-~~~L~i~V~d~~   76 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLEL---GNDRLQTHTVYKNLNPEWNKVFTFP-I--KDI-HDVLEVTVFDED   76 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE---TTEEEECCCCSSCSSCCCCEEEEEE-E--SCT-TCEEEEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEc---CCeEEEEEeeCCceeEEEEEEEEEE-E--ecc-CceeEEEEEEcc
Confidence            34679999999999999999999999999999   4567899999999999999999998 3  333 368999999999


Q ss_pred             CCCCCccccceeeccccccCCCCcceeeccCCCC--CCcccceeeeeeec
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPA--KDKCGELLTSLCYH  241 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~G~l~l~l~~~  241 (475)
                      ..+++++||++.++|.++..+.  ..|+.|....  +...|+|++++.+.
T Consensus        77 ~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          77 GDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             TTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCcCcceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            9999999999999999996554  4688775543  45679999988764

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.6e-21  Score=162.42  Aligned_cols=119  Identities=35%  Similarity=0.560  Sum_probs=97.5

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      +|+|++++.|.+..++|.|+|++|++|+..+..+.+||||+|++.+++..  +.+|++++++.||.|||+|.|. ++..+
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~~~~   79 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-IPCES   79 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-CCSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEE-ecHHH
Confidence            59999999999999999999999999999999999999999999765443  4589999999999999999998 77777


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeecc
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKAL  223 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L  223 (475)
                      +....|.|+|||+|.++++++||++.+++.+..  ....+|+.|
T Consensus        80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~--~~~~hW~~l  121 (138)
T d1w15a_          80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAEG--SGGGHWKEI  121 (138)
T ss_dssp             STTEEEEEEEEECCTTSCCEEEEEEEESTTCCS--HHHHHHHHH
T ss_pred             hCccEEEEEEEeCCCCCCCCEEEEEEEcchhCC--chHHHHHHH
Confidence            777889999999999999999999999997642  222345554

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=5.9e-21  Score=160.11  Aligned_cols=122  Identities=34%  Similarity=0.564  Sum_probs=106.0

Q ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccc
Q psy15955        102 VGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQK  179 (475)
Q Consensus       102 ~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~  179 (475)
                      +|+|++++.|.+..+.|.|.|++|++|+..+..+.+||||+|++.+++  ..++||++++++.||+|||+|.|. ++..+
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~   79 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSD   79 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CCGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEE-eEHHH
Confidence            599999999999999999999999999999988999999999997653  345789999999999999999999 77777


Q ss_pred             cccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCCC
Q psy15955        180 LQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPP  226 (475)
Q Consensus       180 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  226 (475)
                      +....|.|.|||++..+++++||++.+++.++.  .....|+.|.+.
T Consensus        80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~  124 (137)
T d2cm5a1          80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKN  124 (137)
T ss_dssp             GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHC
T ss_pred             ccccEEEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhhC
Confidence            777899999999999999999999999997653  233567776543

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.6e-21  Score=158.04  Aligned_cols=111  Identities=26%  Similarity=0.483  Sum_probs=95.7

Q ss_pred             cceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-eccccc
Q psy15955        232 GELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VPWEKI  310 (475)
Q Consensus       232 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~~~~l  310 (475)
                      |+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.++.....+++|++++++.||.|||+|.|. ++.+++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            8999999999999999999999999999999999999999999876555567899999999999999999996 777788


Q ss_pred             ccceEEEEEEeccCC--CCCeeeEEEEEcCcCCC
Q psy15955        311 RECSLNVMVMDFDNI--GRNELIGRILLAGKNGS  342 (475)
Q Consensus       311 ~~~~l~i~V~d~~~~--~~d~~lG~~~i~l~~~~  342 (475)
                      ....|.|+|||.+..  +++++||++.|++.+..
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~  114 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETAL  114 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcC
Confidence            788899999999976  34679999999886543

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=6.2e-21  Score=158.78  Aligned_cols=109  Identities=33%  Similarity=0.501  Sum_probs=96.0

Q ss_pred             cccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccc
Q psy15955        230 KCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEK  309 (475)
Q Consensus       230 ~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~  309 (475)
                      .+|+|.+.+.+.  .+.|.|.|++|+||+.++..|.+||||++++.+++....+++|++++++.||.|||+|.|.++..+
T Consensus         2 ~rG~i~l~~~~~--~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   79 (132)
T d1a25a_           2 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   79 (132)
T ss_dssp             TTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             cccEEEEEEEec--CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence            579999999985  678999999999999999999999999999987665556789999999999999999999987544


Q ss_pred             cccceEEEEEEeccCCCCCeeeEEEEEcCcCC
Q psy15955        310 IRECSLNVMVMDFDNIGRNELIGRILLAGKNG  341 (475)
Q Consensus       310 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~  341 (475)
                      . +..|.|+|||++.++++++||.+.|++.+.
T Consensus        80 ~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l  110 (132)
T d1a25a_          80 K-DRRLSVEIWDWDLTSRNDFMGSLSFGISEL  110 (132)
T ss_dssp             G-GCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred             c-CCEEeEEEEecCCCCCCcEeEEEEEeHHHc
Confidence            3 447999999999999999999999987543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=4.3e-21  Score=162.51  Aligned_cols=124  Identities=31%  Similarity=0.543  Sum_probs=107.1

Q ss_pred             CcccEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCc--eEEeeeecCCCCceeeeeEEeecccc
Q psy15955        100 ENVGQIHFSLEYDFDNSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKH--RLETKIKRRTLNPRWNETLYFEGFPI  177 (475)
Q Consensus       100 ~~~G~i~~~~~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--~~kT~v~~~~~nP~w~e~f~f~~~~~  177 (475)
                      ...|+|++++.|++..+.|.|.|++|++|+..+..+.+||||+|++.+++..  +.+|++++++.||+|||.|.|. ++.
T Consensus         4 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~-v~~   82 (145)
T d1dqva2           4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAP   82 (145)
T ss_dssp             SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CCS
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEE-Eeh
Confidence            4579999999999999999999999999999998899999999999765433  5789999999999999999998 777


Q ss_pred             cccccceEEEEEEeeCCCCCCccccceeeccccccCCCCcceeeccCC
Q psy15955        178 QKLQSRVLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKP  225 (475)
Q Consensus       178 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  225 (475)
                      .++....|.|.|||++..+++++||++.|++..+... ...+|++|..
T Consensus        83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~  129 (145)
T d1dqva2          83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEMLA  129 (145)
T ss_dssp             GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSSS
T ss_pred             hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHHh
Confidence            7777788999999999999999999999999876422 2356777654

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.8e-20  Score=155.85  Aligned_cols=124  Identities=19%  Similarity=0.256  Sum_probs=107.5

Q ss_pred             CCcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecc
Q psy15955        228 KDKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPW  307 (475)
Q Consensus       228 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~  307 (475)
                      .+..++|++++.|.+..+.|.|+|++|++|+.   .+.+||||++++.++.. ...++|++++++.||.|||+|.|.++.
T Consensus         9 ~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~-~~~~kT~v~~~~~~P~wne~f~f~v~~   84 (138)
T d1wfma_           9 WNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVLPLAE   84 (138)
T ss_dssp             CSSCCEEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEEECCT
T ss_pred             CCcCCEEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCC-ccceeeeEECCCCCceEeeeEEEEeee
Confidence            35679999999999999999999999999954   56789999999987644 346789999999999999999999988


Q ss_pred             cccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCccccccccccc
Q psy15955        308 EKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMIT  355 (475)
Q Consensus       308 ~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~  355 (475)
                      .++....|.|+|||++.++++++||++.|+|.+.......++|.+|..
T Consensus        85 ~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~  132 (138)
T d1wfma_          85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT  132 (138)
T ss_dssp             TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred             hhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence            888888999999999999999999999999987665556667777654

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.3e-21  Score=159.22  Aligned_cols=121  Identities=24%  Similarity=0.345  Sum_probs=103.1

Q ss_pred             CCEEEEEEEEeecCCCC---CCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEe
Q psy15955        115 NSTLILRVISAKELPAK---DMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFD  191 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d  191 (475)
                      .++|.|+|++|++|+..   |..|.+||||++.+.+...++++|+++.++.||.|||+|.|.   +.......|+|+|||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~---i~~~~~~~L~v~V~d   78 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI---LDPNQENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEE---ECTTSCCEEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeec---ccCcccCcEEEEEEE
Confidence            45799999999999975   446889999999997666677899999999999999999998   344456789999999


Q ss_pred             eCCCCCCccccceeeccccccCCCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        192 YDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       192 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      +|.. ++++||++.++|+++..+.....|++|.+.   ..|+|++.+++.|
T Consensus        79 ~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---~~g~i~~~l~~~~  125 (126)
T d1rlwa_          79 ANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV---TEMVLEMSLEVAS  125 (126)
T ss_dssp             CCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTT---EEEEEEEEEECCC
T ss_pred             CCCC-CCCeEEEEEEEHHHccCCCeEEEEEEccCC---CeEEEEEEEEEEe
Confidence            9875 579999999999999888888899999653   4688888888765

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.3e-20  Score=155.42  Aligned_cols=127  Identities=29%  Similarity=0.557  Sum_probs=105.9

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCC-CccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEe-ec
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDING-KSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFN-VP  306 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~-v~  306 (475)
                      ...|+|++++.|.+..+.|.|+|++|+||+..+..+ .+||||++++.+++.  .+++|++++++.||.|||+|.|. ++
T Consensus         6 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~   83 (138)
T d1ugka_           6 SGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGIP   83 (138)
T ss_dssp             CCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred             CCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCC--EeEeCeeEeCCCCCceeeEEEEeeeC
Confidence            456999999999999999999999999999988765 479999999976644  35789999999999999999996 77


Q ss_pred             ccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCC-CCcccccccccccCC
Q psy15955        307 WEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGS-GASETKHWQDMITKP  357 (475)
Q Consensus       307 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~~~w~~~~~~p  357 (475)
                      ..++....|.|+|||++.++++++||++.|+|.+.. .......|.++...|
T Consensus        84 ~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~~p  135 (138)
T d1ugka_          84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             STTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             HHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccCCC
Confidence            777878889999999999999999999999997753 223344555554433

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=8.5e-21  Score=160.19  Aligned_cols=114  Identities=33%  Similarity=0.565  Sum_probs=97.0

Q ss_pred             CcccceeeeeeecCCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceee---------eeeecccccCCCCCeecc
Q psy15955        229 DKCGELLTSLCYHPSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRI---------EKRKTQIFKCNLNPVFNE  299 (475)
Q Consensus       229 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~---------~~~~T~~~~~t~nP~w~e  299 (475)
                      ...|+|++++.|.  .+.|.|.|++|+||+..+..|.+||||++++.++....         .+++|++++++.||.|||
T Consensus         4 p~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T d1rh8a_           4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             CcceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence            3569999999996  57899999999999999999999999999985443221         246899999999999999


Q ss_pred             eEEEe-ecccccccceEEEEEEeccCCCCCeeeEEEEEcCcCCCCC
Q psy15955        300 SFSFN-VPWEKIRECSLNVMVMDFDNIGRNELIGRILLAGKNGSGA  344 (475)
Q Consensus       300 ~f~f~-v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~  344 (475)
                      +|.|. ++.+++....|.|+|||++.++++++||++.|+|.+....
T Consensus        82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~  127 (142)
T d1rh8a_          82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL  127 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGG
T ss_pred             EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCC
Confidence            99998 6666677778999999999999999999999998665443

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=2e-20  Score=156.60  Aligned_cols=121  Identities=28%  Similarity=0.479  Sum_probs=100.1

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeec-CCCCceeeeeEEeecccccccccceEEEEEEeeC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKR-RTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYD  193 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~-~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d  193 (475)
                      .|.|.|+|++|++|+..+..+.+||||++++   +....+|++++ ++.||+|||+|.|. +  .. ....|.|+|||+|
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~---~~~~~~t~~~~~~~~nP~Wne~f~f~-v--~~-~~~~L~v~V~d~d   81 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTC---RTQDQKSNVAEGMGTTPEWNETFIFT-V--SE-GTTELKAKIFDKD   81 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEES---SSCEEECCCCTTCCSSCEEEEEEEEE-E--ES-SCCEEEEEECCSS
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCccEEEEE---eeeeEEEEEEecCCCcEEEeeEEEEE-E--cC-ccceEEEEEEEec
Confidence            4579999999999999999999999999998   34567888776 58999999999998 3  33 2356999999999


Q ss_pred             CCCCCccccceeeccccccCC-CCcceeeccCCCCCCcccceeeeeeecCC
Q psy15955        194 RFSRDDSIGEVFLPLCQVDLS-EKPTFWKALKPPAKDKCGELLTSLCYHPS  243 (475)
Q Consensus       194 ~~~~~~~iG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~G~l~l~l~~~~~  243 (475)
                      ..++|++||.+.|+|.++... .....|+.+.. .++..|+|++++.|.|.
T Consensus        82 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~-~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          82 VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK-DEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             SCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE-TTEEEEEEEEEEEEEEC
T ss_pred             CCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC-CCccCEEEEEEEEEEeC
Confidence            999999999999999997543 33457888854 35678999999999864

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.78  E-value=2.5e-19  Score=149.51  Aligned_cols=118  Identities=20%  Similarity=0.329  Sum_probs=98.3

Q ss_pred             CCEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccc
Q psy15955        115 NSTLILRVISAKELPAKD-----------MSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSR  183 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~-----------~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~  183 (475)
                      .|.|.|+|++|++|++.+           ..+.+||||+|++  ++....+|+++.++.||+|||+|.|. ++  .  ..
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l--~~~~~~~T~~~~~t~~P~Wne~f~f~-v~--~--~~   77 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPAWHDEFVTD-VC--N--GR   77 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTEEEEECCCCSSCSSCEEEEEEEEE-EE--E--EC
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe--CCCcCcEeeEEcCCCCccCccEEEEE-Ee--c--CC
Confidence            467999999999999753           3567899999999  34445689999999999999999998 33  2  35


Q ss_pred             eEEEEEEeeCCCCCCccccceeeccccccCCCC--cceeeccCCCCCCcccceeeeeeecCCc
Q psy15955        184 VLHLHVFDYDRFSRDDSIGEVFLPLCQVDLSEK--PTFWKALKPPAKDKCGELLTSLCYHPSN  244 (475)
Q Consensus       184 ~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~--~~~~~~L~~~~~~~~G~l~l~l~~~~~~  244 (475)
                      .|.|+|||++.+++|++||.+.|+|+++.....  ...|++|.+     .|+|++.+.+.++.
T Consensus        78 ~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-----~G~v~l~v~~~~~~  135 (136)
T d1gmia_          78 KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-----EGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-----SCEEEEEEEEEEEE
T ss_pred             ceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-----CcEEEEEEEEEeCC
Confidence            899999999999999999999999999965543  458999964     59999999887654

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.1e-18  Score=144.63  Aligned_cols=119  Identities=24%  Similarity=0.372  Sum_probs=89.9

Q ss_pred             CEEEEEEEEeecCCCC--CCCCCCCcEEEEEEeCC--CCceEEeeeecC-CCCceeeeeEEeecccccccccceEEEEEE
Q psy15955        116 STLILRVISAKELPAK--DMSGTSDPYVKVALLPD--KKHRLETKIKRR-TLNPRWNETLYFEGFPIQKLQSRVLHLHVF  190 (475)
Q Consensus       116 ~~L~v~v~~a~~L~~~--~~~~~~dpyv~v~l~~~--~~~~~kT~v~~~-~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~  190 (475)
                      ..|.|+|++|++|+..  +..+.+||||+|++.+.  +.++++|+++++ ++||+|||+|.|. +.  ......|+|+||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~-~~--~~~~~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VT--VPDLALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEE-ES--CGGGCEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEE-EE--cchhceEEEEEE
Confidence            4799999999999854  45678999999999643  346778997765 5799999999998 33  223468999999


Q ss_pred             eeCCCCCCccccceeeccccccCCCCcceeeccCCCCCCc--ccceeeeeee
Q psy15955        191 DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKDK--CGELLTSLCY  240 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~--~G~l~l~l~~  240 (475)
                      |+|..+++++||++.+||+++..+   ..|++|....+..  .+.|.+.+.+
T Consensus        81 D~d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          81 DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             ECCTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             EecCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            999999999999999999999643   4588887665542  3455555543

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=143.98  Aligned_cols=118  Identities=24%  Similarity=0.260  Sum_probs=92.0

Q ss_pred             CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCC
Q psy15955        115 NSTLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDR  194 (475)
Q Consensus       115 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~  194 (475)
                      .++|.|+|++|++|+..+..+.+||||+|.+   +.+.++|++++++.||+|||.|.|. +.  .  ...|.|+|||+|.
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~-~~--~--~~~l~~~V~d~d~   76 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTV---DGQSKKTEKCNNTNSPKWKQPLTVI-VT--P--VSKLHFRVWSHQT   76 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEE---TTEEEECCCCSSCSSCEEEEEEEEE-EC--T--TCEEEEEEEECCS
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEE---CCeEEeeEEEEecccEEEcceEEEE-EE--e--cceeEEEEEEccC
Confidence            4679999999999999888889999999999   4567899999999999999999998 32  2  3579999999999


Q ss_pred             CCCCccccceeeccccccCC---CCc--ceeeccCCCC--CCcccceeeeeee
Q psy15955        195 FSRDDSIGEVFLPLCQVDLS---EKP--TFWKALKPPA--KDKCGELLTSLCY  240 (475)
Q Consensus       195 ~~~~~~iG~~~i~l~~l~~~---~~~--~~~~~L~~~~--~~~~G~l~l~l~~  240 (475)
                      +++|++||++.++|.++...   ...  ..|+.+....  ....|+|.+.+.+
T Consensus        77 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1          77 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             CCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            99999999999999987432   112  2344443322  2456888877765

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.3e-17  Score=134.10  Aligned_cols=114  Identities=25%  Similarity=0.343  Sum_probs=83.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeCCCCceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCCC
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLPDKKHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRFS  196 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~~  196 (475)
                      .|.|+|++|++|.+++   ..||||++.+   ++.+.+|.+++ +.||+|||+|.|.   +..+ ...|.|+|||++.. 
T Consensus         3 ~L~V~v~~a~~l~~~~---~~dpYv~l~~---~~~k~~T~~~k-~~nP~Wne~f~f~---v~~~-~~~L~v~V~d~~~~-   70 (128)
T d2cjta1           3 LLCVGVKKAKFDGAQE---KFNTYVTLKV---QNVKSTTIAVR-GSQPSWEQDFMFE---INRL-DLGLTVEVWNKGLI-   70 (128)
T ss_dssp             EEEEEEEEEECSSCGG---GCEEEEEEEE---TTEEEECCCEE-SSSCEEEEEEEEE---ECCC-SSEEEEEEEECCSS-
T ss_pred             EEEEEEEEEECCCCCC---CcCeEEEEEe---CCEEEEEEEec-CCCCeEEEEEEEe---eccc-cceEEEEEEeCCCc-
Confidence            5999999999999876   5799999999   45678888886 4599999999998   3343 35799999999876 


Q ss_pred             CCccccceeeccccccCCC--CcceeeccCCCCCCcccceeeeeeecC
Q psy15955        197 RDDSIGEVFLPLCQVDLSE--KPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       197 ~~~~iG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                      +|++||++.|||+++..+.  ....|++|........|++.-+....+
T Consensus        71 ~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~  118 (128)
T d2cjta1          71 WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTF  118 (128)
T ss_dssp             CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCC
T ss_pred             CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCC
Confidence            5899999999999996443  346899997765555555555544443

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.7e-17  Score=133.26  Aligned_cols=92  Identities=30%  Similarity=0.456  Sum_probs=80.3

Q ss_pred             CceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEec
Q psy15955        243 SNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDF  322 (475)
Q Consensus       243 ~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~  322 (475)
                      .-|.|.|+|++|++|+..+..|++||||++++  ++   .+++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~--~~---~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~L~i~V~d~   75 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLEL--GN---DRLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLEVTVFDE   75 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE--TT---EEEECCCCSSCSSCCCCEEEEEEESCT---TCEEEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEc--CC---eEEEEEeeCCceeEEEEEEEEEEEecc---CceeEEEEEEc
Confidence            45899999999999999999999999999987  22   356899999999999999999998643   24799999999


Q ss_pred             cCCCCCeeeEEEEEcCcCCC
Q psy15955        323 DNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       323 ~~~~~d~~lG~~~i~l~~~~  342 (475)
                      +.++++++||++.|++.+..
T Consensus        76 ~~~~~d~~lG~~~i~l~~l~   95 (126)
T d2ep6a1          76 DGDKPPDFLGKVAIPLLSIR   95 (126)
T ss_dssp             ETTEEEEECCBCEEEGGGCC
T ss_pred             cCCcCcceEEEEEEEHHHCC
Confidence            99999999999999886554

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=4e-16  Score=128.90  Aligned_cols=96  Identities=23%  Similarity=0.377  Sum_probs=76.0

Q ss_pred             eeEEEEEEeeccCccc--ccCCCccceEEEEEEeCceeeeeeecccccCC-CCCeecceEEEeecccccccceEEEEEEe
Q psy15955        245 SVLTITLLKARNLKAK--DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCN-LNPVFNESFSFNVPWEKIRECSLNVMVMD  321 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~--~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~v~~~~l~~~~l~i~V~d  321 (475)
                      ..|.|.|++|++|+..  +.++++||||++++.+......+++|++++++ .||.|||+|.|.+...+.  ..|.|+|||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~--~~L~~~V~D   81 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVED   81 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGG--CEEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchh--ceEEEEEEE
Confidence            4799999999999754  46778999999998754433456788887654 799999999998875553  469999999


Q ss_pred             ccCCCCCeeeEEEEEcCcCCC
Q psy15955        322 FDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       322 ~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      ++..++|++||++.|++....
T Consensus        82 ~d~~~~d~~iG~~~i~l~~l~  102 (131)
T d1qasa2          82 YDSSSKNDFIGQSTIPWNSLK  102 (131)
T ss_dssp             CCTTTCCEEEEEEEEEGGGBC
T ss_pred             ecCCCCCcEEEEEEEEEeccC
Confidence            999999999999999986543

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.7e-16  Score=128.34  Aligned_cols=108  Identities=21%  Similarity=0.366  Sum_probs=84.1

Q ss_pred             ceeEEEEEEeeccCccc---ccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEE
Q psy15955        244 NSVLTITLLKARNLKAK---DINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      .+.|+|+|++|+||+..   |..|++||||++++.+.  ...+++|++++++.||.|||+|.|.+...  ....|.|+||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~f~i~~~--~~~~L~v~V~   77 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT--PDSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS--TTCCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCc--ccceeEeeecCCCccceeceeeeecccCc--ccCcEEEEEE
Confidence            57899999999999874   45688999999987432  22457899999999999999999998633  3457999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                      |++.. +|++||++.+++.++..              +.....|++|...
T Consensus        78 d~d~~-~d~~lG~~~i~L~~l~~--------------~~~~~~~~~L~~~  112 (126)
T d1rlwa_          78 DANYV-MDETLGTATFTVSSMKV--------------GEKKEVPFIFNQV  112 (126)
T ss_dssp             ECCSS-CCEEEEEEEEEGGGSCT--------------TCEEEEEEEETTT
T ss_pred             ECCCC-CCCeEEEEEEEHHHccC--------------CCeEEEEEEccCC
Confidence            99865 58999999998855433              3345567777543

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.63  E-value=9.2e-16  Score=127.48  Aligned_cols=107  Identities=18%  Similarity=0.331  Sum_probs=85.2

Q ss_pred             ceeEEEEEEeeccCcccc-----------cCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeeccccccc
Q psy15955        244 NSVLTITLLKARNLKAKD-----------INGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRE  312 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~-----------~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~  312 (475)
                      .|.|.|.|++|++|++.+           ..+.+||||++++  ++.  ...+|++++++.||.|||+|.|.++..    
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l--~~~--~~~~T~~~~~t~~P~Wne~f~f~v~~~----   76 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDS--RIGQTATKQKTNSPAWHDEFVTDVCNG----   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE--TTE--EEEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe--CCC--cCcEeeEEcCCCCccCccEEEEEEecC----
Confidence            689999999999998754           3567899999987  332  345799999999999999999998643    


Q ss_pred             ceEEEEEEeccCCCCCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        313 CSLNVMVMDFDNIGRNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       313 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                      ..|.|+|||++.+++|++||.+.|++.            ++..........|++|.+.
T Consensus        77 ~~l~i~V~d~~~~~~d~~iG~~~i~l~------------~l~~~~~~~~~~w~~L~p~  122 (136)
T d1gmia_          77 RKIELAVFHDAPIGYDDFVANCTIQFE------------ELLQNGSRHFEDWIDLEPE  122 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHH------------HHTSTTCSEEEEEEECBSS
T ss_pred             CceEEEEEEecCCCCceeEEEEEEEHH------------HhhhcCCcceeEEEeCCCC
Confidence            479999999999999999999999764            3333444455678877653

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=1.2e-15  Score=126.88  Aligned_cols=91  Identities=22%  Similarity=0.389  Sum_probs=76.6

Q ss_pred             CCceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeeccccc-CCCCCeecceEEEeecccccccceEEEEEE
Q psy15955        242 PSNSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFK-CNLNPVFNESFSFNVPWEKIRECSLNVMVM  320 (475)
Q Consensus       242 ~~~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~  320 (475)
                      ...|.|.|+|++|++|+..+..+++||||++++.  +   ..++|++++ ++.||.|||+|.|.+....   ..|.|+||
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~--~---~~~~t~~~~~~~~nP~Wne~f~f~v~~~~---~~L~v~V~   78 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR--T---QDQKSNVAEGMGTTPEWNETFIFTVSEGT---TELKAKIF   78 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS--S---CEEECCCCTTCCSSCEEEEEEEEEEESSC---CEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe--e---eeEEEEEEecCCCcEEEeeEEEEEEcCcc---ceEEEEEE
Confidence            3458999999999999999999999999999762  2   234677766 6899999999999987432   36999999


Q ss_pred             eccCCCCCeeeEEEEEcCcC
Q psy15955        321 DFDNIGRNELIGRILLAGKN  340 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~  340 (475)
                      |++.+++|++||++.|++.+
T Consensus        79 d~d~~~~d~~iG~~~i~L~~   98 (136)
T d1wfja_          79 DKDVGTEDDAVGEATIPLEP   98 (136)
T ss_dssp             CSSSCTTTCCSEEEEEESHH
T ss_pred             EecCCCCCCEEEEEEEEhHH
Confidence            99999999999999998754

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.1e-15  Score=124.71  Aligned_cols=88  Identities=22%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             ceeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEecc
Q psy15955        244 NSVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFD  323 (475)
Q Consensus       244 ~~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~  323 (475)
                      .+.|.|+|++|++++..+..+++||||++.+  ++   .+++|++++++.||.|||.|.|.+...    ..|.|+|||++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~--~~---~~~kT~v~~~t~nP~wne~f~f~~~~~----~~l~~~V~d~d   75 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTV--DG---QSKKTEKCNNTNSPKWKQPLTVIVTPV----SKLHFRVWSHQ   75 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEE--TT---EEEECCCCSSCSSCEEEEEEEEEECTT----CEEEEEEEECC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEE--CC---eEEeeEEEEecccEEEcceEEEEEEec----ceeEEEEEEcc
Confidence            4689999999999999888889999999976  33   246899999999999999999998743    37999999999


Q ss_pred             CCCCCeeeEEEEEcCcC
Q psy15955        324 NIGRNELIGRILLAGKN  340 (475)
Q Consensus       324 ~~~~d~~lG~~~i~l~~  340 (475)
                      .+++|++||++.++|.+
T Consensus        76 ~~~~d~~iG~~~i~L~~   92 (133)
T d2nq3a1          76 TLKSDVLLGTAALDIYE   92 (133)
T ss_dssp             SSSCCEEEEEEEEEHHH
T ss_pred             CCCCCceEEEEEEEHHH
Confidence            99999999999998754

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.5e-15  Score=118.69  Aligned_cols=100  Identities=26%  Similarity=0.436  Sum_probs=73.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEeC--C-CCceEEeee--ecCCCCceeeee-EEeecccccccccceEEEEEE
Q psy15955        117 TLILRVISAKELPAKDMSGTSDPYVKVALLP--D-KKHRLETKI--KRRTLNPRWNET-LYFEGFPIQKLQSRVLHLHVF  190 (475)
Q Consensus       117 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~--~-~~~~~kT~v--~~~~~nP~w~e~-f~f~~~~~~~~~~~~L~~~V~  190 (475)
                      +|.|+|++|++|+...    .||||+|++.+  . ...+.+|++  ..|++||+|||+ |.|.  .........|+|.||
T Consensus         2 tl~V~Visaq~L~~~~----~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~--~~~~~~l~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFE--KILMPELASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSSC----CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEE--EESSGGGCEEEEEEE
T ss_pred             EEEEEEEEeeCCCCCC----CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEE--ecCCCcccEEEEEEE
Confidence            6899999999998654    79999999964  2 233445553  478999999976 4443  233334468999999


Q ss_pred             eeCCCCCCccccceeeccccccCCCCcceeeccCCCCCC
Q psy15955        191 DYDRFSRDDSIGEVFLPLCQVDLSEKPTFWKALKPPAKD  229 (475)
Q Consensus       191 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~  229 (475)
                      |+|    +++||++++||+.+..|   -.+.+|....+.
T Consensus        76 D~d----~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~  107 (122)
T d2zkmx2          76 EEG----NKFLGHRIIPINALNSG---YHHLCLHSESNM  107 (122)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCE---EEEEEEECTTCC
T ss_pred             CCC----CCEEEEEEEEcccCcCC---ceEEEccCCCcC
Confidence            976    68999999999999654   356777665444

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=5.1e-15  Score=120.30  Aligned_cols=111  Identities=20%  Similarity=0.316  Sum_probs=82.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEeCCC--CceEEeeeecCCCCceeeeeEEeecccccccccceEEEEEEeeCCC
Q psy15955        118 LILRVISAKELPAKDMSGTSDPYVKVALLPDK--KHRLETKIKRRTLNPRWNETLYFEGFPIQKLQSRVLHLHVFDYDRF  195 (475)
Q Consensus       118 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~kT~v~~~~~nP~w~e~f~f~~~~~~~~~~~~L~~~V~d~d~~  195 (475)
                      |+|.|-...--+.....+.+||||+|++.+..  ....+|+++++|+||+|||+|.|.   +.+  ...|.|.|||+|  
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~---v~~--~~~l~i~V~d~d--   77 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH---IYE--GRVIQIVLMRAA--   77 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEE---CCT--TCEEEEEEEEET--
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEE---Ecc--ccEEEEEEEEcc--
Confidence            44443333222234456889999999995431  223578999999999999999998   333  358999999987  


Q ss_pred             CCCccccceeecccccc-----CCCCcceeeccCCCCCCcccceeeeeeecC
Q psy15955        196 SRDDSIGEVFLPLCQVD-----LSEKPTFWKALKPPAKDKCGELLTSLCYHP  242 (475)
Q Consensus       196 ~~~~~iG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~~~G~l~l~l~~~~  242 (475)
                        ++++|.+.+++.++.     .+.....|++|.     +.|+|++.+.|..
T Consensus        78 --d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-----~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 --EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMCVQYFL  122 (123)
T ss_dssp             --TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEEE
T ss_pred             --ccccCccEEehhheeeccccCCCcccEEEeCC-----CCEEEEEEEEEec
Confidence              679999999988874     344557899996     4699999998863

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=3e-14  Score=116.21  Aligned_cols=84  Identities=21%  Similarity=0.318  Sum_probs=68.9

Q ss_pred             eeEEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccC
Q psy15955        245 SVLTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDN  324 (475)
Q Consensus       245 ~~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~  324 (475)
                      +.|.|+|.+|++|.+.+   ++||||.+.+  ++   .+++|.+++ +.||.|||+|.|.+...   +..|.|+|||++.
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~--~~---~k~~T~~~k-~~nP~Wne~f~f~v~~~---~~~L~v~V~d~~~   69 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKV--QN---VKSTTIAVR-GSQPSWEQDFMFEINRL---DLGLTVEVWNKGL   69 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEE--TT---EEEECCCEE-SSSCEEEEEEEEEECCC---SSEEEEEEEECCS
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEe--CC---EEEEEEEec-CCCCeEEEEEEEeeccc---cceEEEEEEeCCC
Confidence            47899999999999876   5799999977  22   356787775 56999999999998643   2469999999987


Q ss_pred             CCCCeeeEEEEEcCcCC
Q psy15955        325 IGRNELIGRILLAGKNG  341 (475)
Q Consensus       325 ~~~d~~lG~~~i~l~~~  341 (475)
                      . +|++||++.|++.+.
T Consensus        70 ~-~d~~lG~~~I~L~~l   85 (128)
T d2cjta1          70 I-WDTMVGTVWIPLRTI   85 (128)
T ss_dssp             S-CEEEEEEEEEEGGGS
T ss_pred             c-CCcceEEEEEEehhh
Confidence            6 589999999988654

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.7e-12  Score=105.10  Aligned_cols=105  Identities=11%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             EEEEEEeeccCcccccCCCccceEEEEEEeCceeeeeeecccccCCCCCeecceEEEeecccccccceEEEEEEeccCCC
Q psy15955        247 LTITLLKARNLKAKDINGKSDPYVKVWLQFGEKRIEKRKTQIFKCNLNPVFNESFSFNVPWEKIRECSLNVMVMDFDNIG  326 (475)
Q Consensus       247 L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~l~~~~l~i~V~d~~~~~  326 (475)
                      +.|.+..+..++  ...+.+||||+|++.........++|.++++|+||+|||+|.|.+..    ...|.|.|||++   
T Consensus         7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~----~~~l~i~V~d~d---   77 (123)
T d1bdya_           7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAA---   77 (123)
T ss_dssp             EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT----TCEEEEEEEEET---
T ss_pred             EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc----ccEEEEEEEEcc---
Confidence            344444444443  45788999999999643322234578899999999999999999863    246999999976   


Q ss_pred             CCeeeEEEEEcCcCCCCCcccccccccccCCCcceeeeeccCCC
Q psy15955        327 RNELIGRILLAGKNGSGASETKHWQDMITKPRQTIVQWHRLKPD  370 (475)
Q Consensus       327 ~d~~lG~~~i~l~~~~~~~~~~~w~~~~~~p~~~~s~w~~L~~s  370 (475)
                       ++++|.+.+++....         ......+.....|..|.+.
T Consensus        78 -d~~~g~~~i~l~~l~---------~~~~~~~~~~~~W~~L~~~  111 (123)
T d1bdya_          78 -EDPMSEVTVGVSVLA---------ERCKKNNGKAEFWLDLQPQ  111 (123)
T ss_dssp             -TEEEEEEEEEHHHHH---------HHHHTTTTEEEEEEECBSS
T ss_pred             -ccccCccEEehhhee---------eccccCCCcccEEEeCCCC
Confidence             789999999764321         1111234456678777654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5e-12  Score=102.04  Aligned_cols=87  Identities=28%  Similarity=0.392  Sum_probs=63.0

Q ss_pred             eEEEEEEeeccCcccccCCCccceEEEEEEe---CceeeeeeecccccCCCCCeecce-EEEe-ecccccccceEEEEEE
Q psy15955        246 VLTITLLKARNLKAKDINGKSDPYVKVWLQF---GEKRIEKRKTQIFKCNLNPVFNES-FSFN-VPWEKIRECSLNVMVM  320 (475)
Q Consensus       246 ~L~v~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~~~~~T~~~~~t~nP~w~e~-f~f~-v~~~~l~~~~l~i~V~  320 (475)
                      .|.|.|+.|++|+..    ++||||+|++..   +.....+.++.+..++.||.|||. |.|. +...++  ..|.|.||
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~   75 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVM   75 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEEE
Confidence            589999999999764    479999999964   222222233334467899999976 4443 444444  47999999


Q ss_pred             eccCCCCCeeeEEEEEcCcCCC
Q psy15955        321 DFDNIGRNELIGRILLAGKNGS  342 (475)
Q Consensus       321 d~~~~~~d~~lG~~~i~l~~~~  342 (475)
                      |++    +++||++.+++..+.
T Consensus        76 D~d----~~~lG~~~ipl~~l~   93 (122)
T d2zkmx2          76 EEG----NKFLGHRIIPINALN   93 (122)
T ss_dssp             ETT----TEEEEEEEEEGGGBC
T ss_pred             CCC----CCEEEEEEEEcccCc
Confidence            975    799999999986543

>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Simian immunodeficiency virus [TaxId: 11723]

Probab=99.28  E-value=7.4e-13  Score=112.84  Aligned_cols=91  Identities=20%  Similarity=0.209  Sum_probs=72.6

Q ss_pred             CCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc--ccchHHHHHHHHHHhcCccCC
Q psy15955        357 PRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN--WNNVDEELLNFSQSYNSTPHT  434 (475)
Q Consensus       357 p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~--~~~~~~~l~~~l~~y~~~~~~  434 (475)
                      +....++.+..+.+..|.++|+..|+.+..+++++|++||.+||++++++..+++..  ...|+..|+.+++.||.+||.
T Consensus        56 ~~~I~sDnG~~F~~~~~~~~~~~~gI~~~~~~p~~p~~Ng~vEr~n~~lk~~l~~~~~~~~~~~~~l~~a~~~~N~~~h~  135 (159)
T d1c6va_          56 ITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNHKRRG  135 (159)
T ss_dssp             CCEEECCCCSSTTSSHHHHHHHHHTCEEECC-----------CCTTTHHHHHHHTTTTSSSCHHHHHHHHHHHHHSCCCS
T ss_pred             CceeEecCCCccccchhhhhhhhcCcceeecccccccchhHHHHHhhHHHHHHHHHHcchhhHHHHHHHHHHHHhCCcCC
Confidence            345668899999999999999999999999999999999999999999999998764  388999999999999999999


Q ss_pred             CCC-CChhhhhcCC
Q psy15955        435 TLG-VSPAELHLGR  447 (475)
Q Consensus       435 ~~~-~sP~~l~~gr  447 (475)
                      ++| .||+|++||.
T Consensus       136 ~l~~~TP~E~~~~~  149 (159)
T d1c6va_         136 GIGDMTPAERLINM  149 (159)
T ss_dssp             SSSCCCHHHHHHHH
T ss_pred             CCCCcChHHHHHCC
Confidence            985 8999999985

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=99.20  E-value=2.2e-12  Score=109.11  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             cCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhccc--cchHHHHHHHHHHhcCcc
Q psy15955        355 TKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCNW--NNVDEELLNFSQSYNSTP  432 (475)
Q Consensus       355 ~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~~--~~~~~~l~~~l~~y~~~~  432 (475)
                      ..|....++.+.-+.+..|+++|+..|+.+..+.+|+||+||.+||++++++.+|++...  ..|.+.|+.+++.||.+|
T Consensus        53 ~~p~~I~sDnG~eF~s~~~~~~~~~~gi~~~~s~p~~Pq~nG~vEr~~r~l~~~lr~~~~~~~~~~~~l~~a~~~~N~~~  132 (154)
T d1exqa_          53 WPVKTIHTDNGSNFTGATVRAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKR  132 (154)
T ss_dssp             SCCCEEECCCCGGGTSHHHHHHHHHHTCEECSCCCC-------CCSSHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             cCCCEEEEcCCccccchhhhhhhhhcccccccccCcccccccHHHHHHHHHHHhhhhhcccccCHHHHHHHHHHHHhcCC
Confidence            357788899999999999999999999999999999999999999999999999987743  779999999999999999


Q ss_pred             CCCC-CCChhhhhcCCc
Q psy15955        433 HTTL-GVSPAELHLGRK  448 (475)
Q Consensus       433 ~~~~-~~sP~~l~~gr~  448 (475)
                      |..+ |.||+|.+++.-
T Consensus       133 ~~~l~G~tP~er~~~~~  149 (154)
T d1exqa_         133 KGGIGGYSAGERIVDII  149 (154)
T ss_dssp             SSSSSCCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhhh
Confidence            9877 899999998754

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=98.38  E-value=2.3e-08  Score=83.00  Aligned_cols=78  Identities=13%  Similarity=0.114  Sum_probs=65.6

Q ss_pred             cccCCCcceeeeeccCCCCcccceeecccceecccCCCCCCCCCchhhhhHHHHHHhhhcc----------ccchHHHHH
Q psy15955        353 MITKPRQTIVQWHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGAAENMVGVVKRFLRKCN----------WNNVDEELL  422 (475)
Q Consensus       353 ~~~~p~~~~s~w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~~er~~~~lk~~l~~~~----------~~~~~~~l~  422 (475)
                      ..+.|....++.++.+.+..|+++|...||.+..+.+++|++||.+||++++++..+++..          ...|.+.|.
T Consensus        60 ~~g~p~~i~sDnG~~F~s~~~~~~~~~~gI~~~~~~p~~P~~ng~vER~~~tlk~~~~~~~~~~~~~~~~~~~~w~~~l~  139 (147)
T d1cxqa_          60 VLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLA  139 (147)
T ss_dssp             HHCCCSEEECCSCHHHHSHHHHHHHHHHTCEEECCCCC----CHHHHHHHHHHHHHHHHHHHHTTCSSSCCHHHHHHHHH
T ss_pred             HhCCCeEEEecccccccchhhhhhhhheeEEeeeeccchhhcCceeehhhHHHHHHHHHHHhcccchhhCCcccHHHHHH
Confidence            3467888889999999999999999999999999999999999999999999999887652          145999999


Q ss_pred             HHHHHhcC
Q psy15955        423 NFSQSYNS  430 (475)
Q Consensus       423 ~~l~~y~~  430 (475)
                      .+++.||+
T Consensus       140 ~a~~~~N~  147 (147)
T d1cxqa_         140 KAMYALNH  147 (147)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHcC
Confidence            99999986

>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Mammalian PLC
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.3e-08  Score=93.02  Aligned_cols=69  Identities=14%  Similarity=0.096  Sum_probs=53.3

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQS   83 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~   83 (475)
                      .-+++++++.||||.|+|++|+|++|...|..++...+..=+..   +....++|..||+||||+||++|+.
T Consensus       277 li~~Nk~~L~RVYP~g~RvdSSNynP~~~W~~GcQ~VALN~Qt~D~~m~ln~g~F~~NG~cGYVLKP~~LR~  348 (349)
T d2zkmx4         277 FVDYNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKHEFMRR  348 (349)
T ss_dssp             HHHHHHHSEEEEECCTTCTTCCCCCSHHHHHTTCSEECBCTTCCSHHHHHHHHHTTTGGGCSEEECCGGGTC
T ss_pred             HHHHhhccEEEECcCCCcCCCCCCCcHHHHhcCccEeEecccCCCHHHHHHHHHHHhcCCcCeEECCHHHCC
Confidence            45899999999999999999999999766544444444433332   2234478999999999999999985

>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Mammalian PLC
domain: Phospholipase C isozyme D1 (PLC-D1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=2e-07  Score=87.57  Aligned_cols=73  Identities=15%  Similarity=0.064  Sum_probs=55.0

Q ss_pred             HHHHHhhhhhhhcccCccccCCCCCCCCCCCCCCCCCcccCCCC---CCcccccccccCCCCCCCCcccccccccc
Q psy15955         15 LSRFLSQSVAQLETAGTTVDSNNSKSPVPGSSHAMEGAIASSSS---STPLHNKAVANVKAGEHPSSAFMQSRSVS   87 (475)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~n~~~g~~~~~~~l~~~~~s   87 (475)
                      .-.++++++.||||.|++++|+|++|...+..++...+..=+..   +....++|..||+||||+||++|+.....
T Consensus       241 l~~~nk~~l~rvyP~g~ridSsNy~P~~~w~~G~Q~valN~Qt~D~~m~ln~~~F~~NG~~GyVLKP~~Lr~~~~~  316 (327)
T d1qasa3         241 FVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNTT  316 (327)
T ss_dssp             HHHHHHHSCEEEECCTTCTTCCCCCSHHHHTTTCCEEEECTTCCSHHHHHHHHHTTSGGGCSEEECCGGGSCTTCC
T ss_pred             HHHHHHhheEEEecCCCCCCCCCCChHHHHhcCCcEEEEeccCCChhHHHHHHHHHhcCCcceEECCHHHcCCCCC
Confidence            34889999999999999999999998765444444444333322   22344789999999999999999976544

>d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage mu [TaxId: 10677]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: mu transposase, core domain
domain: mu transposase, core domain
species: Bacteriophage mu [TaxId: 10677]

Probab=93.64  E-value=0.011  Score=50.99  Aligned_cols=81  Identities=12%  Similarity=0.074  Sum_probs=57.1

Q ss_pred             eeccCCCCcccceeecccceecccCCCCCCCCCc---hhhhhHHHHHH--hhhc------------------------cc
Q psy15955        364 WHRLKPDHEMQTFLQSVGVSHIRIPTYHPASNGA---AENMVGVVKRF--LRKC------------------------NW  414 (475)
Q Consensus       364 w~~L~~s~~f~~~~~~~g~~~~~~~~~~pqsnG~---~er~~~~lk~~--l~~~------------------------~~  414 (475)
                      |..-..+..+..+|..+|+.+....+++|+.||+   +||+.+++...  ..+.                        .-
T Consensus        97 ~~~~~~~~~~~~~~~~lGi~~~~~~~~~p~~~g~~~~iER~F~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~  176 (223)
T d1bcoa2          97 YRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDRAVDA  176 (223)
T ss_dssp             TBSCBCCCCHHHHHHHHTCEEECSSSCTTCCCCCSSCSSGGGSGGGGGGTTTTCGGGTTTBCCC--------CTTTCEEH
T ss_pred             chhhhhhHHHHHHHHHhCceeeecCCCCcccCccceehhhHHHHHhHHhhhhhhhcccCcccCCccccccccccccCCCH
Confidence            3334456677889999999999999999999996   89998886521  1111                        01


Q ss_pred             cchHHHHHHHHHHhcCccCCCC----C-CChhhhh
Q psy15955        415 NNVDEELLNFSQSYNSTPHTTL----G-VSPAELH  444 (475)
Q Consensus       415 ~~~~~~l~~~l~~y~~~~~~~~----~-~sP~~l~  444 (475)
                      ....+.|..++..||++||..+    | .||.|.+
T Consensus       177 ~e~~~~l~~~I~~yN~~p~r~~~~~~g~~sp~~~~  211 (223)
T d1bcoa2         177 ELFLKTLAEGVAMFNARTGRETEMCGGKLSFDDVF  211 (223)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSTTTTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccCCCCCHHHHH
Confidence            3446667778889999987543    3 4777754