Psyllid ID: psy15979

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRIKSAVPRF
Secondary Structure (PSIPRED)
ccccccccEEEEEcccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEccccccEEcccccccccccEEEEEEEcccccccEEEEEEEEccccccccccEEEEcccccEEEEEEEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccEEEEEEEEccHHHcccEEEEEEcccccEEEEEEEEccccccEEEccccccccccEEEEEEEEcccccEEEEEEEEEcccccccccccccccccccccEEEEEcccccccccccccEccccccHcccccEccccccc
Coil and Loop (DISEMBL)
MRLETTERRIMETRGSRHTLMIRKVVAsdfgnysceatnpmgkhraylelsgkpnpaifrshpqgrlpnsynitwmvssytpleefkikyrkipgnepspmsnqltgtnqyqnrRLVRkrfdrgnstngglivpkakregrqdriksavprf
Flexible Loop (DISEMBL)
mrletterrimetrgsrhtlmiRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGnepspmsnqltgtnqyqnrrlvrkrfdrgnstngglivpkakregrqdriksavprf
Low Complexity Region (SEG)
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRIKSAVPRF
Disordered region (IsUnstruct)
******************TLMIRKVVASDFGNYSCEATNPMGKHRAYLE****************RLPNSYNITWMVSSYTPLEEFKIKYRK************************************************************
Disordered Region (DISOPRED)
*R***TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN************PNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRK***********************DRIKSA*P**
Disordered Region (DISEMBL)
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRIKSAVPRF
Disordered Region (DISPRO)
****TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRIKSAVP*F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRIKSAVPRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
242018223	500	limbic system-associated membrane protei	0.611	0.186	0.709	4e-33
328701975	551	PREDICTED: neural cell adhesion molecule	0.960	0.264	0.506	2e-31
328701973	535	PREDICTED: neural cell adhesion molecule	0.960	0.272	0.506	3e-31
242021179	454	limbic system-associated membrane protei	0.638	0.213	0.656	1e-30
270003594	240	hypothetical protein TcasGA2_TC002850 [T	0.684	0.433	0.554	1e-28
91079206	551	PREDICTED: similar to CG34353 CG34353-PA	0.684	0.188	0.554	3e-28
195352945	271	GM16324 [Drosophila sechellia] gi|194127	0.638	0.357	0.612	1e-27
92109994	518	IP03437p [Drosophila melanogaster]	0.638	0.187	0.602	5e-27
161078695	566	CG34353, isoform A [Drosophila melanogas	0.638	0.171	0.602	5e-27
108743667	413	IP03330p [Drosophila melanogaster]	0.618	0.227	0.606	5e-27

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 78/93 (83%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +RL+TTERR ME RGSRHTL+IRKV ASDFGNYSC A NP+GK R YL+LSGKPN  +FR
Sbjct: 260 LRLDTTERRSMEVRGSRHTLIIRKVQASDFGNYSCVADNPLGKMRQYLQLSGKPNQVVFR 319

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKI 93
           S P GR  +SYNITW V+SYTP+EEFK+ +RK+
Sbjct: 320 SEPMGRYKDSYNITWAVNSYTPIEEFKLYFRKL 352

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701975|ref|XP_003241763.1| PREDICTED: neural cell adhesion molecule 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 94/150 (62%), Gaps = 4/150 (2%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           ++L+T ERRI E RGSRHTL++RKV ASDFGNYSC A N +GK RAY+ELSGKPNP    
Sbjct: 300 LKLDTNERRITEVRGSRHTLIVRKVQASDFGNYSCVADNVVGKSRAYVELSGKPNPVKIN 359

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKR 120
           S+  GR  N+YNI+W V SYTP+EEFK+ YRK+P  + SP   +     QYQ  +    R
Sbjct: 360 SNKNGRHQNNYNISWSVDSYTPIEEFKLFYRKVPLPDESPADTR----TQYQWPKKPPTR 415

Query: 121 FDRGNSTNGGLIVPKAKREGRQDRIKSAVP 150
            D     N  +    + R    D I  AVP
Sbjct: 416 NDNEGYGNSPIYGYNSMRNEWNDVILPAVP 445

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701973|ref|XP_001945384.2| PREDICTED: neural cell adhesion molecule 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 94/150 (62%), Gaps = 4/150 (2%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           ++L+T ERRI E RGSRHTL++RKV ASDFGNYSC A N +GK RAY+ELSGKPNP    
Sbjct: 300 LKLDTNERRITEVRGSRHTLIVRKVQASDFGNYSCVADNVVGKSRAYVELSGKPNPVKIN 359

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKR 120
           S+  GR  N+YNI+W V SYTP+EEFK+ YRK+P  + SP   +     QYQ  +    R
Sbjct: 360 SNKNGRHQNNYNISWSVDSYTPIEEFKLFYRKVPLPDESPADTR----TQYQWPKKPPTR 415

Query: 121 FDRGNSTNGGLIVPKAKREGRQDRIKSAVP 150
            D     N  +    + R    D I  AVP
Sbjct: 416 NDNEGYGNSPIYGYNSMRNEWNDVILPAVP 445

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021179|ref|XP_002431023.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212516252|gb|EEB18285.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 80/99 (80%), Gaps = 2/99 (2%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +RL+TTERR  ETRGSRHTL+IRKV ASDFGNYSC A N +GK R YL+LSGKPN   F 
Sbjct: 245 LRLDTTERRSFETRGSRHTLIIRKVQASDFGNYSCVADNTLGKMRQYLQLSGKPNQVAFN 304

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP--GNE 97
           S+P  R  +SYNI+W+V+SYTP+EEFK+ +R+IP  GN+
Sbjct: 305 SNPVSRYHDSYNISWIVNSYTPIEEFKLFFRRIPETGNQ 343

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003594|gb|EFA00042.1| hypothetical protein TcasGA2_TC002850 [Tribolium castaneum]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 6/110 (5%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTERRIME+RGSRHTL+IRKV  SDFGNY+C A N +GK R  ++L+GKPNPA F 
Sbjct: 1   MQLDTTERRIMESRGSRHTLLIRKVHRSDFGNYTCVADNQLGKTRKSVQLTGKPNPAKFN 60

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN------EPSPMSNQ 104
           S  +G   +SYNI+W V SY+P+EE+K+ +R++P N       P P+ +Q
Sbjct: 61  SATRGNWRDSYNISWAVESYSPIEEYKLLFRELPDNPGSDDGHPQPLHHQ 110

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079206|ref|XP_969693.1| PREDICTED: similar to CG34353 CG34353-PA [Tribolium castaneum]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 6/110 (5%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTERRIME+RGSRHTL+IRKV  SDFGNY+C A N +GK R  ++L+GKPNPA F 
Sbjct: 312 MQLDTTERRIMESRGSRHTLLIRKVHRSDFGNYTCVADNQLGKTRKSVQLTGKPNPAKFN 371

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN------EPSPMSNQ 104
           S  +G   +SYNI+W V SY+P+EE+K+ +R++P N       P P+ +Q
Sbjct: 372 SATRGNWRDSYNISWAVESYSPIEEYKLLFRELPDNPGSDDGHPQPLHHQ 421

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195352945|ref|XP_002042971.1| GM16324 [Drosophila sechellia] gi|194127036|gb|EDW49079.1| GM16324 [Drosophila sechellia]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
          M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 1  MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 60

Query: 61 SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP-GNE 97
          S P  +  + YNI+W V S++P+EE+K+ YRK+P G+E
Sbjct: 61 SPPISQYKDRYNISWAVDSHSPIEEYKLSYRKLPQGHE 98

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|92109994|gb|ABE73321.1| IP03437p [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 263 MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 322

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP-GNE 97
           S P  +  + YNI+W V S++P+EE+K+ +RK+P G+E
Sbjct: 323 SPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLPQGHE 360

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161078695|ref|NP_001097949.1| CG34353, isoform A [Drosophila melanogaster] gi|386766647|ref|NP_001247342.1| CG34353, isoform B [Drosophila melanogaster] gi|158030420|gb|ABW08787.1| CG34353, isoform A [Drosophila melanogaster] gi|383292993|gb|AFH06659.1| CG34353, isoform B [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 311 MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 370

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP-GNE 97
           S P  +  + YNI+W V S++P+EE+K+ +RK+P G+E
Sbjct: 371 SPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLPQGHE 408

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|108743667|gb|ABG02142.1| IP03330p [Drosophila melanogaster]

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 73/94 (77%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 145 MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 204

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP 94
           S P  +  + YNI+W V S++P+EE+K+ +RK+P
Sbjct: 205 SPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLP 238

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.625	0.174	0.526	1.7e-23
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.625	0.203	0.442	8.5e-18
FB|FBgn0025878	500	wrapper "wrapper" [Drosophila	0.526	0.16	0.362	5.8e-12

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 50/95 (52%), Positives = 67/95 (70%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
             +++T+RRIM TR +RH L IR +   DFGNYSC A N +G+ R Y+ELSG+P  A F S 
Sbjct:   328 IQSTDRRIMATRANRHMLTIRHIQQEDFGNYSCVADNSLGRSRKYMELSGRPGAAEFYSP 387

Query:    63 PQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
               GR P+SYN+TW + SY PLEE ++ YR++  NE
Sbjct:   388 KWGRSPDSYNLTWKIDSYPPLEEVRLLYRRVQMNE 422

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 42/95 (44%), Positives = 61/95 (64%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
             L+ T+RR M  R  R++L+IR    +DFGNYSC A N +G+ + Y+E+SG+P PA F S 
Sbjct:   265 LDATDRRSMYPRDDRYSLIIRNFQPTDFGNYSCVADNALGRTKKYIEVSGRPGPADFISP 324

Query:    63 PQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
                   + YN+TW + S  PL+E K+ YR++  NE
Sbjct:   325 ALSGFLDHYNLTWTIESIPPLDEIKLLYRRLLMNE 359

GO:0005576 "extracellular region" evidence=ISS

FB|FBgn0025878 wrapper "wrapper" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 29/80 (36%), Positives = 48/80 (60%)

Query:    17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWM 76
             RH L+++ V  +D G Y C A+N +      +EL+G+P P +F+ +P  +   S+ + W 
Sbjct:   289 RHMLVVKSVRNADMGQYECRASNQISVKSGSVELTGRPMPCLFKINPGTQSSTSHVLVWQ 348

Query:    77 VSSYTPLEEFKIKYRKIPGN 96
               S  P+ EFK+K+R+IP N
Sbjct:   349 TESLLPIMEFKLKFRQIPSN 368


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       152   0.00073  105 3  11 22  0.50    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  17.46u 0.08s 17.54t   Elapsed:  00:00:33
  Total cpu time:  17.46u 0.08s 17.54t   Elapsed:  00:00:36
  Start:  Thu Aug 15 12:44:31 2013   End:  Thu Aug 15 12:45:07 2013

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0042063 "gliogenesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IEP

GO:0007409 "axonogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	152
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-05
smart00409	85	smart00409, IG, Immunoglobulin	3e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	5e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	5e-04

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          L +++R  +   G  +TL I  V   D G Y+C ATN  G+  A  EL
Sbjct: 41 LRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          L  + R  +   GS  TL I  V   D G Y+C ATN  G   +   L+
Sbjct: 36 LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          L  + R  +   GS  TL I  V   D G Y+C ATN  G   +   L+
Sbjct: 36 LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49
           T  R    T     TL I  V   D G Y+C A+N  G   A + 
Sbjct: 29 LTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRA 46
           +L IR V A D G+Y+CEA N +GK  A
Sbjct: 35 KSLKIRNVTAGDEGSYTCEAENMVGKIEA 63

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          L+ + R  +ET  S  +L+I+    SD G Y+    NP G+  A + +
Sbjct: 25 LKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44
          R  + + G   TL IR V  SD G Y+CEA N  G  
Sbjct: 32 RVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG3513|consensus	1051		99.77
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.37
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.23
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.17
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.13
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.12
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.12
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.12
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.09
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.08
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.07
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.07
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.07
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.06
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.03
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.02
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.02
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.02
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.01
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.01
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.0
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.99
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.98
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.97
KOG4221|consensus	1381		98.96
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.96
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.96
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.96
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.95
KOG3513|consensus	1051		98.93
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.91
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.91
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.9
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.89
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.89
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.87
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.87
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.87
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.85
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.84
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.84
KOG4221|consensus	1381		98.84
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.83
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.83
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.82
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.81
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.81
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.81
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.78
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.77
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.75
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.75
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.74
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.74
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.74
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.73
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.72
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.72
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.72
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.71
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.7
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.69
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.67
PHA02785	326	IL-beta-binding protein; Provisional	98.66
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.65
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.63
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.63
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.61
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.6
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.58
PHA02826	227	IL-1 receptor-like protein; Provisional	98.58
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.56
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.54
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.53
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.52
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.52
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.51
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.5
KOG4194|consensus	873		98.48
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.48
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.47
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.45
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.4
KOG4222|consensus	1281		98.36
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.33
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.32
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.32
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.31
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.3
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.26
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.25
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.24
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.22
smart00409	86	IG Immunoglobulin.	98.21
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.21
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.17
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.16
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.15
KOG4222|consensus	1281		98.14
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.1
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.1
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.1
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.09
PHA02785	326	IL-beta-binding protein; Provisional	98.07
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.06
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.03
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.03
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.02
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.01
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.99
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.99
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.93
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.92
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.92
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.9
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.86
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.83
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.83
KOG4194|consensus	873		97.8
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.77
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.72
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.71
KOG0196|consensus	996		97.7
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.69
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.69
PHA02826	227	IL-1 receptor-like protein; Provisional	97.68
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.68
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.68
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.66
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.63
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.61
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.6
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.53
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.49
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.48
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.45
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.44
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.43
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.42
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.36
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.35
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.34
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.33
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.29
smart00406	81	IGv Immunoglobulin V-Type.	97.2
PHA02633	63	hypothetical protein; Provisional	97.18
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.17
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.02
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.01
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	96.93
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.9
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	96.82
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.81
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.79
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.62
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	96.56
PHA03376	221	BARF1; Provisional	96.38
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.32
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.1
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	95.95
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.71
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	95.61
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	95.44
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	94.94
KOG4367|consensus	699		94.54
PHA02982	251	hypothetical protein; Provisional	94.4
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	93.85
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	93.23
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	93.13
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	92.59
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	91.99
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	91.35
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	91.16
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	89.72
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	89.5
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	88.82
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	88.79
KOG1480|consensus	909		88.19
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	88.04
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	87.2
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	87.16
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	87.02
KOG4258|consensus	1025		86.08
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	85.72
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	85.6
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	85.55
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	85.46
KOG3515|consensus	741		85.44
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	85.4
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	85.35
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	85.23
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	85.07
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	84.29
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	83.91
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	83.76
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	83.04
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	82.65
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	82.55
KOG4802|consensus	516		82.49
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	82.35
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	82.33
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	82.26
KOG0196|consensus	996		82.23
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	82.18
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	82.15
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	82.02
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	80.45
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	80.04
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	80.01

>KOG3513|consensus

Probab=99.77  E-value=4.6e-18  Score=149.73  Aligned_cols=122  Identities=24%  Similarity=0.362  Sum_probs=93.7

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-----------------------------------
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----------------------------------   47 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-----------------------------------   47 (152)
                      +.+++||.+..+|   +|.|.|++++|+|.|+|+|+|.+|+++++                                   
T Consensus       467 ~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD  543 (1051)
T KOG3513|consen  467 LLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHD  543 (1051)
T ss_pred             cccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccC
Confidence            4567899997554   89999999999999999999999999885                                   


Q ss_pred             -----------------------------------------------------------------EEEecCCCCceeecC
Q psy15979         48 -----------------------------------------------------------------LELSGKPNPAIFRSH   62 (152)
Q Consensus        48 -----------------------------------------------------------------~~v~~~P~p~~~~~~   62 (152)
                                                                                       +.|.++|.||.....
T Consensus       544 ~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~  623 (1051)
T KOG3513|consen  544 PSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHV  623 (1051)
T ss_pred             CCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeE
Confidence                                                                             333466665542110


Q ss_pred             CCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCC-------C-------cceEEecCCCeEEEEEEEEcCCCCCCC
Q psy15979         63 PQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP-------S-------PMSNQLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        63 ~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~-------~-------~~~~~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                       .....+++.|+|...  +++||..|.+++|......|       .       .....|.++..|+|||.|.|.+|.|+|
T Consensus       624 -~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~geP  702 (1051)
T KOG3513|consen  624 -DDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEP  702 (1051)
T ss_pred             -eeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCC
Confidence             123468999999974  45899999999987643321       1       124578999999999999999999999


Q ss_pred             CC
Q psy15979        127 TN  128 (152)
Q Consensus       127 s~  128 (152)
                      |.
T Consensus       703 S~  704 (1051)
T KOG3513|consen  703 SP  704 (1051)
T ss_pred             CC
Confidence            96

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.37  E-value=2.1e-12  Score=86.49  Aligned_cols=56  Identities=25%  Similarity=0.422  Sum_probs=48.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPA   57 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~   57 (152)
                      +|..++|+.+......+.|+|.++..+|+|.|+|.|+|.+|.+++++.|  .++|.||
T Consensus        40 ~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          40 QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence            5677888999887788999999999999999999999999999986554  5788776

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.23  E-value=4.9e-11  Score=75.30  Aligned_cols=50  Identities=30%  Similarity=0.470  Sum_probs=44.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|.
T Consensus        24 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05748          24 PLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK   73 (74)
T ss_pred             EcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence            45567888888777789999999999999999999999999999988774

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.17  E-value=1.4e-10  Score=76.06  Aligned_cols=51  Identities=33%  Similarity=0.554  Sum_probs=39.8

Q ss_pred             CcEEEEE----cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCc
Q psy15979          7 ERRIMET----RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (152)
Q Consensus         7 ~r~~i~~----~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~   57 (152)
                      .||.+..    ....+.|.|.++..+|+|.|+|+|.|.+|.+++.+.|.  .+|.||
T Consensus        32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P   88 (88)
T cd05735          32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP   88 (88)
T ss_pred             CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence            4776653    12337899999999999999999999999999876655  566654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.13  E-value=2.5e-10  Score=74.58  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=43.1

Q ss_pred             cccC-CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLET-TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~-~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|.. ++|+.+...+..+.|.|.++.++|+|.|+|.|+|.+|.+.+++.|.
T Consensus        35 ~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~   85 (86)
T cd05894          35 AFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK   85 (86)
T ss_pred             ECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence            3433 4688888777788999999999999999999999999999988775

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.12  E-value=1.8e-10  Score=73.08  Aligned_cols=47  Identities=30%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.|+.+..+   ++|.|.+++.+|+|.|+|.|+|.+|.+.++..|+
T Consensus        26 ~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852          26 LLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             ecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            3556778888643   4799999999999999999999999999987764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.12  E-value=2.1e-10  Score=74.25  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=33.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..+.|.|.+++++|+|.|+|+|+|.+|.+++++.|.
T Consensus        44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971          44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            466899999999999999999999999999988774

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.12  E-value=2.5e-10  Score=72.81  Aligned_cols=50  Identities=28%  Similarity=0.367  Sum_probs=40.3

Q ss_pred             ccc-CCCcEEEEEcC-CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLE-TTERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~-~~~r~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|. +++|+++..++ ...+|.|.+++.+|+|.|+|.|.|.+|.+.++..|.
T Consensus        23 ~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892          23 MVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             ECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            344 34788886543 345899999999999999999999999999887764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.09  E-value=4.1e-10  Score=74.10  Aligned_cols=50  Identities=30%  Similarity=0.423  Sum_probs=43.8

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|+
T Consensus        43 ~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   92 (92)
T cd05747          43 IIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT   92 (92)
T ss_pred             ECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEeC
Confidence            35567789888777788999999999999999999999999999987763

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.08  E-value=4.1e-10  Score=74.64  Aligned_cols=49  Identities=29%  Similarity=0.533  Sum_probs=41.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE-EEEEE
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLEL   50 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~~~v   50 (152)
                      +|.+++|+.+..++..+.|.|.++..+|+|.|+|.|.|..|... .++.|
T Consensus        40 ~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l   89 (92)
T cd05866          40 KIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL   89 (92)
T ss_pred             EecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence            35567889888777788999999999999999999999999874 35554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.07  E-value=3.3e-10  Score=73.09  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=38.9

Q ss_pred             cccCCCcEEE--E---EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIM--E---TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i--~---~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|++++++..  .   .....+.|.|.++..+|+|.|+|+|+|.+|+++.++.+.
T Consensus        23 ~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855          23 ILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             ECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            4666665432  1   223467899999999999999999999999999987763

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.07  E-value=4.8e-10  Score=73.82  Aligned_cols=50  Identities=22%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             cccCCCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..++++.+... +....|.|.+++.+|+|.|+|.|+|.+|.+...+.|.
T Consensus        41 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05737          41 ALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS   91 (92)
T ss_pred             ECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence            4566778877644 4467899999999999999999999999999988775

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.07  E-value=3.1e-10  Score=70.86  Aligned_cols=47  Identities=28%  Similarity=0.418  Sum_probs=39.0

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|+
T Consensus        23 ~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt   69 (69)
T cd05746          23 QVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS   69 (69)
T ss_pred             ECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence            355567777743   35899999999999999999999999999887763

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.06  E-value=3.2e-10  Score=74.16  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.||.+... ...+.|+|.|++.+|+|+|+|+|+|.+++..++..|.
T Consensus        34 ~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853          34 GDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            346665421 2356899999999999999999999999998865554

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.03  E-value=9.7e-10  Score=69.00  Aligned_cols=47  Identities=26%  Similarity=0.305  Sum_probs=38.9

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|.+++++.+..++   .|.|.+++.+|+|.|+|+|+|.+|+++++++|.
T Consensus        24 ~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723          24 MVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             ECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            35556777776443   588999999999999999999999999988774

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.02  E-value=7.3e-10  Score=70.03  Aligned_cols=46  Identities=33%  Similarity=0.571  Sum_probs=38.2

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      |..+.++.+..   .+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|.
T Consensus        28 ~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745          28 LSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            45566666643   34899999999999999999999999999987764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.02  E-value=1.3e-09  Score=72.72  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=37.7

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCC-CceEEEEEEe
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~v~   51 (152)
                      +.|+.+.. .+..++|.|.+++.+|+|.|+|+|+|.+ |.+++++.|.
T Consensus        47 ~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~   94 (96)
T cd05865          47 QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVK   94 (96)
T ss_pred             CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEE
Confidence            45666643 3446889999999999999999999997 9999887764

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.02  E-value=1.3e-09  Score=72.60  Aligned_cols=46  Identities=30%  Similarity=0.496  Sum_probs=39.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ++|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus        52 ~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   97 (98)
T cd05870          52 DGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD   97 (98)
T ss_pred             CceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence            4678886655667899999999999999999999999999887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.01  E-value=1.2e-09  Score=69.57  Aligned_cols=46  Identities=26%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             CCcEEEEEcC-CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+|+.+...+ ....|.|.+++.+|+|.|+|.|.|.+|+++++..|.
T Consensus        28 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893          28 TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            4678876543 334799999999999999999999999999887664

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.01  E-value=7.8e-10  Score=69.65  Aligned_cols=47  Identities=34%  Similarity=0.374  Sum_probs=39.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..++|+.+..+   +.|.|.+++.+|+|.|+|+|.|.+|.+++++.|.
T Consensus        26 ~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969          26 LLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             EcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            3456678877533   4799999999999999999999999999987764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.00  E-value=1.9e-09  Score=68.53  Aligned_cols=46  Identities=26%  Similarity=0.307  Sum_probs=38.1

Q ss_pred             CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+|+.+... .....|.|.+++.+|+|.|+|.|.|.+|.+.+...|.
T Consensus        28 ~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744          28 TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            467777544 3455799999999999999999999999999887764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.99  E-value=1.1e-09  Score=69.92  Aligned_cols=46  Identities=35%  Similarity=0.494  Sum_probs=39.8

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      +|..+.|+++...+..+.|.|.+++.+|+|.|+|.|.|.+|...+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743          26 HVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             ECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence            3556678888777777899999999999999999999999988764

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.98  E-value=1.7e-09  Score=72.84  Aligned_cols=50  Identities=20%  Similarity=0.243  Sum_probs=39.1

Q ss_pred             cccCCCcEEEEEc-----CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETR-----GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~-----~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.++.+...     ...+.|.|..+.++|+|.|+|+|+|.+|.++.++.|.
T Consensus        44 ~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~   98 (101)
T cd04975          44 TLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELY   98 (101)
T ss_pred             eCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEE
Confidence            4555555544332     1357899999999999999999999999999887765

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.97  E-value=2.2e-09  Score=70.75  Aligned_cols=46  Identities=26%  Similarity=0.500  Sum_probs=39.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.|+.+......+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|.
T Consensus        50 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~   95 (96)
T cd05732          50 DGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE   95 (96)
T ss_pred             cceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence            3466666556678999999999999999999999999999887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>KOG4221|consensus

Probab=98.96  E-value=9.3e-09  Score=92.22  Aligned_cols=115  Identities=13%  Similarity=0.227  Sum_probs=82.7

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEEC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKI   93 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~   93 (152)
                      ..++|.|+++.-.-...|.|.|..|+..++  +.|+-.|.++.. .........++.+.|..+.  +.||+.|++.|...
T Consensus       483 ~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~  561 (1381)
T KOG4221|consen  483 IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED  561 (1381)
T ss_pred             eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCcc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC
Confidence            556666666544444456889999988774  677666654444 3334556789999999864  57999999999887


Q ss_pred             CCCC-----CCcceEEe---cCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         94 PGNE-----PSPMSNQL---TGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        94 ~~~~-----~~~~~~~L---~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      +...     ....+++|   .+.++|.|||.|.|++|.|..|+...|.
T Consensus       562 ~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~  609 (1381)
T KOG4221|consen  562 DTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVR  609 (1381)
T ss_pred             CCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEE
Confidence            3322     22345554   4499999999999999999999887663

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.96  E-value=1.8e-09  Score=70.02  Aligned_cols=50  Identities=32%  Similarity=0.591  Sum_probs=45.3

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.++.+...+..+.|.|.+++.+|+|.|+|.|+|..|.+++.+.|.
T Consensus        40 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   40 PLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT   89 (90)
T ss_dssp             EEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            45668899998888999999999999999999999999999999987774

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.96  E-value=2.7e-09  Score=69.51  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=32.3

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..+.|+|.+++.+|+|.|+|+|.|.+|.++++..|.
T Consensus        45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854          45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            457899999999999999999999999999976654

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.96  E-value=2.9e-09  Score=67.46  Aligned_cols=43  Identities=19%  Similarity=0.381  Sum_probs=36.4

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~   49 (152)
                      .|+.+......+.|.|.+++.+|+|.|+|+|.|.+|.++.++.
T Consensus        33 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895          33 NKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             ceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            3455555566789999999999999999999999999988765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.95  E-value=3.7e-09  Score=70.25  Aligned_cols=45  Identities=20%  Similarity=0.443  Sum_probs=38.1

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|.
T Consensus        52 ~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   96 (97)
T cd05869          52 GHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE   96 (97)
T ss_pred             ccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence            456665555567899999999999999999999999999987764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>KOG3513|consensus

Probab=98.93  E-value=8.6e-09  Score=91.93  Aligned_cols=120  Identities=23%  Similarity=0.267  Sum_probs=78.0

Q ss_pred             cccCCCc---EEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-----CCCCCeEEE
Q psy15979          2 RLETTER---RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-----GRLPNSYNI   73 (152)
Q Consensus         2 ~l~~~~r---~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-----~~~~~~~~L   73 (152)
                      ||...+|   ++|.    .+.|.|.+|+.+|+|.|.|.|+|.+|..-+...|.+...+|.+...++     ......+.|
T Consensus       371 pl~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i  446 (1051)
T KOG3513|consen  371 PLEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTI  446 (1051)
T ss_pred             ecCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEE
Confidence            5555555   8885    458999999999999999999999999998777765443333322221     223567788


Q ss_pred             EEEecCCCCcceEEEEEEECCCCC--------CCcceEEecC-----CCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         74 TWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQLTG-----TNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        74 ~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~L~~-----~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      .|.+.+- |-..|.|.  +.+...        ..+.++.|.+     ++.|.|  .|+|++|.-+.+...
T Consensus       447 ~C~~~as-P~p~~~W~--k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC--~A~N~~G~a~~~~~L  511 (1051)
T KOG3513|consen  447 DCKPFAS-PKPKVSWL--KGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTC--VAENKLGKAESTGNL  511 (1051)
T ss_pred             eeccCCC-CcceEEEE--cCCcccccCceEEECCCCcEEecccCcccCcEEEE--EEEcccCccceEEEE
Confidence            8887653 33334443  221100        1112333333     899999  889999998776544

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.91  E-value=4e-09  Score=66.28  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=33.5

Q ss_pred             EEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979         11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (152)
Q Consensus        11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~   49 (152)
                      +......+.|.|.+++.+|+|.|+|+|.|.+|.+..++.
T Consensus        36 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          36 IRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             EEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            444456788999999999999999999999999887654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.91  E-value=5.5e-09  Score=64.96  Aligned_cols=43  Identities=40%  Similarity=0.555  Sum_probs=35.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|.+.+.+.|.
T Consensus        26 ~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725          26 KGRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CCcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            35666653   34799999999999999999999999999887764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.90  E-value=7.1e-09  Score=65.49  Aligned_cols=44  Identities=30%  Similarity=0.394  Sum_probs=35.8

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.|+.+...  .+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.
T Consensus        30 ~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763          30 ERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             ccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            456665433  35899999999999999999999999988876664

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.89  E-value=2.7e-09  Score=67.12  Aligned_cols=45  Identities=31%  Similarity=0.437  Sum_probs=34.9

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      |..+.++.+    ..+.|.|.+++.+|+|.|+|.|.|.+|..+..+.+.
T Consensus        24 l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976          24 ISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            444444433    246899999999999999999999999887765543

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.89  E-value=4.7e-09  Score=66.45  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      ++.+.  +....|.|.+++.+|+|.|+|.|.|.+|.++.++.|.+.
T Consensus        31 ~~~~~--~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736          31 QLTLI--ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             cEEEe--CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            44443  345689999999999999999999999999998877653

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.87  E-value=6.8e-09  Score=65.30  Aligned_cols=44  Identities=30%  Similarity=0.455  Sum_probs=35.4

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.++.+..   .+.|.|.++..+|+|.|+|+|+|.+|.+++.+.|.
T Consensus        30 ~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764          30 NSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            344554433   34799999999999999999999999998887764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.87  E-value=4.1e-09  Score=65.86  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...+.|.|.++..+|+|.|+|+|+|.+|..+.++.+.
T Consensus        28 ~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   64 (67)
T cd05863          28 HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE   64 (67)
T ss_pred             CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence            3567899999999999999999999999887765543

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.87  E-value=6.7e-09  Score=65.15  Aligned_cols=36  Identities=33%  Similarity=0.549  Sum_probs=32.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..+.|.|.+++.+|+|.|+|.|+|.+|.++.++.|.
T Consensus        34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05876          34 NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT   69 (71)
T ss_pred             CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence            456899999999999999999999999999887765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.85  E-value=9e-09  Score=67.89  Aligned_cols=49  Identities=27%  Similarity=0.413  Sum_probs=39.8

Q ss_pred             ccCCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          3 LETTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         3 l~~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +..++++.+.. .+..++|.|.+++.+|+|.|+|.|+|.+|.+++.+.|.
T Consensus        42 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05891          42 IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS   91 (92)
T ss_pred             CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence            45566776643 33346899999999999999999999999999988875

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.84  E-value=8.1e-09  Score=66.84  Aligned_cols=36  Identities=31%  Similarity=0.442  Sum_probs=31.7

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..+.|.|.+++.+|+|+|+|+|.|.+|.++++..|.
T Consensus        45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970          45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            457899999999999999999999999988865554

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.84  E-value=6.9e-09  Score=69.84  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=31.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .++|.|.+++.+|+|.|+|+|+|..|.++.++.|.
T Consensus        64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~   98 (101)
T cd05859          64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQ   98 (101)
T ss_pred             ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEE
Confidence            47899999999999999999999999998876664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>KOG4221|consensus

Probab=98.84  E-value=2.8e-08  Score=89.24  Aligned_cols=116  Identities=17%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-----EEEecCCCCceeecCCCCCCCCeEEEEEEecC----CCCcce
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----LELSGKPNPAIFRSHPQGRLPNSYNITWMVSS----YTPLEE   85 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-----~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~----~~pi~~   85 (152)
                      .+...++|.++.+.+.-.|.|+|.|.+|...++     +.+.+.|.+|..........++++.+.|..+.    ...++.
T Consensus       571 ~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itg  650 (1381)
T KOG4221|consen  571 NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITG  650 (1381)
T ss_pred             cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEE
Confidence            356789999999999999999999999987774     34457786543322222456899999999753    246788


Q ss_pred             EEEEEEECCCCC------CC--c---ceEEecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         86 FKIKYRKIPGNE------PS--P---MSNQLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        86 y~~~~r~~~~~~------~~--~---~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      |.+.|+......      ..  .   ....|++++.|.||+.|.|..|.|.+|+-.
T Consensus       651 YkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~  706 (1381)
T KOG4221|consen  651 YKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWV  706 (1381)
T ss_pred             EEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccce
Confidence            999998664332      11  1   112488899999999999999999988644

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.83  E-value=1e-08  Score=67.09  Aligned_cols=44  Identities=27%  Similarity=0.346  Sum_probs=36.0

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.
T Consensus        37 ~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726          37 SSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            456777743   34799999999999999999999999988865554

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.83  E-value=1e-08  Score=67.08  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ++.|.|.+++.+|+|.|+|+|.|.+|.++....|.
T Consensus        52 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   86 (88)
T cd05851          52 GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVY   86 (88)
T ss_pred             CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            35899999999999999999999999999877664

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.82  E-value=1.2e-08  Score=67.27  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=35.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .++.+.  ...+.|.|.+++.+|+|.|+|.|+|.+|.++..+.|.
T Consensus        49 ~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~   91 (95)
T cd05730          49 EKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK   91 (95)
T ss_pred             CEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence            455553  3346799999999999999999999999999887765

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.81  E-value=5.1e-09  Score=65.89  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=29.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      .+.|.|.++.++|+|.|+|+|.|.+|.++....+
T Consensus        33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~   66 (70)
T cd05864          33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF   66 (70)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence            3579999999999999999999999988775443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.81  E-value=2e-08  Score=64.68  Aligned_cols=36  Identities=33%  Similarity=0.566  Sum_probs=32.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ....|.|.++..+|+|.|+|+|.|.+|+++.++.|.
T Consensus        49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857          49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            456799999999999999999999999999987774

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.81  E-value=1.2e-08  Score=65.38  Aligned_cols=46  Identities=24%  Similarity=0.543  Sum_probs=38.8

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.|+.+.    ...|.|.+++.+|+|.|+|.|.|..|.+...+.|.
T Consensus        33 ~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973          33 QLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             CCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            56677788774    24799999999999999999999999988877664

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.78  E-value=3.6e-08  Score=64.51  Aligned_cols=44  Identities=18%  Similarity=0.365  Sum_probs=36.0

Q ss_pred             cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.........+.|.|.+++.+|.|.|+|.|+|.+|.+.+.+.|.
T Consensus        46 ~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          46 TDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             cEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            33333344567899999999999999999999999999987764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.77  E-value=1.6e-08  Score=65.57  Aligned_cols=46  Identities=37%  Similarity=0.422  Sum_probs=38.1

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.++.+.    ++.|.|.+++.+|+|.|+|.|.|.+|...+++.|.
T Consensus        39 ~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05728          39 PLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA   84 (85)
T ss_pred             ECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence            35556676653    34799999999999999999999999999987775

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.75  E-value=1.1e-08  Score=63.54  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=32.7

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ..+.|.|.+++.+|+|.|+|+|.|.+|..+.++.|..
T Consensus        34 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          34 FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            3468999999999999999999999999998877653

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.75  E-value=9.4e-09  Score=67.43  Aligned_cols=35  Identities=31%  Similarity=0.501  Sum_probs=31.3

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...|.|.+|+.+|+|.|+|+|.|.+|.+.++..|.
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~   88 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLT   88 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcccCCEEEE
Confidence            45899999999999999999999999998876664

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.74  E-value=4.1e-08  Score=66.81  Aligned_cols=47  Identities=26%  Similarity=0.361  Sum_probs=36.7

Q ss_pred             CCcEEEEE--c--CCEeEEEEceeC-CCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          6 TERRIMET--R--GSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         6 ~~r~~i~~--~--~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +.||.+..  .  ...+.|.|.++. .+|+|.|+|.|.|.+|.+...+.|..
T Consensus        53 ~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~  104 (109)
T cd05773          53 NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVS  104 (109)
T ss_pred             CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence            45776542  1  125789999997 69999999999999999998877753

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.74  E-value=2.5e-08  Score=63.46  Aligned_cols=35  Identities=37%  Similarity=0.472  Sum_probs=32.2

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|.|.+++.+|+|.|+|.|.|.+|.+.+.+.|+
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            46899999999999999999999999999988775

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.74  E-value=2e-08  Score=63.22  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=32.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|..|.+.+.+.|.
T Consensus        39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978          39 DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            356899999999999999999999999999877664

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.73  E-value=4.9e-08  Score=64.35  Aligned_cols=47  Identities=30%  Similarity=0.392  Sum_probs=35.1

Q ss_pred             CCCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCc-eEEEEEEe
Q psy15979          5 TTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGK-HRAYLELS   51 (152)
Q Consensus         5 ~~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-~~~~~~v~   51 (152)
                      +.+++.+. +....++|+|.+++.+|+|.|+|.|.|.+|. .+.++.|.
T Consensus        43 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          43 TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            33455444 3445679999999999999999999999764 55566553

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.72  E-value=4.2e-08  Score=65.22  Aligned_cols=45  Identities=36%  Similarity=0.485  Sum_probs=36.7

Q ss_pred             CCcEEEEEc----CCEeEEEEceeCCCC-CEEEEEEEEcCCCceEEEEEE
Q psy15979          6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus         6 ~~r~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      +.||.+...    +..++|.|.+++.+| .|.|+|+|.|.+|.+++.+.|
T Consensus        48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            368877643    344689999999945 899999999999999988776

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.72  E-value=4.6e-08  Score=65.56  Aligned_cols=45  Identities=33%  Similarity=0.553  Sum_probs=39.3

Q ss_pred             CCcEEEEEc----CCEeEEEEceeCCCC-CEEEEEEEEcCCCceEEEEEE
Q psy15979          6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus         6 ~~r~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      +.||.|...    +..+.|.|.++..+| .|.|.|.|.|.+|.++..+.|
T Consensus        48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence            478988653    589999999998877 689999999999999998876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.72  E-value=1.5e-08  Score=66.37  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|.|.+++.+|+|.|+|+|.|.+|.+..+..|.
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   88 (90)
T cd05858          54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLT   88 (90)
T ss_pred             eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEE
Confidence            36899999999999999999999999988876554

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.71  E-value=5.6e-08  Score=61.99  Aligned_cols=43  Identities=26%  Similarity=0.483  Sum_probs=33.7

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL   50 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v   50 (152)
                      .++|+.+..   .++|.|.+++.+|+|.|+|+|.|.+|.+.+ .+.|
T Consensus        34 ~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734          34 LAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             cCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            346666643   358999999999999999999999998754 3433

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.70  E-value=6.1e-08  Score=61.60  Aligned_cols=36  Identities=25%  Similarity=0.540  Sum_probs=32.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|.+++++.|.
T Consensus        46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856          46 KKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             ceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            457899999999999999999999999999887764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.69  E-value=4.7e-08  Score=61.74  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      .+.|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus        28 ~~~~~~~~~---~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s   66 (74)
T cd05738          28 SNGRIKQLR---SGALQIENSEESDQGKYECVATNSAGTRYS   66 (74)
T ss_pred             CCCCEEEcC---CcEEEECCCChhhCEEEEEEEECCCCceEc
Confidence            456776642   347999999999999999999999998643

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.67  E-value=3.7e-08  Score=62.42  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|.|.+++.+|+|.|+|.|.|.+|...+...|.
T Consensus        40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867          40 SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            35799999999999999999999999998876664

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.66  E-value=7.2e-07  Score=71.65  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE----EEE--ecCCCCceeecCCC--CCCCCeEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY----LEL--SGKPNPAIFRSHPQ--GRLPNSYNITWMV   77 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~----~~v--~~~P~p~~~~~~~~--~~~~~~~~L~W~~   77 (152)
                      +.|+...   ..+.|.|.+|+.+|+|.|+|.|.|.+|.....    +.|  ..+..||.+..+..  ...+..+.|.|.+
T Consensus       168 ~~r~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a  244 (326)
T PHA02785        168 NKRLKQR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV  244 (326)
T ss_pred             CcceEec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE
Confidence            3455443   23589999999999999999999999976532    233  33334444332211  1225779999998


Q ss_pred             cCCC
Q psy15979         78 SSYT   81 (152)
Q Consensus        78 ~~~~   81 (152)
                      .+++
T Consensus       245 ~g~P  248 (326)
T PHA02785        245 SLRP  248 (326)
T ss_pred             ECCC
Confidence            7654

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.65  E-value=6.8e-08  Score=60.41  Aligned_cols=33  Identities=24%  Similarity=0.506  Sum_probs=28.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...|.|.+++  |+|+|+|+|.|.+|..+++..|+
T Consensus        37 ~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739          37 RNVLELTNIY--ESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence            3479999984  89999999999999999887763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.63  E-value=9.8e-08  Score=60.75  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      .++.+..  ..+.|.|.+++++|+|.|+|.|.|.+|...+
T Consensus        29 ~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   66 (77)
T cd05760          29 GNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCS   66 (77)
T ss_pred             ccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence            3455542  3458999999999999999999999998754

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.63  E-value=5.5e-08  Score=62.74  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|..+.+..|.
T Consensus        47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~   82 (84)
T cd05742          47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVN   82 (84)
T ss_pred             EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEE
Confidence            467899999999999999999999999988876653

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.61  E-value=1.3e-07  Score=62.31  Aligned_cols=42  Identities=31%  Similarity=0.470  Sum_probs=33.2

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL   50 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v   50 (152)
                      +|+.+.  ...+.|.|.+++++|+|.|.|.|.|.+|...+ .+.|
T Consensus        46 ~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L   88 (91)
T cd05740          46 PRLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL   88 (91)
T ss_pred             CCEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence            455554  23458999999999999999999999998766 4444

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.60  E-value=8.1e-08  Score=62.43  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|.|.+++.+|+|.|+|.|.|.+|.+.+...|.
T Consensus        52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   86 (88)
T cd04968          52 GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY   86 (88)
T ss_pred             CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence            46899999999999999999999999998876654

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.58  E-value=8.1e-08  Score=61.02  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.|.|.+++.+|+|.|+|+|+|.+|.+.++..|.
T Consensus        41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868          41 DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            4799999999999999999999999999976664

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.58  E-value=6e-07  Score=68.80  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEec
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVS   78 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~   78 (152)
                      ...|.|.+++.+|+|.|+|+|.|..|..+..+.|...+.+....    ...+..+.|.|...
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~----~~~G~~v~L~C~~~  154 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQ----FNSGKDSKLHCYGT  154 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccce----EecCCCEEEEeeCC
Confidence            45899999999999999999999999988888776644332111    12357888999864

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.56  E-value=3e-07  Score=58.63  Aligned_cols=42  Identities=26%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             cCCCcEEEEEcCCEeEEEEceeC----CCCCEEEEEEEEcCCCceEEE
Q psy15979          4 ETTERRIMETRGSRHTLMIRKVV----ASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus         4 ~~~~r~~i~~~~~~~~L~I~~v~----~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      ..+.++.+.  ...+.|.|.++.    .+|+|.|+|.|+|.+|.+.+.
T Consensus        27 ~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875          27 AKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             cCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            456777764  234689998874    247999999999999988773

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.54  E-value=1.9e-07  Score=59.36  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCEeEEEEceeCC----CCCEEEEEEEEcCCCceEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~   46 (152)
                      .++.+.  ...+.|.|.++..    +|+|.|+|+|+|.+|.+.+
T Consensus        30 ~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733          30 PRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            445443  3456899998854    7999999999999998776

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.53  E-value=2.8e-07  Score=60.95  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=29.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~   49 (152)
                      .++.|.|.++..+|+|.|+|+|.|..|.....+.
T Consensus        50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t   83 (92)
T cd05757          50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT   83 (92)
T ss_pred             cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence            3568999999999999999999999998776544

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.52  E-value=1.9e-07  Score=60.02  Aligned_cols=38  Identities=34%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.++.+..   .+.|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus        42 ~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724          42 NERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            45666643   358999999999999999999999998765

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.52  E-value=1.9e-07  Score=60.51  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=30.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCC--ceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G--~~~~~~~v~   51 (152)
                      ..++|.|.+++.+|+|.|+|.|+|..+  ....++.|+
T Consensus        44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~   81 (84)
T cd05861          44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNIT   81 (84)
T ss_pred             EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEE
Confidence            367899999999999999999999887  555565554

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.51  E-value=8.5e-07  Score=62.52  Aligned_cols=65  Identities=18%  Similarity=0.362  Sum_probs=44.9

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec--CCCCceeecCCCCCCCCeEEEEEEecCCCCc
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVSSYTPL   83 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~--~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi   83 (152)
                      +|+|.+++.+|+|.|+|.+.|..|..+..++|..  +|................+.|.|.+.+..|.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~   68 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPL   68 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCC
Confidence            6999999999999999999999898888666653  3332211111111134668899999875553

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.50  E-value=6.9e-07  Score=56.73  Aligned_cols=61  Identities=20%  Similarity=0.383  Sum_probs=48.1

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..+++.|.|..+.  ..++..|.|+|+......        .....+   .|.+++.|+|+|.|.|..|.|++|
T Consensus        12 ~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~S   85 (85)
T PF00041_consen   12 SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDGEGPPS   85 (85)
T ss_dssp             CSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCcCcCCC
Confidence            5789999999874  578999999999876553        111233   466699999999999999999764

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>KOG4194|consensus

Probab=98.48  E-value=7.6e-07  Score=75.96  Aligned_cols=72  Identities=19%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEecCCCCceeecCCCCCCCCeEEEEEEecCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~   80 (152)
                      +|..++.++  ..+.|.||+.+|.|.|+|.|.|.+|...+  ++.|...|.+.....+.....++.+.|+|..++.
T Consensus       660 RRl~Vmped--d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~  733 (873)
T KOG4194|consen  660 RRLHVMPED--DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA  733 (873)
T ss_pred             heeeecCCC--CEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCC
Confidence            566666543  47899999999999999999999998877  4555567765443332222246788899988654

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.48  E-value=2.6e-07  Score=61.33  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ++.|.|.++..+|+|.|+|++.|..|.++..+.|+
T Consensus        59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~   93 (94)
T cd05756          59 KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT   93 (94)
T ss_pred             CCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence            35899999999999999999999999999988765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.47  E-value=2.8e-07  Score=58.33  Aligned_cols=30  Identities=20%  Similarity=0.119  Sum_probs=25.8

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      .+|.|.+++.+|+|.|+|+|+|........
T Consensus        36 ~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~   65 (72)
T cd07702          36 YSLVIKDVTEEDAGIYTILLGIKQYNLFKN   65 (72)
T ss_pred             CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence            479999999999999999999986655544

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.45  E-value=5.9e-07  Score=57.26  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCC----CCCEEEEEEEEcCCCceEE-EEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA-YLEL   50 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~-~~~v   50 (152)
                      +.++.+.  ...++|.|..+..    .|+|.|+|+|+|.+|.+.+ .++|
T Consensus        29 ~~~~~~~--~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          29 DPKVTMK--PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CCCEEEe--CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            3445543  3346788888764    3889999999999999877 3443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.40  E-value=3.8e-07  Score=59.40  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      ..+.|.|.+++.+|+|.|+|.|+|..|...+...|
T Consensus        48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~   82 (86)
T cd05862          48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIV   82 (86)
T ss_pred             eeeEEEEecCCcccCEEEEEEEeecceEecccEEE
Confidence            46789999999999999999999999987776554

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG4222|consensus

Probab=98.36  E-value=1.3e-06  Score=78.53  Aligned_cols=112  Identities=20%  Similarity=0.266  Sum_probs=77.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe----cCC-------CCceeecCC-----CCCCCCeEEEEEEecC-
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS----GKP-------NPAIFRSHP-----QGRLPNSYNITWMVSS-   79 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~----~~P-------~p~~~~~~~-----~~~~~~~~~L~W~~~~-   79 (152)
                      .+.|+|.++...|.|.|||.|.+..|...-...|.    +..       .|..+...+     .....++++|+|.... 
T Consensus       473 ~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~  552 (1281)
T KOG4222|consen  473 IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSP  552 (1281)
T ss_pred             eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCC
Confidence            45899999999999999999999999876643332    111       111111111     1234689999998742 


Q ss_pred             --CCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         80 --YTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        80 --~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                        ..|+..|+++|-.-...+        +.+..+   .|++...|.|.|+|.|..|.+.|+-
T Consensus       553 sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~  614 (1281)
T KOG4222|consen  553 SGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPST  614 (1281)
T ss_pred             CCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcc
Confidence              358888888874332221        334455   4666999999999999999999875

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.33  E-value=1.3e-06  Score=57.80  Aligned_cols=29  Identities=34%  Similarity=0.554  Sum_probs=25.6

Q ss_pred             eEEEEceeC-CCCCEEEEEEEEcCCCceEE
Q psy15979         18 HTLMIRKVV-ASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        18 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.|.|.++. .+|+|.|+|+|.|.+|...+
T Consensus        58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          58 GNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            479999985 69999999999999998865

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.32  E-value=3.7e-06  Score=53.45  Aligned_cols=37  Identities=30%  Similarity=0.528  Sum_probs=32.4

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .....|.|.+++.+|+|.|+|.|.|..|.++.++.|.
T Consensus        48 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729          48 KKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             CcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            3456799999999999999999999999988877764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.32  E-value=6.7e-07  Score=57.67  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=31.0

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      .+.|.|.+++.+|+|.|+|.|.|.+|..++...|
T Consensus        51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             CCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            4689999999999999999999999999987665

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.31  E-value=3e-06  Score=55.99  Aligned_cols=41  Identities=32%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeC-CCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA-YLEL   50 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-~~~v   50 (152)
                      ++|+.+.    ++.|.|.++. .+|+|.|+|+|+|.+|...+ .++|
T Consensus        49 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          49 NDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            4566553    3579999985 69999999999999998866 3443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.30  E-value=2.9e-06  Score=56.02  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeC-CCCCEEEEEEEEcCCCceEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.++.+.    .+.|.|.++. .+|+|.|+|+|.|.+|...+
T Consensus        50 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          50 ESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            3456553    2479998865 59999999999999998876

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.26  E-value=3.5e-06  Score=56.02  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=28.7

Q ss_pred             CCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         5 ~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+.|+.+.. .....+|.|.+|+.+|+|.|+|.+..
T Consensus        48 ~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          48 RDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             eCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            457777653 33468999999999999999999998

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.25  E-value=1.1e-06  Score=58.74  Aligned_cols=39  Identities=38%  Similarity=0.577  Sum_probs=30.4

Q ss_pred             cCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979          4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (152)
Q Consensus         4 ~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (152)
                      ..++|..+..  ..+.|.|.+|+.+|+|+|+|.|+|.++..
T Consensus        48 ~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          48 PEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            3455554432  35689999999999999999999988665

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.24  E-value=3.5e-06  Score=55.86  Aligned_cols=45  Identities=29%  Similarity=0.234  Sum_probs=36.3

Q ss_pred             CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|+.+..   ..+..+|.|.+++.+|+|.|+|.+.|.-|..+..+.|.
T Consensus        51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~   98 (100)
T cd05713          51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELK   98 (100)
T ss_pred             ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEE
Confidence            4666642   23567899999999999999999999888888877764

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.22  E-value=3.1e-06  Score=55.29  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=25.4

Q ss_pred             eEEEEceeCC-CCCEEEEEEEEcCCCceEE
Q psy15979         18 HTLMIRKVVA-SDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        18 ~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.|.|.++.. +|+|.|+|+|+|.+|.+.+
T Consensus        58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          58 GNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            4799998874 9999999999999998765

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>smart00409 IG Immunoglobulin

Probab=98.21  E-value=1e-05  Score=50.28  Aligned_cols=47  Identities=34%  Similarity=0.508  Sum_probs=38.9

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .++++.+........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus        38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00409       38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            45677777665578899999999999999999999999887765553

>smart00410 IG_like Immunoglobulin like

Probab=98.21  E-value=1e-05  Score=50.28  Aligned_cols=47  Identities=34%  Similarity=0.508  Sum_probs=38.9

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .++++.+........|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus        38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00410       38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            45677777665578899999999999999999999999887765553

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.17  E-value=6.1e-06  Score=54.30  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      +.||.+.. .+....|.|.+++.+|+|.|+|.+.+...
T Consensus        49 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~   86 (95)
T cd05717          49 DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV   86 (95)
T ss_pred             cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC
Confidence            46787743 33456899999999999999999998653

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.16  E-value=4.3e-06  Score=55.70  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=26.1

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      .+.|.|.+|..+|+|.|+|+|.|..|...-
T Consensus        54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y   83 (95)
T cd05897          54 STYLHIIDVSLNDSGYYTCKLQFTHEGKKY   83 (95)
T ss_pred             CCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence            457999999999999999999999876543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.15  E-value=1e-05  Score=53.66  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             CCCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          5 TTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         5 ~~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      .++|+.+... ....+|.|.+++.+|+|.|+|.+.+.-+
T Consensus        48 ~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~   86 (95)
T cd07701          48 RDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV   86 (95)
T ss_pred             cCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC
Confidence            4578877433 4567899999999999999999998533

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>KOG4222|consensus

Probab=98.14  E-value=1.1e-05  Score=72.60  Aligned_cols=45  Identities=33%  Similarity=0.496  Sum_probs=36.0

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP   54 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P   54 (152)
                      +++.+.+.   +.|.|.|+.++|+|+|.|+|.|.+|..++   .+.|..+|
T Consensus       179 ~~~~lisg---G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P  226 (1281)
T KOG4222|consen  179 PIIALISG---GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKP  226 (1281)
T ss_pred             eeEEEecC---CcEEEeccccCCCceeeeeecccccccccccceeeeccCC
Confidence            44555544   47999999999999999999999998887   46666665

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.10  E-value=1.3e-05  Score=52.64  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=29.6

Q ss_pred             cEEEEEcCCEeEEEEcee-----CCCCCEEEEEEEEcC-CCceEE-EEEE
Q psy15979          8 RRIMETRGSRHTLMIRKV-----VASDFGNYSCEATNP-MGKHRA-YLEL   50 (152)
Q Consensus         8 r~~i~~~~~~~~L~I~~v-----~~~D~G~YtC~A~N~-~G~~~~-~~~v   50 (152)
                      ++.+..+   +.|.|.++     .++|+|.|+|.|.|. +|...+ .+.|
T Consensus        47 ~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l   93 (95)
T cd05722          47 RRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARL   93 (95)
T ss_pred             ceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEE
Confidence            3555433   35778777     589999999999999 998855 4444

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.10  E-value=8e-06  Score=53.76  Aligned_cols=42  Identities=31%  Similarity=0.487  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE-cCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~~~v~   51 (152)
                      ++|+.+.    .+.|.|.+++++|+|.|+|.|. |..|.....++|.
T Consensus        45 ~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~   87 (91)
T cd05871          45 EERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLH   87 (91)
T ss_pred             cccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEE
Confidence            4566653    2459999999999999999998 5777777666554

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.10  E-value=1.1e-05  Score=54.15  Aligned_cols=45  Identities=27%  Similarity=0.449  Sum_probs=37.2

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~   51 (152)
                      +|..+.+ .-.+.+|.|.|++.+|.|.|+|...| +.|..++.+.|+
T Consensus        51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~   97 (99)
T cd05886          51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLT   97 (99)
T ss_pred             CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            6777653 33567899999999999999999999 799888877765

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.09  E-value=1.4e-05  Score=52.23  Aligned_cols=26  Identities=35%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             eCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy15979         25 VVASDFGNYSCEATNPMGKHRA-YLEL   50 (152)
Q Consensus        25 v~~~D~G~YtC~A~N~~G~~~~-~~~v   50 (152)
                      +..+|+|.|+|+|+|.+|.+.+ .+.|
T Consensus        71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l   97 (100)
T cd07693          71 KGRSDEGVYVCVAHNSLGEAVSRNASL   97 (100)
T ss_pred             CCcCcCEEEEEEEEccccceecceEEE
Confidence            3689999999999999999543 4443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.07  E-value=7.5e-05  Score=60.02  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +..|.|.++..+|+|.|+|+|.|..|....++.|+
T Consensus        81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~  115 (326)
T PHA02785         81 GSNMLILNPTQSDSGIYICITKNETYCDMMSLNLT  115 (326)
T ss_pred             CceEEEcccCcccCeEEEEEEECCCcceEEEEEEE
Confidence            34588999999999999999999999877765554

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.06  E-value=1e-05  Score=54.18  Aligned_cols=45  Identities=20%  Similarity=0.448  Sum_probs=36.7

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|+.+.. .....+|.|.+++.+|+|.|.|.+.|..|..+..+.|.
T Consensus        56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~  101 (106)
T cd05877          56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALR  101 (106)
T ss_pred             CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEE
Confidence            5676642 23467899999999999999999999999888877654

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.03  E-value=5.6e-06  Score=55.02  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=28.0

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (152)
                      ......|+|.+++.+|+|.|.|.++|..+..+
T Consensus        61 ~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~   92 (94)
T cd07690          61 DQGSFPLIIKNLKIEDSDTYICEVEDKKEEVE   92 (94)
T ss_pred             CCCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence            44566799999999999999999999988765

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.03  E-value=2e-05  Score=52.65  Aligned_cols=45  Identities=33%  Similarity=0.526  Sum_probs=35.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~   51 (152)
                      +|..+..  .....+|+|.|++.+|+|.|.|...| +.|..++.+.|.
T Consensus        51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~   98 (100)
T cd05888          51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLT   98 (100)
T ss_pred             CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEE
Confidence            5666753  33577899999999999999999999 788777766654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.02  E-value=8.1e-06  Score=54.38  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCE-EEEEEEEcCCCce
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKH   44 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~   44 (152)
                      |..++|+.+..   .+.|.|.+|+.+|+| +|.|.|+|.+...
T Consensus        46 i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          46 ITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             ccccccEEECC---CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            45678887753   368999999999999 8999999987544

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.01  E-value=5e-06  Score=54.48  Aligned_cols=36  Identities=22%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             cccCC-CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          2 RLETT-ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         2 ~l~~~-~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      +|..+ .|+.+. +   ..|.|.|++.+|+|.|+|.|.+.-
T Consensus        35 ~i~~~~~r~~~~-~---~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          35 VLTPESAKYLLY-R---DGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ECCCCCceEEEE-C---CcEEEeCCCHHHCEEEEEEEEecc
Confidence            45454 567664 2   369999999999999999999863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.99  E-value=9.2e-06  Score=47.78  Aligned_cols=27  Identities=44%  Similarity=0.689  Sum_probs=24.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ....|.|.+++.+|+|.|+|.+.|..|
T Consensus        37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       37 SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            456899999999999999999999876

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.99  E-value=2.9e-05  Score=51.00  Aligned_cols=45  Identities=27%  Similarity=0.415  Sum_probs=34.5

Q ss_pred             CcEEEEEcC-CEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979          7 ERRIMETRG-SRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~   51 (152)
                      .|..+.... ...+|+|.+++.+|+|.|.|.+.+ ..|+.+..+.|.
T Consensus        50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~   96 (98)
T cd05718          50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLT   96 (98)
T ss_pred             ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEE
Confidence            455544221 567899999999999999999875 788888877664

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.93  E-value=2.7e-05  Score=51.80  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             CCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         5 ~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .++||.+.. .+...+|.|.+++.+|+|.|.|.+..
T Consensus        48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881          48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            578998876 56677899999999999999999875

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.92  E-value=2.4e-05  Score=52.45  Aligned_cols=38  Identities=24%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .....+|+|.+++.+|+|.|.|.+.|..+..+..+.|.
T Consensus        64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~  101 (106)
T cd05714          64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELE  101 (106)
T ss_pred             CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEE
Confidence            34678899999999999999999999888777766554

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.92  E-value=2.9e-05  Score=53.22  Aligned_cols=45  Identities=24%  Similarity=0.389  Sum_probs=35.7

Q ss_pred             CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|+.+..   ...+.+|+|.+++.+|+|.|.|...+.+......+.|.
T Consensus        60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~  107 (112)
T cd05900          60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQ  107 (112)
T ss_pred             CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEE
Confidence            4777754   44678999999999999999999998877666655443

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.90  E-value=2.4e-05  Score=50.41  Aligned_cols=29  Identities=28%  Similarity=0.473  Sum_probs=25.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ..+.|.|.++  .|.|.|.|+|+|.+|...+
T Consensus        47 ~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          47 SPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            4568999998  4889999999999998776

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.86  E-value=5e-05  Score=50.64  Aligned_cols=45  Identities=27%  Similarity=0.409  Sum_probs=35.9

Q ss_pred             CcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEE-cCCCceEEEEEEe
Q psy15979          7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~~~v~   51 (152)
                      +|..+. ....+.+|.|.||+.+|.|.|+|... .+.|+.++++.|.
T Consensus        48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~   94 (96)
T cd05887          48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVT   94 (96)
T ss_pred             CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEE
Confidence            566664 23457899999999999999999864 5899999887664

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.83  E-value=6.4e-05  Score=50.89  Aligned_cols=42  Identities=21%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC-CceEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLEL   50 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~v   50 (152)
                      .+|..+..+   ++|.|++++.+|+|.|+|.+.|.- ...+..++|
T Consensus        61 ~gR~~~~~n---gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          61 SGRETIYPN---GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             CCcEEEeCC---CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence            467777543   489999999999999999999977 455555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.83  E-value=7.2e-05  Score=49.85  Aligned_cols=45  Identities=20%  Similarity=0.374  Sum_probs=36.7

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~   51 (152)
                      +|..+.. ...+.+|.|.||+.+|.|.|+|...+ +.|..++.+.|.
T Consensus        48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            5777653 23568999999999999999998888 599999888764

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>KOG4194|consensus

Probab=97.80  E-value=0.00015  Score=62.27  Aligned_cols=106  Identities=17%  Similarity=0.251  Sum_probs=63.2

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEecCCCCceeecCCCC---CCCCeEEEEEEecCCCCcceEEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQG---RLPNSYNITWMVSSYTPLEEFKIKYR   91 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~~P~p~~~~~~~~~---~~~~~~~L~W~~~~~~pi~~y~~~~r   91 (152)
                      ..+.|.+.||...|+|.|.|++.|.+|+.-+ ..+++..-.| .|...|..   ..+....|.|.+.|.+ -.+..|+. 
T Consensus       572 ~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~P-sFtktP~dltl~tg~mArl~CaAtG~P-~PeIawqk-  648 (873)
T KOG4194|consen  572 YTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAP-SFTKTPEDLTLRTGQMARLECAATGHP-RPEIAWQK-  648 (873)
T ss_pred             hhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccC-ccccCcccceeecccceeeeeeccCCC-Ccceeehh-
Confidence            4567999999999999999999999998876 3444432222 22222211   1245566777665543 11222222 


Q ss_pred             ECCCCC------------CCc-----ceEEecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         92 KIPGNE------------PSP-----MSNQLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        92 ~~~~~~------------~~~-----~~~~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                       .+..+            +.+     ....+++.+.|.|  .|.|..|.-...
T Consensus       649 -dggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC--~A~n~AG~isan  698 (873)
T KOG4194|consen  649 -DGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTC--TAQNVAGQISAN  698 (873)
T ss_pred             -cCCCCCchhhhheeeecCCCCEEEEecccccccceeEE--eeeccccceeec
Confidence             21111            122     1224566899999  899999865433

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.77  E-value=6.5e-05  Score=51.09  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=33.1

Q ss_pred             CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus         7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      +|+.+.+   .....+|+|.+++.+|+|.|.|......+..+..+.|
T Consensus        58 gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l  104 (110)
T cd05878          58 GRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPL  104 (110)
T ss_pred             CeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEE
Confidence            5777642   2356789999999999999999998875555555444

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.72  E-value=3.7e-05  Score=49.60  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=26.3

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ...|.|.+++.+|+|.|+|.|.|..|...+
T Consensus        47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s   76 (83)
T cd05753          47 NSNLSIPQATLSDSGSYHCSGIIGSYDYSS   76 (83)
T ss_pred             CceEEECccCHHHCEEEEEEEEeCCceecC
Confidence            467999999999999999999999985443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.71  E-value=3.2e-05  Score=47.43  Aligned_cols=26  Identities=46%  Similarity=0.673  Sum_probs=23.3

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ....+.|.|.++..+|.|.|+|+|+|
T Consensus        50 ~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   50 SSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             cceeeEEEEccCCHHhCcEEEEEEEC
Confidence            34567899999999999999999998

...

>KOG0196|consensus

Probab=97.70  E-value=0.00068  Score=59.90  Aligned_cols=113  Identities=15%  Similarity=0.226  Sum_probs=71.9

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCce------EEEEEEe-cCCCC-ceeecCCCCCCCCeEEEEEEecC--CCCcceEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELS-GKPNP-AIFRSHPQGRLPNSYNITWMVSS--YTPLEEFK   87 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~~~v~-~~P~p-~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~   87 (152)
                      ..+.|.++...---.+...|.|.+-.-      .+.+.++ ....| +...........+++.|+|..+.  ...|+.|.
T Consensus       398 ~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYE  477 (996)
T KOG0196|consen  398 TSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYE  477 (996)
T ss_pred             ceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEE
Confidence            457777777666566667788865422      1224443 11112 11111112345799999999753  34689999


Q ss_pred             EEEEECCCCCCC-------c---ceEEecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         88 IKYRKIPGNEPS-------P---MSNQLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        88 ~~~r~~~~~~~~-------~---~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      +.|.+...++..       .   ....|.+++.|.|+|+|+...|.|..+...
T Consensus       478 vky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~  530 (996)
T KOG0196|consen  478 VKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKH  530 (996)
T ss_pred             EEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCce
Confidence            999988644311       1   123577799999999999999999887644

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.69  E-value=0.00015  Score=46.92  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (152)
                      +|+.+..+   .+|.|.+++.+|+|.|+|...+..|...
T Consensus        49 ~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~~~~~~~~   84 (92)
T cd05741          49 GRETIYPN---GSLLIQNLTKEDSGTYTLQIISTNGVTE   84 (92)
T ss_pred             CeEEEcCC---ceEEEccCCchhcEEEEEEEEcCCCcEE
Confidence            56666432   6899999999999999999998875443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.69  E-value=5.7e-05  Score=49.00  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=26.1

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCC-CceEEEEEEe
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS   51 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~v~   51 (152)
                      .|.|.+++.+|+|.|+|.|.|.. +....++.|.
T Consensus        52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~   85 (89)
T cd04979          52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLN   85 (89)
T ss_pred             CEEEccCCHHHCEEEEEEEecCccceeEeEEEEE
Confidence            49999999999999999999764 4444455554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=97.68  E-value=6.7e-05  Score=57.52  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=31.3

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      +|..++|+++..  +++.|.|.+|+.+|+|.|+|+|+...+
T Consensus       174 ~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~~  212 (227)
T PHA02826        174 IVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNKN  212 (227)
T ss_pred             ECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence            455667777653  346899999999999999999999753

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.68  E-value=0.00012  Score=48.61  Aligned_cols=38  Identities=24%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +|+.+  .....+|+|.+++.+|+|.|.|...+..|....
T Consensus        52 ~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~   89 (97)
T cd05775          52 ERVNF--SQNDYSLQISNLKMEDAGSYRAEINTKNGVTIT   89 (97)
T ss_pred             eeEEe--cCCceeEEECCCchHHCEEEEEEEEcCCCCeEE
Confidence            35555  344678999999999999999999998876543

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.68  E-value=8.4e-05  Score=49.75  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             CCCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          5 TTERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         5 ~~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ..+|+.+...  .....|.|.+++.+|+|.|.|.+.+..|
T Consensus        55 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          55 EKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             cCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            3578877543  3678899999999999999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.66  E-value=7.2e-05  Score=49.53  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             CCcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         6 ~~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      .+|+.+....  ...+|+|.+++.+|+|.|.|.+.+..+
T Consensus        53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            4677776443  677899999999999999999998776

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.63  E-value=0.00012  Score=49.20  Aligned_cols=37  Identities=11%  Similarity=0.149  Sum_probs=33.3

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ..+.|.+..++.+|+|.|||.|.|..+.++.++.|..
T Consensus        63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v   99 (101)
T cd05860          63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYV   99 (101)
T ss_pred             EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEE
Confidence            4578999999999999999999999999999877753

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.61  E-value=5.1e-05  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.596  Sum_probs=21.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      ..+.|.|.++ .+|+|.|+|.|.|.
T Consensus        45 ~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          45 TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             cCCeEEEeec-ccCCEEeEEECCCC
Confidence            4568999999 99999999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.60  E-value=0.00016  Score=48.85  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...|.|.++..+|+|.|+|++.|.-...+..+.|+
T Consensus        69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          69 EDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             CCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence            45799999999999999999999988877776654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.53  E-value=0.00013  Score=43.92  Aligned_cols=18  Identities=39%  Similarity=0.739  Sum_probs=17.5

Q ss_pred             EEEceeCCCCCEEEEEEE
Q psy15979         20 LMIRKVVASDFGNYSCEA   37 (152)
Q Consensus        20 L~I~~v~~~D~G~YtC~A   37 (152)
                      |.|.+++.+|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.49  E-value=0.0004  Score=47.34  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=27.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      +|+.+..  ..+..+|+|.+++.+|+|.|.|.+.|.-+.
T Consensus        67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence            3444532  234578999999999999999999986543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.48  E-value=0.00024  Score=48.95  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=29.4

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      +|+.+..  ...+.+|.|.|++.+|.|.|+|.+.|.-+
T Consensus        67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence            4777642  23567899999999999999999999755

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.45  E-value=0.00024  Score=46.91  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=30.0

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+...+....|+|.+++.+|+|.|.|.+.+.
T Consensus        51 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          51 PDRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CCCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence            46888877767888999999999999999988763

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.44  E-value=0.00057  Score=47.18  Aligned_cols=45  Identities=27%  Similarity=0.389  Sum_probs=35.2

Q ss_pred             CcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.+.   .++-+|.|.+++.+|+|.|.|...+.....+..+.|.
T Consensus        65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~  112 (117)
T cd05901          65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD  112 (117)
T ss_pred             CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence            46666432   2468899999999999999999999888777765554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.43  E-value=0.00036  Score=47.62  Aligned_cols=45  Identities=20%  Similarity=0.328  Sum_probs=34.3

Q ss_pred             CcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+..+   ...-+|.|.||+.+|+|.|.|.........+..++|.
T Consensus        58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~  105 (110)
T cd05902          58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLE  105 (110)
T ss_pred             cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEE
Confidence            56777542   2567899999999999999999998765566655543

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.42  E-value=0.00018  Score=46.94  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +|..|+|+.....+    |.|.+++.+|+|.|.|.|. +.|-...
T Consensus        35 ~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~   74 (85)
T cd05872          35 PLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQL   74 (85)
T ss_pred             ccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence            46677888876554    8899999999999999887 5564444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.36  E-value=0.00031  Score=47.36  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ++|+.+... .....|.|.+++.+|+|.|.|.+.+..|
T Consensus        59 ~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          59 KDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGGG   96 (110)
T ss_pred             CCceEEECcCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence            467776533 2567899999999999999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.35  E-value=0.00027  Score=47.35  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      +|+.+...+....|.|.+++.+|+|.|.|.+.|.
T Consensus        60 ~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          60 SRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            5777765556778999999999999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.34  E-value=0.00041  Score=45.80  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             CcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979          7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~   51 (152)
                      +|+.+. ......+|+|.+++.+|+|.|.|...+ +.|.....+.|+
T Consensus        49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~   95 (97)
T cd05846          49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLT   95 (97)
T ss_pred             CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEE
Confidence            344443 344678899999999999999998764 677766655554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.33  E-value=0.00028  Score=48.28  Aligned_cols=29  Identities=24%  Similarity=0.571  Sum_probs=25.3

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      ....+|.|.+++.+|+|.|.|.+.|.-+.
T Consensus        76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          76 RRDASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            35678999999999999999999997664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.29  E-value=0.00073  Score=44.67  Aligned_cols=35  Identities=23%  Similarity=0.454  Sum_probs=28.5

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.....
T Consensus        65 ~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   65 SGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             TTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred             eeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence            356666543  35788999999999999999999887

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>smart00406 IGv Immunoglobulin V-Type

Probab=97.20  E-value=0.00043  Score=43.19  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=26.3

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (152)
                      .+|+.+...  .+..+|.|.+++.+|+|.|.|.
T Consensus        48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            468877654  6778899999999999999995

>PHA02633 hypothetical protein; Provisional

Probab=97.18  E-value=0.00095  Score=40.74  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=31.7

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      +...|-|.++..+|+|.|.|+..|.-=..+.++.|+.-
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            55679999999999999999999987777777776643

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.17  E-value=0.00072  Score=45.85  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             CCcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ..|+.+....  ....|+|.+++.+|+|.|.|.+..
T Consensus        63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence            4688876544  678899999999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.02  E-value=0.00087  Score=44.94  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ..|+.+........|+|.+++.+|+|.|.|...+
T Consensus        57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            4577776656778899999999999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.01  E-value=0.00076  Score=41.81  Aligned_cols=31  Identities=35%  Similarity=0.646  Sum_probs=24.4

Q ss_pred             EEEceeCCCCCEEEEEEEEcCCCc-eEEEEEE
Q psy15979         20 LMIRKVVASDFGNYSCEATNPMGK-HRAYLEL   50 (152)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~-~~~~~~v   50 (152)
                      |.|.++..+|.|.|+|.|.|..|. ....+.|
T Consensus        47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen   47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             EEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            788999999999999999996653 3334544

...

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=96.93  E-value=0.0094  Score=36.76  Aligned_cols=61  Identities=16%  Similarity=0.281  Sum_probs=43.4

Q ss_pred             CCeEEEEEEecCC--CCcceEEEEEEECCCCC-----C---CcceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         68 PNSYNITWMVSSY--TPLEEFKIKYRKIPGNE-----P---SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        68 ~~~~~L~W~~~~~--~pi~~y~~~~r~~~~~~-----~---~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ..++.+.|.....  ..+..|.+++.......     .   ....+   .|.+++.|.|+|.|.+.-|+|.++.
T Consensus        14 ~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~   87 (93)
T cd00063          14 STSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE   87 (93)
T ss_pred             CCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCcc
Confidence            5889999997543  25678999988754222     1   11223   3666999999999999999987765

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.90  E-value=0.0015  Score=44.76  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=27.7

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      +|+.+.  ......+|.|.+++.+|+|.|.|..+..
T Consensus        67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            577774  2456788999999999999999988763

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=96.82  E-value=0.0011  Score=43.21  Aligned_cols=26  Identities=15%  Similarity=0.341  Sum_probs=22.9

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      +....|.|.+|+.+|+|.|+|.+.|.
T Consensus        50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          50 QNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ceeEEEEccCCChhHCEEEEEEEECC
Confidence            34567999999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.81  E-value=0.0017  Score=44.13  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.+..  .....+|+|.+++.+|+|.|.|.+.+
T Consensus        58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence            47888863  34577899999999999999999885

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.79  E-value=0.0018  Score=43.54  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=26.2

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+.  ..+....|+|.+++.+|+|.|.|...+
T Consensus        59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence            577653  344567899999999999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.62  E-value=0.0028  Score=41.56  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=28.8

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      .+|+.+..  ......|+|.+++.+|+|.|.|.+.+..
T Consensus        50 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          50 EGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             CCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence            46777753  3456789999999999999999988754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=96.56  E-value=0.003  Score=40.65  Aligned_cols=28  Identities=25%  Similarity=0.221  Sum_probs=25.1

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKH   44 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (152)
                      .++|.|.....+|.+.|+|.|.|.++..
T Consensus        42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885          42 SNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            4579999999999999999999998864

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PHA03376 BARF1; Provisional

Probab=96.38  E-value=0.0066  Score=45.37  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      -.|+.|.++.++-+|.|.+++.+|.|.|+|+.+-.
T Consensus        75 RGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkg  109 (221)
T PHA03376         75 RGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLG  109 (221)
T ss_pred             ccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcC
Confidence            35677777778889999999999999999988754

>cd00096 Ig Immunoglobulin domain

Probab=96.32  E-value=0.0089  Score=34.53  Aligned_cols=29  Identities=38%  Similarity=0.636  Sum_probs=24.6

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      .....|.|.+++.+|.|.|+|.+.+..+.
T Consensus        40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   68 (74)
T cd00096          40 SGSSTLTISNVTLEDSGTYTCVASNSAGT   68 (74)
T ss_pred             eeEEEEEECccCcccCcEEEEEEecCcCc
Confidence            34567999999999999999999987643

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.10  E-value=0.0057  Score=45.43  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=30.5

Q ss_pred             CcEEE-EEcCCEeEEEEceeCCCCCEEEEEEEEc-CCC-ceEEE
Q psy15979          7 ERRIM-ETRGSRHTLMIRKVVASDFGNYSCEATN-PMG-KHRAY   47 (152)
Q Consensus         7 ~r~~i-~~~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G-~~~~~   47 (152)
                      +|+.+ ...-..+.|+|.+|+.+|+|.|+|...- +.| ..+..
T Consensus        73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt  116 (189)
T PHA02987         73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGV  116 (189)
T ss_pred             CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeE
Confidence            47774 4455678999999999999999997654 456 44444

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=95.95  E-value=0.012  Score=37.29  Aligned_cols=26  Identities=23%  Similarity=0.183  Sum_probs=21.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      .+.|.|.....+|.|.|+|+|+|..-
T Consensus        45 ~s~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759          45 VSTLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             EEEEEEeCceecCCCEEEEEEcCccC
Confidence            35788888888899999999999653

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.71  E-value=0.013  Score=45.70  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      +|....++.|+.+|   .|.|.+.+++++|.|+|..+=..
T Consensus        24 ~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   24 PLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             ccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence            35556677887554   69999999999999999877543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=95.61  E-value=0.014  Score=39.86  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=26.3

Q ss_pred             CcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+....  ....|+|.+++.+|+|.|-|.+..
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            577776432  445799999999999999998875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>smart00060 FN3 Fibronectin type 3 domain

Probab=95.44  E-value=0.071  Score=31.61  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             CCeEEEEEEecCCCCcceEEEEEEECCCC---C-------CCcceE---EecCCCeEEEEEEEEcCCCCC
Q psy15979         68 PNSYNITWMVSSYTPLEEFKIKYRKIPGN---E-------PSPMSN---QLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        68 ~~~~~L~W~~~~~~pi~~y~~~~r~~~~~---~-------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..++.++|..+.......|.+.|......   .       .....+   .|.+++.|.|+|.|.|..|.+
T Consensus        14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~~   83 (83)
T smart00060       14 STSVTLSWEPPPDDGITGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG   83 (83)
T ss_pred             CCEEEEEECCCCCCCCCccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccCCC
Confidence            35889999854322114566666543211   0       111223   466689999999999986653

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=94.94  E-value=0.11  Score=34.08  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=21.7

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+..+|.+..+...|+|.|+|...-
T Consensus        48 ~~~ktL~~~qv~~qdSG~WtC~V~~   72 (88)
T cd07694          48 QDKKTLNLVQLGPNDSGTWDCIVSV   72 (88)
T ss_pred             CCccEEEeceeCcccCCEEEEEEEE
Confidence            3567899999999999999998863

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG4367|consensus

Probab=94.54  E-value=0.036  Score=46.18  Aligned_cols=79  Identities=14%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCC-----CCc-ceEEecC---CCeEEEEEEEEcCCC
Q psy15979         54 PNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE-----PSP-MSNQLTG---TNQYQNRRLVRKRFD  122 (152)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~-----~~~-~~~~L~~---~~~Y~~rV~A~N~~G  122 (152)
                      |..|++.........++++|.|..+  +..|..+|.++.-.-+.+.     .+. .--++.+   ++.|..||.|.|+.|
T Consensus       438 patpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n~tg  517 (699)
T KOG4367|consen  438 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTG  517 (699)
T ss_pred             CCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhhccC
Confidence            3444444434444568999999954  4568899999875543332     111 2235555   899999999999999


Q ss_pred             CCCCCCCccc
Q psy15979        123 RGNSTNGGLI  132 (152)
Q Consensus       123 ~g~~s~~~~~  132 (152)
                      .++.+....+
T Consensus       518 ~s~ys~tl~l  527 (699)
T KOG4367|consen  518 VSPYSKTLVL  527 (699)
T ss_pred             CCcccceeEe
Confidence            9998876633

>PHA02982 hypothetical protein; Provisional

Probab=94.40  E-value=0.069  Score=40.52  Aligned_cols=40  Identities=23%  Similarity=0.548  Sum_probs=35.0

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.|.+.-.++.++|+|.++..+..|-|+|+|....|..+.
T Consensus        89 d~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~  128 (251)
T PHA02982         89 DKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEET  128 (251)
T ss_pred             eeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchhe
Confidence            5566777889999999999999999999999988877665

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=93.85  E-value=0.63  Score=30.93  Aligned_cols=16  Identities=19%  Similarity=0.422  Sum_probs=13.3

Q ss_pred             CCeEEEEEEEEcCCCCCC
Q psy15979        108 TNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus       108 ~~~Y~~rV~A~N~~G~g~  125 (152)
                      .+.|.|  .|.|.||...
T Consensus        77 ~g~Y~C--~a~N~~G~d~   92 (98)
T cd05898          77 QTHYNC--TAWNSFGSGT   92 (98)
T ss_pred             CcEEEE--EEEeCCccce
Confidence            468998  8899999874

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=93.23  E-value=0.12  Score=33.79  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      ...+.|.+++.+|+|.|.|...
T Consensus        54 ~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          54 QASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEEecCCCcccCEEEEEEEE
Confidence            4468999999999999999875

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00098 IgC Immunoglobulin Constant domain

Probab=93.13  E-value=0.19  Score=32.25  Aligned_cols=26  Identities=15%  Similarity=0.138  Sum_probs=19.8

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      +.|.|......|.|.|+|+|.|....
T Consensus        62 s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          62 SQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             EEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            35666666667999999999997543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=92.59  E-value=0.89  Score=28.21  Aligned_cols=24  Identities=8%  Similarity=0.026  Sum_probs=19.1

Q ss_pred             CCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979        108 TNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus       108 ~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      .+.|.|  .|.|.+|....+++..++
T Consensus        54 ~G~Y~C--~a~N~~G~~~~~~~~~~~   77 (78)
T cd05743          54 QGAYTC--EAINTRGMVFGIPDGILT   77 (78)
T ss_pred             CEEEEE--EEEecCCEEEecccEEEE
Confidence            789998  789999988777766543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=91.99  E-value=0.77  Score=29.20  Aligned_cols=19  Identities=11%  Similarity=0.048  Sum_probs=14.5

Q ss_pred             cCCCeEEEEEEEEcCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .+.+.|+|  .|+|.+|...+
T Consensus        57 ~d~g~Y~C--~A~N~~G~~~s   75 (81)
T cd05749          57 NETSKFSC--EAHNAKGVTTS   75 (81)
T ss_pred             cCCeEEEE--EEEeccCcEEe
Confidence            34678999  89999996543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=91.35  E-value=0.49  Score=32.09  Aligned_cols=39  Identities=28%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      .+|+.+..+  +-.|.|+.++++|+|.|.-...|.-|....
T Consensus        61 n~r~~F~~e--nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~   99 (108)
T PF11465_consen   61 NNRFNFTSE--NLALLIKAAQPQDSGLYCLEVTNESGKVCT   99 (108)
T ss_dssp             HHHEEEETT--TTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred             cceEeeecc--CceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence            367777643  458999999999999999999999998865

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=91.16  E-value=2.4  Score=28.19  Aligned_cols=51  Identities=18%  Similarity=0.248  Sum_probs=34.3

Q ss_pred             CeEEEEEEec-CCCCcceEEEEEEECCCCCCCc---------ceEEecC-----CCeEEEEEEEEc
Q psy15979         69 NSYNITWMVS-SYTPLEEFKIKYRKIPGNEPSP---------MSNQLTG-----TNQYQNRRLVRK  119 (152)
Q Consensus        69 ~~~~L~W~~~-~~~pi~~y~~~~r~~~~~~~~~---------~~~~L~~-----~~~Y~~rV~A~N  119 (152)
                      -...|.|..+ +.++-..|+++|+......+..         ..-.|+.     ...|.+||+|.-
T Consensus        35 f~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~  100 (107)
T PF01108_consen   35 FKHILRWDPGPGSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEV  100 (107)
T ss_dssp             TEEEEEEEESTTSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEE
T ss_pred             CceEEEeCCCCCCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEe
Confidence            4578999984 3456678999999544443221         2334544     678999999974

...

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=89.72  E-value=2.3  Score=27.07  Aligned_cols=19  Identities=5%  Similarity=0.080  Sum_probs=15.0

Q ss_pred             CCCeEEEEEEEEcCCCCCCCC
Q psy15979        107 GTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       107 ~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      +.+.|+|  .|.|.+|....+
T Consensus        64 D~G~Y~C--~A~N~~G~~~~~   82 (88)
T cd05851          64 DEGTYEC--EAENIKGKDKHQ   82 (88)
T ss_pred             hCEEEEE--EEEcCCCceEEE
Confidence            3788998  789999986544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=89.50  E-value=1.2  Score=28.03  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=18.7

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      +.|.+.....+|.+.|+|+|.|....
T Consensus        45 s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761          45 SSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEcchhhCCCEEEEEEeChhcC
Confidence            34666555556678999999997654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=88.82  E-value=0.36  Score=33.89  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=24.8

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .+|.+...+.- .|+|+|.+.......+..++|..
T Consensus        86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence            34777775544 79999999998888888877753

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=88.79  E-value=0.52  Score=30.36  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      .++|.|..-..+|...|+|+|.|+.
T Consensus        43 ~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883          43 TSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEECchhhCCCEEEEEEcCcc
Confidence            4678898888888899999999965

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>KOG1480|consensus

Probab=88.19  E-value=0.18  Score=44.78  Aligned_cols=41  Identities=37%  Similarity=0.629  Sum_probs=32.2

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.+|+......   .+.|.|..+...|.|+|+|+|.|.++....
T Consensus       171 ~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~~  211 (909)
T KOG1480|consen  171 IDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRKS  211 (909)
T ss_pred             CCccccchhhh---cCCccccchhhhhcccceeeeehhhccccc
Confidence            34455555543   346999999999999999999999997766

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=88.04  E-value=5.1  Score=25.62  Aligned_cols=61  Identities=10%  Similarity=0.077  Sum_probs=35.6

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCC---C----CCcceEEecC-----CCeEEEEEEEEcC-CCCCCCCCCccc
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGN---E----PSPMSNQLTG-----TNQYQNRRLVRKR-FDRGNSTNGGLI  132 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~---~----~~~~~~~L~~-----~~~Y~~rV~A~N~-~G~g~~s~~~~~  132 (152)
                      ..+.++|+|..+  .+...|.+ |+.-...   .    .....+.|.+     ++.|.|+.  +|. ++|+.+|+..-+
T Consensus        15 ~G~~VtL~C~~~--~~~~~f~l-~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~--~~~~~~~S~~Sd~lel   88 (91)
T cd05751          15 LGKPVTLRCQGP--YGAVEYRL-YREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYY--RSGVALWSEPSDPLEL   88 (91)
T ss_pred             CCCcEEEEEecC--CCCCEEEE-EECCCCccccccCCCceeEEEEccCCChhHCEEEEEEE--ECCCCccCCCCCcEEE
Confidence            468999999865  33445554 3331110   0    0112344433     78999966  454 889999886533

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=87.20  E-value=2.4  Score=28.07  Aligned_cols=19  Identities=11%  Similarity=0.065  Sum_probs=14.7

Q ss_pred             cCCCeEEEEEEEEcCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ++.+.|.|  .|.|..|..+.
T Consensus        75 ~D~G~Ytc--~A~N~~G~~~~   93 (101)
T cd04975          75 SEAGTYTF--LASNSDASKSL   93 (101)
T ss_pred             hhCeeEEE--EEECCCccEEE
Confidence            34899988  88999996543

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=87.16  E-value=2.7  Score=26.68  Aligned_cols=21  Identities=5%  Similarity=0.219  Sum_probs=16.3

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .+.+.|.|  .|+|.+|....+.
T Consensus        54 ~D~G~YtC--~A~N~~G~~~~~~   74 (79)
T cd05855          54 LNNGIYTL--VAKNEYGEDEKNV   74 (79)
T ss_pred             ccCEEEEE--EEEcCCcccceEE
Confidence            34889988  8899999765553

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>TIGR00864 PCC polycystin cation channel protein

Probab=87.02  E-value=12  Score=38.47  Aligned_cols=118  Identities=11%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             eCCCCCEEEEE--EEEcCCCceEEEEEEec-CCCCce-eecCC-CCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCC-
Q psy15979         25 VVASDFGNYSC--EATNPMGKHRAYLELSG-KPNPAI-FRSHP-QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP-   98 (152)
Q Consensus        25 v~~~D~G~YtC--~A~N~~G~~~~~~~v~~-~P~p~~-~~~~~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~-   98 (152)
                      +...+.|.|+.  .|.|.+|....+..+.. .|..-. ++..+ .......+++.-....++. ..|.|.+........ 
T Consensus      1664 vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~-vty~W~~gdG~s~~~s 1742 (2740)
T TIGR00864      1664 LNPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSG-LQYRWFLEEGDDLETS 1742 (2740)
T ss_pred             EecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCC-cEEEEEECCCCCcccC
Confidence            34578899955  89999999988643331 122211 11111 1112345555544444433 357776655322111 


Q ss_pred             -CcceEEecCCCeEEEEEEEEcCCCCCCCCCCcccccccccccccchh
Q psy15979         99 -SPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDRI  145 (152)
Q Consensus        99 -~~~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~~~~~~~~~~  145 (152)
                       ...++...-.+.|.+.|.|.|.+|...  .+..|.+-.+.+|-+++-
T Consensus      1743 ~p~~tHtf~~~G~y~VtVta~N~vss~~--~s~~V~VqepV~GL~i~~ 1788 (2740)
T TIGR00864      1743 EPFMSHSFPSAGLHLVTMKAFNELGSAN--ASEEVDVQEPISGLKIRA 1788 (2740)
T ss_pred             CCceEEEccCCceEEEEEEEEccccccc--eeEEEEEEeccccceEec
Confidence             113556666899999999999998654  356666666667776653

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4258|consensus

Probab=86.08  E-value=3.3  Score=37.69  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             CCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC----------cceEEecC--CCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS----------PMSNQLTG--TNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~----------~~~~~L~~--~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ..+++.|+|..+  .+.-|..|.++|+........          .....|..  .+.|.+||+|..-.|.|..+.+..+
T Consensus       841 ~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G~y~~~vratSlaGng~~t~~~~~  920 (1025)
T KOG4258|consen  841 EMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPGNYSVRVRATSLAGNGSWTESVIF  920 (1025)
T ss_pred             CcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCCcEEEEEEEEeeccCCCCcCCcce
Confidence            568999999864  345788999999987654311          12223333  7999999999999999999987754


Q ss_pred             cc
Q psy15979        133 VP  134 (152)
Q Consensus       133 ~~  134 (152)
                      ..
T Consensus       921 ~v  922 (1025)
T KOG4258|consen  921 YV  922 (1025)
T ss_pred             EE
Confidence            33

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=85.72  E-value=2.6  Score=26.64  Aligned_cols=21  Identities=5%  Similarity=0.259  Sum_probs=16.2

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .+.+.|.|  .|.|.+|.-..+.
T Consensus        56 ~D~G~YtC--~A~N~~G~~~~~~   76 (81)
T cd04971          56 VNNGNYTL--VASNEYGQDSKSI   76 (81)
T ss_pred             ccCeEEEE--EEEeCCCCeeeEE
Confidence            34889988  8899999865543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=85.60  E-value=3.3  Score=25.65  Aligned_cols=20  Identities=10%  Similarity=0.227  Sum_probs=15.3

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ++.+.|.|  .|.|.+|.....
T Consensus        61 ~D~G~Y~C--~a~N~~G~~~s~   80 (86)
T cd05724          61 SDEGTYKC--VATNMVGERESA   80 (86)
T ss_pred             ccCEEEEE--EEEeccCceeee
Confidence            33789998  789999976544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=85.55  E-value=3.6  Score=26.53  Aligned_cols=19  Identities=26%  Similarity=0.226  Sum_probs=14.9

Q ss_pred             cCCCeEEEEEEEEcCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .+.+.|+|  .|.|.+|...+
T Consensus        69 ~D~G~Y~C--~A~N~~G~~~s   87 (94)
T cd05850          69 RDAGSYQC--LAINRCGTVVS   87 (94)
T ss_pred             CcCEEEEE--EEEcCcCcEEE
Confidence            34888998  88999997644

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=85.46  E-value=5.2  Score=25.21  Aligned_cols=23  Identities=13%  Similarity=0.227  Sum_probs=17.2

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      .+.+.|.|  .|.|.+|...+....
T Consensus        74 ~D~G~Y~C--~a~N~~G~~~s~~~~   96 (100)
T cd07693          74 SDEGVYVC--VAHNSLGEAVSRNAS   96 (100)
T ss_pred             CcCEEEEE--EEEccccceecceEE
Confidence            45889998  789999986555443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>KOG3515|consensus

Probab=85.44  E-value=2.3  Score=38.12  Aligned_cols=74  Identities=26%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceee-cCC-CCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR-SHP-QGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~-~~~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .+.+.+|.+.|.|.|.|.|.|..|.+...+.+...-.|.... ..+ .....+++.+.+..+...--..+.-|+|.
T Consensus       459 ~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~  534 (741)
T KOG3515|consen  459 LGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRS  534 (741)
T ss_pred             ccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhccccc
Confidence            445778999999999999999999999987754332232211 111 23345675555554433222233444443

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=85.40  E-value=6.7  Score=24.92  Aligned_cols=21  Identities=0%  Similarity=0.047  Sum_probs=16.6

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .++.+.|.|  .|.|.+|....+
T Consensus        56 ~~D~G~YtC--~A~N~~G~~~~~   76 (88)
T cd05735          56 REDSGFFSC--HAINSYGEDRGI   76 (88)
T ss_pred             cccCEEEEE--EEEcCCCcceEE
Confidence            345889999  889999987544

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=85.35  E-value=2.3  Score=25.84  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=15.5

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+.+.|+|  .|.|.+|....+
T Consensus        49 ~D~G~Y~C--~a~N~~G~~~~~   68 (73)
T cd04969          49 SDEGKYTC--FAENFFGKANST   68 (73)
T ss_pred             hHCEEEEE--EEECCCCceEEE
Confidence            34789988  889999987544

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=85.23  E-value=4.8  Score=25.63  Aligned_cols=21  Identities=10%  Similarity=0.281  Sum_probs=16.9

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .++.+.|.|  .|.|.+|....+
T Consensus        64 ~~D~G~Y~C--~A~N~~G~~~~s   84 (90)
T cd04974          64 FDDAGEYTC--LAGNSIGPSHHS   84 (90)
T ss_pred             cccCcEEEE--EeecccCcccCC
Confidence            455999999  889999986544

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=85.07  E-value=5  Score=24.36  Aligned_cols=18  Identities=11%  Similarity=0.124  Sum_probs=14.3

Q ss_pred             CCCeEEEEEEEEcCCCCCCC
Q psy15979        107 GTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       107 ~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      +.+.|+|  .|.|.+|.-..
T Consensus        51 D~G~Y~C--~A~N~~G~~~~   68 (74)
T cd05745          51 DQGQYEC--QAVNIVGSQRT   68 (74)
T ss_pred             hCEEEEE--EEEeCCCceeE
Confidence            3789988  88999997643

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=84.29  E-value=1.3  Score=27.64  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.2

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +.+|.+-.+..+-.|.|.|.++|
T Consensus        32 ~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691          32 NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ccEEeccCcccCCCcceEecCcc
Confidence            46788888889999999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=83.91  E-value=1.6  Score=29.17  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=19.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      ...+|+|.--..+|.-+|+|+|++.++.
T Consensus        60 ~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          60 APATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             eEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            3556777655445555999999997754

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=83.76  E-value=4.9  Score=25.84  Aligned_cols=17  Identities=18%  Similarity=0.180  Sum_probs=14.0

Q ss_pred             CCCeEEEEEEEEcCCCCCC
Q psy15979        107 GTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus       107 ~~~~Y~~rV~A~N~~G~g~  125 (152)
                      +.+.|+|  .|.|.+|...
T Consensus        66 D~G~Y~C--~a~N~~G~~~   82 (91)
T cd05740          66 DTGHYQC--EASNEVSNMT   82 (91)
T ss_pred             hCEEEEE--EEEcCCCCEE
Confidence            3899998  8899999753

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=83.04  E-value=8  Score=23.31  Aligned_cols=17  Identities=6%  Similarity=0.198  Sum_probs=13.3

Q ss_pred             cCCCeEEEEEEEEcCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .+.+.|.|  .|.|.+|.-
T Consensus        50 ~D~G~Y~C--~a~N~~G~~   66 (74)
T cd05748          50 SDSGKYTL--TLKNPAGEK   66 (74)
T ss_pred             CcCEEEEE--EEECCCccE
Confidence            34788988  889999864

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=82.65  E-value=8.9  Score=24.44  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             EEEEceeCCCCCEEEEEEE-EcCCCceEEEEE
Q psy15979         19 TLMIRKVVASDFGNYSCEA-TNPMGKHRAYLE   49 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A-~N~~G~~~~~~~   49 (152)
                      .+.......+|+|.++|.| .|..=..+..+.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~   75 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIE   75 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEE
Confidence            4566677789999999999 555544444433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>TIGR00864 PCC polycystin cation channel protein

Probab=82.55  E-value=25  Score=36.24  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=63.4

Q ss_pred             CCCEEEEE--EEEcCCCceEEEEEEecCCCCceeec-CCCCCCCCeEEEEEEe--cCCCCcceEEEEEEECCCCCC--Cc
Q psy15979         28 SDFGNYSC--EATNPMGKHRAYLELSGKPNPAIFRS-HPQGRLPNSYNITWMV--SSYTPLEEFKIKYRKIPGNEP--SP  100 (152)
Q Consensus        28 ~D~G~YtC--~A~N~~G~~~~~~~v~~~P~p~~~~~-~~~~~~~~~~~L~W~~--~~~~pi~~y~~~~r~~~~~~~--~~  100 (152)
                      ...|.|+.  .|.|..|....++.+.+......+.. ...........+.+..  ..+. ...|.|.+..-.....  ..
T Consensus      1481 ~~~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~v~ysWdFGDg~ts~~~npt 1559 (2740)
T TIGR00864      1481 NSPGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-DVRFSWILCDHCTPIFGGNT 1559 (2740)
T ss_pred             CCCceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-ceeEEEEeCCCCccccCCCc
Confidence            45799976  68999999888766654322111211 1111111221344443  2333 4568887754322111  12


Q ss_pred             ceEEecCCCeEEEEEEEEcCCCCCCCCCCcccccccccccccch
Q psy15979        101 MSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQDR  144 (152)
Q Consensus       101 ~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~~~~~~~~~  144 (152)
                      ..|.....+.|.++|.|.|..|...-+  ..+.+....+|-|+.
T Consensus      1560 ~~yTY~spGtYtVtLTvtN~~Gs~~~T--~~i~V~~~I~GlqI~ 1601 (2740)
T TIGR00864      1560 IFYTFRSVGTFNIIVTAENDVGAAQAS--IFLFVLQEIEGLQIL 1601 (2740)
T ss_pred             eEEeecCCceEEEEEEEecCCCcccee--EEEEEeecccceEEE
Confidence            457777789999999999999987444  333333334454443

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4802|consensus

Probab=82.49  E-value=3.3  Score=34.69  Aligned_cols=25  Identities=8%  Similarity=0.143  Sum_probs=19.9

Q ss_pred             EecCCCeEEEEEEEEcCCC---CCCCCC
Q psy15979        104 QLTGTNQYQNRRLVRKRFD---RGNSTN  128 (152)
Q Consensus       104 ~L~~~~~Y~~rV~A~N~~G---~g~~s~  128 (152)
                      .+.++--|+|||.|.|.+|   .++||.
T Consensus       215 ~~rPgRwyefrvaavn~~G~rGFs~PSk  242 (516)
T KOG4802|consen  215 DMRPGRWYEFRVAAVNAYGFRGFSEPSK  242 (516)
T ss_pred             ecCcceeEEEEEeeeecccccccCCCCC
Confidence            5677899999999999997   444544

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=82.35  E-value=4.6  Score=24.25  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=15.9

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .++.+.|.|  .|.|.+|....+
T Consensus        52 ~~D~G~Y~C--~a~N~~G~~~~~   72 (75)
T cd05750          52 LADSGEYTC--VVENILGNDTVT   72 (75)
T ss_pred             cccCeEEEE--EEEEcCCceeEE
Confidence            445889998  789999976443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=82.33  E-value=1.5  Score=27.08  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=17.2

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      ...+...+-. ++.|.|.|.+.+.
T Consensus        34 ~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692          34 DEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             CceEEeeccC-CCCceEEEEeCCC
Confidence            3456666666 8999999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=82.26  E-value=2.1  Score=27.14  Aligned_cols=25  Identities=8%  Similarity=0.105  Sum_probs=19.1

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      +.|.|.....+|...|+|+|.+...
T Consensus        46 s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705          46 SSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecchhCCCEEEEEEECccc
Confidence            4566656667788999999999753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>KOG0196|consensus

Probab=82.23  E-value=8.4  Score=35.11  Aligned_cols=62  Identities=13%  Similarity=0.103  Sum_probs=38.7

Q ss_pred             CCCCeEEEEEEecC---CCCcceEEEEEEECCCCC-------------CCc-----ceE---EecCCCeEEEEEEEEcCC
Q psy15979         66 RLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNE-------------PSP-----MSN---QLTGTNQYQNRRLVRKRF  121 (152)
Q Consensus        66 ~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~-------------~~~-----~~~---~L~~~~~Y~~rV~A~N~~  121 (152)
                      ...+++.|.|..+.   +.+-..|.+-+++-....             |..     ...   .|.+.+.|.|-|.|.|.+
T Consensus       342 vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~YTFeV~AvNgV  421 (996)
T KOG0196|consen  342 VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTNYTFEVEAVNGV  421 (996)
T ss_pred             cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccccccEEEEEEeecc
Confidence            35689999999852   233345777666543211             111     122   455599999999999977


Q ss_pred             CCCCCC
Q psy15979        122 DRGNST  127 (152)
Q Consensus       122 G~g~~s  127 (152)
                      -.=.|.
T Consensus       422 S~lsp~  427 (996)
T KOG0196|consen  422 SDLSPF  427 (996)
T ss_pred             cccCCC
Confidence            644433

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=82.18  E-value=3.2  Score=25.42  Aligned_cols=19  Identities=26%  Similarity=0.221  Sum_probs=14.6

Q ss_pred             cCCCeEEEEEEEEcCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .+.+.|+|  .|.|.+|.-..
T Consensus        51 ~D~G~Y~C--~a~N~~G~~~~   69 (76)
T cd05867          51 SDTAVYQC--EARNRHGNLLA   69 (76)
T ss_pred             hhCEEEEE--EEECCCCeEEE
Confidence            34789999  88999997533

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=82.15  E-value=7.5  Score=24.37  Aligned_cols=20  Identities=5%  Similarity=0.102  Sum_probs=15.4

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .++.+.|.|  .|.|.+|....
T Consensus        62 ~~D~G~Y~C--~a~N~~G~~~~   81 (88)
T cd04968          62 FEDEGTYEC--EAENIKGKDTH   81 (88)
T ss_pred             cccCEEEEE--EEEECCCcEEE
Confidence            344889998  78999998643

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=82.02  E-value=4.4  Score=24.91  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=16.5

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .++.+.|.|  .|.|.+|....+
T Consensus        48 ~~D~G~Y~C--~A~N~~G~~~~~   68 (73)
T cd05852          48 KLDEGSYTC--FAENNRGKANST   68 (73)
T ss_pred             hhHCEEEEE--EEECCCCceeEE
Confidence            344889999  889999987654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=80.45  E-value=5.1  Score=26.13  Aligned_cols=26  Identities=8%  Similarity=0.028  Sum_probs=18.6

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ..+.+.|.|  .|.|.+|.-..+....+
T Consensus        65 ~~D~G~Ytc--~a~N~~G~~~~~~~l~V   90 (98)
T cd05762          65 QEHCGCYTL--EVENKLGSRQAQVNLTV   90 (98)
T ss_pred             hhhCEEEEE--EEEcCCCceeEEEEEEE
Confidence            334889988  77999999766544433

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=80.04  E-value=9.9  Score=24.45  Aligned_cols=20  Identities=15%  Similarity=0.283  Sum_probs=15.5

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .++.+.|.|  .|.|.+|....
T Consensus        73 ~~D~G~Y~C--~A~N~~G~~~~   92 (98)
T cd05870          73 LSDSGRYDC--EAASRIGGHQK   92 (98)
T ss_pred             cCCCEEEEE--EEeccCCccee
Confidence            444889999  88999997643

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=80.01  E-value=4.6  Score=25.66  Aligned_cols=24  Identities=21%  Similarity=0.123  Sum_probs=18.4

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      +.|.|..-..+|...|+|++.|..
T Consensus        46 s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884          46 STLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEcccccCCCEEEEEEechh
Confidence            467776665677889999999864

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-11
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-10
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-10
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-07
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-07
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-09
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-09
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-09
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-09
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-07
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-09
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	6e-09
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-08
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	1e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-08
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-06
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	6e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	6e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	8e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	9e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	9e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-07
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-07
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-04
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-07
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-04
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-05
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-07
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	5e-07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-07
2ens_A	96	Advanced glycosylation END product-specific recept	6e-07
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-07
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-06
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-05
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-06
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-06
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-06
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	4e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-06
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	5e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-06
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-05
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	8e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	8e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-04
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	6e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	9e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFR 60
           L+           +  TL I +   S  G Y+C A+NP+G     A L LS    P  F 
Sbjct: 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFD 201

Query: 61  SHPQ 64
             P 
Sbjct: 202 LKPV 205

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIF 59
           +L +     M+ + +  +L+I KV  SD G Y+C+A N +G     A L +  +  P  F
Sbjct: 45  KLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSF 104

Query: 60  RSHPQ 64
               +
Sbjct: 105 ARKLK 109

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFR 60
           L + ++  + +     ++ I  V ++D G Y C+A+N +G       + L   P    F 
Sbjct: 425 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPP---RFV 481

Query: 61  SHPQ 64
               
Sbjct: 482 KKLS 485

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
            +       M    +  TL + KV   D G Y+C A+N  GK    A L +   P    F
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR---F 293

Query: 60  RSHPQ 64
               +
Sbjct: 294 IKKLE 298

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +  ++   +    +  TL   +   ++ G Y+C+  N  G    +  LS
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFR 60
           ++ + +  M    S   L +  +   D G+Y+CEA N  G       L++   P   +FR
Sbjct: 332 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP---VFR 388

Query: 61  SHPQ 64
             P 
Sbjct: 389 KKPH 392

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 56.8 bits (137), Expect = 9e-11
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 4   ETTERRI-METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
            +    I +    S   L +     +DFGNY+C A N +G+      L     P+     
Sbjct: 61  SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 120

Query: 63  PQGRLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNE 97
                 ++  + +     T   P+ ++K ++R +    
Sbjct: 121 QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV 158

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
            +  ++R      G +  L I +   +D G Y  E  +    H+  ++LSG+     +  
Sbjct: 43  AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 102

Query: 62  HPQGRLP 68
             + +  
Sbjct: 103 FQRLKQA 109

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 3   LETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L  T+   +    G      I  V  +D G Y     N  G   +   +S
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
              +     R  L I  V  ++ G YS +ATN  G+    A L +  +  P  F    Q
Sbjct: 53  GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
           ++++    +   G  ++L+I +    D G YS  ATN +G+    A L 
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 52.7 bits (127), Expect = 5e-10
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP 56
           ++ +E   +E   +   L I        G Y+    N +G  +A + L+   KP+P
Sbjct: 48  IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 55.3 bits (133), Expect = 5e-10
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
            +  ++R      G +  L I +   +D G Y  E  +    H+  ++LSG+     +  
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207

Query: 62  HPQGRLP 68
             + +  
Sbjct: 208 FQRLKQA 214

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 1   MRLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             L + +   +    G      I  V  +D G Y     N  G   +   +S
Sbjct: 261 KALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +   E+   +      TL+I +    D G Y     +  GK ++ L+L  +    +  
Sbjct: 48  ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMM 103

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
           L  + +  M + G  HTL +      D G Y+C ATN +G+    + L L   P
Sbjct: 48  LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATP 101

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELS 51
            L+ +E   +E       L+++ V   +  G Y  + +N  G   A L++ 
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 3   LETTERRIMETRGSRH----TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
           L  ++   +E           L+  K    + GNY+  A NP+G            +P P
Sbjct: 46  LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 105

Query: 57  A 57
            
Sbjct: 106 V 106

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
           + ++ R     +G ++ L++R+   SD G           K  A L +  +  P+
Sbjct: 50  VGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSK--ASLIVRERSGPS 102

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
                 +++ + S  ++       +D GNY  +  N +G+  A  E+
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPN--PAIFRSHPQ 64
              + R    +L++  VV SD GNY+C   N  G   H  +L++  +    P +    P 
Sbjct: 67  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             L +  V  +D G Y C+ +N +G+    A+L +  K   
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
           ++ +T+R +++  G R  L I      D G Y C+AT+  G+       LE+  K     
Sbjct: 44  KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLT--- 100

Query: 59  FRSHPQ 64
           FR    
Sbjct: 101 FREVVS 106

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
            +E  E+ I++  GS   L +R ++ SD G Y C ATN  G+   +A+L++  + +    
Sbjct: 234 LIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH---H 288

Query: 60  RSH 62
             H
Sbjct: 289 HHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMG 42
           + + L I  +  SD G Y CE      
Sbjct: 151 ANNNLQILNINKSDEGIYRCEGRVEAR 177

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
            E + R  +E++G++  +  + +   D G YSC+ T+  G   +YL    +    +  SH
Sbjct: 43  TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102

Query: 63  PQGRLP 68
                 
Sbjct: 103 EHKFPT 108

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 49.6 bits (118), Expect = 5e-08
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53
           +   E+   +      TL+I +    D G Y     +  GK ++ L+L  +
Sbjct: 263 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 46.1 bits (109), Expect = 8e-07
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 3   LETTERRIMETRGS--RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +    +  M    +     + + K+   D G Y+ +  +    + + + L G     + +
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK 208

Query: 61  SHPQGRLP 68
                R  
Sbjct: 209 EAEFQRQE 216

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             +  +++      H+L+I  V + D G Y+C ATN  G+      L ++ K + 
Sbjct: 52  PDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 50.5 bits (121), Expect = 4e-09
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPN 55
             + +    R TL+I+ V   D G Y+  A N  G       L+++ +PN
Sbjct: 63  ISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFRS 61
           + T      + G +  L I     +DFG Y+C ATN +G       L L+  P+      
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS----- 198

Query: 62  HPQG-----RLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNEPSPMSNQLTGTN 109
            P G         +  +++         P+  +++  +++       + +    T 
Sbjct: 199 -PYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 46.3 bits (110), Expect = 8e-07
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
                 R  ++ +    +L I+ V  SD G Y CEA + +G H+  + L  +     F S
Sbjct: 47  DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-YAPKFIS 105

Query: 62  HPQ 64
           +  
Sbjct: 106 NQT 108

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 50.0 bits (120), Expect = 5e-09
 Identities = 19/48 (39%), Positives = 22/48 (45%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           L T+ R  + T   + T  I  V ASD GNYS    N  GK  A   L
Sbjct: 55  LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 49.4 bits (118), Expect = 8e-09
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 3   LETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
           L  ++    +   + H      L +      + G+Y+  A N  GK    +       P 
Sbjct: 42  LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

Query: 58  I 58
           I
Sbjct: 102 I 102

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L + ++  + +     ++ I  V ++D G Y C+A+N +G +     ++
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
          +       M    +  TL + KV   D G Y+C A+N  GK    A L +   P
Sbjct: 46 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 99

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           ++ + +  M    S   L +  +   D G+Y+CEA N  G   +   L  K  P +FR  
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKK 198

Query: 63  PQ 64
           P 
Sbjct: 199 PH 200

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
              R   E  G    L I      D G Y+C+A N  G     A LE+ G+
Sbjct: 48 PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRS 61
                +++ TR     +    V   D G Y   A N  G       L+++  P+P     
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP----- 201

Query: 62  HPQG-----RLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNE 97
            P+G        +S N+TW   +      +  + ++        
Sbjct: 202 -PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLP 68
           RI E +G  H L+I  V   D   Y   ATN  G       L  +  PA           
Sbjct: 53  RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-VPAKIHLPKTLEGM 111

Query: 69  NSY 71
            + 
Sbjct: 112 GAV 114

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49
           +  ++R  +   G  H L+I  V   D G+Y+           A L 
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN--PAIFRSHPQ 64
             ++ R  + +L++  VV SD GNY+C   N  G  +    L++  +    P +    P 
Sbjct: 63  GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 122

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
            +   +  I E+  +   L +  V   D G Y C ATN +G      +L + G    
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA 222

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          LE +E+  +        L ++ +   D G Y C+  N  G+  +Y EL 
Sbjct: 43 LENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 47.7 bits (114), Expect = 3e-08
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
          L+ + +          TL I      D G Y    TN  G+
Sbjct: 49 LQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
           L ++ +  +E  G    L++++   ++ G YSCEA          L+++G+ 
Sbjct: 51  LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLS--FRLQVAGQC 100

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI--F 59
           +  + RI E +G  H L+I  V   D   Y   ATN  G     A LE+       +   
Sbjct: 48  DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107

Query: 60  RSHPQ 64
                
Sbjct: 108 LEGMG 112

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 2   RLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            ++     +++ TR     +    V   D G Y   A N  G  +  +EL 
Sbjct: 144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             L      +++       L IR+V   D G Y+C+A + +G     A+  + G    
Sbjct: 49  ETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          +  + +  + T G+RHTL +R+V  +D G+Y+  A +
Sbjct: 48 ISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGS 84

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
          +  +++  +   G+   L+IR     D G Y+CE         A L +  K + 
Sbjct: 48 IRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST--ASLHVEEKASG 99

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
           L  +    +   G +H L++        G  S +A N
Sbjct: 44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN 81

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
               +++ +    H+L+   V ASD G Y+C A N  G+    ++L 
Sbjct: 48 SDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 6e-08
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN 55
          ++ ++R  +  +G  H L+I   +  D G+Y            A + +   P+
Sbjct: 46 VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS 98

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           +  +   +++   +   L++  V   D G Y CE  +        + ++  P   I  S 
Sbjct: 53  VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESA--SFTVTVTEPP-VRIIYSG 109

Query: 63  P 63
           P
Sbjct: 110 P 110

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.0 bits (112), Expect = 8e-08
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             I        +L        D GNY+  A NP G+      L +    + 
Sbjct: 56  YTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN--PAIFRSHPQ 64
             ++ R  + +L++  VV SD GNY+C   N  G  +    L++  +    P +    P 
Sbjct: 171 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 230

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47
           L  +ER ++        L +      D G YSC           +
Sbjct: 49 GLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHF 90

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
           T      L +  V   D G Y+C A N +G   H A+L 
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 46.5 bits (111), Expect = 9e-08
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 1  MRLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
          +++E ++R        +   L+IR V   D  +   +A N  G+    A+L +  K
Sbjct: 44 VKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 46.6 bits (111), Expect = 9e-08
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          +E +E  +++  G +H L++ +    D G + C    
Sbjct: 50 VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 46.5 bits (111), Expect = 9e-08
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
          +    +  +        L I K   SD G Y+C   N  G 
Sbjct: 47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 10/63 (15%), Positives = 16/63 (25%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
              +    + + GS   L        + G Y C          A + L  K     +  
Sbjct: 35 DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNV 94

Query: 62 HPQ 64
            Q
Sbjct: 95 LAQ 97

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 2   RLETTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF 59
           +L   ++            TL + +V     GNYSC A+N  GKH   +      +    
Sbjct: 227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN- 285

Query: 60  RSHPQ 64
             H  
Sbjct: 286 SHHHH 290

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
              + R    +L++  VV SD GNY+C   N  G   H  +L+
Sbjct: 55 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 2   RLETTERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNP 56
           +L   ++RI          TL I      D G Y C  T   G        +++  K   
Sbjct: 44  KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-- 101

Query: 57  AIFRSHPQ 64
            +F++ P 
Sbjct: 102 -MFKNAPT 108

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           + L IR +  +D G Y CE          + ++ 
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
           S   L I  V   D G Y C   N        A L+L G+ +P + R   Q
Sbjct: 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQ 437

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 2   RLETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
           ++   +R  +    + +      L I  V A+D G Y C A + +G   H A L + G P
Sbjct: 469 KIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 3   LETTERRIMETRGSRH--TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
               +  ++  R  +   TL+I+  V  D G Y C   N +G       L+    P   +
Sbjct: 289 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAK 347

Query: 61  SHPQ 64
             P 
Sbjct: 348 IDPP 351

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
            L I  V AS  GN++C A N  G       L +   P    +   P 
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP---RWILEPT 722

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
                I    G   TL +  +  ++ G Y CEA N +G 
Sbjct: 763 KKSDNIRVEEG---TLHVDNIQKTNEGYYLCEAINGIGS 798

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 18/133 (13%)

Query: 3   LETTERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMG---KHRAYLELSGKPNPAI 58
           L    ++ +   G   TL+I  V   SD   Y+C A N  G   +    +++   P    
Sbjct: 567 LPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP 623

Query: 59  FRSHPQGRLPN-SYNITWMVSSY-TPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRL 116
           F              +   V     PL    I +      +       +T +   +   +
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLN---IDWTL--DGQAISEDLGITTSRVGRRGSV 678

Query: 117 VR----KRFDRGN 125
           +     +    GN
Sbjct: 679 LTIEAVEASHAGN 691

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 12/109 (11%), Positives = 29/109 (26%), Gaps = 14/109 (12%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
            L       ++ RG   +++I K+  +  G Y     +    +     +S +        
Sbjct: 88  SLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLR 146

Query: 62  HPQGRLPNS-------------YNITWMVSSYTPLEEFKIKYRKIPGNE 97
            P  R   +               + W++         +     +   E
Sbjct: 147 RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 2/41 (4%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
           + +++          G Y   A N   +      L +    
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 3   LETTERRIMETRGSRH------TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
           LE      M T  +           +  V  +D G Y+C ++    +  A + +  K 
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTIVEKG 325

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
           +  + I E+ G++ TL I +   +D   Y C    
Sbjct: 58 MSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
          +L  + R    TR +   + ++  V +D G Y+C  ++P G    Y  ++      
Sbjct: 42 QLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 6/58 (10%), Positives = 16/58 (27%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP 63
            +           +++I K+  +  G Y     +    +     +S +         P
Sbjct: 91  CQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 10/77 (12%), Positives = 16/77 (20%), Gaps = 21/77 (27%)

Query: 17  RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL---------------------SGKPN 55
            +++          G Y   A N   +      L                      G P 
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPL 436

Query: 56  PAIFRSHPQGRLPNSYN 72
           P+        + PN   
Sbjct: 437 PSWTWKKCSDKSPNCTE 453

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
              +  V  +D G Y+C ++    +  A + +  K 
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKG 325

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 5   TTERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLEL 50
           +  R  + +   R  L I  + + +D G Y C  T+  G  +A + L
Sbjct: 133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
            + E          +      +G YSC          A ++L G P     ++   
Sbjct: 39 VVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMG-TANIQLHGPP---RVKAVKS 91

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG---KHRAYLELSGKPNPAIF 59
           ++  + R    R +   L I  V  SD G Y C A N +G   +    L++  KP     
Sbjct: 48  IKLFDTRY-SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK---I 103

Query: 60  RSHPQ 64
              P 
Sbjct: 104 TRPPI 108

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLE 49
           L    R  +   G   +L I  V   D G Y C A N +G        LE
Sbjct: 141 LRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53
           +   E+   +      TL+I +    D G Y     +  GK ++ L+L  +
Sbjct: 158 ISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 3   LETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +    +  M          + + K+   D G Y+ +  +    + + + L G     + +
Sbjct: 44  IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK 103

Query: 61  SHPQGRLP 68
                R  
Sbjct: 104 EAEFQRQE 111

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 12/62 (19%), Positives = 19/62 (30%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           + +                L +  V   D G YSC A+N +G   A +      +     
Sbjct: 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287

Query: 61  SH 62
            H
Sbjct: 288 HH 289

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 46.1 bits (109), Expect = 7e-07
 Identities = 9/63 (14%), Positives = 15/63 (23%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
              +    ++      TL  R     + G Y C            + L  K     +  
Sbjct: 35 DGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNL 94

Query: 62 HPQ 64
            Q
Sbjct: 95 LAQ 97

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +E  E+ I++  GS   L +R ++ SD G Y C ATN  G+      L 
Sbjct: 139 IEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMG 42
          + L I  +  SD G Y CE      
Sbjct: 57 NNLQILNINKSDEGIYRCEGRVEAR 81

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           L    R  ++  G+R  L I  +  +D G YSC       +  A L +   P      S 
Sbjct: 47  LRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ--ERTSATLTVRALPARFTEGSG 104

Query: 63  PQ 64
           P 
Sbjct: 105 PS 106

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 3   LETTERRIMETRGSRH-------TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           + T  +       S +        L+   + ASD G YSCEA N  G       + 
Sbjct: 149 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             +  + V   D G Y+C  +   G       ++L     P    +   
Sbjct: 68  TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNI 115

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 3   LETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
           L   E   I    G  H L +R++   D G    EA    G  RA   L     P++F  
Sbjct: 54  LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSR 109

Query: 62  HP 63
             
Sbjct: 110 SG 111

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            L+  +     ++     L I     +  G+Y CE +       +   L
Sbjct: 56  HLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 11/138 (7%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
           +   +  +       +  L        D G+Y C   N     R  +      N      
Sbjct: 46  KTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCY 105

Query: 62  HPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRF 121
           + Q      +     V+    L    +++ K   NE   +         Y++ + +    
Sbjct: 106 NAQAI----FKQKLPVAGDGGLVCPYMEFFKNENNELPKLQ-------WYKDCKPLLLDN 154

Query: 122 DRGNSTNGGLIVPKAKRE 139
              +     LIV     +
Sbjct: 155 IHFSGVKDRLIVMNVAEK 172

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLEL 50
                             L I ++ +  +   ++C A N  G   AY++L
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 3/40 (7%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
           L          +     L++  V     GNY+C A+    
Sbjct: 150 LLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYL 186

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            T R  + T        +R+   SD G Y         K  A + + 
Sbjct: 66  DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRS 61
            +  RI + R     L I     +D G Y C ATN  G      A L +  +     F  
Sbjct: 153 ASNGRIKQLRS--GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSI 210

Query: 62  HPQ 64
            P 
Sbjct: 211 LPM 213

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 7/65 (10%)

Query: 7   ERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK--HRAYL----ELSGKPNPAIF 59
              I     +   L I+ +    D   Y C A N +G+    A L    E          
Sbjct: 52  FETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI 111

Query: 60  RSHPQ 64
              PQ
Sbjct: 112 DMGPQ 116

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI 58
              ++      D  NY+C A + +G     A + +   P    
Sbjct: 255 GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGT 297

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             L+IR V         C  TN +G  +A L + 
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
           +I        +L I +V   D   Y+C+A N +G+
Sbjct: 89  QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 11  METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
           +    +   L++     S  GNY C       +      LS    P     H +
Sbjct: 60  IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSE 112

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 44.7 bits (106), Expect = 5e-07
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          +  + + I E +G +  L I     +D   Y   A +
Sbjct: 48 IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGD 84

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.1 bits (111), Expect = 5e-07
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
           +R       +  S  G Y CEATNP+G     +E++     A+   H  
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNS 70
            L + +    + GNY+  A NP G+            P    F  +P+  +P++
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP----FEFNPEDPIPDT 113

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 2   RLETTERRIMETR-GSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLELS------GK 53
           ++      ++E   GS   L I+ +    D   Y C A+N +G+      L+        
Sbjct: 46  KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP 105

Query: 54  PNPAIFRSHPQ 64
                    PQ
Sbjct: 106 RGFPTIDMGPQ 116

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKP 54
               R       S   L I +   SD G Y C ATN  G      A L + G  
Sbjct: 153 NNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHPQ 64
              +  +     L ++ V  SD G Y C+  +          +L + G P    F   P+
Sbjct: 50  YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPF---FTVEPK 106

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 44.3 bits (105), Expect = 6e-07
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELS 51
               L++ ++   D G YSC AT+     +    + +S
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 2   RLETTERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELSGKPNPAI 58
           +L   ++RI          TL I      D G Y C  T   G +  A + +       +
Sbjct: 44  KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-M 102

Query: 59  FRSHPQ 64
           F++ P 
Sbjct: 103 FKNAPT 108

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           E  E+ I     S   L IR V  +D   Y C A N  G+  A + L 
Sbjct: 242 EDDEKHIFSDDSS--ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK----HRAYLELSGKPNPAIFRS 61
           S + L IR +  +D G Y CE               + ++  P     +S
Sbjct: 153 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQS 202

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 10/62 (16%), Positives = 14/62 (22%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
                             L +   +  D G Y C   N     +  +EL    N   F  
Sbjct: 65  ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP 124

Query: 62  HP 63
             
Sbjct: 125 FI 126

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L+    + +  RG+   L++  V   D G Y C  T      +  +  S
Sbjct: 166 LDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)

Query: 2   RLETTERRIMETRG---SRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLEL 50
           R+    R+             L+   V   D   ++ C   N +        +
Sbjct: 279 RVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 43.9 bits (104), Expect = 8e-07
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
                   L I+  +  D G Y+C A N +G+    A++ 
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           +  + +   +    G    L  +KV   D G Y+C A          +EL
Sbjct: 287 VLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 46.3 bits (109), Expect = 8e-07
 Identities = 17/140 (12%), Positives = 35/140 (25%), Gaps = 7/140 (5%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRS 61
               +  +    ++    +    A+    Y CEA N +G+        ++  P       
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPE---ITL 555

Query: 62  HPQGRLP--NSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRK 119
            P  +     S ++       T       K    P              N     +L   
Sbjct: 556 QPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNAT 615

Query: 120 RFDRGNSTNGGLIVPKAKRE 139
            F    +    + +  A  +
Sbjct: 616 MFSNSTNDILIMELKNASLQ 635

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 11  METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFRSHPQ 64
            E +    TL I  V  SD G Y+C A++ +   +   ++ +  KP  A       
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
            L      +++       L IR+V   D G Y+C+A + +G     A+  + G    
Sbjct: 706 TLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 14/59 (23%), Positives = 19/59 (32%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
            E           TL I KV+ +D G Y C           Y+ +    +P I     Q
Sbjct: 74  VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQ 132

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 23/147 (15%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFR--------SHPQGRL 67
           H L I +V   D GNY+   TNP+ K +    + L     P I          S+  G  
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440

Query: 68  ----------PNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSP---MSNQLTGTNQYQNR 114
                     P  ++I W             +   +    P           G N+ +  
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500

Query: 115 RLVRKRFDRGNSTNGGLIVPKAKREGR 141
           +      +  N T   L++  A     
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSAL 527

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 3/66 (4%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN-PAI 58
             +        +      + ++     D G+Y C A +     +H    +L+        
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668

Query: 59  FRSHPQ 64
              + +
Sbjct: 669 ITGNLE 674

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           S+    I   + S  G   CEA      +++ + +       I+ 
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL---------SGK 53
           +   +RR +        L I  V ASD GNYSC  ++P      + +          + K
Sbjct: 53  ITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK 110

Query: 54  PNPAIFRSHPQ 64
           P PA      +
Sbjct: 111 PYPADIVVQFK 121

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYL 48
           S   L I  +   D G Y CEA N  GK  H+A +
Sbjct: 163 SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHP 63
           +R     R S   L+ +  +  D G Y+CE  N +GK   H   L +   P    +   P
Sbjct: 259 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK---YEQKP 315

Query: 64  Q 64
           +
Sbjct: 316 E 316

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPA 57
              +     + +  G   +L+  +  ASD G+Y C A  P G           +      
Sbjct: 48  YNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA-- 102

Query: 58  IFRSHPQ 64
              +   
Sbjct: 103 -SPAKTH 108

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +   L+I+ V   D G Y C ATN  G       + 
Sbjct: 358 TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
          L  + +      G    L I  +  +D   Y+C+      + RA L + G+ 
Sbjct: 48 LRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQ--AQSRAQLLVQGRR 97

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMG---KHRAYLELSGKP---NPAIFRSHPQ 64
            L I ++   D G Y C A NP      + A + +   P       F   P 
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS 229

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           ++   ++     GS   L+I  V   D G Y+C  T       A  EL+    P  F +H
Sbjct: 262 IQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-VPPWFLNH 318

Query: 63  PQ 64
           P 
Sbjct: 319 PS 320

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            +  ++   +    +   L I  VV SD G Y C A N  G  ++  +L 
Sbjct: 352 VVIPSDYFQIVGGSN---LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVAS-----DFGNYSCEATNPMGK----HRAYLELS 51
           + L   +R+     GS   L+I+ ++ S     D G Y CEA+           A + ++
Sbjct: 63  LALGMDDRKQQLPNGS---LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119

Query: 52  GKPNPAIFRSHPQ 64
           G      F S  +
Sbjct: 120 GPLR---FLSQTE 129

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 9/38 (23%), Positives = 13/38 (34%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
                R  +   G +H L+I     +D   YS   T 
Sbjct: 48 IPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             +  +   S   L I+ V   D G Y CEA N  G+  ++  + +  +P+   +     
Sbjct: 246 GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD---WLDVIT 302

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-------HRAYLELSGKPN 55
           +    RR +        L I K  ASD GNYSC AT+ +           + L L+ +  
Sbjct: 145 IPADGRRFVSQTT--GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202

Query: 56  ----PAIFRSHPQ 64
               P+I    P 
Sbjct: 203 RQYAPSIKAKFPA 215

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L +  R  +    S   L   K+V  D G Y C A N  G   A  EL+
Sbjct: 335 LASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 18/75 (24%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKP--------------NPAIFRS 61
            L I  +  SD G Y C              Y+ L G P               P     
Sbjct: 69  QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSC 128

Query: 62  HPQGRLPNSYNITWM 76
             QG  P   ++ W+
Sbjct: 129 QAQGP-PEPVDLLWL 142

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 9/65 (13%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIF 59
           ++ +  R     G    L I      D G Y C A N MG        L +  +    + 
Sbjct: 151 VDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR---VG 204

Query: 60  RSHPQ 64
             H  
Sbjct: 205 TKHHH 209

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 8/65 (12%)

Query: 8   RRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK---HRAYLEL----SGKPNPAIF 59
             ++E  G    L I  V    D   Y C A N +G      A L +           + 
Sbjct: 54  YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVI 113

Query: 60  RSHPQ 64
              P 
Sbjct: 114 TQGPG 118

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPA 57
             L+  + RI    G    LMI     SD G Y C  TN +G+     A L +  +P+  
Sbjct: 151 SPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS-- 205

Query: 58  IFRSHPQ 64
            F     
Sbjct: 206 -FVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVA--SDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
           +    R++   GS   L I        D G Y C A N +G+   H A LE++       
Sbjct: 56  DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL--RDD 113

Query: 59  FRSHPQ 64
           FR +P 
Sbjct: 114 FRQNPS 119

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI 58
           + + T + RI +       L IR     D G Y+C A+ P G+    AY+E+     P  
Sbjct: 47  VLVSTQDSRIKQLENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQ 104

Query: 59  F 59
            
Sbjct: 105 P 105

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            L+  E     +R     + I K   +  GNY CE T          +L
Sbjct: 59  HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
           T+  +      R  L I      D G Y+C  T  +  H+ 
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD 270

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 21/116 (18%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRA-----YLELSGKPNPAIFRSHPQGRLP----N 69
            L +  +   D G Y C   +  G         Y+ +       +     +  +      
Sbjct: 52  VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111

Query: 70  SYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGN 125
              I   V+         +   +  G+   P+         Y ++R     F+  +
Sbjct: 112 EITIPCRVTDPQL----VVTLHEKKGDVALPVP--------YDHQRGFSGIFEDRS 155

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L IR V  SD G Y C  +N     +    L 
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             L I  V   D G Y C A+N MG   H   + +   P    +   P+
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY---WLDEPK 320

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +  T++ R    S    Y C  +N  G   A   +S
Sbjct: 365 AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 23/106 (21%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGK---HRAYLELSGKP 54
                +   +  R    TL+I            G Y C A N  G    +R  L++S  P
Sbjct: 57  FFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSP 116

Query: 55  ---------------NPAIFRSHPQGRLPNSYNITWMVSSYTPLEE 85
                           P   + +P   LP S  I WM SS  P+ +
Sbjct: 117 LWPKENLDPVVVQEGAPLTLQCNPPPGLP-SPVIFWMSSSMEPITQ 161

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          +L  + R    TR +   + +R  + +D G Y+C  ++P G    Y  ++
Sbjct: 48 QLVESNR----TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRS 61
               R+    G    L+I  V   D GNY C A N +G      A L +  K        
Sbjct: 159 GASSRVRIVDG--GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

Query: 62  H 62
           H
Sbjct: 217 H 217

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 4   ETTERRIMETRGS-RHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIF 59
           E    R+    G+      ++     D G Y C A N +G+     A L+++   +   F
Sbjct: 54  EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD--F 111

Query: 60  RSHPQ 64
           R  P+
Sbjct: 112 RVEPK 116

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 3   LETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN 55
            +  E+      G  +     TL I     +D G + C A N  G       LE+  K  
Sbjct: 253 TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF 312

Query: 56  PAIFRSHPQ 64
             IF     
Sbjct: 313 INIFPMINT 321

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 11/49 (22%), Positives = 13/49 (26%), Gaps = 5/49 (10%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQG 65
              I        G   C+A N +GK          G     I   HP  
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI---HPHH 520

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
                ++  +  K  A++ G Y+C   + +     Y+ +      
Sbjct: 74  TNENKQNEWITEKAEATNTGKYTCTNKHGLSN-SIYVFVRDPAKL 117

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 4/34 (11%), Positives = 12/34 (35%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             L + ++  ++ G Y+   +N          + 
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
           L   +R  +   G+R  L IR +VA D G Y C      GK R    L+ +  P+   S
Sbjct: 58  LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPSS 112

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
             L+T+   + ++   R  L +R    S  G   C  +      +  ++L     P    
Sbjct: 43  RGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT 101

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
             P   +P    +       TP++   + +  + G +    +  L 
Sbjct: 102 VSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALG 147

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 4e-06
 Identities = 11/56 (19%), Positives = 18/56 (32%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
                              L + +    + GNY+  A NP G+  A +  +   NP
Sbjct: 292 FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 28/113 (24%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRAYLEL--------- 50
           +    T  +          L +  V +  +  N +C A N +G+    +++         
Sbjct: 197 LEQSATVMKSGGLPSL--GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ 254

Query: 51  ----------------SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFK 87
                            G+P P++        L  +  I          E  +
Sbjct: 255 LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVR 307

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
              S   L I      D G+Y C A N  GK   +  L    +PN   +     
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN---WVQIIN 303

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIF 59
            +   R + +  G    L I KV  SD GNY+C  TN +  H+       L  + +  + 
Sbjct: 145 YQDNRRFVSQETG---NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMG 201

Query: 60  RSHPQGRLPNSYNIT 74
              P+  +     + 
Sbjct: 202 EYEPKIEVQFPETVP 216

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L T +R  +     + TL I  V  SD G Y C A N  G   +  ELS
Sbjct: 336 LLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 23/101 (22%)

Query: 4   ETTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGK---HRAYLELSGKP----- 54
              + R     GS   L+I       D G Y C ATN  G      A L+ +        
Sbjct: 51  IGMDFRYSVVDGS---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTR 107

Query: 55  ----------NPAIFRSHPQGRLPNSYNITWMVSSYTPLEE 85
                        +    P        +  W+ + Y   ++
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSG-ELSYAWIFNEYPSYQD 147

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             + ++   +   G YSC   N +G  +  L L 
Sbjct: 176 PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 7/111 (6%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
           R+  T   +     S   + +  +  SD G Y C+     G       L+    P+  R 
Sbjct: 71  RVHFTSNDVKSGDAS---INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC 127

Query: 62  HPQGRLPNSYNITW--MVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQ 110
              G      +          +     + +++K+  ++  P       T+ 
Sbjct: 128 FVDGSEEIGNDFKLKCEPKEGSL--PLQFEWQKLSDSQTMPTPWLAEMTSP 176

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNP 56
           T   I    G   TL I  +V +DF   Y+C A N  G     + L  + + 
Sbjct: 64  TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGKPNPAIFR 60
            L  + R  +       TL +  V  +D   Y C   N +  +R+  + L     P    
Sbjct: 506 SLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563

Query: 61  SHPQ 64
             P 
Sbjct: 564 ISPP 567

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-HRAYLELSGKPNPAIFR 60
            L  + R  +       TL +  V  +D G Y C   N +   H   + L+    P    
Sbjct: 328 SLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT 385

Query: 61  SHPQ 64
             P 
Sbjct: 386 ISPS 389

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
           S   L I  +  ++ G+Y+C+A N            ++    P        
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 2/49 (4%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             L I  +   + G Y+C+A N            ++             
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN 474

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAI 58
            L  + R  +       TL +  V  +D  +Y CE  NP+   R     L +   P+   
Sbjct: 150 SLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT 207

Query: 59  FRSHPQ 64
                 
Sbjct: 208 ISPLNT 213

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L I K+  ++ G Y+C  +N        +  S
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKS 637

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 43.7 bits (102), Expect = 5e-06
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP 63
           ++ ++ V  SD G Y+C       + R  + L    +       P
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 12/147 (8%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
           R +     + +T  +  +L+++ V  +D G Y+CE          +  +EL   P     
Sbjct: 68  RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127

Query: 60  RSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSP------MSNQLTGTNQYQN 113
                G   ++  +   + S       K+ +    G+           SN  +G  Q   
Sbjct: 128 LRVRVG---DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLG 184

Query: 114 RRLVRKRFDRG-NSTNGGLIVPKAKRE 139
           R   R       +  +G + +   K  
Sbjct: 185 RFRNRVDLTGDISRNDGSIKLQTVKES 211

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
            +    TL+I+  V  D G Y C   N +G       L+    P   +  P 
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAKIDPP 315

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLEL 50
           S   L I  V   D G Y C   N        A L+L
Sbjct: 351 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 27/114 (23%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDF------GNYSCEATNPMGK---HRAYLELSGKP 54
           +    R + + G    L+     A D+        Y+C A N  G       ++      
Sbjct: 48  DVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQ 104

Query: 55  --------------NPAIFRSHPQGRLPN-SYNITWMVSSYTPLEEFKIKYRKI 93
                         N A+ +      + +    ++W                K 
Sbjct: 105 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 43.2 bits (101), Expect = 6e-06
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKP 54
           E +    TL I  V  SD G Y+C A++ +   K+  ++ +   P
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 11/47 (23%), Positives = 14/47 (29%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
             +  R       + TL I      D G + C A N  G       L
Sbjct: 238 HNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 4/114 (3%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSY 71
                ++  +  K  A+  G Y+C  +N +     Y+ +       +      G+  +  
Sbjct: 51  MVENKKNEWIQEKAEATRTGTYTCSNSNGLTS-SIYVFVRDPAKLFLVGLPLFGKEDSDA 109

Query: 72  NITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGN 125
            +   ++    + +      +  G         +         + V++ + R  
Sbjct: 110 LVRCPLTDP-QVSQ--YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLC 160

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            R        ++ +     L+   V A D G Y C+A N  G        
Sbjct: 154 TRAFMNSSFTIDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 17/126 (13%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNSYNITW- 75
            +    V   D G Y+C  +   G+      + L+    P+         +         
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT 125

Query: 76  -MVSSYTPLEEFKIKYR-KIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIV 133
                 +P      +Y     G         +   +  + R  +   F   +  +G LI 
Sbjct: 126 CSEHDGSP----PSEYSWFKDG-------ISMLTADAKKTRAFMNSSF-TIDPKSGDLIF 173

Query: 134 PKAKRE 139
                 
Sbjct: 174 DPVTAF 179

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +     E RI +    +  L  R  + +D GNY+C   N     +    L      + F 
Sbjct: 65  INFRLPENRISK---EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN 121

Query: 61  S 61
           S
Sbjct: 122 S 122

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           E+      E       L I+KV + D   +Y C A +  G+     ++  K     + 
Sbjct: 282 ESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYT 339

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 41.6 bits (98), Expect = 6e-06
 Identities = 10/32 (31%), Positives = 12/32 (37%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          R   +  G RH L+   VV  D G Y      
Sbjct: 57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITNG 88

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
          L   ++  +   G+   L++R +   D G YSC   +      A L ++  P+ 
Sbjct: 48 LRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTT--SATLTVTALPSG 99

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 3/57 (5%)

Query: 15  GSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHPQGRLP 68
           G+   L+   V   D G Y C   N         + L++   P              
Sbjct: 62  GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGKPNPAIFRSHPQGR 66
           T  ++   M+  V     G Y C   N      +  +E+       +   HP  +
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL--GHPDNK 212

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 24/103 (23%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSGKPNPAIFRSHP 63
           ++ +      TL       +  GN +       GK     +   +  +            
Sbjct: 248 QMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQK-------- 299

Query: 64  QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
                   N+T  V   T     K+       N+ + +S +  
Sbjct: 300 --------NLTCEVWGPTSP---KLMLSLKLENKEAKVSKREK 331

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 13/112 (11%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS---GKPNPAIFRSHPQGRLPNSYN 72
              TL + ++   D G ++C       K    +++     +   +I       ++  S+ 
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFP 199

Query: 73  ITWMVSSYTPLEEFKIKYRKIPGNEP----SPMSNQLTGTNQYQNRRLVRKR 120
           + + V   T   E   +  +   ++        + +++     Q+ +L   +
Sbjct: 200 LAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGK 251

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELSGKPNPAI 58
           +  + R          L+I+ +   D   Y CE  +   + +     L+   +  +
Sbjct: 53  DRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL 108

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 17/44 (38%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           TL    V+ SD G Y+C  TN  G   A   L+          H
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHH 451

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
          T  ++   M+  V     G Y C   N      +
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 78

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAI 58
            + R          L+I+ +   D   Y CE  +   + +     L+   +  +
Sbjct: 56  ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL 109

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            TL + ++   D G ++C       K    +++ 
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 176

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 6  TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
            R  ++ +G   TL I+ +  SD G Y+C AT+  G+    A L+
Sbjct: 53 DPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            T+ I  +V  D G Y C A+N   ++      
Sbjct: 90  STISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNP 56
           TL    V   D G Y+C  +N +G   A   L  +G  + 
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH 437

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
             E ++  +R    +  +      D G Y C      G   +         P +  + PQ
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ 269

Query: 65  --GRLPNSYNITWMVSSYT---PLEEFKIKYRKIPGN 96
                     I    +S     P+   +++Y    G+
Sbjct: 270 LASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS 306

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 12/39 (30%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
             + +  R +     I      D G Y CEA    G   
Sbjct: 212 GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 16/135 (11%), Positives = 32/135 (23%), Gaps = 27/135 (20%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGR 66
           +  +       L I K   S  G Y C              + +       +  +     
Sbjct: 122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSP 181

Query: 67  LPNSYNITWM--VSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKRFDRG 124
           L     +T              ++ +                    Y   + +R R    
Sbjct: 182 LLEGNLVTLSCETKLLLQRPGLQLYFSF------------------YMGSKTLRGR---- 219

Query: 125 NSTNGGLIVPKAKRE 139
            +T+    +  A+RE
Sbjct: 220 -NTSSEYQILTARRE 233

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKP 54
           E +    TL I  V  SD G Y+C A++ +   K+  ++ +  KP
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELSGKPNPAIFRSHPQ 64
               S     I K  A D G Y C        K  A +E+   P+      H +
Sbjct: 50  RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPD---ITGHKR 100

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 8   RRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK--HRAYLE 49
           R  +  + +   L I  + +  D G Y C ATN +G       L 
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
           L+ TER  +    S   L I  +   D G Y CE +NP+   R+
Sbjct: 150 LQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRS 191

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSGKPNPAIFRSHPQGRL 67
           +++    ++ ++ +  V   D G Y C   ++ +      + +         R +P    
Sbjct: 57  QLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCR-YPSHWR 115

Query: 68  PNSY 71
           P  +
Sbjct: 116 PLEH 119

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
           +  +      T  I +   S  G+Y C          
Sbjct: 125 KSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
             ++     H + I      D G Y C        + 
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 7/41 (17%), Positives = 13/41 (31%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
             L+I      D G Y C       + +  + +S      +
Sbjct: 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV 222

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 1/40 (2%)

Query: 12  ETRGSRHTLMIRKVVASDFGN-YSCEATNPMGKHRAYLEL 50
               +  TL    V     GN Y+C   N          +
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 10/140 (7%)

Query: 2   RLETTERRIMETRGSRH---TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
           R    E RI+     +    +++I  +   D G Y C A +           + +     
Sbjct: 271 RAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE 330

Query: 59  FRSHPQGRLPNSYNITWMVS-----SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQN 113
             + P+   P         S      Y   E   IKY  +     +     L  +  +  
Sbjct: 331 ESTIPRS--PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVK 388

Query: 114 RRLVRKRFDRGNSTNGGLIV 133
            +   +        NG   V
Sbjct: 389 AQYEGRLSLLEEPGNGTFTV 408

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQG 65
            I  T     +++I ++  SD G Y C+A +    ++   +L               
Sbjct: 176 DIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLR 232

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           L+ + + +    G+ + L I +V   D G Y+  A N  G     + L
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 6/37 (16%), Positives = 9/37 (24%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
           +  +         I K    D G+Y C          
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS 164

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELSGKPNPAIFRS 61
             G    L ++ +  +D G Y C   T P G +   + L    +      
Sbjct: 66  APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHG 115

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 8/66 (12%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--------AYLELSGKPNPAI 58
             R      +  TL +  V   D G Y C+      +                  P+  +
Sbjct: 79  LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNV 138

Query: 59  FRSHPQ 64
             S  +
Sbjct: 139 HVSTAE 144

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 37.2 bits (85), Expect = 9e-04
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRA 46
            L+IR    +D G   CE     G+  A
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDA 241

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 4   ETTERRIMETRGSRHTLMI--RKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
           +    R++   GS   L I   +    D G Y C A N +G+   H A LE++   +   
Sbjct: 56  DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH--- 112

Query: 59  FRSH 62
              H
Sbjct: 113 HHHH 116

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 15  GSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNSYN 72
            +  TL +    + + G+Y     +        + + L  +    +  + PQ    +S  
Sbjct: 49  NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQT 108

Query: 73  ------ITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTN 109
                         TP + +++ Y    G +    +  +T   
Sbjct: 109 DVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQE 151

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           TL +R     D G Y C A N  G       L
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.8
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.71
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.64
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.44
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.42
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.36
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.33
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.29
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.28
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.2
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.2
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.18
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.17
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	99.17
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.16
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.13
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.12
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.11
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.1
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.1
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.1
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.09
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.08
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.07
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.07
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.07
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.05
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.03
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.02
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.02
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.02
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.02
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.01
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.01
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.0
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.0
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.0
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.0
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.99
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.99
2crz_A	110	Fibronectin type-III domain containing protein 3A;	98.99
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.98
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.97
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.97
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.97
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	98.96
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	98.96
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.96
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	98.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.95
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.95
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.95
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.95
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	98.95
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.95
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.94
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.94
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.94
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.94
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	98.94
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.94
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.93
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	98.93
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.93
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.92
1he7_A	126	High affinity nerve growth factor receptor; transf	98.92
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.92
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.92
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.91
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.91
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	98.91
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	98.91
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	98.9
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.9
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.9
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	98.9
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.9
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.89
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.89
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.89
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	98.89
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.89
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.88
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.88
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.87
2crm_A	120	Fibronectin type-III domain containing protein 3A;	98.87
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.87
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	98.87
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.87
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	98.87
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.87
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.86
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.86
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.86
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	98.86
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.86
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.86
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.86
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.85
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.84
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.84
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	98.84
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	98.83
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.83
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.83
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	98.83
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	98.83
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.83
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	98.83
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.83
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.83
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.82
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.82
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	98.81
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.81
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.81
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	98.81
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.81
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.81
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	98.81
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.8
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	98.8
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.8
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.8
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.8
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	98.8
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	98.8
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.8
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.79
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.79
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.79
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	98.79
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.79
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.79
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.78
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	98.78
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.78
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.78
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.78
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.78
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	98.78
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.78
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.78
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.77
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.77
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	98.77
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.77
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.76
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.76
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	98.76
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.76
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	98.76
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	98.76
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.75
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.75
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.75
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.75
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.75
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.74
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	98.74
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.74
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.74
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	98.74
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.74
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.73
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.73
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.73
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	98.73
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.73
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.73
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.72
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.72
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.72
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.72
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.71
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	98.71
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.71
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.71
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.71
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.71
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.71
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.7
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.7
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.7
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.7
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	98.7
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.7
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.7
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	98.7
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	98.7
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.7
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.69
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.69
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.69
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	98.69
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.68
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	98.68
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	98.67
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	98.67
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.67
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.67
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.67
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.67
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	98.67
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.67
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	98.67
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	98.66
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.66
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.66
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.66
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	98.65
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.65
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.65
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	98.65
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.65
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.65
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.64
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	98.64
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	98.64
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.64
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.64
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.64
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.64
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.63
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.63
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	98.63
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.63
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.63
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	98.63
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.63
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.62
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.62
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.62
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.62
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	98.62
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.61
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.61
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.61
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.61
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.61
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.61
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.61
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	98.6
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.6
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.6
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.6
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	98.6
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.59
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.59
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.59
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.59
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.59
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	98.58
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.58
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	98.58
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.58
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.57
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	98.57
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.57
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.57
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.57
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	98.56
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.56
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	98.56
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.56
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	98.56
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.55
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.55
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	98.55
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.55
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.55
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	98.54
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.54
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	98.54
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	98.54
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.54
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	98.54
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.54
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.54
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	98.53
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	98.53
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.53
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.53
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	98.53
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.53
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.53
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	98.52
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	98.52
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	98.52
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.51
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	98.51
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	98.51
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	98.5
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.5
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.5
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.49
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.49
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.49
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.48
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.48
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.47
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	98.47
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.47
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.47
3khq_A	133	B-cell antigen receptor complex-associated protei	98.47
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	98.46
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.46
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.46
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.46
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.46
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.45
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.45
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.45
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.44
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.44
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.43
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.43
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.43
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	98.42
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.42
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	98.42
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	98.42
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.41
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.41
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.41
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	98.4
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.4
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.4
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	98.4
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	98.4
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.39
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.38
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.38
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	98.38
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	98.38
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	98.38
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.37
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.37
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	98.37
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.36
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.35
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.35
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	98.35
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.35
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	98.34
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.34
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.33
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	98.33
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	98.33
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.33
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.32
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.32
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.31
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.31
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.31
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.31
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	98.3
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.28
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	98.27
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.27
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	98.27
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.27
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.27
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	98.27
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.26
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.26
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.26
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.26
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	98.26
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.26
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.26
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.25
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.25
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.25
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.25
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.25
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.25
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	98.24
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	98.24
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.23
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.23
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	98.22
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	98.22
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.22
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.22
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	98.22
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	98.21
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.21
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.21
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	98.21
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.21
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.2
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.2
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.2
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.2
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.19
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.19
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.18
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.17
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.16
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.16
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.16
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	98.15
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.14
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.13
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.13
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	98.13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.13
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	98.11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.11
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.11
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.1
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.1
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.1
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.1
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.06
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.06
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.05
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	98.05
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	98.05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.05
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	98.05
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.04
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	98.04
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.03
2erj_C	247	Cytokine receptor common gamma chain; immune syste	98.03
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.02
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.02
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	98.02
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.02
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.01
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.0
2ens_A	96	Advanced glycosylation END product-specific recept	98.0
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.0
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.0
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.0
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.0
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.0
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	97.99
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.99
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.99
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.99
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	97.99
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	97.97
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	97.97
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	97.96
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	97.96
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	97.96
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	97.95
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	97.95
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	97.95
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	97.95
1xt5_A	135	Variable region-containing chitin-binding protein	97.94
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.94
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	97.94
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	97.93
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	97.93
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	97.92
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.92
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.92
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	97.92
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	97.92
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	97.92
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.92
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.91
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.91
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	97.91
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	97.9
3kg5_A	134	B-cell antigen receptor complex-associated protei	97.9
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	97.9
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.9
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	97.89
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.89
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	97.89
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	97.88
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	97.88
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.88
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	97.88
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.88
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	97.88
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	97.88
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.87
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.86

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.80  E-value=2.1e-18  Score=126.89  Aligned_cols=131  Identities=15%  Similarity=0.196  Sum_probs=100.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecCCCCCCCCeEEEEEEec---CCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVS---SYT   81 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~---~~~   81 (152)
                      .++.+...+..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.  .+|.+|.....  .....++.|.|..+   ++.
T Consensus        65 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~--~~~~~~~~l~w~~p~~~~~~  142 (215)
T 3mtr_A           65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV--EPYSSTAQVQFDEPEATGGV  142 (215)
T ss_dssp             CSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEEEE--EEETTEEEEEEECCSCCCSS
T ss_pred             ccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcceEE--EEecceEEEEEecCCccCCC
Confidence            678888777789999999999999999999999999988865554  56776654321  23467899999854   456


Q ss_pred             CcceEEEEEEECCCCCCCc-----------ceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccccccccc
Q psy15979         82 PLEEFKIKYRKIPGNEPSP-----------MSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKRE  139 (152)
Q Consensus        82 pi~~y~~~~r~~~~~~~~~-----------~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~~~~  139 (152)
                      |+..|.++|+......+..           ..+   .|.+++.|+|||.|.|.+|.|+++....+...++|.
T Consensus       143 pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~~g  214 (215)
T 3mtr_A          143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVQG  214 (215)
T ss_dssp             CEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC---
T ss_pred             ceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccccC
Confidence            8999999999876543221           233   466699999999999999999999888777766653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.71  E-value=5.1e-16  Score=118.82  Aligned_cols=128  Identities=18%  Similarity=0.237  Sum_probs=98.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEce-eCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCceeecCCCCCCCCeEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRK-VVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVS   78 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~-v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~~~~~~~~~~~~~~~~L~W~~~   78 (152)
                      +|..+.++.+...+....|.|.+ ++.+|+|.|+|.|.|.+|.....+.|  ...|.||..... .....+++.|+|..+
T Consensus       144 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~v~l~w~~p  222 (305)
T 2nzi_A          144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKV-SDVSRDSVNLTWTEP  222 (305)
T ss_dssp             BCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEE-ESCCSSCEEEEEECC
T ss_pred             ECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCcee-eeccCCEEEEEEcCC
Confidence            45667788888777788999999 99999999999999999998886554  467776654321 123568999999964


Q ss_pred             ---CCCCcceEEEEEEECCCCCCC------cceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         79 ---SYTPLEEFKIKYRKIPGNEPS------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        79 ---~~~pi~~y~~~~r~~~~~~~~------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                         +..++..|.++++......+.      ...+.   |.+++.|+|||.|.|.+|.|+++...
T Consensus       223 ~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~  286 (305)
T 2nzi_A          223 ASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS  286 (305)
T ss_dssp             SCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCC
T ss_pred             ccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCC
Confidence               456889999999887544322      13343   55589999999999999999998754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.64  E-value=9.9e-15  Score=115.15  Aligned_cols=125  Identities=15%  Similarity=0.217  Sum_probs=94.1

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecCCCCCCCCeEEEEEEec---CCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVS---SYT   81 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~---~~~   81 (152)
                      .++.+...+..+.|.|.+++.+|+|.|+|+|.|..|.....+.|.  ..|.+|..... ......++.|.|..+   ++.
T Consensus       147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~-~~~~~~~~~l~w~~p~~~~g~  225 (389)
T 2jll_A          147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKI-IELSQTTAKVSFNKPDSHGGV  225 (389)
T ss_dssp             TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEE-EEECSSCEEEEEECCSCCTTS
T ss_pred             ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEE-eeccCCEEEEEEeCCCCCCCc
Confidence            478888777788999999999999999999999999988865554  56666532211 123457899999864   345


Q ss_pred             CcceEEEEEEECCCCCCC-------cceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         82 PLEEFKIKYRKIPGNEPS-------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        82 pi~~y~~~~r~~~~~~~~-------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      |+..|.++|+..+...+.       ...+.   |.+++.|+|+|.|.|.+|.|.++....+
T Consensus       226 pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~  286 (389)
T 2jll_A          226 PIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF  286 (389)
T ss_dssp             CEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred             ceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEE
Confidence            888999999987653321       13344   5559999999999999999998876533

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.44  E-value=4.8e-13  Score=114.83  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=83.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCc-eEE--EEEEecCCCCceeecCCCCCCCCeEEEEEEec---CCCCcceEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGK-HRA--YLELSGKPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKY   90 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~-~~~--~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~---~~~pi~~y~~~~   90 (152)
                      .++|.|.++++.|+|.|+|+|.|.+|. ...  .+.|..+|.|+..... .....+++.|.|..+   +..++..|.++|
T Consensus       222 ~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~-~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~  300 (731)
T 2v5y_A          222 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQL-ASVGATYLWIQLNANSINGDGPIVAREVEY  300 (731)
T ss_dssp             EEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEE-EEECSSCEEEECCCSSBSSCSCCCEEEEEE
T ss_pred             eEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcce-eccCCceEEEEeCCcccCCCCccEEEEEEE
Confidence            578999999999999999999999997 333  4566666654321100 123467899999874   346899999999


Q ss_pred             EECCCCC-----CCcceE---EecCCCeEEEEEEEE--cCCCCCCCCCCccc
Q psy15979         91 RKIPGNE-----PSPMSN---QLTGTNQYQNRRLVR--KRFDRGNSTNGGLI  132 (152)
Q Consensus        91 r~~~~~~-----~~~~~~---~L~~~~~Y~~rV~A~--N~~G~g~~s~~~~~  132 (152)
                      +......     .....+   .|.+++.|+|+|.|.  |..|.|.++....+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~  352 (731)
T 2v5y_A          301 CTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRT  352 (731)
T ss_dssp             EESSSSCEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEE
T ss_pred             EECCCCceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEe
Confidence            9864321     111334   456699999999999  99999998876543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.42  E-value=9.3e-13  Score=103.77  Aligned_cols=113  Identities=15%  Similarity=0.173  Sum_probs=80.1

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEe----cCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELS----GKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEF   86 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~----~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y   86 (152)
                      +....|.|.++.+.|.|.|+|.|.|.+|....+  +.+.    .+|.||.+...  ....+++.|+|..+  ++.++..|
T Consensus       249 ~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~~~--~~~~~~v~l~W~~p~~~~~~i~~Y  326 (389)
T 2jll_A          249 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQ--PSSGKSFKLSITKQDDGGAPILEY  326 (389)
T ss_dssp             TTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEEEE--EETTTEEEEEECCCCCCSSCCCEE
T ss_pred             CCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCccccc--cCcCCEEEEEEECCCCCCCcccEE
Confidence            345789999999999999999999999976542  2222    25666654321  23578999999974  35689999


Q ss_pred             EEEEEECCCCCCC--------cceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         87 KIKYRKIPGNEPS--------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        87 ~~~~r~~~~~~~~--------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .++|+......+.        ...+.   |.+++.|+|||.|.|..|.|+++..
T Consensus       327 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~  380 (389)
T 2jll_A          327 IVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY  380 (389)
T ss_dssp             EEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE
T ss_pred             EEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee
Confidence            9999985433211        13344   5569999999999999999998854

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.36  E-value=3.5e-12  Score=98.96  Aligned_cols=110  Identities=12%  Similarity=-0.066  Sum_probs=75.1

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCceeecCCCCCCCCeEEEEEEecCC-CCcceEEEEEEECC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-TPLEEFKIKYRKIP   94 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~-~pi~~y~~~~r~~~   94 (152)
                      +.|+|.+++.+|+|.|+|+|.|..+.....  +.+..+|.+|....-......+++.++|..+.. .....|.++|+...
T Consensus        61 ~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~  140 (313)
T 2d9q_B           61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSR  140 (313)
T ss_dssp             EEEEESCCCSSEEEEEEEEESSSSEEEEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECC
T ss_pred             EEEEEeccCCCccceEEeeecCCCceeEEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecC
Confidence            789999999999999999998766654433  444567777664421111125789999997542 12346999998764


Q ss_pred             CC------C-------CCcc--eEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         95 GN------E-------PSPM--SNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        95 ~~------~-------~~~~--~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..      .       ....  .+.   |.+++.|+|+|.|.|.+|.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~  191 (313)
T 2d9q_B          141 GNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSP  191 (313)
T ss_dssp             TTSCSCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECC
T ss_pred             CCcccCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCc
Confidence            21      0       0111  222   66799999999999999997543

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.33  E-value=1.7e-11  Score=94.52  Aligned_cols=116  Identities=9%  Similarity=-0.000  Sum_probs=78.4

Q ss_pred             cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-----EEEEecCCCCceeecCCCCCCCCeEEEEEEecCC-C
Q psy15979          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-----YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-T   81 (152)
Q Consensus         8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-----~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~-~   81 (152)
                      ++.+.+ +..+.|.|.+++++| |.|+|.|.|. |....     .+.+..+|.+|....-. .....++.|+|..+.. .
T Consensus        56 ~~~~~~-~~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~~P~~l~~~-~~~~~~v~l~W~~~~~~~  131 (303)
T 1i1r_A           56 QYTIIN-RTASSVTFTDIASLN-IQLTCNILTF-GQLEQNVYGITIISGLPPEKPKNLSCI-VNEGKKMRCEWDGGRETH  131 (303)
T ss_dssp             GCEEEE-TTEEEEEECSCCCSE-EEEEEEEEET-TTEEEEEEEEEEEEECCCCCCEEEEEE-EETTSCCEEEEECCSCCS
T ss_pred             heeeeC-CcEEEEEEcCcCCCc-eEEEEecccC-CCcceEEEEEEEeccCCCCCCeeeEEE-ECCCCcEEEEccCCCCCC
Confidence            555553 346789999999885 9999999884 54332     24455678777633211 1234789999997532 2


Q ss_pred             CcceEEEEEEECCCCC------C-CcceE---Ee-cCCCeEEEEEEEEcCCCCCCCC
Q psy15979         82 PLEEFKIKYRKIPGNE------P-SPMSN---QL-TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        82 pi~~y~~~~r~~~~~~------~-~~~~~---~L-~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+..|.++|+......      . ...++   .| .+++.|+|||.|.|.+|.|.++
T Consensus       132 ~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~  188 (303)
T 1i1r_A          132 LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD  188 (303)
T ss_dssp             SCCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECC
T ss_pred             CCcCEEEEEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccC
Confidence            3568999998653211      1 11233   35 6799999999999999999754

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.29  E-value=1e-11  Score=84.50  Aligned_cols=76  Identities=18%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC--------cceE---EecCCCeEEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS--------PMSN---QLTGTNQYQNRRLVR  118 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~--------~~~~---~L~~~~~Y~~rV~A~  118 (152)
                      ..|.||.+....  ...+++.|.|...  +++||..|.++|+......+.        ..++   .|.+++.|+|||.|.
T Consensus         7 ~~P~pP~~~~~~--~~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~   84 (114)
T 2kbg_A            7 REPSPPSIHGQP--SSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAA   84 (114)
T ss_dssp             CCCCSCCEECCB--CSTTCEEEEECCCCCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEE
T ss_pred             CCccCCcccccc--cCCCEEEEEEECCCCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEE
Confidence            467777665432  4679999999874  668999999999997543321        1234   466699999999999


Q ss_pred             cCCCCCCCCCC
Q psy15979        119 KRFDRGNSTNG  129 (152)
Q Consensus       119 N~~G~g~~s~~  129 (152)
                      |..|.|+|+..
T Consensus        85 N~~G~s~pS~~   95 (114)
T 2kbg_A           85 NRLGYSEPTVY   95 (114)
T ss_dssp             CTTSCEEEEEE
T ss_pred             eCCcCcCCcCC
Confidence            99999998864

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.28  E-value=1.5e-11  Score=90.83  Aligned_cols=115  Identities=13%  Similarity=0.036  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC---CCCCCCeEEEEEEecCCCCc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVSSYTPL   83 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~---~~~~~~~~~L~W~~~~~~pi   83 (152)
                      .++.+...++...|.|.+++.+|+|.|+|+|.|..|.....+.|...+.| .+...+   .......+.|.|.+.+.++.
T Consensus        58 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~-~~~~~~~~~~v~~g~~~~l~C~~~G~P~P  136 (203)
T 4fa8_A           58 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL-TLSVHSERSQFPDFSVLTVTCTVNAFPHP  136 (203)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE-EEEEEEEECCSSCSCCEEEEEEEEEESCC
T ss_pred             ceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCc-eeeecceeEEEcCCCEEEEEEEcCCCCCC
Confidence            45667667778899999999999999999999999999988777765433 222111   12246789999998775432


Q ss_pred             ceEEEEEEE--CCC----C-C-----CCcce------EEecCCCeEEEEEEEEcCCCCCC
Q psy15979         84 EEFKIKYRK--IPG----N-E-----PSPMS------NQLTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        84 ~~y~~~~r~--~~~----~-~-----~~~~~------~~L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                       ...|.+..  ...    . .     .++..      ...++.+.|.|  .|+|.+|..+
T Consensus       137 -~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC--~A~N~~G~a~  193 (203)
T 4fa8_A          137 -HVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC--VGKNDKEEAH  193 (203)
T ss_dssp             -EEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEE--EEESSSCEEE
T ss_pred             -EEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEE--EEEcCCCEEE
Confidence             34442211  000    0 0     11111      12345889998  8899999754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.22  E-value=7.5e-11  Score=98.43  Aligned_cols=124  Identities=14%  Similarity=0.227  Sum_probs=83.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC---CCCCCeEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVS   78 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~   78 (152)
                      +|..+.++.+..++..++|.|.+++.+|+|.|+|+|.|.+|.+.....|.... ||.+...+.   ......+.|.|.+.
T Consensus       424 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~-~P~~~~~~~~~~~~~g~~~~l~c~~~  502 (570)
T 3b43_A          424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA-PPRFVKKLSDISTVVGEEVQLQATIE  502 (570)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC-CCEEEECCCCBCCBTTCCEEEEEEEE
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEecc-CCcccccCCCceecCCCeEEEEEEEe
Confidence            46678899998877788999999999999999999999999998876665443 333332221   22467899999998


Q ss_pred             CCCCcceEEEEEE--ECCC-CC-------CCcceEEe-----cCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         79 SYTPLEEFKIKYR--KIPG-NE-------PSPMSNQL-----TGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        79 ~~~pi~~y~~~~r--~~~~-~~-------~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      +.+++ .+.|...  .... ..       .....+.|     .+.+.|.|  .|.|.+|..+.++.
T Consensus       503 g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~G~~~~~a~  565 (570)
T 3b43_A          503 GAEPI-SVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTC--QIKNEAGTQECFAT  565 (570)
T ss_dssp             SCSSC-CCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEE--EEECSSCEEEEEEE
T ss_pred             cCCCC-EEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEE--EEEECCcEEEEEEE
Confidence            76543 3444321  1111 11       01122333     44899998  78999998876543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.20  E-value=2e-10  Score=82.98  Aligned_cols=120  Identities=18%  Similarity=0.269  Sum_probs=79.0

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC--------------------CCCceeec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK--------------------PNPAIFRS   61 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~--------------------P~p~~~~~   61 (152)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|+|.|..|.....+.|.+.                    +.|+....
T Consensus        43 ~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  122 (212)
T 2r15_A           43 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG  122 (212)
T ss_dssp             ECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEB
T ss_pred             EccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCccccc
Confidence            4666789998887888889999999999999999999999999888877532                    12333322


Q ss_pred             CCC---CCCCCeEEEEEEecCCCCcceEEEEEEEC---CCCCC-------C-cceEEecC-----CCeEEEEEEEEcCCC
Q psy15979         62 HPQ---GRLPNSYNITWMVSSYTPLEEFKIKYRKI---PGNEP-------S-PMSNQLTG-----TNQYQNRRLVRKRFD  122 (152)
Q Consensus        62 ~~~---~~~~~~~~L~W~~~~~~pi~~y~~~~r~~---~~~~~-------~-~~~~~L~~-----~~~Y~~rV~A~N~~G  122 (152)
                      .+.   ......+.|.|.+.+.++. .+.| ++..   .....       . ...+.|..     .+.|.|  .|.|.+|
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~g  198 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVWGDPPP-EVSW-LKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL--VVKNKYG  198 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEECSSCC-EEEE-EETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEE--EEEETTE
T ss_pred             CCCcEEEccCCeEEEEEEEcCCCCc-eEEE-EECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEE--EEEcCCC
Confidence            111   1235789999998875443 3444 3321   11100       0 01333333     778988  6799998


Q ss_pred             CCC
Q psy15979        123 RGN  125 (152)
Q Consensus       123 ~g~  125 (152)
                      ...
T Consensus       199 ~~~  201 (212)
T 2r15_A          199 SET  201 (212)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            753

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.20  E-value=1.4e-11  Score=82.24  Aligned_cols=51  Identities=27%  Similarity=0.487  Sum_probs=45.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..++|+.+..++..++|.|.+++.+|+|.|+|+|+|.+|.+++++.|.+
T Consensus        53 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  103 (107)
T 3knb_B           53 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV  103 (107)
T ss_dssp             ECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            577889999988888899999999999999999999999999988766653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.17  E-value=5.2e-10  Score=80.47  Aligned_cols=118  Identities=14%  Similarity=0.215  Sum_probs=73.2

Q ss_pred             CCcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCceeecCCCCCCCCeEEEEEEecCC
Q psy15979          6 TERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (152)
Q Consensus         6 ~~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~   80 (152)
                      .+|+.+..   .....+|.|.+++.+|+|.|+|.|.|..|.....+.|  ..+|..+.............+.|.|.+...
T Consensus        69 ~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g  148 (214)
T 3jz7_A           69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEG  148 (214)
T ss_dssp             TTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBC
T ss_pred             ccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCC
Confidence            34555532   2246779999999999999999999999987776544  455544333222223346789999998433


Q ss_pred             CCcceEEEEEEECCCCC-C-------CcceEEecC-----CCeEEEEEEEEcCCCCCCC
Q psy15979         81 TPLEEFKIKYRKIPGNE-P-------SPMSNQLTG-----TNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        81 ~pi~~y~~~~r~~~~~~-~-------~~~~~~L~~-----~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .|...+.| ++...... .       ....+.|..     .+.|.|  .|.|.+|....
T Consensus       149 ~p~~~v~W-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~g~~~~  204 (214)
T 3jz7_A          149 SLPLQFEW-QKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSC--TVQNRVGSDQC  204 (214)
T ss_dssp             CSSCEEEE-EECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEE--EEECSSCEEEE
T ss_pred             CCCCEEEE-EECCCCCccCccceeccCCCEEEEecCCHHHCEEEEE--EEEcCCCcEEE
Confidence            34444554 33221111 1       112333333     788988  67999987643

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.17  E-value=1.6e-10  Score=74.85  Aligned_cols=76  Identities=17%  Similarity=0.373  Sum_probs=59.2

Q ss_pred             cCCCCc-eeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEEecC---CCeEEEEEEEEc
Q psy15979         52 GKPNPA-IFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQLTG---TNQYQNRRLVRK  119 (152)
Q Consensus        52 ~~P~p~-~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~L~~---~~~Y~~rV~A~N  119 (152)
                      +.|.|. .+...+.+. .++..|+|.+++.+||.+|++.||......        ....+|.|++   +..||+.|.+.|
T Consensus         4 ~~~gpa~v~is~~~s~-pdsh~iqW~~~s~s~I~eyiL~~R~k~~~g~Wke~~Ip~h~nSYtI~GL~P~~~YE~qv~S~~   82 (98)
T 1oww_A            4 GSSGPVEVFITETPSQ-PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQ   82 (98)
T ss_dssp             --CCCCEEECCCCSSC-TTCEEEEEECCSSSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEE
T ss_pred             CCCcceEEEecCCCCC-CCccceEEecCCCCCceEEEEEEEEcCCCCceeEEEecCccceEEEecCCCCcEEEEEEEEee
Confidence            467777 555444444 899999999999999999999999987643        1236776555   999999999999


Q ss_pred             CCCCCCCCC
Q psy15979        120 RFDRGNSTN  128 (152)
Q Consensus       120 ~~G~g~~s~  128 (152)
                      +||+.|.|-
T Consensus        83 ryG~~Evs~   91 (98)
T 1oww_A           83 QYGHQEVTR   91 (98)
T ss_dssp             SSSCEEEEE
T ss_pred             ccCcccceE
Confidence            999998873

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.16  E-value=1.3e-10  Score=77.40  Aligned_cols=57  Identities=21%  Similarity=0.374  Sum_probs=47.1

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE--EecCCCCce
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE--LSGKPNPAI   58 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~--v~~~P~p~~   58 (152)
                      +|..++|+.+......+.|.|.+++.+|+|.|+|+|.|..|.+...+.  |..+|.||.
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           47 QIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             BCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCC
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCCCC
Confidence            466678999987777889999999999999999999999998887544  446676553

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.13  E-value=4.7e-10  Score=80.36  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=64.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeecCCC---CCCCCeEEEEEEecCCCCcceEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIKY   90 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi~~y~~~~   90 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|....   .+.|...|   .+...+.   ......+.|.|.+.+.++...+.|. 
T Consensus        67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p---~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~-  142 (195)
T 2c5d_C           67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLP---YFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL-  142 (195)
T ss_dssp             EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSC---EEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEE-
T ss_pred             ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCC---eEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEE-
Confidence            578999999999999999999999887544   34444433   2222111   1235789999999776443245543 


Q ss_pred             EECCCCCC-----CcceEE---ecCCCeEEEEEEEEcCCCCCC
Q psy15979         91 RKIPGNEP-----SPMSNQ---LTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        91 r~~~~~~~-----~~~~~~---L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      +....-..     ....+.   +++.+.|.|  .|.|.+|...
T Consensus       143 ~~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C--~a~N~~g~~~  183 (195)
T 2c5d_C          143 QDAVPLATAPGHGPQRSLHVPGLNKTSSFSC--EAHNAKGVTT  183 (195)
T ss_dssp             ESSCBSSSSTTSSCCEEEEECCCSSCEEEEE--EEEETTEEEE
T ss_pred             ECCEeccCCCCcCCCCeEEEcccccCceEEE--EEEcCCCceE
Confidence            32211110     122233   344788988  7799999764

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.12  E-value=9.7e-10  Score=80.91  Aligned_cols=121  Identities=12%  Similarity=0.138  Sum_probs=73.9

Q ss_pred             cccCCCcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cC------------------CCCcee
Q psy15979          2 RLETTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GK------------------PNPAIF   59 (152)
Q Consensus         2 ~l~~~~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~------------------P~p~~~   59 (152)
                      +|..++|+.+..++  ...+|.|.+++.+|+|.|+|.|.|  |.+...+.+.  +.                  ..+|.+
T Consensus        43 ~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~  120 (207)
T 3rbs_A           43 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF  120 (207)
T ss_dssp             EECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred             ECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCce
Confidence            56677888886544  556899999999999999999999  6655544331  10                  013333


Q ss_pred             ecCC--CCCCCCeEEEEEEecCCCCcceEEEEEEE---CCCC-C--C--CcceEEec-----CCCeEEEEEEEEcCCCCC
Q psy15979         60 RSHP--QGRLPNSYNITWMVSSYTPLEEFKIKYRK---IPGN-E--P--SPMSNQLT-----GTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        60 ~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~~~r~---~~~~-~--~--~~~~~~L~-----~~~~Y~~rV~A~N~~G~g  124 (152)
                      ....  .......+.|.|.+.+..|...+.| ++.   .... .  .  ....+.|.     +.+.|.|  .|.|.+|..
T Consensus       121 ~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W-~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C--~a~N~~G~~  197 (207)
T 3rbs_A          121 VEYLSWEVTGECNVLLKCKVANIKKETHIVW-YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV--ILKDDRGKD  197 (207)
T ss_dssp             EEEEEEEEETTTEEEEEEEEESCCTTCEEEE-EETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEE--EEEETTEEE
T ss_pred             EecCCcEEcCCCcEEEEEEEeCCCCCCEEEE-EECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEE--EEEcCCCEE
Confidence            2111  1123678999999877634445555 332   1111 1  1  11223333     3899988  789999976


Q ss_pred             CCC
Q psy15979        125 NST  127 (152)
Q Consensus       125 ~~s  127 (152)
                      ..+
T Consensus       198 ~~~  200 (207)
T 3rbs_A          198 KSR  200 (207)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.11  E-value=2.6e-10  Score=82.26  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=71.2

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCC----ceEEEEEEecCCCCceeecCCC--CCCCCeEEEEEEecCCCCcceEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMG----KHRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G----~~~~~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      .....|.|.+++.+|+|.|+|.|.|..|    +....+.|.+.+.+|.+...+.  ......++|.|.+.+. + ..|.|
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~~w  132 (196)
T 3p2t_A           55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-M-DTFLL  132 (196)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-E-EEEEE
T ss_pred             CceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-C-CEEEE
Confidence            4568899999999999999999999998    2333566665555555443221  1246789999988653 2 23443


Q ss_pred             EEEECCCCCCC-----------cceEEe-----cCCCeEEEEEEEEcCCC---CCCCCCCccc
Q psy15979         89 KYRKIPGNEPS-----------PMSNQL-----TGTNQYQNRRLVRKRFD---RGNSTNGGLI  132 (152)
Q Consensus        89 ~~r~~~~~~~~-----------~~~~~L-----~~~~~Y~~rV~A~N~~G---~g~~s~~~~~  132 (152)
                       ++........           ...+.|     .+.+.|.|  .|.|.+|   ++.+++...+
T Consensus       133 -~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~~~~~~s~~S~~~~l  192 (196)
T 3p2t_A          133 -CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC--FSSHGFSHYLLSHPSDPLEL  192 (196)
T ss_dssp             -EETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEE--EEECGGGTTEECCCCCCEEE
T ss_pred             -EeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEE--EEEcCCCCcccCCCCCCEEE
Confidence             3322111000           112333     34899999  7899988   5666665543

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.10  E-value=5e-10  Score=81.64  Aligned_cols=117  Identities=14%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEe---c-CCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEE
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHRAY--LELS---G-KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKY   90 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~---~-~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~   90 (152)
                      .+.|.++.+...-.|.+.|.|..|....+  +.+.   . .|.+|.... ......+++.|+|..+  .+.++..|.|+|
T Consensus        69 ~~~i~~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~-~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~  147 (209)
T 2vkw_A           69 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEG-QMGEDGNSIKVNLIKQDDGGSPIRHYLVRY  147 (209)
T ss_dssp             EEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEE-EECTTSSCEEEEEECCCCTTSCCCEEEEEE
T ss_pred             eEEeCCCCCCCeEEEEEEEEcCCcccCCcccccccccCCCCCCCCcccc-cccccCCeEEEEEECcccCCCCCceEEEEE
Confidence            67899999999999999999999865432  2222   1 455544321 1134568999999986  456899999999


Q ss_pred             EECCCCC------C-CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccccccc
Q psy15979         91 RKIPGNE------P-SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKA  136 (152)
Q Consensus        91 r~~~~~~------~-~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~  136 (152)
                      +......      . ...++.   |.+++.|+|+|.|.|..|.|+++....+..++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~~  203 (209)
T 2vkw_A          148 RALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAA  203 (209)
T ss_dssp             EETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC--
T ss_pred             ECCCCCCceeeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhhh
Confidence            9832211      1 113444   55599999999999999999998766554443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.10  E-value=1.1e-09  Score=78.83  Aligned_cols=119  Identities=13%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCC--ceEE--EEEEecCCCCceeecCCCCCCCCeEEEEEE-ecCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRA--YLELSGKPNPAIFRSHPQGRLPNSYNITWM-VSSY   80 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G--~~~~--~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~-~~~~   80 (152)
                      +.|+.+..    ..|.|.+++.+|+|.|+|.|.|..|  ....  .+.|..+|..+.............+.|.|. ..+.
T Consensus        57 ~~r~~~~~----~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  132 (212)
T 1f97_A           57 ADRVTFSS----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGS  132 (212)
T ss_dssp             TTTEEEET----TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCB
T ss_pred             cCcEEeec----eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCc
Confidence            56777652    6899999999999999999999988  3333  344555555443332211223578999999 4554


Q ss_pred             CCcceEEEEEEECC----CCC--------------CCcceEEe-----cCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         81 TPLEEFKIKYRKIP----GNE--------------PSPMSNQL-----TGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        81 ~pi~~y~~~~r~~~----~~~--------------~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ++ ..+.|. +...    ...              .....+.|     .+.+.|.|  .|.|.+|....+....+
T Consensus       133 p~-~~i~W~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~s~~~~l  203 (212)
T 1f97_A          133 PP-SEYSWF-KDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC--QAQNGYGTAMRSEAAHM  203 (212)
T ss_dssp             SC-CEEEEE-ETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEE--EEECSSSCCEECCCEEE
T ss_pred             CC-CEEEEE-eCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEE--EEccccCCccccceEEE
Confidence            43 345443 3211    100              00122333     33778988  77999998755554433

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.10  E-value=3.2e-10  Score=80.71  Aligned_cols=120  Identities=19%  Similarity=0.272  Sum_probs=75.3

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC-----CCCCCCeEEEEEE
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP-----QGRLPNSYNITWM   76 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~-----~~~~~~~~~L~W~   76 (152)
                      +|..+.++.+...+...+|.|.+++.+|+|.|+|.|.|..|.....+.|.....|......+     .......+.|.|.
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~  126 (197)
T 3lcy_A           47 ELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM  126 (197)
T ss_dssp             EECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEE
T ss_pred             ECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEE
Confidence            35567888888888888999999999999999999999999887765554221111110000     0123578899999


Q ss_pred             ecCCCCcceEEEEEEEC---CCCCC-----Cc--ceEEe------cCCCeEEEEEEEEcCCCCCC
Q psy15979         77 VSSYTPLEEFKIKYRKI---PGNEP-----SP--MSNQL------TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        77 ~~~~~pi~~y~~~~r~~---~~~~~-----~~--~~~~L------~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      +.+.++. .+.| ++..   .....     ..  ..+.|      ++.+.|.|  .|.|.+|...
T Consensus       127 ~~~~p~p-~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C--~a~n~~g~~~  187 (197)
T 3lcy_A          127 YIGRPVP-AMTW-FHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV--QLSNVFGTVD  187 (197)
T ss_dssp             EEEESCC-EEEE-EETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEE--EEECSSCEEE
T ss_pred             EeeeeCC-eeEE-eECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEE--EEEcCcCceE
Confidence            8765443 3444 3321   11110     00  12222      34788988  6799999763

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.09  E-value=1.5e-10  Score=76.16  Aligned_cols=47  Identities=26%  Similarity=0.274  Sum_probs=41.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +.|+.+...+..++|.|.+++.+|+|.|+|+|+|.+|.+++.+.|.+
T Consensus        51 ~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   97 (100)
T 3knb_A           51 QGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI   97 (100)
T ss_dssp             GGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            35788888888899999999999999999999999999988776653

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.08  E-value=2.6e-10  Score=76.73  Aligned_cols=66  Identities=12%  Similarity=0.078  Sum_probs=51.3

Q ss_pred             CCeEEEEEEec--CCCCcceEEEEEEECCCCCCC---------cceEE---ecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         68 PNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS---------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        68 ~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~---------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      .+++.|+|..+  ++.+|..|.|+|+.. ...+.         ...+.   |.+++.|+|||.|.|..|.|+||+...+.
T Consensus        20 ~~sv~L~W~pP~~~~~~I~gY~vey~~~-~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~n~~G~s~pS~~~~v~   98 (108)
T 1v5j_A           20 PRGVLLHWDPPELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS   98 (108)
T ss_dssp             SSSEEEEEECCSCCSSCCCBEEEEEEET-TCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEETTEEEEECSCCCCC
T ss_pred             CCEEEEEECCCCCCCCCCcEEEEEEEeC-CCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEEcCCCCcCCCCCEEEE
Confidence            57899999986  456899999999983 33221         13443   55699999999999999999999877665


Q ss_pred             c
Q psy15979        134 P  134 (152)
Q Consensus       134 ~  134 (152)
                      .
T Consensus        99 T   99 (108)
T 1v5j_A           99 T   99 (108)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.08  E-value=3.4e-09  Score=82.70  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=74.8

Q ss_pred             EeEEEEceeC-CCCCEEEEEEEEcCCCceEE---EEEEe--cCCCCceeecC-CCCCCCCeEEEEEEecC----CCCcce
Q psy15979         17 RHTLMIRKVV-ASDFGNYSCEATNPMGKHRA---YLELS--GKPNPAIFRSH-PQGRLPNSYNITWMVSS----YTPLEE   85 (152)
Q Consensus        17 ~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~---~~~v~--~~P~p~~~~~~-~~~~~~~~~~L~W~~~~----~~pi~~   85 (152)
                      ...+.|..+. ......+.|.|.|.+|....   .+.+.  .+|.||..... .......++.|+|..+.    ..++..
T Consensus       154 ~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~  233 (325)
T 1n26_A          154 KFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR  233 (325)
T ss_dssp             EEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEE
T ss_pred             CEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEE
Confidence            3456676654 34556668999999998653   23222  46777754321 12223468999999863    246789


Q ss_pred             EEEEEEECCCCCCC-------cceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         86 FKIKYRKIPGNEPS-------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        86 y~~~~r~~~~~~~~-------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      |.|+|+......+.       ...+.   |.+++.|+|||+|.|.+|.|.+|.
T Consensus       234 Y~V~yr~~~~~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~  286 (325)
T 1n26_A          234 FELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSE  286 (325)
T ss_dssp             EEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCC
T ss_pred             EEEEEEeCCCCCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcC
Confidence            99999987654322       13344   556999999999999999776654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.07  E-value=2.2e-09  Score=78.16  Aligned_cols=117  Identities=18%  Similarity=0.208  Sum_probs=72.6

Q ss_pred             cCCEeEEEEcee-CCCCCEEEEEEEEcCCCceEEEEEEe--cC----CCCceeecCCCC---CCCCeEEEEEEecCCCCc
Q psy15979         14 RGSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLELS--GK----PNPAIFRSHPQG---RLPNSYNITWMVSSYTPL   83 (152)
Q Consensus        14 ~~~~~~L~I~~v-~~~D~G~YtC~A~N~~G~~~~~~~v~--~~----P~p~~~~~~~~~---~~~~~~~L~W~~~~~~pi   83 (152)
                      .+....|.|.++ +.+|+|.|+|.|.|..|.....+.|.  ..    |.+|.+...+..   .....+.|.|.+.+.++.
T Consensus        59 ~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p  138 (212)
T 2yd6_A           59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP  138 (212)
T ss_dssp             GGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC
T ss_pred             CCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC
Confidence            345778999999 59999999999999999987765554  22    222343332211   135789999999776443


Q ss_pred             ceEEEEEEEC---CCCC--C--------CcceEEe-----cCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         84 EEFKIKYRKI---PGNE--P--------SPMSNQL-----TGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        84 ~~y~~~~r~~---~~~~--~--------~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                       .+.| ++..   ....  .        ....+.|     .+.+.|.|  .|.|.+|....+...+.+.
T Consensus       139 -~v~W-~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          139 -EITW-FKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC--VATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             -EEEE-EETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEE--EEEETTEEEECCCEEEEEE
T ss_pred             -eEEE-EECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEE--EEECCCCccccccccEEEE
Confidence             3444 3321   1100  0        0122233     33788988  7799999887776554433

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.07  E-value=1.1e-09  Score=92.06  Aligned_cols=124  Identities=15%  Similarity=0.165  Sum_probs=78.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeecCCC-CCCCCeEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHPQ-GRLPNSYNITWMV   77 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~   77 (152)
                      +|..+.|+.+...  ++.|.|.+++.+|+|.|+|.|.|..|...+   .+.|...|..+....... ......+.|.|.+
T Consensus       506 ~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~  583 (642)
T 1e07_A          506 SLPVSPRLQLSNG--NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS  583 (642)
T ss_pred             eCCCCCcEEEcCC--CcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEe
Confidence            4566677777533  468999999999999999999999998644   344444443222211111 1235789999999


Q ss_pred             cCCCCcceEEEEEEECCCCCCCcceE-----EecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         78 SSYTPLEEFKIKYRKIPGNEPSPMSN-----QLTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        78 ~~~~pi~~y~~~~r~~~~~~~~~~~~-----~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      .+.++. .+.|.. . +..-.....+     ...+.+.|.|  .|.|.+|....+....+
T Consensus       584 ~g~p~p-~v~W~~-~-g~~i~~~~~L~i~~~~~~d~G~Y~C--~a~N~~G~~~~s~~l~V  638 (642)
T 1e07_A          584 ASNPSP-QYSWRI-N-GIPQQHTQVLFIAKITPNNNGTYAC--FVSNLATGRNNSIVKSI  638 (642)
T ss_pred             ccCCCC-eEEEEE-C-CEECccCceEEECcccccCCeEEEE--EEEecccCcceeEEEEE
Confidence            876544 455432 1 1111111222     3444888988  88999998866654444

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.07  E-value=1.8e-09  Score=76.89  Aligned_cols=114  Identities=21%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecCCC---CCCCCeEEEEEEecCCCC
Q psy15979          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTP   82 (152)
Q Consensus         8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~p   82 (152)
                      ++.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|.  ..+.||.+...+.   ......+.|.|.+.+.++
T Consensus        53 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~  132 (194)
T 2a38_A           53 GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT  132 (194)
T ss_dssp             TCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESC
T ss_pred             ceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecC
Confidence            56665556778999999999999999999999999888765444  4444554443221   123578899999876544


Q ss_pred             cceEEEEEEEC---CCCCC------Cc-ceEE-----ecCCCeEEEEEEEEcCCCCCC
Q psy15979         83 LEEFKIKYRKI---PGNEP------SP-MSNQ-----LTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        83 i~~y~~~~r~~---~~~~~------~~-~~~~-----L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      . .+.| ++..   .....      .. ..+.     ..+.+.|.|  .|.|.+|...
T Consensus       133 ~-~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~  186 (194)
T 2a38_A          133 P-VVKF-YRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV--NATNSVGRAT  186 (194)
T ss_dssp             C-EEEE-EETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEE--EEEETTEEEE
T ss_pred             C-eEEE-EECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEE--EEEeCCCceE
Confidence            3 3444 3321   11100      00 0222     234788988  6789998753

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.07  E-value=8.6e-09  Score=75.05  Aligned_cols=118  Identities=9%  Similarity=0.025  Sum_probs=82.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEE-----EEEe-cC----CCCceeecCCCCCCCCeEEEEEEec---CCCCc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----LELS-GK----PNPAIFRSHPQGRLPNSYNITWMVS---SYTPL   83 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-----~~v~-~~----P~p~~~~~~~~~~~~~~~~L~W~~~---~~~pi   83 (152)
                      ...+.|.++.+...-.|.+.|.|..|.....     +.+. +.    |.+|.... ......+++.|.|..+   ...++
T Consensus        69 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~-~~~~~~~sv~l~W~~p~~~~~~~i  147 (214)
T 2ibg_A           69 SFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLE-IEEYSETAVVLHWSLASDADEHLI  147 (214)
T ss_dssp             EEEEEECSCCTTCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECC-CBCCSSSCEEEEEECCTTCCGGGC
T ss_pred             ceeEEecCCcCCCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccE-EEEccCCeEEEEEeCCCccCCCCc
Confidence            4467899999998899999999999976543     2221 21    22233221 1223468899999986   34678


Q ss_pred             ceEEEEEEECCC-CCCC--------cceEE---ecCCCeEEEEEEEEcCCCCCCCCCCcccccc
Q psy15979         84 EEFKIKYRKIPG-NEPS--------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVPK  135 (152)
Q Consensus        84 ~~y~~~~r~~~~-~~~~--------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~  135 (152)
                      ..|.++|+.... ..+.        ...+.   |.+++.|.|||.|.|..|.|.++....+.++
T Consensus       148 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  211 (214)
T 2ibg_A          148 TGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ  211 (214)
T ss_dssp             CEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECC
T ss_pred             ceEEEEEEECCCCcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEec
Confidence            999999998765 2211        23444   5559999999999999999999987765543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.07  E-value=1.7e-09  Score=79.01  Aligned_cols=109  Identities=14%  Similarity=0.161  Sum_probs=68.0

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecCCCCCCCCeEEEEEEecCCCCcc--eEEEE
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLE--EFKIK   89 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~--~y~~~   89 (152)
                      .+..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.  ..|..+.+........+..+.|.|.+.+..|..  .+.| 
T Consensus        50 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W-  128 (202)
T 1vca_A           50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL-  128 (202)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEE-
T ss_pred             cCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEE-
Confidence            34567899999999999999999999999877655554  455433333222223467899999987654432  2333 


Q ss_pred             EEECC-------CCCC-----C--cceEEecC-----CCeEEEEEEEEcCCCCCC
Q psy15979         90 YRKIP-------GNEP-----S--PMSNQLTG-----TNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        90 ~r~~~-------~~~~-----~--~~~~~L~~-----~~~Y~~rV~A~N~~G~g~  125 (152)
                      ++...       ....     .  ...+.+..     ++.|.|  .|.|..|..+
T Consensus       129 ~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC--~A~n~~~~~~  181 (202)
T 1vca_A          129 LKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVC--RAKLHIDEMD  181 (202)
T ss_dssp             EETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEE--EEEECSCCCT
T ss_pred             EeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEE--EEEccccCCC
Confidence            32210       0000     0  11223332     778999  6799988764

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2.2e-10  Score=75.33  Aligned_cols=54  Identities=19%  Similarity=0.290  Sum_probs=45.9

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN   55 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~   55 (152)
                      +|..++|+.+..++..+.|.|.+++.+|+|.|+|+|.|...+..+.+.|..+|.
T Consensus        45 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           45 PVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS   98 (100)
T ss_dssp             ECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSSCCCEEEEEEEECCSC
T ss_pred             ECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCCCeeEEEEEEEeCCCC
Confidence            567789999998888889999999999999999999999666666777766653

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.06  E-value=6e-10  Score=79.82  Aligned_cols=109  Identities=12%  Similarity=0.079  Sum_probs=69.5

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce--EEEEE--EecCCCCceeecCCCCCCCCeEEEEEEecCC
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLE--LSGKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~~~--v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~   80 (152)
                      .++|+.+..+   ++|.|.+++.+|+|.|+|.|.|..|..  +..+.  |...+.+|.+..     ....+.|.|.+.+.
T Consensus        51 ~~~r~~~~~~---gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~~-----~~~~v~L~C~~~g~  122 (176)
T 1hng_A           51 KSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW-----ECSNATLTCEVLEG  122 (176)
T ss_dssp             SSTTEEECTT---SCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCEEEE-----ETTTTEEEEECSSC
T ss_pred             CCCeEEECCC---CcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCEEEe-----cCCcEEEEEEecCC
Confidence            4678888433   359999999999999999999999987  44444  444444344332     12348899988776


Q ss_pred             CCcceEEEEEEECCCCC---CC-c-ceEEecCCCeEEEEEEEEcCCCCCCC
Q psy15979         81 TPLEEFKIKYRKIPGNE---PS-P-MSNQLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        81 ~pi~~y~~~~r~~~~~~---~~-~-~~~~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ++ ..+.|. +. +..-   .. . ......+.+.|.|  .|.|.+|....
T Consensus       123 p~-p~i~W~-~~-g~~l~~~~~~~i~~~~~~d~G~Y~C--~a~N~~g~~~~  168 (176)
T 1hng_A          123 TD-VELKLY-QG-KEHLRSLRQKTMSYQWTNLRAPFKC--KAVNRVSQESE  168 (176)
T ss_dssp             SS-CEEEEE-ET-TEEEEEESSSEEEEECSCCSSCEEE--EEEETTEEEEE
T ss_pred             CC-cEEEEE-EC-CEECCCCCcEEEEEEEccCCeEEEE--EEEecCCCcee
Confidence            54 345543 21 1000   00 0 1223455899999  78999997643

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.05  E-value=8.3e-10  Score=92.10  Aligned_cols=123  Identities=18%  Similarity=0.289  Sum_probs=79.3

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC---CCCCCeEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVS   78 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~   78 (152)
                      +|..+.++.+...+....|.|.+++.+|+|.|+|+|.|..|.+.....|.... ||.+...+.   ......+.|.|.+.
T Consensus       331 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-~P~~~~~~~~~~~~~G~~v~l~C~~~  409 (570)
T 3b43_A          331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECELQ  409 (570)
T ss_dssp             ECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC-CCEECSCCCCEEECTTCCEEEEEEEE
T ss_pred             ECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC-CCeeecCCCceeecCCCEEEEEEEEe
Confidence            45667788877666788999999999999999999999999998876665432 223322221   12357899999998


Q ss_pred             CCCCcceEEEEE--EECCCCCC-------CcceEEe-----cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         79 SYTPLEEFKIKY--RKIPGNEP-------SPMSNQL-----TGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        79 ~~~pi~~y~~~~--r~~~~~~~-------~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      +.++. .+.|..  +.......       ...++.|     ++.+.|.|  .|.|.+|....+.
T Consensus       410 g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C--~A~N~~G~~~~~~  470 (570)
T 3b43_A          410 GTPPF-QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC--KASNDVGSDTCVG  470 (570)
T ss_dssp             SSSSC-CCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEE--EEECSSCEEEEEE
T ss_pred             cCCCC-EEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEE--EEEECCCeEEEEE
Confidence            76543 344422  11111110       0012223     33788988  7899999765443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.05  E-value=1.1e-10  Score=85.83  Aligned_cols=110  Identities=16%  Similarity=0.138  Sum_probs=65.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~   95 (152)
                      +..+|.|.+++.+|+|.|+|+|.|..|..+..+.+...+.+..............+.|.|.+.+..|...+.| ++..+.
T Consensus        81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W-~k~~~~  159 (226)
T 4f80_A           81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQW-SNNKGE  159 (226)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEE-ECTTSC
T ss_pred             CeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEE-EECCce
Confidence            4678999999999999999999999999988877765443221111111123577888888766434334444 322111


Q ss_pred             CC---------CCc------ceEEe--cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         96 NE---------PSP------MSNQL--TGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        96 ~~---------~~~------~~~~L--~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ..         ...      ....+  ++.+.|.|  .|.|.+|..+.+.
T Consensus       160 ~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC--~a~N~~g~~~~~~  207 (226)
T 4f80_A          160 NIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSC--TIRSSLLGLEKTA  207 (226)
T ss_dssp             BCCCEECCCEECTTSCEEEEEEEEECC----CEEE--EEEETTTTEEEEE
T ss_pred             EcCCCceEEEECCCCcEEEEEEEEechhcCcEEEE--EEEeCCCCeEEEE
Confidence            00         000      11233  34788998  6799998665443

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=8.4e-10  Score=73.63  Aligned_cols=70  Identities=11%  Similarity=0.135  Sum_probs=52.9

Q ss_pred             CCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         66 RLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        66 ~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ...+++.|.|..+.  +.+|..|.|+|+......+.      ...+   .|.+++.|+|||.|.|..|.|+++....+..
T Consensus        22 ~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T  101 (110)
T 2db8_A           22 THNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQT  101 (110)
T ss_dssp             CSSSEEEECCBCCTTCCSCCSEEEEEECCSSSSCCEEEEEESCSCEEEECCCSSSCCEEEEEEECSSCBCCCCSCEECCC
T ss_pred             cCCCEEEEEECCCCCCCCCccEEEEEEEeCCCCceEEEEeCCcCEEEECCCCCCCEEEEEEEEEeCCcCCCCCCCEEEEc
Confidence            35799999999864  36899999999876433321      1233   4667999999999999999999998765544


Q ss_pred             c
Q psy15979        135 K  135 (152)
Q Consensus       135 ~  135 (152)
                      .
T Consensus       102 ~  102 (110)
T 2db8_A          102 S  102 (110)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.03  E-value=2.3e-09  Score=80.77  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=76.0

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC---CCCCCeEEEEEEecC
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSS   79 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~   79 (152)
                      |..+.++.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|.....| .+...+.   ......+.|.|.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p-~~~~~~~~~~~~~g~~v~l~C~~~g  218 (284)
T 2rik_A          140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP-VFRKKPHPVETLKGADVHLECELQG  218 (284)
T ss_dssp             CCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCC-BCCSCCCCEEECTTCCEEEEEECBS
T ss_pred             CcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCC-cceeCCCcceecCCCeEEEEEEEEe
Confidence            455667777666778899999999999999999999999998887665533222 1111111   123578999999887


Q ss_pred             CCCcceEEEEEE--ECCCCCC-------CcceEEe-----cCCCeEEEEEEEEcCCCCCCCC
Q psy15979         80 YTPLEEFKIKYR--KIPGNEP-------SPMSNQL-----TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        80 ~~pi~~y~~~~r--~~~~~~~-------~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .++ ..+.|...  .......       ....+.|     .+.+.|.|  .|.|.+|....+
T Consensus       219 ~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~  277 (284)
T 2rik_A          219 TPP-FQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC--KASNDVGSYTCV  277 (284)
T ss_dssp             SSC-CEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEE--EEEETTEEEEEE
T ss_pred             cCC-CEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEE--EEEeCCCceeEE
Confidence            654 34444321  1111100       0012233     33778988  679999976433

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.02  E-value=4.3e-09  Score=75.86  Aligned_cols=112  Identities=12%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceE----EEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHR----AYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~----~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      .....|.|.+++.+|+|.|+|.|.|..|...    ..+.|...+.+|.+...+  .......+.|.|.+.+.+  ..+.|
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p--~~~~W  132 (196)
T 2d3v_A           55 KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF--DRFIL  132 (196)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC--SEEEE
T ss_pred             ccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC--CEEEE
Confidence            4578899999999999999999999987433    356666644444444322  122467899999987654  34444


Q ss_pred             EEEECCCCC---------C-C--cceEEe-----cCCCeEEEEEEEEcCCC---CCCCCCCcc
Q psy15979         89 KYRKIPGNE---------P-S--PMSNQL-----TGTNQYQNRRLVRKRFD---RGNSTNGGL  131 (152)
Q Consensus        89 ~~r~~~~~~---------~-~--~~~~~L-----~~~~~Y~~rV~A~N~~G---~g~~s~~~~  131 (152)
                       ++....-.         . .  ...+.|     ++.+.|.|  .|.|..+   ++.+++...
T Consensus       133 -~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C--~a~n~~~~~~~s~~S~~~~  192 (196)
T 2d3v_A          133 -TEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC--YGSRRHILQVWSEPSDLLE  192 (196)
T ss_dssp             -EEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEE--EEEETTEEEEECCCCCCEE
T ss_pred             -EccCCcccccccccccccCCCceeEEEeeecCcccCeeEEE--EEEccCCCCccCCCCccEE
Confidence             33221110         0 0  123333     33889999  6788776   566665543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.02  E-value=7.7e-09  Score=78.80  Aligned_cols=120  Identities=17%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC--------------------CCCceeec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK--------------------PNPAIFRS   61 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~--------------------P~p~~~~~   61 (152)
                      +|..++++.+...+....|.|.+++.+|+|.|+|+|.|..|.....+.|.+.                    +.|.....
T Consensus       148 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  227 (317)
T 2y25_A          148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG  227 (317)
T ss_dssp             BCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEB
T ss_pred             ECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCccccc
Confidence            4666788988888888889999999999999999999999999988777532                    12222221


Q ss_pred             CCC---CCCCCeEEEEEEecCCCCcceEEEEEEECC---CCC-----C--C-cceEEe-----cCCCeEEEEEEEEcCCC
Q psy15979         62 HPQ---GRLPNSYNITWMVSSYTPLEEFKIKYRKIP---GNE-----P--S-PMSNQL-----TGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        62 ~~~---~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~---~~~-----~--~-~~~~~L-----~~~~~Y~~rV~A~N~~G  122 (152)
                      .+.   ......+.|.|.+.+.++. .+.| ++...   ...     .  . ...+.|     .+.+.|.|  .|.|.+|
T Consensus       228 ~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W-~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~g  303 (317)
T 2y25_A          228 LPDVVTIQEGKALNLTCNVWGDPPP-EVSW-LKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGL--VVKNKYG  303 (317)
T ss_dssp             CCSEEEEETTSBBCEEEEEECSSCC-EEEE-EESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEE--EEEETTE
T ss_pred             CCccEEEEcCCEEEEEEEEecCCCC-EEEE-EECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEE--EEEeCCC
Confidence            111   1235788999998766443 3444 33211   110     0  1 013333     33778988  7799999


Q ss_pred             CCC
Q psy15979        123 RGN  125 (152)
Q Consensus       123 ~g~  125 (152)
                      ...
T Consensus       304 ~~~  306 (317)
T 2y25_A          304 SET  306 (317)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            764

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.02  E-value=1.9e-09  Score=76.15  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             ccCCCcEEEEEcCC--EeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeecCCC---CCCCCeEEEE
Q psy15979          3 LETTERRIMETRGS--RHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHPQ---GRLPNSYNIT   74 (152)
Q Consensus         3 l~~~~r~~i~~~~~--~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~~---~~~~~~~~L~   74 (152)
                      |..+.++.+...+.  .+.|.|.+++.+|+|.|+|.|.|..|....   .+.|..+|.   +...+.   ......+.|.
T Consensus        43 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~---~~~~~~~~~~~~g~~~~l~  119 (182)
T 1rhf_A           43 VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPF---FTVEPKDLAVPPNAPFQLS  119 (182)
T ss_dssp             CCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCE---EEECCCCEEECTTCCEEEE
T ss_pred             cCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCe---EEecCcceEecCCCEEEEE
Confidence            34444555543322  478999999999999999999999886442   445544432   221111   1235789999


Q ss_pred             EEecCCCCcceEEEEEEECCCCCC--CcceE---EecCCCeEEEEEEEEcCCCCCC
Q psy15979         75 WMVSSYTPLEEFKIKYRKIPGNEP--SPMSN---QLTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        75 W~~~~~~pi~~y~~~~r~~~~~~~--~~~~~---~L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      |.+.+.++...+.|..........  ....+   .+++.+.|.|  .|.|.+|...
T Consensus       120 C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C--~a~N~~g~~~  173 (182)
T 1rhf_A          120 CEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSC--EAHNLKGLAS  173 (182)
T ss_dssp             EEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEE--EEEETTEEEE
T ss_pred             eEecCCCCCCEEEEEcCCeECCCCCCCceEEEEeccccCeEEEE--EEECCCCCcc
Confidence            998776543245553311100111  11222   3455789988  6789999764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.02  E-value=2.7e-09  Score=77.52  Aligned_cols=119  Identities=18%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             CCCcEEEEE-cCCEeEEEEceeCC-CCCEEEEEEEEcCCCc-eEEEEEE--ecCC----CCceeecCCCC---CCCCeEE
Q psy15979          5 TTERRIMET-RGSRHTLMIRKVVA-SDFGNYSCEATNPMGK-HRAYLEL--SGKP----NPAIFRSHPQG---RLPNSYN   72 (152)
Q Consensus         5 ~~~r~~i~~-~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~-~~~~~~v--~~~P----~p~~~~~~~~~---~~~~~~~   72 (152)
                      .+.|+.+.. .+....|.|.+++. +|+|.|+|.|.|..|. ....+.|  ...+    .+|.+...+..   .....+.
T Consensus        50 ~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~  129 (212)
T 2yd1_A           50 TQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL  129 (212)
T ss_dssp             TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEE
T ss_pred             CcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEE
Confidence            457777764 34458999999999 9999999999999998 5554444  3332    12343332211   1357889


Q ss_pred             EEEEecCCCCcceEEEEEEEC---CCCCCC----cceEEe-----cCCCeEEEEEEEEcCCCCCCCC
Q psy15979         73 ITWMVSSYTPLEEFKIKYRKI---PGNEPS----PMSNQL-----TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        73 L~W~~~~~~pi~~y~~~~r~~---~~~~~~----~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      |.|.+.+.++. .+.| ++..   ......    ...+.|     .+.+.|.|  .|.|.+|....+
T Consensus       130 l~C~~~g~p~p-~i~W-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~s~  192 (212)
T 2yd1_A          130 MTCKAIGNPTP-NIYW-IKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYEC--VAENSMGTEHSK  192 (212)
T ss_dssp             ECCEEECSSCC-EEEE-EETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEE--EEEETTEEEECC
T ss_pred             EEEEeccCCCC-eEEE-EECCeEcccCCCeEEccCCeEEEccCChhhCEEEEE--EeecCCCceeEE
Confidence            99998766443 3444 3321   111100    123333     33778888  779999987654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.01  E-value=5.4e-09  Score=78.68  Aligned_cols=120  Identities=15%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC---CCCCCCeEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVS   78 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~---~~~~~~~~~L~W~~~   78 (152)
                      +|..+.++.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|.....|.......   .......+.|.|.+.
T Consensus        45 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~  124 (284)
T 2rik_A           45 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG  124 (284)
T ss_dssp             ECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEE
T ss_pred             ECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEe
Confidence            35567788877667788999999999999999999999999987766655432222221111   012357789999987


Q ss_pred             CCCCcceEEEEEEEC---CCCC-------CCcceEEe-----cCCCeEEEEEEEEcCCCCCC
Q psy15979         79 SYTPLEEFKIKYRKI---PGNE-------PSPMSNQL-----TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        79 ~~~pi~~y~~~~r~~---~~~~-------~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      +.++ ..+.| ++..   ....       .....+.|     .+.+.|.|  .|.|..|...
T Consensus       125 g~p~-~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~  182 (284)
T 2rik_A          125 GSPE-IKVLW-YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC--EAHNAAGSAS  182 (284)
T ss_dssp             SSSC-CEEEE-EETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEE--EEECSSCEEE
T ss_pred             eeCC-CEEEE-EECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEE--EEEcCCCcee
Confidence            6533 33444 3321   1110       00112333     33788988  5688888653

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.01  E-value=1.2e-09  Score=73.75  Aligned_cols=73  Identities=22%  Similarity=0.331  Sum_probs=49.8

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECC-CCCCC------------------c-ceE---Eec
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIP-GNEPS------------------P-MSN---QLT  106 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~-~~~~~------------------~-~~~---~L~  106 (152)
                      .+|.||.+.    ....+++.|+|..+  ++.+|..|.|+|+... ...+.                  . ..+   .|.
T Consensus         4 ~pP~~P~v~----~~~~~sv~L~W~~P~~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~   79 (115)
T 2ic2_A            4 YPPTPPNVT----RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK   79 (115)
T ss_dssp             CCCCCCEEE----ECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCC
T ss_pred             CCCCcCEeE----EEeCCEEEEEEcCCCCCCCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCC
Confidence            357777632    24578999999974  4479999999999872 22221                  0 133   356


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCC
Q psy15979        107 GTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus       107 ~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      +++.|+|||.|.|.+|.|.++.
T Consensus        80 p~t~Y~FRV~A~N~~G~~~pS~  101 (115)
T 2ic2_A           80 PQHTYRFRILAVYSNNDNKESN  101 (115)
T ss_dssp             SSEEEEEEEEEEETTSCEEECC
T ss_pred             CCCEEEEEEEEEeCCCCCCCCC
Confidence            6999999999999999987764

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.00  E-value=6.7e-10  Score=80.10  Aligned_cols=118  Identities=12%  Similarity=0.065  Sum_probs=72.3

Q ss_pred             CCCcEEEEEcC---CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecCCCCCCCCeEEEEEEecC
Q psy15979          5 TTERRIMETRG---SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVSS   79 (152)
Q Consensus         5 ~~~r~~i~~~~---~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~   79 (152)
                      ..+|+.+..+.   ...+|.|.+++.+|+|.|+|.|.|..|.....+.|.  ..|.+|...... ......+.|.|.+.+
T Consensus        51 ~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~g~~v~l~C~~~g  129 (202)
T 3bp6_B           51 QSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILE-VPGTGEVQLTCQARG  129 (202)
T ss_dssp             BCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEEEEE-CTTTCCEEEEEEEEE
T ss_pred             cCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccEEEEe-cCCCCeEEEEEEccc
Confidence            34566665321   457899999999999999999999999777765554  444444333211 124678999999876


Q ss_pred             CCCcceEEEEEEECCCC-------CCCc----ceEE--ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         80 YTPLEEFKIKYRKIPGN-------EPSP----MSNQ--LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        80 ~~pi~~y~~~~r~~~~~-------~~~~----~~~~--L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ++. ..+.| ++.....       ..+.    ....  ..+.+.|.|  .|.|.+|....+
T Consensus       130 ~P~-p~v~W-~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~d~G~Y~C--~a~N~~g~~~~~  186 (202)
T 3bp6_B          130 YPL-AEVSW-QNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSC--MFWNAHMKELTS  186 (202)
T ss_dssp             BSC-CEEEE-TTCCSCCEEEEEECTTSCEEEEEEEEECCCTTCCEEE--EEEETTTTEEEE
T ss_pred             cCC-ceEEE-EeCCCCccCceeeCCCCCEEEEEEEEEEcCCCCEEEE--EEEcCCcccccE
Confidence            533 33333 2211100       0010    1112  334889999  779999965433

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.00  E-value=2.2e-09  Score=77.79  Aligned_cols=111  Identities=11%  Similarity=0.133  Sum_probs=68.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecCCC-CCCCC-eEEEEEEecCCCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQ-GRLPN-SYNITWMVSSYTP   82 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~~-~~~~~-~~~L~W~~~~~~p   82 (152)
                      +|+.+.   .+.+|.|.+++.+|+|.|+|.|.|..|.....+.|.  ..|..|.+..... ..... .+.|.|.+.+..|
T Consensus        62 ~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p  138 (193)
T 2if7_A           62 KRLNFT---QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADD  138 (193)
T ss_dssp             TTEEEC---TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCT
T ss_pred             ccEEEC---CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCC
Confidence            366664   246899999999999999999999999766654444  4444344433221 11233 7999999987544


Q ss_pred             cceEEEEEEECCCC--CCCcceEE--ec--CCCeEEEEEEEEcCCCCC
Q psy15979         83 LEEFKIKYRKIPGN--EPSPMSNQ--LT--GTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        83 i~~y~~~~r~~~~~--~~~~~~~~--L~--~~~~Y~~rV~A~N~~G~g  124 (152)
                      ...+.|. + .+..  ........  ..  +.+.|.|  .|.|.+|..
T Consensus       139 ~p~i~W~-~-~g~~l~~~~~l~i~~~~~~~d~G~Y~C--~a~N~~g~~  182 (193)
T 2if7_A          139 NVSFRWE-A-LGNTLSSQPNLTVSWDPRISSEQDYTC--IAENAVSNL  182 (193)
T ss_dssp             TCEEEEE-E-TTEEEESSSEEEEEECTTTCSCCEEEE--EEEETTEEE
T ss_pred             ceEEEEE-e-CCEEcCCCCeEEEEeccCcCCCCcEEE--EEECCCCcc
Confidence            4455553 2 2110  01112221  22  3789999  779999875

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.00  E-value=1.6e-09  Score=77.76  Aligned_cols=118  Identities=15%  Similarity=0.194  Sum_probs=69.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE----EEEEecCCCCceeecCCCCCCCCeEEEEEEe-cCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA----YLELSGKPNPAIFRSHPQGRLPNSYNITWMV-SSY   80 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~----~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~-~~~   80 (152)
                      ..|+.+..    ..|.|.+++.+|+|.|+|.|.|..|....    .+.|..+|..+.............+.|.|.+ .+.
T Consensus        60 ~~r~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  135 (209)
T 1nbq_A           60 EDRVTFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGS  135 (209)
T ss_dssp             TTTCEEET----TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCB
T ss_pred             cCceEeec----cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCC
Confidence            35666642    68999999999999999999998773322    3444455543322211111235778899986 554


Q ss_pred             CCcceEEEEEEECCC-CC-C---------------CcceEEec-----CCCeEEEEEEEEcCCCCCCCCCCcc
Q psy15979         81 TPLEEFKIKYRKIPG-NE-P---------------SPMSNQLT-----GTNQYQNRRLVRKRFDRGNSTNGGL  131 (152)
Q Consensus        81 ~pi~~y~~~~r~~~~-~~-~---------------~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s~~~~  131 (152)
                      ++ ..+.|. +.... .. .               ....+.|.     +.+.|.|  .|.|.+|....+....
T Consensus       136 p~-~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~s~~v~  204 (209)
T 1nbq_A          136 PP-SEYTWF-KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC--EARNGYGTPMTSNAVR  204 (209)
T ss_dssp             SC-CEEEEE-ETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEE--EEECSSSCCEECCCBC
T ss_pred             CC-ceeEEE-ECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEE--EEeCCcCcccccccEE
Confidence            33 345543 32110 00 0               11233333     3788988  6799999875444443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.00  E-value=6.4e-09  Score=74.42  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCce----EEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKH----RAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKIK   89 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~----~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~~   89 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|..    ...+.|.+.+.+|.+...+  .......+.|.|...+..+  .|.| 
T Consensus        50 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~--~~~w-  126 (184)
T 2gi7_A           50 DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFD--QFAL-  126 (184)
T ss_dssp             SSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCC--EEEE-
T ss_pred             cccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCc--EEEE-
Confidence            34689999999999999999999988742    2345565544444443222  1224689999999765432  4544 


Q ss_pred             EEECCCCCCC--------c---ceEEecCCCeEEEEEEEEcCCC---CCCCCCCc
Q psy15979         90 YRKIPGNEPS--------P---MSNQLTGTNQYQNRRLVRKRFD---RGNSTNGG  130 (152)
Q Consensus        90 ~r~~~~~~~~--------~---~~~~L~~~~~Y~~rV~A~N~~G---~g~~s~~~  130 (152)
                      ++....-...        .   .....++.+.|.|  .|.|..+   ++++++..
T Consensus       127 ~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C--~a~n~~~~~~~s~~S~~~  179 (184)
T 2gi7_A          127 YKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC--YSFSSRDPYLWSAPSDPL  179 (184)
T ss_dssp             EECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEE--EEECTTSTTBCCCCCCCE
T ss_pred             EECCCcCcceecCCCceEEEEEccCCccCCeEEEE--EEEeCCCCcccCCCCCcE
Confidence            4432211100        0   1123445889999  7788864   45555544

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.99  E-value=7.7e-09  Score=79.55  Aligned_cols=111  Identities=23%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             eEEEEcee-CCCCCEEEEEEEEcCCCceEE-EEEEe----cCCCCceeecC-CCCCCCCeEEEEEEecC--CCCcceEEE
Q psy15979         18 HTLMIRKV-VASDFGNYSCEATNPMGKHRA-YLELS----GKPNPAIFRSH-PQGRLPNSYNITWMVSS--YTPLEEFKI   88 (152)
Q Consensus        18 ~~L~I~~v-~~~D~G~YtC~A~N~~G~~~~-~~~v~----~~P~p~~~~~~-~~~~~~~~~~L~W~~~~--~~pi~~y~~   88 (152)
                      ..+.|.++ .+...-.+.|.|.|.+|.... .+.+.    .+|.||..... ......+++.|+|..+.  +.++..|.+
T Consensus       158 ~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v  237 (303)
T 1i1r_A          158 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI  237 (303)
T ss_dssp             TEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEE
T ss_pred             eEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEE
Confidence            46778888 666666777999999998764 22222    35666654321 12235689999999753  357899999


Q ss_pred             EEEECCCCCCC----------cceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         89 KYRKIPGNEPS----------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        89 ~~r~~~~~~~~----------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      +|+......+.          ...+.   |.+++.|+|||.|.|..|.|.+|+
T Consensus       238 ~y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~  290 (303)
T 1i1r_A          238 QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD  290 (303)
T ss_dssp             EEEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCC
T ss_pred             EEEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCC
Confidence            99987643221          13454   455999999999999999887764

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.99  E-value=1.6e-09  Score=71.77  Aligned_cols=69  Identities=14%  Similarity=0.240  Sum_probs=51.8

Q ss_pred             CCCCeEEEEEEec---CCCCcceEEEEEEECCCCCCC------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        66 ~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      ...+++.|.|..+   ++.+|..|.|+|+......+.      ...+   .|.+++.|+|||.|.|..|.|.++....+.
T Consensus        21 ~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~~~~~~  100 (110)
T 2crz_A           21 PKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDIT  100 (110)
T ss_dssp             CCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECSSCBCCCCCCEEEE
T ss_pred             cCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEeCCcEEEEECCcCCCCEEEEEEEEEcCCccCCCCCccccc
Confidence            3468999999754   357899999999876544322      1233   466699999999999999999998766554


Q ss_pred             c
Q psy15979        134 P  134 (152)
Q Consensus       134 ~  134 (152)
                      +
T Consensus       101 T  101 (110)
T 2crz_A          101 T  101 (110)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.97  E-value=1.1e-08  Score=85.97  Aligned_cols=122  Identities=14%  Similarity=0.175  Sum_probs=76.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeecCC-CCCCCCeEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHP-QGRLPNSYNITWMV   77 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~-~~~~~~~~~L~W~~   77 (152)
                      +|..+.|+.+...  ++.|.|.+++.+|+|.|+|.|.|..|...+   .+.|...|..+...... .......+.|.|.+
T Consensus       328 ~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~  405 (642)
T 1e07_A          328 SLPVSPRLQLSND--NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA  405 (642)
T ss_pred             cCCCcCCEEEeCC--CCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEc
Confidence            4556677777533  468999999999999999999999997543   34555455433222111 11246789999998


Q ss_pred             cCCCCcceEEEEEEECCCCCCCcceEEe-----cCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         78 SSYTPLEEFKIKYRKIPGNEPSPMSNQL-----TGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        78 ~~~~pi~~y~~~~r~~~~~~~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      .+.++. .+.|.. . +..-.....+.|     .+.+.|.|  .|.|.+|....+...
T Consensus       406 ~g~p~~-~i~W~~-~-g~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~s~~~  458 (642)
T 1e07_A          406 ASNPPA-QYSWLI-D-GNIQQHTQELFISNITEKNSGLYTC--QANNSASGHSRTTVK  458 (642)
T ss_pred             CccCCC-eEEEEE-C-CEEcCCCceEEEccCChhhCeEEEE--EEEcCCCCCcccceE
Confidence            775443 455532 2 111111222333     34778877  789999987766543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.97  E-value=1e-08  Score=73.62  Aligned_cols=113  Identities=10%  Similarity=0.002  Sum_probs=68.5

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCce----EEEEEEecCCCCceeecCCC--CCCCCeEEEEEEecCCCCcceEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKH----RAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~----~~~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      .....|.|.+++.+|+|.|+|.|.|..|..    ...+.|.+.+.+|.+...+.  ......+.|.|.+.+..+  .|.|
T Consensus        54 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~~w  131 (188)
T 1oll_A           54 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS--MFLL  131 (188)
T ss_dssp             CCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCS--EEEE
T ss_pred             cceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCC--EEEE
Confidence            356789999999999999999999976532    33556655443444433221  124689999999765433  4444


Q ss_pred             EEEECCCCC------CCcceEE-----ecCCCeEEEEEEEEcC-CCCCCCCCCccc
Q psy15979         89 KYRKIPGNE------PSPMSNQ-----LTGTNQYQNRRLVRKR-FDRGNSTNGGLI  132 (152)
Q Consensus        89 ~~r~~~~~~------~~~~~~~-----L~~~~~Y~~rV~A~N~-~G~g~~s~~~~~  132 (152)
                       ++....-.      .....+.     .++.+.|.|.  |.|. .+++.+|+...+
T Consensus       132 -~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~--a~n~~~~~s~~S~~~~l  184 (188)
T 1oll_A          132 -LKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCF--GSYNNHAWSFPSEPVKL  184 (188)
T ss_dssp             -EEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEE--CEEETTEECCCCCCEEE
T ss_pred             -EECCccccccccCCCceeEEEECCCCcCCCcEEEEE--EEcCCCcCCCCCCcEEE
Confidence             44432110      1112222     3448999995  4554 456777765544

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.97  E-value=4.3e-09  Score=82.14  Aligned_cols=106  Identities=21%  Similarity=0.230  Sum_probs=70.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEecCCCCceeecCCCCCCCCeEEEEEEecCC-CCcceEEEEEEEC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-TPLEEFKIKYRKI   93 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~-~pi~~y~~~~r~~   93 (152)
                      .+.|.|.+++.+|+|+|+|.+   .|...+  .+.|..+|.+|.+.-. ......++.+.|..+.. .+...|.++|+..
T Consensus        59 ~~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~V~~pP~~P~l~c~-~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~  134 (325)
T 1n26_A           59 GRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVPPEEPQLSCF-RKSPLSNVVCEWGPRSTPSLTTKAVLLVRKF  134 (325)
T ss_dssp             SSEEEECSCCGGGCEEEEEES---SSSCSCEEEEEECCCCCCCCCEEE-BSSTTSCEEEEECCSSCCCTTCEEEEEEEEE
T ss_pred             cceEEecccchhhCeEeEEEe---CCEEeeeEEEEeccCCCCCceeEE-eecCCCcEEEEECCCCCCCCCceEEEEEEEc
Confidence            357999999999999999993   565544  5566677776653211 01235689999997432 2446899998864


Q ss_pred             C-CCC------------CCcceEEec----CCCeEEEEEEEEcCCCCCCC
Q psy15979         94 P-GNE------------PSPMSNQLT----GTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        94 ~-~~~------------~~~~~~~L~----~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      . ...            ....+..+.    +++.|+|+|.|.|.+|.+.+
T Consensus       135 ~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s  184 (325)
T 1n26_A          135 QNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFS  184 (325)
T ss_dssp             SSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEEC
T ss_pred             cCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCccc
Confidence            2 110            011222333    46999999999999999753

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.9e-10  Score=76.11  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             CCceEEEEEE--ecCCCCceeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCCCCCC-------cceE---Ee
Q psy15979         41 MGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNEPS-------PMSN---QL  105 (152)
Q Consensus        41 ~G~~~~~~~v--~~~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~~-------~~~~---~L  105 (152)
                      .|.+...+.|  ...|.||..... .....+++.|.|..+.   +.+|..|.++|+......+.       ...+   .|
T Consensus         3 ~G~~~~~~~v~~~~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~v~~L   81 (120)
T 2yux_A            3 SGSSGASIDIQIIDRPGPPQIVKI-EDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITEL   81 (120)
T ss_dssp             CCCCCCCCCCCCCCCCCCCSCEEE-EEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEESSCCSSCCEECCC
T ss_pred             CCcccEEEEEEeecCCCcCCCCEE-EEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeeecCCcCEEEECCC
Confidence            3555554333  456766643211 1234689999999753   36899999999987544321       1233   46


Q ss_pred             cCCCeEEEEEEEEcCCCCCCCCC-Ccccc
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNSTN-GGLIV  133 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s~-~~~~~  133 (152)
                      .+++.|+|||.|.|.+|.|+++. +..+.
T Consensus        82 ~p~t~Y~frV~A~n~~G~s~~S~~s~~~~  110 (120)
T 2yux_A           82 VIGNEYYFRVFSENMCGLSEDATMTKESA  110 (120)
T ss_dssp             CSSEEEEEEECCCSSSCSCSSCEECSSCE
T ss_pred             CCCCEEEEEEEEeeCCcCCCCccCcCCce
Confidence            66999999999999999999987 44443

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=6.5e-09  Score=67.83  Aligned_cols=83  Identities=20%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             ecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCC-C------CcceE---EecCCCeEEEEEEEEcC
Q psy15979         51 SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-P------SPMSN---QLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        51 ~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-~------~~~~~---~L~~~~~Y~~rV~A~N~  120 (152)
                      ...|.+|..... .....+++.|.|......++..|.|+|+...... +      ....+   .|.+++.|+|||.|.|.
T Consensus         5 ~~~P~~P~~~~~-~~~~~~sv~l~W~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   83 (106)
T 2dju_A            5 SSGPKPPIDLVV-TETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNS   83 (106)
T ss_dssp             CCSCCCCEEEEE-EEEETTEEEEEEECCCSSCCSEEEEEEEETTCCSCCCCBCCCCSSEEEEESCCTTCEEEEEEEEECS
T ss_pred             CcCCcCCCCcEE-EeccCCEEEEEEcCCCCCCceEEEEEEEECCCCCCeEEccCCCccEEEEeCCCCCcEEEEEEEEEeC
Confidence            356666543321 1224689999999876678999999998876431 1      12334   46669999999999999


Q ss_pred             CCCCCCCCCccccc
Q psy15979        121 FDRGNSTNGGLIVP  134 (152)
Q Consensus       121 ~G~g~~s~~~~~~~  134 (152)
                      .|.|.++....+..
T Consensus        84 ~G~~~~S~~~~~~T   97 (106)
T 2dju_A           84 IGRGPPSEAVRART   97 (106)
T ss_dssp             SCBCCCCCCEEEEC
T ss_pred             CccCCCcccEEeEc
Confidence            99999987665433

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.96  E-value=3.2e-09  Score=83.34  Aligned_cols=105  Identities=17%  Similarity=0.167  Sum_probs=66.2

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceEEEEEEECCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~   95 (152)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|.....|.......  .......+.|.|.+.+.++. .+.|. +....
T Consensus       270 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~-~~g~~  347 (388)
T 2v5m_A          270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-TVSWM-KDGKA  347 (388)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCC-EEEEE-ETTEE
T ss_pred             CEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCC-eEEEE-ECCEE
Confidence            4899999999999999999999999988766655332221111110  11235789999998766443 45543 32110


Q ss_pred             CCCCcceEEe-----cCCCeEEEEEEEEcCCCCCCC
Q psy15979         96 NEPSPMSNQL-----TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        96 ~~~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      -......+.|     .+.+.|.|  .|.|.+|....
T Consensus       348 i~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~  381 (388)
T 2v5m_A          348 IGHSESVLRIESVKKEDKGMYQC--FVRNDRESAEA  381 (388)
T ss_dssp             CSCCSSEEEESSCCGGGCEEEEE--EEECSSCEEEE
T ss_pred             CccCCCEEEEecCChhhCEEEEE--EEEcCCCcEEE
Confidence            0112233433     34889988  77999997643

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=98.96  E-value=4.5e-09  Score=78.78  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=72.7

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEe----cCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELS----GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFK   87 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~----~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~   87 (152)
                      ....++|.++.+.-.-.+...|.|.+|....+  +.+.    .+|.|+....  .....+++.|.|..+.  +.+|..|.
T Consensus        44 ~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~~--~~~~~~sv~l~W~~P~~~~G~i~~Y~  121 (232)
T 4go6_B           44 DYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIK--ISKSPDGAHLTWEPPSVTSGKIIEYS  121 (232)
T ss_dssp             -----CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEEE--EEEETTEEEEEEECCSCCSSCCCEEE
T ss_pred             CccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCeeeE--EecCCCEEEEEEeCCCCCCCceeeEE
Confidence            34568899999988888899999999987652  2222    2233333322  1234689999999753  35899999


Q ss_pred             EEEEECCCCCCC---------------------c----------ceEEecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         88 IKYRKIPGNEPS---------------------P----------MSNQLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        88 ~~~r~~~~~~~~---------------------~----------~~~~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      |+|+........                     .          ....|.+++.|+|||.|.|..|.|.+|.
T Consensus       122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~  193 (232)
T 4go6_B          122 VYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQ  193 (232)
T ss_dssp             EEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCEE
T ss_pred             EEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCCceEEEEEEECCCcCCCCcc
Confidence            999876433200                     0          0124667899999999999999998774

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.95  E-value=4.6e-09  Score=87.06  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCC-
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSY-   80 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~-   80 (152)
                      +.|+.+...  ....+|.|.+++.+|+|.|+|+| |..|.....+.|.....||.+....  .......+.|.|.+.+. 
T Consensus       392 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~  470 (585)
T 2ocw_A          392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF  470 (585)
T ss_pred             CCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCC
Confidence            457777643  22345999999999999999999 9999888877766543333332211  11236789999988632 


Q ss_pred             --CCcceEEEEEEECCC----CC-C-----------C-cceEEe-----cCCCeEEEEEEEEcCCCCCCCC
Q psy15979         81 --TPLEEFKIKYRKIPG----NE-P-----------S-PMSNQL-----TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        81 --~pi~~y~~~~r~~~~----~~-~-----------~-~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                        .|...+.| ++....    .. .           . ...+.|     ++.+.|.|  .|.|.+|.++..
T Consensus       471 ~~~p~~~v~W-~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~  538 (585)
T 2ocw_A          471 SSYEKYWCKW-NNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWC--GVKQGHFYGETA  538 (585)
T ss_pred             CCCccEEEEE-eecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEE--EeEeCCCccEEE
Confidence              23333333 322100    00 0           0 012333     33789988  779999987754

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.95  E-value=1e-09  Score=72.53  Aligned_cols=52  Identities=37%  Similarity=0.404  Sum_probs=45.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      +|..+.|+.+...+..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.+.
T Consensus        54 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           54 VLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             ECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            4667789999877778899999999999999999999999998888777643

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.95  E-value=5.1e-09  Score=75.51  Aligned_cols=112  Identities=9%  Similarity=0.059  Sum_probs=67.7

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCC-Cc----eEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPM-GK----HRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~-G~----~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      ....|.|.+++.+|+|.|+|.|.|.. |.    ....+.|...|.+|.+...+  .......+.|.|.+.+..+  .+.|
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~--~v~W  133 (198)
T 1ugn_A           56 KKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFD--GFIL  133 (198)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCS--EEEE
T ss_pred             cccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCCCc--EEEE
Confidence            34689999999999999999999988 62    23456666644444433222  1124678999999877632  4444


Q ss_pred             EEEECCCCC---------C-C--cceEEe-----cCCCeEEEEEEEEcCCC---CCCCCCCccc
Q psy15979         89 KYRKIPGNE---------P-S--PMSNQL-----TGTNQYQNRRLVRKRFD---RGNSTNGGLI  132 (152)
Q Consensus        89 ~~r~~~~~~---------~-~--~~~~~L-----~~~~~Y~~rV~A~N~~G---~g~~s~~~~~  132 (152)
                       ++....-.         . .  ...+.|     ++.+.|.|  .|.|..+   ++.+++...+
T Consensus       134 -~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C--~a~n~~~~~~~s~~S~~~~l  194 (198)
T 1ugn_A          134 -CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC--YAYDSNSPYEWSLPSDLLEL  194 (198)
T ss_dssp             -EEC------CEEEC------CCEEEEEECCCCTTSCEEEEE--EEECTTSTTEECCCCCCEEE
T ss_pred             -EECCCccCCccccccccCCCcceeEEEecccCcccCeEEEE--EEEeCCCCccccCcCceEEE
Confidence             33221100         0 0  123333     34889998  7789876   5666655443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.95  E-value=1.5e-09  Score=70.99  Aligned_cols=54  Identities=26%  Similarity=0.410  Sum_probs=43.7

Q ss_pred             cccCCC--cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCc
Q psy15979          2 RLETTE--RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (152)
Q Consensus         2 ~l~~~~--r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~   57 (152)
                      +|..+.  ||.+..++....|.|.+++.+|+|.|+|+|.|  +...+.+.|..+|.|+
T Consensus        46 ~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~~~~~~l~V~~~p~p~  101 (103)
T 1x44_A           46 EIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG--GQSSAKLSVDLKSGPS  101 (103)
T ss_dssp             ECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT--EEEEEEEEEECCCSCC
T ss_pred             ECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC--CcEEEEEEEeCCCCCC
Confidence            355555  88998888889999999999999999999999  5555667777777653

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=5.5e-10  Score=75.27  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=67.8

Q ss_pred             EEEEEEcCCCceEEE--EEEe---cCCC-CceeecCCCCCCCCeEEEEEEecC----CCCcceEEEEEEECCCCCC----
Q psy15979         33 YSCEATNPMGKHRAY--LELS---GKPN-PAIFRSHPQGRLPNSYNITWMVSS----YTPLEEFKIKYRKIPGNEP----   98 (152)
Q Consensus        33 YtC~A~N~~G~~~~~--~~v~---~~P~-p~~~~~~~~~~~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~~~----   98 (152)
                      +++.|.|.+|....+  +.+.   ..|. ||..... .....+++.|.|..+.    +.++..|.++|+.......    
T Consensus         2 ~~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~-~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~   80 (124)
T 2ed9_A            2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSL-EVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETL   80 (124)
T ss_dssp             CSCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCE-EEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEEE
T ss_pred             CeEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEE-EEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEEe
Confidence            467889999976543  2221   3343 4422110 1224689999999863    4578999999998754331    


Q ss_pred             --CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         99 --SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        99 --~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                        ....+   .|.+++.|.|+|.|.|..|.|.++....+.+
T Consensus        81 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  121 (124)
T 2ed9_A           81 EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET  121 (124)
T ss_dssp             CSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEEC
T ss_pred             cCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEEC
Confidence              11233   4666999999999999999999998766544

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.95  E-value=2.9e-09  Score=77.21  Aligned_cols=110  Identities=12%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--E--EEEecCCCCceeecCCCCCCCCeEEEEEEecCC
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--Y--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~--~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~   80 (152)
                      .++|+.+..+   ++|.|.+++.+|+|.|+|.|.|..|....  .  +.|...+.+|.+...     ...+.|.|.+.+.
T Consensus        56 ~~~R~~~~~n---gsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~-----~~~v~L~C~~~~~  127 (182)
T 1hnf_A           56 EKDTYKLFKN---GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWT-----CINTTLTCEVMNG  127 (182)
T ss_dssp             SCTTEEECTT---SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEEE-----TTTTEEEEECSSC
T ss_pred             CCCeEEECCC---CCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEEc-----cCcEEEEeEccCC
Confidence            4678888633   38999999999999999999999998643  3  444444333333321     2257889988765


Q ss_pred             CCcceEEEEEEECCCCC--CCcceEE--ecCCCeEEEEEEEEcCCCCCCC
Q psy15979         81 TPLEEFKIKYRKIPGNE--PSPMSNQ--LTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        81 ~pi~~y~~~~r~~~~~~--~~~~~~~--L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ++ ..|.|. +.-..-.  .....+.  ..+.+.|.|  .|.|.+|....
T Consensus       128 p~-~~~~W~-~~g~~l~~~~~~i~~~~~~~d~G~Y~C--~a~N~~~~~~s  173 (182)
T 1hnf_A          128 TD-PELNLY-QDGKHLKLSQRVITHKWTTSLSAKFKC--TAGNKVSKESS  173 (182)
T ss_dssp             SS-CEEEEE-ESSCEEEEESSCEEEECCSCEEEEEEE--EEECSSCEEEE
T ss_pred             CC-CEEEEE-ECCEECCCCCcEEEEecccCCCcEEEE--EEEeCCCCcEE
Confidence            43 345553 2210000  0112223  244889998  78999987643

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.94  E-value=3.4e-08  Score=74.20  Aligned_cols=85  Identities=13%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC-------ce----EEEEEEecCC------------CCceee
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-------KH----RAYLELSGKP------------NPAIFR   60 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~----~~~~~v~~~P------------~p~~~~   60 (152)
                      ++|+.+..+  +...+|.|.+++.+|+|.|+|.|.|..|       ..    ...+.|...|            .++.+.
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  143 (257)
T 1f3r_B           64 KSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLT  143 (257)
T ss_dssp             STTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSC
T ss_pred             CCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEE
Confidence            468888653  5677999999999999999999999975       11    1235554433            112121


Q ss_pred             cCC---CCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         61 SHP---QGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        61 ~~~---~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ..+   .......+.|.|.+.+..+.  ...||+.
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~  176 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGSQNINN--YLAWYQQ  176 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBT--CEEEEEE
T ss_pred             ccCCEEEEcCCCCEEEEEEECCcCCC--cEEEEEE
Confidence            111   12246889999998765432  2345554

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.9e-09  Score=70.28  Aligned_cols=54  Identities=24%  Similarity=0.404  Sum_probs=44.6

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~   57 (152)
                      +|..+.|+.+..++....|.|.+++.+|+|.|+|.|.|  ......+.|..+|.++
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           47 AIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA--SKSTASLHVEEKASGP  100 (103)
T ss_dssp             BCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS--CEEEEEEEECCCSSSS
T ss_pred             EccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc--CCcEEEEEEeCCCCCC
Confidence            46677899998888888999999999999999999999  4555567777777654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.94  E-value=1.5e-08  Score=72.86  Aligned_cols=114  Identities=12%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC-CceEEEEE--EecCCCCceeecCCC-CCCCCeEEEEEEecCCCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLE--LSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTP   82 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~--v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~p   82 (152)
                      +|+.+..   +++|.|.+++.+|+|.|+|.+.|.. |.....+.  |...|..+.+..... ......+.|.|.+.+.+|
T Consensus        63 ~r~~~~~---~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp  139 (208)
T 3r4d_A           63 GREIIYS---NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGA  139 (208)
T ss_dssp             SSEEECT---TSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTC
T ss_pred             ceeEEec---CCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCC
Confidence            4555542   3479999999999999999999985 55545444  444444444433222 234678999999887543


Q ss_pred             cceEEEEEE--ECCCCC-----CCcceEEec-----CCCeEEEEEEEEcCCCCCCCC
Q psy15979         83 LEEFKIKYR--KIPGNE-----PSPMSNQLT-----GTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        83 i~~y~~~~r--~~~~~~-----~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                        .+.|...  ......     .....+.|.     +.+.|.|  .|.|.+|...+.
T Consensus       140 --~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~g~~~s~  192 (208)
T 3r4d_A          140 --NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC--EISNPVSVRRSN  192 (208)
T ss_dssp             --EEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEE--EEECTTCCEECC
T ss_pred             --ceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEE--EEecCCCcccCC
Confidence              4554331  111110     111233333     3789988  679999986544

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.94  E-value=1.6e-09  Score=70.39  Aligned_cols=50  Identities=24%  Similarity=0.292  Sum_probs=43.6

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.++.+...+....|.|.+++.+|+|.|+|+|.|..|.+...+.|.
T Consensus        48 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   97 (103)
T 3qp3_A           48 ELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD   97 (103)
T ss_dssp             ECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEE
Confidence            45667889888877888999999999999999999999999998876654

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=98.94  E-value=6.8e-09  Score=68.38  Aligned_cols=65  Identities=11%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             eEEEEEEecC---CCCcceEEEEEEECCCCCCC-----------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         70 SYNITWMVSS---YTPLEEFKIKYRKIPGNEPS-----------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        70 ~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~~-----------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ++.|+|..+.   +.||..|.++|+......+.           ...+   .|.+++.|+|||.|.|..|.|.+|....+
T Consensus        21 ~v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~  100 (105)
T 2haz_A           21 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF  100 (105)
T ss_dssp             CEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEE
T ss_pred             cEEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEEEEEEcCCccCCCcCCEee
Confidence            3999999753   34699999999987655331           1334   35669999999999999999999987765


Q ss_pred             cc
Q psy15979        133 VP  134 (152)
Q Consensus       133 ~~  134 (152)
                      .+
T Consensus       101 ~T  102 (105)
T 2haz_A          101 KT  102 (105)
T ss_dssp             EC
T ss_pred             EE
Confidence            44

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.94  E-value=2.9e-09  Score=89.99  Aligned_cols=77  Identities=18%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEec---CCCCcceEEEEEEECCCCCCCc------ceE---EecCCCeEEEEEEEEcC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSP------MSN---QLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~~~------~~~---~L~~~~~Y~~rV~A~N~  120 (152)
                      +|.||.... ....+.++++|+|..+   ++++|+.|.++++..+...|..      ..+   .|.+++.|+|||.|.|.
T Consensus         9 ~P~pP~~P~-v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~~~~t~~~V~~L~~g~~Y~FRV~A~N~   87 (573)
T 3uto_A            9 EPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTIEGLRAGKQYEFRIIAENK   87 (573)
T ss_dssp             CCCCCEEEE-EEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEEESSSEEEECCCCTTCEEEEEEEEEET
T ss_pred             CCccCCCCE-EEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeccccCCEEEeCCCCCCCcEeEEEEEEcC
Confidence            465554321 1134579999999974   5689999999999988776432      334   46669999999999999


Q ss_pred             CCCCCCCCCc
Q psy15979        121 FDRGNSTNGG  130 (152)
Q Consensus       121 ~G~g~~s~~~  130 (152)
                      +|+|+|+...
T Consensus        88 ~G~s~PS~~s   97 (573)
T 3uto_A           88 HGQSKPCEPT   97 (573)
T ss_dssp             TEECCCCCCC
T ss_pred             ceEcCCcCCC
Confidence            9999998643

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.93  E-value=8.5e-09  Score=74.61  Aligned_cols=116  Identities=10%  Similarity=0.024  Sum_probs=67.5

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCc------eEEEEEEecCCCCceeecCCCCCCCCeEEEEEEe
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK------HRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMV   77 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~------~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~   77 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..|.      ....+.|...|.+|.+...........+.|.|.+
T Consensus        68 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~  147 (214)
T 2zg1_A           68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSL  147 (214)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEEC
T ss_pred             cCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEe
Confidence            367777532  24568999999999999999999998642      2345666666655544332222346789999998


Q ss_pred             cCC---CCcceEEEEEEECCCC-C---CCcceEEecC-----CCeEEEEEEEEcCCCCC
Q psy15979         78 SSY---TPLEEFKIKYRKIPGN-E---PSPMSNQLTG-----TNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        78 ~~~---~pi~~y~~~~r~~~~~-~---~~~~~~~L~~-----~~~Y~~rV~A~N~~G~g  124 (152)
                      .+.   .|...+.| ++..... .   .....+.|..     ++.|.|  .|.|..|..
T Consensus       148 ~~~~~~~p~p~v~W-~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C--~a~n~~~~~  203 (214)
T 2zg1_A          148 PGSCEAGPPLTFSW-TGNALSPLDPETTRSSELTLTPRPEDHGTNLTC--QMKRQGAQV  203 (214)
T ss_dssp             TTCCSCSSCCEEEE-ESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEE--EEECC----
T ss_pred             ccCCCCCCCceEEE-eCCCCccCCCCceeEEEEEEecccHHcCcEEEE--EEEeCCCCc
Confidence            653   23334444 3322110 0   1112333333     679999  668876544

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=98.93  E-value=1.6e-08  Score=73.76  Aligned_cols=110  Identities=23%  Similarity=0.201  Sum_probs=75.8

Q ss_pred             eEEEEcee-CCCCCEEEEEEEEcCCCceEE-EEEEe----cCCCCceeecC-CCCCCCCeEEEEEEecC--CCCcceEEE
Q psy15979         18 HTLMIRKV-VASDFGNYSCEATNPMGKHRA-YLELS----GKPNPAIFRSH-PQGRLPNSYNITWMVSS--YTPLEEFKI   88 (152)
Q Consensus        18 ~~L~I~~v-~~~D~G~YtC~A~N~~G~~~~-~~~v~----~~P~p~~~~~~-~~~~~~~~~~L~W~~~~--~~pi~~y~~   88 (152)
                      ....|.++ .....-.+.+.|.|..|.... .+.+.    .+|.||..... ......+++.|+|..+.  +.++..|.|
T Consensus        62 ~~~~i~~L~~~~t~Y~~~V~A~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v  141 (215)
T 1bqu_A           62 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI  141 (215)
T ss_dssp             TEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEE
T ss_pred             ceEEEcCCccccccEEEEEEEEecccCccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEEE
Confidence            46778888 676777788999999998763 22221    35666654321 12225689999999753  347889999


Q ss_pred             EEEECCCCCCC----------cceEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         89 KYRKIPGNEPS----------PMSNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        89 ~~r~~~~~~~~----------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      +|+......+.          ...+.   |.+++.|+|||.|.|..|.|.+|
T Consensus       142 ~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S  193 (215)
T 1bqu_A          142 QYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS  193 (215)
T ss_dssp             EEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCC
T ss_pred             EEccCCCCCceEeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccC
Confidence            99987543211          13444   55599999999999999987644

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.93  E-value=2.6e-09  Score=68.86  Aligned_cols=51  Identities=25%  Similarity=0.455  Sum_probs=43.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.|+.+...+....|.|.+++.+|+|.|+|.|.|..|.+.+.+.|..
T Consensus        42 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV   92 (97)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence            356678898876667789999999999999999999999999998766653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.92  E-value=1.2e-08  Score=73.91  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=57.1

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc-----eEEEEEEecCC-CCceeecCCCC---CCCCeEEEEE
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSGKP-NPAIFRSHPQG---RLPNSYNITW   75 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-----~~~~~~v~~~P-~p~~~~~~~~~---~~~~~~~L~W   75 (152)
                      .++|+.+...+...+|.|.+++.+|+|.|+|.|.|..|.     ....+.|...| .+|.+...+..   .....+.|.|
T Consensus        57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C  136 (213)
T 3mj8_L           57 IPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVC  136 (213)
T ss_dssp             SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEE
T ss_pred             ccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEE
Confidence            346888877778889999999999999999999999982     22345555444 44444332211   1368899999


Q ss_pred             EecCCC-CcceEEE
Q psy15979         76 MVSSYT-PLEEFKI   88 (152)
Q Consensus        76 ~~~~~~-pi~~y~~   88 (152)
                      .+.+.. +...+.|
T Consensus       137 ~~~g~~p~~~~v~W  150 (213)
T 3mj8_L          137 MINGFYPADVAVTW  150 (213)
T ss_dssp             EEEEEBSSCCEEEE
T ss_pred             EeeceeCCCeEEEE
Confidence            987643 3234444

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.92  E-value=2e-09  Score=74.31  Aligned_cols=51  Identities=24%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             cccCCCcEEEEE-c------CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMET-R------GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~-~------~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.++.+.. .      ...+.|.|.+++.+|+|+|+|+|+|.+|.+.+++.|..
T Consensus        40 ~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v   97 (126)
T 1he7_A           40 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF   97 (126)
T ss_dssp             ECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEE
Confidence            567777765432 1      13578999999999999999999999999999877763

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.92  E-value=6.2e-09  Score=76.83  Aligned_cols=81  Identities=15%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce-------EEEEEEecCCCCceeecCCC----CCCCCeEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-------RAYLELSGKPNPAIFRSHPQ----GRLPNSYNITW   75 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-------~~~~~v~~~P~p~~~~~~~~----~~~~~~~~L~W   75 (152)
                      +|+.+... ...+|.|.+++.+|+|.|+|.|.|..|..       ...+.|...|.|+.......    ......+.|.|
T Consensus        80 ~r~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C  158 (250)
T 2fbo_J           80 GRASVANL-AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTC  158 (250)
T ss_dssp             TTEECSCT-TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECC
T ss_pred             ceEEeccC-CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEE
Confidence            45555432 24579999999999999999999988853       33455555543433322111    12367889999


Q ss_pred             EecCCCCcceEEEE
Q psy15979         76 MVSSYTPLEEFKIK   89 (152)
Q Consensus        76 ~~~~~~pi~~y~~~   89 (152)
                      .+.+.++. .+.|.
T Consensus       159 ~~~g~p~p-~v~W~  171 (250)
T 2fbo_J          159 PCTDCANA-NVTWY  171 (250)
T ss_dssp             CEESCTTC-EEEEE
T ss_pred             EecCCCCC-eeEEE
Confidence            98774433 45543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.92  E-value=2.6e-09  Score=68.69  Aligned_cols=50  Identities=22%  Similarity=0.309  Sum_probs=43.6

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.|+.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        46 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~   95 (99)
T 3puc_A           46 AITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT   95 (99)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEE
Confidence            35667899998877788999999999999999999999999998876664

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.91  E-value=1e-08  Score=72.75  Aligned_cols=116  Identities=18%  Similarity=0.059  Sum_probs=69.5

Q ss_pred             CCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCC-CceEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCC
Q psy15979          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSY   80 (152)
Q Consensus         5 ~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~   80 (152)
                      .+.|+.+.. ....+.|.|.+++.+|+|.|+|.|.|.. |.....+.|.....|.......  .......+.|.|.+.+.
T Consensus        48 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~  127 (191)
T 1epf_A           48 NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS  127 (191)
T ss_dssp             BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECS
T ss_pred             CCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCC
Confidence            346676653 3567899999999999999999999998 4555555555433232211110  11246788999998866


Q ss_pred             CCcceEEEEEEECCC----CC-----CCcceEEe-----cCCCeEEEEEEEEcCCCCC
Q psy15979         81 TPLEEFKIKYRKIPG----NE-----PSPMSNQL-----TGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        81 ~pi~~y~~~~r~~~~----~~-----~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ++. .+.|. +....    ..     .....+.|     .+.+.|.|  .|.|..|..
T Consensus       128 p~~-~v~W~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~~~~  181 (191)
T 1epf_A          128 LPP-TIIWK-HKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC--EGRILARGE  181 (191)
T ss_dssp             SCC-EEEEE-ETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEE--EEEEGGGTE
T ss_pred             CCC-EEEEE-ECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEE--EEEEeccee
Confidence            543 34443 32110    00     01112333     33788998  578887643

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.91  E-value=2.3e-09  Score=70.48  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=33.1

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      .+.|.|.+++.+|+|.|+|+|+|.+|.++.++.|...
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   97 (103)
T 1wwb_X           61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred             EEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEC
Confidence            4569999999999999999999999999998887643

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=98.91  E-value=1.1e-08  Score=69.21  Aligned_cols=69  Identities=12%  Similarity=0.095  Sum_probs=51.3

Q ss_pred             eEEEEEEecC---CCCcceEEEEEEECCCCCC----C-------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         70 SYNITWMVSS---YTPLEEFKIKYRKIPGNEP----S-------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        70 ~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~----~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ++.|+|..+.   +.||..|.|+|+......+    .       ...+   .|.+++.|+|||.|.|..|.|.++....+
T Consensus        22 tv~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~  101 (122)
T 2e3v_A           22 TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF  101 (122)
T ss_dssp             CEEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEE
T ss_pred             cEEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEEEEEEeCCccCCCcccccc
Confidence            3999999753   3469999999998765433    1       1334   36669999999999999999999987766


Q ss_pred             cccccc
Q psy15979        133 VPKAKR  138 (152)
Q Consensus       133 ~~~~~~  138 (152)
                      +....+
T Consensus       102 ~t~~~~  107 (122)
T 2e3v_A          102 KTQPVR  107 (122)
T ss_dssp             ECCCCC
T ss_pred             cccCCC
Confidence            444333

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=98.91  E-value=8.3e-09  Score=75.18  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=81.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEe---cCCC-Cceeec-CCCCCCCCeEEEEEEecC--CCCcceEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELS---GKPN-PAIFRS-HPQGRLPNSYNITWMVSS--YTPLEEFK   87 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~---~~P~-p~~~~~-~~~~~~~~~~~L~W~~~~--~~pi~~y~   87 (152)
                      ...+.|.++.+.-.-.+.+.|.|..|....  .+.+.   ..|. ||.... .......+++.|.|..+.  +.++..|.
T Consensus        63 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~Y~  142 (211)
T 3p4l_A           63 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYI  142 (211)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCEEE
T ss_pred             ceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEEEE
Confidence            346888899888777888899999986542  12322   3443 443322 111112579999999753  35799999


Q ss_pred             EEEEECCCCCC----------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccccccc
Q psy15979         88 IKYRKIPGNEP----------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVPKA  136 (152)
Q Consensus        88 ~~~r~~~~~~~----------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~  136 (152)
                      ++|+.......          ....+.   |.+++.|.|+|.|.|..|.|.+|....+..+.
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~  204 (211)
T 3p4l_A          143 IYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK  204 (211)
T ss_dssp             EEEESCTTSCGGGSEEEEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC-
T ss_pred             EEEEECCCCCCCceEEEEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCcc
Confidence            99997654321          113344   55699999999999999999999888766643

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=98.90  E-value=8e-09  Score=67.65  Aligned_cols=71  Identities=14%  Similarity=0.176  Sum_probs=52.4

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC-C-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-P-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ...+++.|+|..+.. ++..|.++|+...... .       ...++.   |.+++.|+|+|.|.|..|.|+|+.....++
T Consensus        13 ~~~~sv~lsW~pP~~-~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~n~~g~s~p~~~~~~~~   91 (100)
T 3b83_A           13 ITLTTAVVTWQPPIL-PIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTG   91 (100)
T ss_dssp             CCSSCEEEEEECCSS-CCSEEEEEEEESSCTTTCEEEEECTTEEEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC
T ss_pred             ecCCEEEEEEcCCcc-cCCEEEEEEEECCCCCCceEEEECCcceEEEECCCCCCCEEEEEEEEEeCCCCCCCEEEEEEEE
Confidence            346899999997753 7899999998765321 1       113344   556999999999999999999987665555


Q ss_pred             ccc
Q psy15979        135 KAK  137 (152)
Q Consensus       135 ~~~  137 (152)
                      ..|
T Consensus        92 ~~~   94 (100)
T 3b83_A           92 SLE   94 (100)
T ss_dssp             CCC
T ss_pred             eee
Confidence            433

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.90  E-value=1.4e-09  Score=86.28  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceEEEEEEEC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~   93 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|..|.......|.....|.......  .......+.|.|.+.+.++. .+.| ++..
T Consensus       256 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~i~W-~k~g  333 (384)
T 3kld_A          256 SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKP-TYRW-LKNG  333 (384)
T ss_dssp             TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC-EEEE-EETT
T ss_pred             CCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCC-eEEE-EECC
Confidence            346899999999999999999999999988765555332222111110  11235788999998765433 3444 3321


Q ss_pred             ---CCCC---CCcceE-----EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         94 ---PGNE---PSPMSN-----QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        94 ---~~~~---~~~~~~-----~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                         ....   .....+     .+++.+.|+|  .|.|.+|....++
T Consensus       334 ~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C--~A~N~~G~~~~~a  377 (384)
T 3kld_A          334 DPLLTRDRIQIEQGTLNITIVNLSDAGMYQC--VAENKHGVIFSSA  377 (384)
T ss_dssp             EECCCBTTEEEETTEEEESSCCGGGCEEEEE--EEEETTEEEEEEE
T ss_pred             EECCCCccEEEeCCEEEEeecChhhCEEEEE--EEEeCCceEEece
Confidence               1110   001122     2345899998  8899999765443

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.90  E-value=6.1e-09  Score=70.57  Aligned_cols=81  Identities=16%  Similarity=0.265  Sum_probs=57.9

Q ss_pred             EEEecCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCC--CC-------Cc---ceEEecCCCeEEE
Q psy15979         48 LELSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGN--EP-------SP---MSNQLTGTNQYQN  113 (152)
Q Consensus        48 ~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~--~~-------~~---~~~~L~~~~~Y~~  113 (152)
                      +.+...|.||..... .....+++.|+|..+  ++.+|..|.++|+.....  .+       ..   ....|.+++.|+|
T Consensus        11 ~~v~~~P~~P~~~~~-~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~f   89 (127)
T 1uey_A           11 APVYDVPNPPFDLEL-TDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSF   89 (127)
T ss_dssp             CCCCCSCCCCEEEEE-ECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECC
T ss_pred             EEeecCCcCCCCcEE-EEccCCEEEEEEECCCCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceEEEecCCCCCEEEE
Confidence            445567877664321 123568999999975  457899999999876421  11       01   1225777999999


Q ss_pred             EEEEEcCCCCCCCCCC
Q psy15979        114 RRLVRKRFDRGNSTNG  129 (152)
Q Consensus       114 rV~A~N~~G~g~~s~~  129 (152)
                      ||.|.|..|.|.++..
T Consensus        90 rV~A~n~~G~s~~S~~  105 (127)
T 1uey_A           90 RVMAVNSIGKSLPSEA  105 (127)
T ss_dssp             EEEEEESSCBCCCCSC
T ss_pred             EEEEEeCCccCCcccc
Confidence            9999999999999876

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.90  E-value=2.6e-08  Score=73.52  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc---eEEEEEEecCCC---CceeecCC---CCCCCCeEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPN---PAIFRSHP---QGRLPNSYNITWM   76 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~---~~~~~~v~~~P~---p~~~~~~~---~~~~~~~~~L~W~   76 (152)
                      .+|+.+...+...+|.|.+++.+|+|.|+|.|.|..|.   ....+.|...+.   |+.+...+   .......+.|.|.
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  142 (240)
T 1moe_A           63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCT  142 (240)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEE
T ss_pred             CccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEE
Confidence            46888877677789999999999999999999998664   223455554431   22222111   1124688999999


Q ss_pred             ecCCCCcceEEEEEEE
Q psy15979         77 VSSYTPLEEFKIKYRK   92 (152)
Q Consensus        77 ~~~~~pi~~y~~~~r~   92 (152)
                      +.+.++......||+.
T Consensus       143 ~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A          143 ASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EESSCGGGSCEEEEEE
T ss_pred             EcCccCCCCEEEEEEE
Confidence            8765422122334554

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.89  E-value=9e-10  Score=71.53  Aligned_cols=42  Identities=19%  Similarity=0.255  Sum_probs=37.0

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      +|..++|+.+..++..+.|.|.+++.+|+|.|+|.|.|..++
T Consensus        44 ~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~~s   85 (93)
T 1waa_A           44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSA   85 (93)
T ss_dssp             ECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEEEE
T ss_pred             ECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCCcEE
Confidence            567788999988888899999999999999999999996543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.89  E-value=1.3e-08  Score=76.70  Aligned_cols=119  Identities=19%  Similarity=0.199  Sum_probs=70.5

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEe--cCCCCceeecCCCCCCCCeEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS--GKPNPAIFRSHPQGRLPNSYNITWMVS   78 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~   78 (152)
                      +|..+.|+.+..++....|.|.+++.+|+|.|+|.|.|..|.... .+.|.  .+|................+.|.|.+.
T Consensus        44 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~  123 (291)
T 2wim_A           44 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS  123 (291)
T ss_dssp             BCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCB
T ss_pred             CccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEc
Confidence            355678888888778889999999999999999999999998743 44443  333211110000012357788888887


Q ss_pred             CCCCcceEEEEEEECCCCC--------CCcceEEe-----cCCCeEEEEEEEEcCCCC
Q psy15979         79 SYTPLEEFKIKYRKIPGNE--------PSPMSNQL-----TGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        79 ~~~pi~~y~~~~r~~~~~~--------~~~~~~~L-----~~~~~Y~~rV~A~N~~G~  123 (152)
                      +.++ ..+.|.........        .....+.|     .+.+.|.|  .|.|..|.
T Consensus       124 ~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~~~n~~~~  178 (291)
T 2wim_A          124 SSPA-PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC--EGRVEARG  178 (291)
T ss_dssp             CSSC-CEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEE--EEEETTTT
T ss_pred             cCCC-CEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEE--EEEECCCC
Confidence            6543 23444322111100        01122333     33788988  56777754

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.89  E-value=5.4e-09  Score=80.36  Aligned_cols=121  Identities=7%  Similarity=-0.016  Sum_probs=72.0

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC--C-CCCCCeEEEEEEecCCCCcceEEEEEEECC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP--Q-GRLPNSYNITWMVSSYTPLEEFKIKYRKIP   94 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~--~-~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~   94 (152)
                      +.|.|.++..+|+|.|+|.|.|..|.....+.|.....|.......  . ......+.|.|.+.+.++...+.| ++...
T Consensus       194 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W-~~~~~  272 (331)
T 3u83_A          194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW-TTLNG  272 (331)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEE-EETTB
T ss_pred             EEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEE-EECCC
Confidence            4689999999999999999999999988876665432222221111  1 123588999999977654433444 33221


Q ss_pred             CCCC----CcceEEec------CCCeEEEEEEEEcCCCCCCCCCCcccccccccccccc
Q psy15979         95 GNEP----SPMSNQLT------GTNQYQNRRLVRKRFDRGNSTNGGLIVPKAKREGRQD  143 (152)
Q Consensus        95 ~~~~----~~~~~~L~------~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~~~~~~~~~  143 (152)
                      .-..    ....+.|.      +.+.|.|  .|.|.+|..  +....+.++.+..++++
T Consensus       273 ~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C--~a~N~~G~~--~~~~~l~V~~~~~~~~~  327 (331)
T 3u83_A          273 SLPKGVEAQNRTLFFKGPINYSLAGTYIC--EATNPIGTR--SGQVEVNITEAAALEHH  327 (331)
T ss_dssp             SCCTTEEEETTEEEECSCCCGGGCEEEEE--EEEETTEEE--EEEEEECCBC-------
T ss_pred             cccccceecCcEEEEeCCCccccCeEEEE--EEEeccccc--eEEEEEEEeccchhhhc
Confidence            1111    11233444      3788988  789999986  44555666655555443

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=98.89  E-value=2.1e-08  Score=71.51  Aligned_cols=113  Identities=11%  Similarity=0.092  Sum_probs=79.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-----EEEecCCCCceeecCCCCCCCCeEEEEEEecCC---CCcceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY---TPLEEFK   87 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-----~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~---~pi~~y~   87 (152)
                      ....+.|.++.+.-.-.|.+.|.|..|.....     ......|.+|..... .....+++.|.|..+..   .++..|.
T Consensus        60 ~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~  138 (197)
T 3lpw_A           60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITL-MDVTRNSVSLSWEKPEHDGGSRILGYI  138 (197)
T ss_dssp             CSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEESCCCCCCCSCEEE-EEECSSCEEEEECCCSCCTTSCCCEEE
T ss_pred             CccEEEEcCCCCCCEEEEEEEEEcCccccCCCCCccceecCCCCCCCcccEE-EeccCCeEEEEecCCCcCCCCcccEEE
Confidence            34567899999888888999999999875433     222244544432210 12346899999997532   4789999


Q ss_pred             EEEEECCCCCCC------cceE---EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         88 IKYRKIPGNEPS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        88 ~~~r~~~~~~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ++|+..+...+.      ..++   .|.+++.|.|+|.|.|..|.|.++..
T Consensus       139 v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~  189 (197)
T 3lpw_A          139 VEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQL  189 (197)
T ss_dssp             EEEEETTCSCCEEEEEESSSEEEECCCCTTCEEEEEEEEEETTEECCCEEC
T ss_pred             EEEEeCCCCceEEeecccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccC
Confidence            999987654321      1334   45669999999999999999998753

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2e-09  Score=70.22  Aligned_cols=54  Identities=17%  Similarity=0.401  Sum_probs=43.5

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~   57 (152)
                      +|..++++.+...+....|.|.+++.+|+|.|+|.|.|..|.  ..+.|..+|.|+
T Consensus        49 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~--~~l~V~~~P~pp  102 (104)
T 2e6p_A           49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAF--FGVTVQDPSGPS  102 (104)
T ss_dssp             ECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCCC--EEEEEECCCCSS
T ss_pred             ECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceEE--EEEEEcCCCCCc
Confidence            355667888887788889999999999999999999998664  445566777654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.88  E-value=4.2e-09  Score=75.28  Aligned_cols=108  Identities=15%  Similarity=0.124  Sum_probs=67.4

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEF   86 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y   86 (152)
                      +|+.+.  ..+++|.|.+++.+|+|.|+|.|.|..|.....+.|..++..|.+.... .   . ..|.|.+.+.++ ..|
T Consensus        51 ~R~~~~--~~~~sL~I~~v~~~DsG~Y~C~~~n~~~~~~~~L~V~~~~~~p~i~~~~-~---~-~~L~C~~~~~p~-p~i  122 (171)
T 1ccz_A           51 NRVYLD--TVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWEC-S---N-ATLTCEVLEGTD-VEL  122 (171)
T ss_dssp             TSEEEC--TTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEEECCCCCCEEEEET-T---T-TEEEEECSSCSS-CEE
T ss_pred             CcEEEe--CCCCeEEECCCChhhCceEEEEEeCCCCcEEEEEEEECcCCCCEEEEec-C---C-cEEEEEeCCCCC-cEE
Confidence            455553  2346899999999999999999999999666677776665544443211 1   1 378999876533 345


Q ss_pred             EEEEEECCCCCC--CcceEEecC---CCeEEEEEEEEcCCCCCCC
Q psy15979         87 KIKYRKIPGNEP--SPMSNQLTG---TNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        87 ~~~~r~~~~~~~--~~~~~~L~~---~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .|. +. +..-+  ......+.+   .+.|+|  .|.|.+|....
T Consensus       123 ~W~-~~-~~~l~~~~~~~l~~~~~~~~g~Y~C--~a~N~~~~~~~  163 (171)
T 1ccz_A          123 KLY-QG-KEHLRSLRQKTMSYQWTNLRAPFKC--KAVNRVSQESE  163 (171)
T ss_dssp             EEE-ET-TEEEEEESSSEEEEECSCCSSCEEE--EEEETTEEEEE
T ss_pred             EEE-EC-CEECcCCcceEEEEeccCCCceEEE--EEEcccCcccc
Confidence            553 21 11000  112223322   569999  77999997543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.88  E-value=2.5e-08  Score=74.27  Aligned_cols=87  Identities=22%  Similarity=0.294  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce---EEEEEEecCCC----------Cc-eeecCC--CCCCCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSGKPN----------PA-IFRSHP--QGRLPN   69 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~~~v~~~P~----------p~-~~~~~~--~~~~~~   69 (152)
                      ++|+.+...+...+|.|.+++.+|+|.|.|.|.|..+..   ...+.|...|.          ++ .+...+  ......
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  138 (242)
T 2znx_A           59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQ  138 (242)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTS
T ss_pred             CCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCC
Confidence            568888766677899999999999999999999986532   22455555442          11 111111  122468


Q ss_pred             eEEEEEEecCCCCcceEEEEEEE
Q psy15979         70 SYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        70 ~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ++.|.|.+.+.+.......||+.
T Consensus       139 ~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A          139 TLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eEEEEEEEEccccCCcceeeEee
Confidence            89999998764311223345554

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=5.7e-09  Score=68.73  Aligned_cols=52  Identities=19%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCc
Q psy15979          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPA   57 (152)
Q Consensus         6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~   57 (152)
                      ++|+.+... .....|.|.+++.+|+|.|+|.|.|.+|.+...  +.|...|.+|
T Consensus        53 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           53 SDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             CSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCSCCS
T ss_pred             CCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCCCCC
Confidence            578888764 344589999999999999999999999998875  4555555543

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.87  E-value=7.4e-09  Score=69.47  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=52.1

Q ss_pred             CCCeEEEEEEecC---CCCcceEEEEEEECCCC-CCC------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         67 LPNSYNITWMVSS---YTPLEEFKIKYRKIPGN-EPS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        67 ~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~-~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      ..+++.|+|..+.   +.+|..|.|+|+..... .+.      ...+   .|.+++.|.|||.|.|..|.|+++....+.
T Consensus        31 ~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~  110 (120)
T 2crm_A           31 HSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ  110 (120)
T ss_dssp             ETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCC
T ss_pred             CCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEeccccEEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEE
Confidence            4689999999753   35899999999987542 221      1334   366699999999999999999999876554


Q ss_pred             cc
Q psy15979        134 PK  135 (152)
Q Consensus       134 ~~  135 (152)
                      ..
T Consensus       111 T~  112 (120)
T 2crm_A          111 TP  112 (120)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.87  E-value=5.2e-09  Score=85.82  Aligned_cols=110  Identities=5%  Similarity=0.006  Sum_probs=62.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECC-
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP-   94 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~-   94 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|...-.| .+...+...  .. .|.|.+.+.++. .+.|...... 
T Consensus       373 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P-~i~~~~~~~--~g-~l~C~~~g~P~p-~i~W~~~~~~~  447 (524)
T 2ec8_A          373 YVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP-EILTYDRLV--NG-MLQCVAAGFPEP-TIDWYFCPGTE  447 (524)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE-EEEEEECCS--SS-CEEEEEEEESCC-EEECCCC----
T ss_pred             eEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCC-eEeecccCc--Cc-EEEEEEEeecCC-EEEEEECCCcc
Confidence            45789999999999999999999999998887776654323 222211111  12 888888765433 3443221110 


Q ss_pred             --------CCC----------CCcce----EE---ecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         95 --------GNE----------PSPMS----NQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        95 --------~~~----------~~~~~----~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                              ...          .+...    ..   .++.+.|.|  .|.|.+|....+....+
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C--~a~N~~G~~~~~~~l~V  508 (524)
T 2ec8_A          448 QRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC--KAYNDVGKTSAYFNFAF  508 (524)
T ss_dssp             ------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----C--EEECSSCEEECCCCCCC
T ss_pred             cccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEE--EEEcCCCceEEEEEEEE
Confidence                    000          01111    11   245889988  78999998866553333

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1.8e-08  Score=65.45  Aligned_cols=82  Identities=9%  Similarity=0.067  Sum_probs=57.9

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEec----CCCCcceEEEEEEECCCCCC-----CcceE---EecCCCeEEEEEEEEcC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEP-----SPMSN---QLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~-----~~~~~---~L~~~~~Y~~rV~A~N~  120 (152)
                      +|.+|..... .....+++.|.|..+    ...++..|.++|+.......     ....+   .|.+++.|.|+|.|.|.
T Consensus         8 pp~~P~~l~~-~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   86 (103)
T 2edy_A            8 PSGFPQNLHV-TGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGLKPDTTYDIKVRAWTS   86 (103)
T ss_dssp             CSCCCEEEEC-SSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCCEEEEEESSSCCEECSCCTTCCEEEECCEECS
T ss_pred             CCCCCeeeEE-EecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCccEEEcCCcceEEEcCCCCCCEEEEEEEEECC
Confidence            4445543321 233568999999987    34588999999998765321     11233   46669999999999999


Q ss_pred             CCCCCCCCCcccccc
Q psy15979        121 FDRGNSTNGGLIVPK  135 (152)
Q Consensus       121 ~G~g~~s~~~~~~~~  135 (152)
                      .|.|.++....+.++
T Consensus        87 ~G~g~~S~~~~~~T~  101 (103)
T 2edy_A           87 KGSGPLSPSIQSRTM  101 (103)
T ss_dssp             SCBCCCCCCCCCCCC
T ss_pred             CCCCCCCCCEEEEec
Confidence            999999987766543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.87  E-value=2e-09  Score=68.82  Aligned_cols=42  Identities=29%  Similarity=0.499  Sum_probs=37.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      +|..++++.+..++....|.|.+++.+|+|.|+|.|.|..+.
T Consensus        35 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   76 (84)
T 2lu7_A           35 RLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQDSRI   76 (84)
T ss_dssp             ECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTTCEE
T ss_pred             EccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCEEEE
Confidence            678889999998888899999999999999999999876443

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=98.87  E-value=5.3e-08  Score=70.88  Aligned_cols=112  Identities=16%  Similarity=0.175  Sum_probs=78.9

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EEE-ecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LEL-SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v-~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .....+.|.++.+.-.-.+.+.|.|..|..... +.. ...|.|..+..  .....+++.|+|..+...++..|.+.|+.
T Consensus        74 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~t~~~~p~P~~l~~--~~~~~~sv~l~W~~p~~~~i~~Y~v~~~~  151 (203)
T 2gee_A           74 SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRF--TNIGPDTMRVTWAPPPSIDLTNFLVRYSP  151 (203)
T ss_dssp             TTCCEEEECSCCTTCEEEEEEEEESSSCBCCCEEEEEECCCCCCEEEEE--EEEETTEEEEEEECCSSCCCSEEEEEEEE
T ss_pred             CCccEEEeCCCCCCCEEEEEEEEEeCCCccccEeeeecCCCcCCCceEE--EEcCCCEEEEEEcCCCCCCccEEEEEEEE
Confidence            345678899999888888889999988865432 222 23443333322  12346899999998766689999999998


Q ss_pred             CCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         93 IPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        93 ~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .....        ....++.   |.+++.|.|+|.|.|..|.|.|..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~  198 (203)
T 2gee_A          152 VKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR  198 (203)
T ss_dssp             TTCGGGCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CCCCCccEEEEcCCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCee
Confidence            54321        1123444   556999999999999999998764

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3.3e-09  Score=70.94  Aligned_cols=47  Identities=21%  Similarity=0.232  Sum_probs=39.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ++|+.+...+..+.|.|.+++.+|+|.|+|.|+|..|.+...+.|..
T Consensus        67 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V  113 (118)
T 2e7c_A           67 TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV  113 (118)
T ss_dssp             CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEE
T ss_pred             CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEE
Confidence            46777777777888999999999999999999999998887766553

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.86  E-value=2.3e-08  Score=76.93  Aligned_cols=114  Identities=13%  Similarity=0.180  Sum_probs=69.1

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCc-------eEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGK-------HRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEF   86 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~-------~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y   86 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|.       ....+.|.+.+.+|.+...+  .......+.|.|.+..  +...|
T Consensus       172 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~--~~~~~  249 (316)
T 3vh8_G          172 SKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRS--SYDMY  249 (316)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESS--CCSEE
T ss_pred             ceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCC--CCcEE
Confidence            4568999999999999999999999884       33456666665555544332  1234688999999864  33345


Q ss_pred             EEEEEECCCCC---------CCc--ceEE---ecCCCeEEEEEEEEcCCC---CCCCCCCccccc
Q psy15979         87 KIKYRKIPGNE---------PSP--MSNQ---LTGTNQYQNRRLVRKRFD---RGNSTNGGLIVP  134 (152)
Q Consensus        87 ~~~~r~~~~~~---------~~~--~~~~---L~~~~~Y~~rV~A~N~~G---~g~~s~~~~~~~  134 (152)
                      .|. +.-....         ...  ..+.   +++.+.|.|  .|.|..|   ++.+|+...+.+
T Consensus       250 ~W~-k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~D~G~Y~C--~a~n~~~~~~~s~~S~~~~l~V  311 (316)
T 3vh8_G          250 HLS-REGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRC--FGSFRHSPYEWSDPSDPLLVSV  311 (316)
T ss_dssp             EEE-ETTSSCCEEEECEECTTSCEEEEEECC-----CEEEE--EEEBTTBTTEECCCCCCEEC--
T ss_pred             EEE-ECCCcCCCceeceeccCCceeEEEEcCCcCCCEEEEE--EeecCCCchhccCCCCcEEEEE
Confidence            443 3211110         000  1222   226899999  5788766   466777665444

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.86  E-value=9.4e-10  Score=71.39  Aligned_cols=43  Identities=21%  Similarity=0.409  Sum_probs=37.8

Q ss_pred             CcccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         1 ~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      ++|..+++|.+..++....|.|.+++.+|+|.|+|+|.|..+.
T Consensus        44 ~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   86 (91)
T 2lvc_A           44 QEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDECAY   86 (91)
T ss_dssp             SCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSCEEE
T ss_pred             EEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcceEEE
Confidence            3678889999999888999999999999999999999886443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.86  E-value=1.6e-08  Score=73.51  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=68.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCC-CceeecC-CC---CCCCCeEEEEEEecCCCCcceEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPN-PAIFRSH-PQ---GRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~-p~~~~~~-~~---~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|.....+.|.  ..+. ++.+... +.   ......+.|.|.+.+.++. .+.|
T Consensus        74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W  152 (231)
T 3ojm_B           74 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQW  152 (231)
T ss_dssp             GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EEEE
T ss_pred             CcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EEEE
Confidence            345899999999999999999999999887765544  3332 2222211 11   1135778999988765433 4444


Q ss_pred             EEEECCCCC--------------------CCcceEEec-----CCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         89 KYRKIPGNE--------------------PSPMSNQLT-----GTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        89 ~~r~~~~~~--------------------~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      .......+.                    .....+.|.     +.+.|.|  .|.|.+|....+....+
T Consensus       153 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~V  219 (231)
T 3ojm_B          153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYIC--KVSNYIGQANQSAWLTV  219 (231)
T ss_dssp             EEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEE--EEEETTEEEEEEEEEEE
T ss_pred             EECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEE--EEEeccceEeeEEEEEE
Confidence            331110000                    001123333     3788988  67999998744433333

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.86  E-value=5e-09  Score=70.43  Aligned_cols=64  Identities=11%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEEec---CCCCcceEEEEEEECCCCCCC--------cceEE---ecCCCeEEEEEEEEcCCCC-CCCCCC
Q psy15979         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPS--------PMSNQ---LTGTNQYQNRRLVRKRFDR-GNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~~--------~~~~~---L~~~~~Y~~rV~A~N~~G~-g~~s~~  129 (152)
                      .+.+++.|.|..+   ++.+|..|.|+|+......+.        ...+.   |.+++.|+|||.|.|..|. |+++..
T Consensus        22 v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~~s~~S~~  100 (112)
T 1bpv_A           22 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEP  100 (112)
T ss_dssp             EETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred             eeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEEECCCCCCCCCCC
Confidence            3578999999953   456899999999987543321        23444   5569999999999999996 998863

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.86  E-value=6.5e-08  Score=74.72  Aligned_cols=117  Identities=10%  Similarity=0.085  Sum_probs=70.5

Q ss_pred             eeCCCCCEEEEEEEEcCCCceEE-EEEEe----cCCCCceeecCCCCC-----CCCeEEEEEEecC--CCCcceEEEEEE
Q psy15979         24 KVVASDFGNYSCEATNPMGKHRA-YLELS----GKPNPAIFRSHPQGR-----LPNSYNITWMVSS--YTPLEEFKIKYR   91 (152)
Q Consensus        24 ~v~~~D~G~YtC~A~N~~G~~~~-~~~v~----~~P~p~~~~~~~~~~-----~~~~~~L~W~~~~--~~pi~~y~~~~r   91 (152)
                      ++.....-.+.|.|.|.+|...+ .+.+.    .+|.||.........     ...++.|+|..+.  ...+..|.|+|+
T Consensus       168 ~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~Y~v~y~  247 (313)
T 2d9q_B          168 HLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHK  247 (313)
T ss_dssp             GCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEE
T ss_pred             ccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEEEEEEEc
Confidence            35555555556999999998654 22222    357777554322111     3579999999853  223579999999


Q ss_pred             -ECCCCCCC--------cceEE---ecCCCeEEEEEEEEcCCCCCC---CCCCccccc-cccccc
Q psy15979         92 -KIPGNEPS--------PMSNQ---LTGTNQYQNRRLVRKRFDRGN---STNGGLIVP-KAKREG  140 (152)
Q Consensus        92 -~~~~~~~~--------~~~~~---L~~~~~Y~~rV~A~N~~G~g~---~s~~~~~~~-~~~~~~  140 (152)
                       ......+.        ...+.   |.+++.|+|||+|+|..|.|.   +|....+.+ +....|
T Consensus       248 ~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~~  312 (313)
T 2d9q_B          248 PQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAAP  312 (313)
T ss_dssp             ESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC-----
T ss_pred             cCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCCC
Confidence             55443322        12344   555999999999999988775   555554433 344433

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.86  E-value=4.3e-08  Score=72.81  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCC-----------------CCceeecCC--
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP-----------------NPAIFRSHP--   63 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P-----------------~p~~~~~~~--   63 (152)
                      .+|+.+...+...+|.|.+++.+|+|.|.|.|.|..|....   .+.|...|                 .++.....+  
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (250)
T 3esu_F           62 PSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE  141 (250)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCE
T ss_pred             CCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCce
Confidence            47888877777889999999999999999999998664322   34444321                 111111111  


Q ss_pred             CCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         64 QGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        64 ~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .......+.|.|.+.+..+......||+.
T Consensus       142 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F          142 LVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             EECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             EEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            11246789999998764321234445665

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.86  E-value=7.3e-08  Score=71.21  Aligned_cols=112  Identities=14%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceE----EEEEEecCCCCceeecCCC--CCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHR----AYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~----~~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .|.|.+++.+|+|.|+|.|.|..|...    ..+.|.+.+.+|.+...+.  ......++|.|...+.. ...|.| ++.
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~-~~~~~W-~k~  142 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIP-FDRFSL-AKE  142 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSC-CSEEEE-EET
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCC-CCEEEE-EEC
Confidence            899999999999999999999887433    2455555444444433221  12468899999654333 334544 333


Q ss_pred             CCCCCC------CcceEEe-----cCCCeEEEEEEEEcC---CCCCCCCCCccccc
Q psy15979         93 IPGNEP------SPMSNQL-----TGTNQYQNRRLVRKR---FDRGNSTNGGLIVP  134 (152)
Q Consensus        93 ~~~~~~------~~~~~~L-----~~~~~Y~~rV~A~N~---~G~g~~s~~~~~~~  134 (152)
                      ...-..      ....+.|     ++.+.|.|  .|.|.   ..++.+++...+.+
T Consensus       143 g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C--~a~n~~~~~~~s~~S~~~~l~V  196 (218)
T 1uct_A          143 GELSLPQHQSGEHPANFSLGPVDLNVSGIYRC--YGWYNRSPYLWSFPSNALELVV  196 (218)
T ss_dssp             TCSSCCSEEECSSSEEEECCSCCGGGCEEEEE--EEECTTSTTEECCCCCCEEEEE
T ss_pred             CCcccccccCCCccCEEEEccCCcccCEEEEE--EEEcCCCCCcCCCCCCcEEEEE
Confidence            211110      1123333     34889999  56775   45677777664443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.85  E-value=2.7e-08  Score=71.47  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCce-----EEEEEEe--cCCCCceeecCCCCCCCCeEEEEEEec-CCCCcceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVS-SYTPLEEFK   87 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~-~~~pi~~y~   87 (152)
                      ...+|.|.+++.+|+|.|+|.|.|..|..     ...+.|.  ..+.+|...... ......+.|.|.+. ++++ ..+.
T Consensus        63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~g~~~~l~C~~~~g~P~-p~i~  140 (201)
T 1dr9_A           63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE-IPTSNIRRIICSTSGGFPE-PHLS  140 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE-CSSTTEEEEEEEEEEESSC-EEEE
T ss_pred             CCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEecc-CCCCCeEEEEEecCCccCC-CEEE
Confidence            45689999999999999999999988754     2344444  433333332211 12356889999984 5543 3444


Q ss_pred             E
Q psy15979         88 I   88 (152)
Q Consensus        88 ~   88 (152)
                      |
T Consensus       141 W  141 (201)
T 1dr9_A          141 W  141 (201)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.84  E-value=6.6e-09  Score=73.55  Aligned_cols=102  Identities=10%  Similarity=0.022  Sum_probs=64.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-CCCCCeEEEEEEecCCCCcceEEEEEEECC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKIKYRKIP   94 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~   94 (152)
                      ....|.|.+++.+|+|.|+|.|.|..++....+.|.  +.+........ ......+.|.|.+.+..|...+.|. +...
T Consensus        49 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~-~~g~  125 (176)
T 1f2q_A           49 TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF--SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYY-KDGE  125 (176)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEE-ETTE
T ss_pred             CceEEEEeccceecCEEEEEEcCCccccccEEEEEe--CcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEE-ECCE
Confidence            457899999999999999999999988887777776  22222221111 1246789999999765565555553 3210


Q ss_pred             C-C-CCCcceEE-----ecCCCeEEEEEEEEcCCC
Q psy15979         95 G-N-EPSPMSNQ-----LTGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        95 ~-~-~~~~~~~~-----L~~~~~Y~~rV~A~N~~G  122 (152)
                      . . ......+.     .++.+.|.|  .|.|..|
T Consensus       126 ~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~~  158 (176)
T 1f2q_A          126 ALKYWYENHNISITNATVEDSGTYYC--TGKVWQL  158 (176)
T ss_dssp             ECCSCCCSSEEEESSCCGGGCEEEEE--EEEETTE
T ss_pred             EEeeecCCCeEEECCCCcccCEEEEE--EEEeCCc
Confidence            0 0 01122333     334789998  6688744

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.84  E-value=2.8e-08  Score=74.62  Aligned_cols=37  Identities=22%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             CCcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         6 ~~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ++|+.+.  ......+|.|.+++.+|+|.|.|.|.|..|
T Consensus        62 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           62 VNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGT  100 (256)
T ss_dssp             STTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTC
T ss_pred             CCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCC
Confidence            4577663  345678899999999999999999999876

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=98.84  E-value=3e-08  Score=65.61  Aligned_cols=78  Identities=9%  Similarity=0.042  Sum_probs=54.2

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCCCCCC--------cceE---EecCCCeEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNEPS--------PMSN---QLTGTNQYQNRRLV  117 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~~--------~~~~---~L~~~~~Y~~rV~A  117 (152)
                      +.|.+|..... .....+++.|+|..+.   ..+|..|.|+|+......+.        ...+   .|.+++.|.|||.|
T Consensus         7 ~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   85 (111)
T 1x5y_A            7 GPTSAPQHLTV-EDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVG   85 (111)
T ss_dssp             SCCCCCEEEEE-EEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEE
T ss_pred             CCCcCCCCCEE-EeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEEE
Confidence            34555543211 1234689999999753   34799999999886543311        1333   46669999999999


Q ss_pred             EcCCCCCCCCCCc
Q psy15979        118 RKRFDRGNSTNGG  130 (152)
Q Consensus       118 ~N~~G~g~~s~~~  130 (152)
                      .|..|.|.++...
T Consensus        86 ~n~~G~s~~S~~~   98 (111)
T 1x5y_A           86 VNIAGRSEPATLL   98 (111)
T ss_dssp             EETTEECCCCCCS
T ss_pred             EcCCcCCCCccCC
Confidence            9999999998654

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.83  E-value=9.2e-09  Score=67.87  Aligned_cols=69  Identities=7%  Similarity=0.065  Sum_probs=51.1

Q ss_pred             CCCCeEEEEEEecC---CCCcceEEEEEEECCCCC-CC------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         66 RLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNE-PS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        66 ~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~-~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ...+++.|.|..+.   ..+|..|.|+|+...... +.      ...+   .|.+++.|+|||.|.|..|.|.++....+
T Consensus        19 ~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~   98 (109)
T 1x5x_A           19 AGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEF   98 (109)
T ss_dssp             ECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEE
T ss_pred             ccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEeCCccEEEECCCCCCCEEEEEEEEEeCCCCcCCccCEEe
Confidence            35689999999753   238899999998765421 11      1334   46669999999999999999999876554


Q ss_pred             cc
Q psy15979        133 VP  134 (152)
Q Consensus       133 ~~  134 (152)
                      +.
T Consensus        99 ~T  100 (109)
T 1x5x_A           99 TT  100 (109)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.83  E-value=3.4e-08  Score=71.66  Aligned_cols=116  Identities=16%  Similarity=0.081  Sum_probs=67.8

Q ss_pred             CcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCceeecCCCCCCCCeEEEEEEecCCC
Q psy15979          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSSYT   81 (152)
Q Consensus         7 ~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~   81 (152)
                      +|+.+..+   ....+|.|.+++.+|+|.|+|.|.| .|.....+.|  ..+|..+.............+.|.|.+.+++
T Consensus        66 ~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P  144 (222)
T 3sbw_C           66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYP  144 (222)
T ss_dssp             SSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBS
T ss_pred             CceEEccccccCCEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCC
Confidence            45555422   2457899999999999999999999 6666555444  4444333222101122457899999987754


Q ss_pred             CcceEEEEEEECCCCCC------------Cc----ce--EEecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         82 PLEEFKIKYRKIPGNEP------------SP----MS--NQLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        82 pi~~y~~~~r~~~~~~~------------~~----~~--~~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      + ..+.| ++..+....            ..    ..  ..-.+.+.|.|  .|.|.+|....+
T Consensus       145 ~-p~i~W-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C--~a~n~~g~~~~~  204 (222)
T 3sbw_C          145 K-AEVIW-TSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYC--TFRRLDPEENHT  204 (222)
T ss_dssp             C-CEEEE-EETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEE--EEEETTTTEEEE
T ss_pred             C-CeEEE-EECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEE--EEEeCccceeeE
Confidence            3 33443 332111000            00    01  12244789998  679999966444

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.83  E-value=1.1e-07  Score=70.97  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE-----EEEEEecCCC------------------CceeecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-----AYLELSGKPN------------------PAIFRSH   62 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-----~~~~v~~~P~------------------p~~~~~~   62 (152)
                      .+|+.+...+...+|.|.+++.+|+|.|.|.|.|..|...     ..+.|...|.                  ++.+...
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (256)
T 3ux9_B           62 PDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVES  141 (256)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEE
T ss_pred             CCcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcC
Confidence            4688887777788999999999999999999999765322     2355554431                  1111111


Q ss_pred             C--CCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         63 P--QGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        63 ~--~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      +  ......++.|.|.+.+..+......||+.
T Consensus       142 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B          142 GGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCeEEcCCCeEEEEEEEeCCcccccEEEEEEE
Confidence            1  11246889999998764321223444554

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=98.83  E-value=1.6e-07  Score=66.90  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=78.9

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEEC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~   93 (152)
                      .....+.|.++.+.-.-.+.+.|.|..|.... .+.+.-.|.+|..... .....+++.|+|..+. .++..|.+.|+..
T Consensus        55 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~~~s~~~~~~~~t~p~~P~~l~~-~~~~~~sv~l~W~~p~-~~i~~Y~v~~~~~  132 (186)
T 1qr4_A           55 VDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISF-SDITENSATVSWTPPR-SRVDSYRVSYVPI  132 (186)
T ss_dssp             TTCSEEEEESCCSSCEEEEEEEEESSSCBCCCEEEEEECCCCCCSCEEE-ESCCSSCEEEEECCCS-SCCSEEEEEEEET
T ss_pred             CCCCEEEECCCCCCCEEEEEEEEEcCCccCCCEEEEEECCCCCCCccEE-EEeCCCEEEEEEECCC-CcccEEEEEEEeC
Confidence            34567889999988888889999998665543 3444444554432211 1235689999999765 4689999999987


Q ss_pred             CCCCC-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         94 PGNEP-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        94 ~~~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .....       ...++.   |.+++.|.|+|.|.|..|.|+|...
T Consensus       133 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~~  178 (186)
T 1qr4_A          133 TGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISG  178 (186)
T ss_dssp             TCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTEECCCEEE
T ss_pred             CCCCceEEEcCCCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEEE
Confidence            64321       123444   5569999999999999999987643

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.83  E-value=5e-09  Score=70.14  Aligned_cols=90  Identities=16%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             CCceEEEEE--EecCCCCceeec-CCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCC--------CCcceE---E
Q psy15979         41 MGKHRAYLE--LSGKPNPAIFRS-HPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE--------PSPMSN---Q  104 (152)
Q Consensus        41 ~G~~~~~~~--v~~~P~p~~~~~-~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~--------~~~~~~---~  104 (152)
                      +|..+..+.  +...|.||.... .......+++.|+|..+  ++.+|..|.++|+......        .....+   .
T Consensus         3 ~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (121)
T 1wf5_A            3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKG   82 (121)
T ss_dssp             CCCCCCCCCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEES
T ss_pred             CCcccceEEEEEeeCCccCCCcceeeEeccCCEEEEEEcCCCCCCCcceEEEEEEEcCCCCceEeEcccCCCccEEEECC
Confidence            455544433  345676654330 11234568999999875  3468999999998764211        111333   3


Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      |.+++.|+|||.|.|..|.|.++...
T Consensus        83 L~p~t~Y~frV~A~n~~G~s~~S~~~  108 (121)
T 1wf5_A           83 LVPARSYQFRLCAVNDVGKGQFSKDT  108 (121)
T ss_dssp             CCTTCEEEEEEEEEESSCEEEECCCC
T ss_pred             cCCCCEEEEEEEEEcCCccCCCcCCc
Confidence            66799999999999999999998764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.83  E-value=3.2e-08  Score=71.63  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=52.7

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeec-CCC--CCCCCeEEEEEEecCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSSY   80 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~-~~~--~~~~~~~~L~W~~~~~   80 (152)
                      +|+.+...+....|.|.+++.+|+|.|+|.|.|..|....   .+.|...+.+|.+.. .+.  ......+.|.|.+.+.
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~  139 (213)
T 3d9a_L           60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  139 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeee
Confidence            6888877777889999999999999999999999886432   455555443444332 111  1124689999998763

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.83  E-value=1.4e-08  Score=68.78  Aligned_cols=78  Identities=14%  Similarity=0.093  Sum_probs=54.6

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEEC---CCCCC----------CcceE---EecCCCeEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKI---PGNEP----------SPMSN---QLTGTNQYQN  113 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~---~~~~~----------~~~~~---~L~~~~~Y~~  113 (152)
                      +.|.||..... .....+++.|.|...  ++.+|..|.|+|+..   ....+          ....+   .|.+++.|+|
T Consensus        16 ~~P~~P~~l~~-~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   94 (124)
T 1wis_A           16 ELPGPPTNLGI-SNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSF   94 (124)
T ss_dssp             CCCCCCEEEEE-ESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECC
T ss_pred             CCCccCCCCEE-EEecCCEEEEEEECCCCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCCCCEEEE
Confidence            45666654321 123578999999864  457899999999873   22221          11233   4666999999


Q ss_pred             EEEEEcCCCCCCCCCCc
Q psy15979        114 RRLVRKRFDRGNSTNGG  130 (152)
Q Consensus       114 rV~A~N~~G~g~~s~~~  130 (152)
                      ||.|.|.+|.|+++...
T Consensus        95 rV~A~N~~G~s~~S~~~  111 (124)
T 1wis_A           95 RMRQVNIVGTSPPSQPS  111 (124)
T ss_dssp             CCEEECSSCBCCCCCCC
T ss_pred             EEEEEECCccCCCcCCc
Confidence            99999999999999753

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.83  E-value=5.7e-09  Score=69.75  Aligned_cols=52  Identities=23%  Similarity=0.224  Sum_probs=40.4

Q ss_pred             ccCCCcEEEEEcC----CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCC
Q psy15979          3 LETTERRIMETRG----SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (152)
Q Consensus         3 l~~~~r~~i~~~~----~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P   54 (152)
                      |..+.++.+....    ..+.|.|.+++.+|+|.|+|+|+|.+|.+++++.|....
T Consensus        46 l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  101 (118)
T 1wwc_A           46 LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLK  101 (118)
T ss_dssp             CCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred             CCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEcc
Confidence            4455555554221    466899999999999999999999999999988876443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.82  E-value=1e-07  Score=69.92  Aligned_cols=74  Identities=26%  Similarity=0.397  Sum_probs=50.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cC-CCCceeec-CCC---CCCCCeEEEEEEecCCCCcceEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GK-PNPAIFRS-HPQ---GRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~-P~p~~~~~-~~~---~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|.....+.|.  .. |.++.... .+.   ......+.|.|.+.+.++. .+.|
T Consensus        70 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v~W  148 (241)
T 3grw_A           70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQW  148 (241)
T ss_dssp             GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EEEE
T ss_pred             cceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EEEE
Confidence            455899999999999999999999999887765554  32 22333221 111   1235789999999776443 4555


Q ss_pred             EE
Q psy15979         89 KY   90 (152)
Q Consensus        89 ~~   90 (152)
                      ..
T Consensus       149 ~~  150 (241)
T 3grw_A          149 LK  150 (241)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.82  E-value=1.9e-08  Score=71.74  Aligned_cols=115  Identities=17%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec--CCC--CceeecCC---CCCCCCeEEEEEEe
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPN--PAIFRSHP---QGRLPNSYNITWMV   77 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~--~P~--p~~~~~~~---~~~~~~~~~L~W~~   77 (152)
                      +.++.+.. .+....|.|.+++.+|+|.|+|.|.|..|.....+.|..  .|.  .+.+...+   .......+.|.|.+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~  128 (197)
T 2j8h_A           49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF  128 (197)
T ss_dssp             SSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE
Confidence            45777754 455679999999999999999999999998877655543  221  01110000   01235678899988


Q ss_pred             cCCCCcceEEEEEEECC---CCCC-------CcceE------EecCCCeEEEEEEEEcCCCCC
Q psy15979         78 SSYTPLEEFKIKYRKIP---GNEP-------SPMSN------QLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        78 ~~~~pi~~y~~~~r~~~---~~~~-------~~~~~------~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .+.++. .+.|. +...   ....       ....+      ...+.+.|.|  .|.|.+|..
T Consensus       129 ~g~p~p-~i~W~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C--~a~N~~g~~  187 (197)
T 2j8h_A          129 SGKPDP-VITWQ-KGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV--CAKNRFGID  187 (197)
T ss_dssp             EEESCC-EEEEE-ESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEE--EEEETTEEE
T ss_pred             EecCCC-cEEEE-ECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEE--EEEeCCCcE
Confidence            765432 34443 3211   0000       01122      2333788988  679999875

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=2.6e-08  Score=65.21  Aligned_cols=82  Identities=22%  Similarity=0.335  Sum_probs=58.1

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-----cceE---EecCCCeEEEEEEEEcCC
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-----PMSN---QLTGTNQYQNRRLVRKRF  121 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-----~~~~---~L~~~~~Y~~rV~A~N~~  121 (152)
                      +.|.||..... .....+++.|+|..+.  +.+|..|.|+|+......+.     ...+   .|.+++.|.|+|.|.|..
T Consensus         6 ~~P~~P~~l~~-~~~~~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   84 (106)
T 2ed8_A            6 SGPGPVENLQA-VSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRY   84 (106)
T ss_dssp             CCCCCCEEEEE-ECSSTTEEEEEEECCSSCSSCCCEEEEEEEETTTCCEEEEEECSSCEEEESCCTTCEEEEEEEEECSS
T ss_pred             CCCcCCceeEE-EecCCCEEEEEECCCCCCCCCeeEEEEEEEECCCCceEEEeCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            45666543321 1234689999999763  35799999999987654311     1333   466699999999999999


Q ss_pred             CCCCCCCCccccc
Q psy15979        122 DRGNSTNGGLIVP  134 (152)
Q Consensus       122 G~g~~s~~~~~~~  134 (152)
                      |.|.++....+.+
T Consensus        85 G~g~~S~~~~~~T   97 (106)
T 2ed8_A           85 GPGVSTDDITVVT   97 (106)
T ss_dssp             CEEEECCCEEEEC
T ss_pred             ccCCCcCCEEEEc
Confidence            9999887776544

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.81  E-value=5.9e-08  Score=73.68  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce---EEEEEEecCCC-----------CceeecCC---CCCCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSGKPN-----------PAIFRSHP---QGRLP   68 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~~~v~~~P~-----------p~~~~~~~---~~~~~   68 (152)
                      ++|+.+...+...+|.|.+++.+|+|.|.|.|.|..|..   ...+.|...|.           |+.....+   .....
T Consensus        70 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G  149 (276)
T 3auv_A           70 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPG  149 (276)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTT
T ss_pred             CCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCC
Confidence            568888776777899999999999999999999986542   12344444331           22221111   11246


Q ss_pred             CeEEEEEEecCCCCcceEEEEEEE
Q psy15979         69 NSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        69 ~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ..+.|.|.+.+..+......||+.
T Consensus       150 ~~v~L~C~~~g~~~~~~~v~W~k~  173 (276)
T 3auv_A          150 GSLRLSCAASGFTISDYWIHWVRQ  173 (276)
T ss_dssp             CCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CeEEEEEEecCccCCCCEEEEEEc
Confidence            889999998765432223444554

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.81  E-value=1e-08  Score=65.99  Aligned_cols=49  Identities=22%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             ccCCCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          3 LETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         3 l~~~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      |..+.++.+. ..+....|.|.+++.+|+|.|+|+|.|..|...+.+.|.
T Consensus        46 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   95 (99)
T 1g1c_A           46 IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL   95 (99)
T ss_dssp             CCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEE
Confidence            4555666554 356678899999999999999999999999998876654

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=2.5e-08  Score=65.81  Aligned_cols=78  Identities=8%  Similarity=0.058  Sum_probs=54.5

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLV  117 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A  117 (152)
                      .+|.+|..... .....+++.|.|..+.   ..++..|.|+|+......+        ....+.   |.+++.|+|||.|
T Consensus         6 ~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   84 (110)
T 2yuw_A            6 SGTSPPTLLTV-DSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKA   84 (110)
T ss_dssp             CCSCCCEEEEE-EEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCCccEE-EeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEE
Confidence            45666543211 1234689999999753   3589999999998654321        123444   5569999999999


Q ss_pred             EcCCCCCCCCCCc
Q psy15979        118 RKRFDRGNSTNGG  130 (152)
Q Consensus       118 ~N~~G~g~~s~~~  130 (152)
                      .|..|.|+++...
T Consensus        85 ~n~~G~s~~S~~~   97 (110)
T 2yuw_A           85 VNAAGASEPKYYS   97 (110)
T ss_dssp             EETTEECCCEECS
T ss_pred             EcCCcCCCCcCCC
Confidence            9999999988643

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.81  E-value=7.3e-08  Score=71.54  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecCCC----------Cc-eeecCC--CCCCCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN----------PA-IFRSHP--QGRLPN   69 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~P~----------p~-~~~~~~--~~~~~~   69 (152)
                      ++|+.+...+...+|.|.+++.+|+|.|.|.|.|..+...   ..+.|...|.          |+ .+...+  ......
T Consensus        64 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  143 (247)
T 1svz_A           64 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGE  143 (247)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTC
T ss_pred             CCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCC
Confidence            4688887666778999999999999999999999865421   2455554331          22 222111  122467


Q ss_pred             eEEEEEEecCCCCcceEEEEEEE
Q psy15979         70 SYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        70 ~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ++.|.|.+.+..+......||+.
T Consensus       144 ~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A          144 TVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEE
T ss_pred             cEEEEEEEcCcccCCcEEEEEEe
Confidence            89999998765321223344554

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.81  E-value=4e-08  Score=74.64  Aligned_cols=120  Identities=16%  Similarity=0.053  Sum_probs=70.6

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC--CCC--ceeecCC---CCCCCCeEEEEEEe
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK--PNP--AIFRSHP---QGRLPNSYNITWMV   77 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~--P~p--~~~~~~~---~~~~~~~~~L~W~~   77 (152)
                      +.++.+.. .+..+.|.|.+++.+|+|.|+|.|.|..|.....+.|...  |..  +.....+   .......+.|.|.+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~  128 (305)
T 2nzi_A           49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF  128 (305)
T ss_dssp             SSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE
T ss_pred             CCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE
Confidence            45677654 4556799999999999999999999999988776555432  211  1100000   01235788999988


Q ss_pred             cCCCCcceEEEEEEECCC-CCC---------CcceEE----ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         78 SSYTPLEEFKIKYRKIPG-NEP---------SPMSNQ----LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        78 ~~~~pi~~y~~~~r~~~~-~~~---------~~~~~~----L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+.++. .+.| ++.... ...         ....+.    +.....+.|++.|.|.+|....+
T Consensus       129 ~g~p~p-~i~W-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~  190 (305)
T 2nzi_A          129 SGKPDP-VITW-QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT  190 (305)
T ss_dssp             EEESCC-EEEE-EESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             CCCCCC-EEEE-EECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeE
Confidence            765432 3443 332111 000         011222    33344445555889999987544

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=98.81  E-value=1.9e-08  Score=67.57  Aligned_cols=64  Identities=19%  Similarity=0.310  Sum_probs=49.2

Q ss_pred             CCCeEEEEEEec--CCCCcceEEEEEEECC-CCCC---------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIP-GNEP---------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~-~~~~---------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+++.|.|...  ++.+|..|.|+|+... ...+         ....+   .|.+++.|+|||.|.|..|.|.++...
T Consensus        30 ~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~  108 (121)
T 1x4z_A           30 SETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPS  108 (121)
T ss_dssp             CSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCCCC
T ss_pred             cCCEEEEEEECCCCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEEEEEEEEEcCCCcCCCcCCC
Confidence            468999999963  3468999999999875 2222         11333   466699999999999999999998755

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.80  E-value=6.1e-09  Score=73.92  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=67.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE-E--EEEEecCCCCceeecCCC---CCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-A--YLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~--~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~   79 (152)
                      +.|+.+..+  ...|.|.+++.+|+|.|+|.+.|..|... .  .+.|...|.   +...+.   ......+.|.|.+.+
T Consensus        52 ~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~g  126 (192)
T 2iep_A           52 DTRYSIREN--GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK---ITRPPINVKIIEGLKAVLPCTTMG  126 (192)
T ss_dssp             CTTEEEEGG--GTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEE---EEECCCCEEEETTSCEEECCEEEE
T ss_pred             CccEEEcCC--ccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCc---cccCCcceEEeCCCcEEEEEEEec
Confidence            567777643  35799999999999999999999999843 3  344444332   111111   113567889998866


Q ss_pred             CCCcceEEEEEEEC---CCCC----CCcceEEe-----cCCCeEEEEEEEEcCCCCCCC
Q psy15979         80 YTPLEEFKIKYRKI---PGNE----PSPMSNQL-----TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        80 ~~pi~~y~~~~r~~---~~~~----~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .++. .+.| ++..   ....    .....+.|     .+.+.|.|  .|.|.+|....
T Consensus       127 ~p~~-~v~W-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~s  181 (192)
T 2iep_A          127 NPKP-SVSW-IKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRC--VAKNSLGTAYS  181 (192)
T ss_dssp             ESCC-EEEE-EETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEE--EEEETTEEEEC
T ss_pred             cCCc-eEEE-EeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEE--EEEcCCCcEEE
Confidence            5433 3444 3321   1110    01122333     33788988  66899987643

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=98.80  E-value=5.4e-08  Score=81.77  Aligned_cols=116  Identities=15%  Similarity=0.206  Sum_probs=78.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCc-----eEEEEEEecCCCCce-eecCCCCCCCCeEEEEEEecC--CCCcceEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSGKPNPAI-FRSHPQGRLPNSYNITWMVSS--YTPLEEFKI   88 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~-----~~~~~~v~~~P~p~~-~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~   88 (152)
                      ...++|.++.+.-.-.+++.|.|..|.     ....+.+.-.|.+|. ...  .....+++.|+|..+.  +.+|..|.|
T Consensus       399 ~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~~~~--~~~s~tSV~LsW~pP~~~ng~I~~Y~V  476 (536)
T 3fl7_A          399 RTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRL--EGRSTTSLSVSWSIPPPQQSRVWKYEV  476 (536)
T ss_dssp             SSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCEEEE--EECCC-CCEEEEECCTTTTTTCSEEEE
T ss_pred             cceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCCCce--eeccCCeEEEEEECCcCCCCcccEEEE
Confidence            457889999999999999999999996     233455554443322 211  2345689999999753  457999999


Q ss_pred             EEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         89 KYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        89 ~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      .|+......      ....++.   |.+++.|.|+|.|.|..|.|.+|....+.+
T Consensus       477 ~y~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T  531 (536)
T 3fl7_A          477 TYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT  531 (536)
T ss_dssp             EEEEC--CCCCEEEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEEC
T ss_pred             EEEECCCCceEEEEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEe
Confidence            999875431      1113444   555999999999999999999988775544

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.80  E-value=9.2e-09  Score=77.49  Aligned_cols=122  Identities=13%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE-cCCCceEEE--EEEecC-CCCceeecCCCC---CCCCeEEEEE
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAY--LELSGK-PNPAIFRSHPQG---RLPNSYNITW   75 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~--~~v~~~-P~p~~~~~~~~~---~~~~~~~L~W   75 (152)
                      +..+.++.+...   ..|.|.+++.+|+|.|+|.|. |..|.....  +.|... +.||.+...+..   .....+.|.|
T Consensus       132 ~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C  208 (289)
T 3ejj_X          132 VLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVC  208 (289)
T ss_dssp             CCTTCCEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEE
T ss_pred             cCCCccEEECCC---CCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEE
Confidence            445667777533   469999999999999999999 555554444  444432 244444332211   2468899999


Q ss_pred             EecCCCCcceEEEEEEE--CCCCC-----CC----cceEEe-----cCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         76 MVSSYTPLEEFKIKYRK--IPGNE-----PS----PMSNQL-----TGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        76 ~~~~~~pi~~y~~~~r~--~~~~~-----~~----~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .+.+..|...+.|....  .....     ..    ...+.|     .+.+.|.|  .|.|.+|....+..
T Consensus       209 ~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~s~~  276 (289)
T 3ejj_X          209 SATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSC--VASNDVGTRTATMN  276 (289)
T ss_dssp             EEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEE--EEECSSCEEEEEEE
T ss_pred             EeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEE--EEEcCCCCccccEE
Confidence            98764444445543211  11100     00    122333     33788988  77999998765543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=7e-09  Score=68.11  Aligned_cols=56  Identities=27%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             cccCCCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCc
Q psy15979          2 RLETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPA   57 (152)
Q Consensus         2 ~l~~~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~   57 (152)
                      +|..+.++.+. .......|.|.+++.+|+|.|+|.|.|..|.....  +.|..+|.+|
T Consensus        49 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           49 PVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             BCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCCSS
T ss_pred             ECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCCCC
Confidence            34444554443 34445789999999999999999999999998875  4455666554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.80  E-value=1e-07  Score=70.62  Aligned_cols=85  Identities=12%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE----EEEEecCC------------CCceeecCCC---
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA----YLELSGKP------------NPAIFRSHPQ---   64 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~----~~~v~~~P------------~p~~~~~~~~---   64 (152)
                      .+|+.+..  .+...+|.|.+++.+|+|.|+|.|.|..+....    .+.|...|            .++.+...+.   
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (247)
T 2ghw_B           67 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLS  146 (247)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEE
T ss_pred             cCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEE
Confidence            46888865  345778999999999999999999998443222    34554432            1222222111   


Q ss_pred             CCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         65 GRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        65 ~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .....++.|.|.+.+..+. . ..||+.
T Consensus       147 v~~G~~v~L~C~~~~~~~~-~-v~W~k~  172 (247)
T 2ghw_B          147 LSPGERATLSCRASQSVRS-N-LAWYQQ  172 (247)
T ss_dssp             ECTTSCEEEEEEESSCCTT-C-EEEEEE
T ss_pred             ecCCCcEEEEEEeCCCccc-e-EEEEEE
Confidence            1246889999998766443 3 334553

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.80  E-value=2e-08  Score=66.48  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=58.0

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCC------CcceE---EecCCCeEEEEEEEEcCCC
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP------SPMSN---QLTGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~------~~~~~---~L~~~~~Y~~rV~A~N~~G  122 (152)
                      +.|.+|..... .....+++.|+|..+...++..|.++|+.......      ....+   .|.+++.|.|||.|.|..|
T Consensus        16 ~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   94 (115)
T 1x5z_A           16 GVPGQPLNFKA-EPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQG   94 (115)
T ss_dssp             CCCCCCEEEEE-ECSSSSEEEEEEECCSCCCCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECSSC
T ss_pred             CCCCCCccCEe-eeCCCCEEEEEEcCCCCCCccEEEEEEEeCCCCCceEEecCCCcEEEECCCCCCCeEEEEEEEECCCc
Confidence            35554443221 12346899999998765589999999998754431      12334   4666999999999999999


Q ss_pred             CCCCCCCccccc
Q psy15979        123 RGNSTNGGLIVP  134 (152)
Q Consensus       123 ~g~~s~~~~~~~  134 (152)
                      .|.++....+.+
T Consensus        95 ~g~~S~~~~~~T  106 (115)
T 1x5z_A           95 LGASTAEISART  106 (115)
T ss_dssp             EEEECCCEEEEC
T ss_pred             ccCCCcCEEEec
Confidence            999988765544

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.80  E-value=4.1e-08  Score=64.62  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=57.4

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-------cceEE---ecCCCeEEEEEEEEc
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-------PMSNQ---LTGTNQYQNRRLVRK  119 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-------~~~~~---L~~~~~Y~~rV~A~N  119 (152)
                      ..|.+|..... .....+++.|.|..+.  +.+|..|.++|+........       ...+.   |.+++.|.|||.|.|
T Consensus         9 ~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   87 (111)
T 1x5l_A            9 AAPSQVVVIRQ-ERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRART   87 (111)
T ss_dssp             CCCCCCCCEEC-SCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEE
T ss_pred             CCCCCCceEEE-EEcCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCceeEEEecCCCCEEEEcCCCCCCEEEEEEEEEe
Confidence            45555432221 1245689999999753  35789999999987532211       13343   556999999999999


Q ss_pred             CCCCCCCCCCcccccc
Q psy15979        120 RFDRGNSTNGGLIVPK  135 (152)
Q Consensus       120 ~~G~g~~s~~~~~~~~  135 (152)
                      ..|.|.++....+.+.
T Consensus        88 ~~G~g~~S~~~~~~T~  103 (111)
T 1x5l_A           88 SAGCGRFSQAMEVETG  103 (111)
T ss_dssp             TTEECCCCCCEEEECC
T ss_pred             CCcCCCCcccEEEEcC
Confidence            9999999887766544

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.80  E-value=2.7e-08  Score=72.76  Aligned_cols=106  Identities=12%  Similarity=0.115  Sum_probs=64.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecCC------------CCceeecCCC---CCCCCeEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKP------------NPAIFRSHPQ---GRLPNSYNITWMV   77 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~P------------~p~~~~~~~~---~~~~~~~~L~W~~   77 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|...   ..+.|...|            .++.+...+.   ......+.|.|.+
T Consensus        63 ~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~  142 (218)
T 3k0w_A           63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA  142 (218)
T ss_dssp             CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEE
T ss_pred             CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEe
Confidence            456899999999999999999999998543   345554432            1123322221   1235789999998


Q ss_pred             cCCCCcceEEEEEEECCC-CCCCcceEEe-----cCCCeEEEEEEEEcCCCCCC
Q psy15979         78 SSYTPLEEFKIKYRKIPG-NEPSPMSNQL-----TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        78 ~~~~pi~~y~~~~r~~~~-~~~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      .+.++. .+.|. +.... .......+.|     .+.+.|.|  .|.|.+|...
T Consensus       143 ~g~p~~-~v~W~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~  192 (218)
T 3k0w_A          143 VGSPIP-HYQWF-KNELPLTHETKKLYMVPYVDLEHQGTYWC--HVYNDRDSQD  192 (218)
T ss_dssp             EBSSCC-EEEEE-ETTEECTTCCSSEEEESSCCGGGCEEEEE--EEECSSCEEE
T ss_pred             cccCCC-eEEEE-ECCEECCCCCCCEEEEeecChhcCEEEEE--EEEcCCCCce
Confidence            665433 35543 32110 0111123333     34889988  6799888654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.79  E-value=2.8e-08  Score=75.20  Aligned_cols=118  Identities=7%  Similarity=0.035  Sum_probs=72.5

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCE-EEEEEEEcCCCceEE---EEEEecCC-CCceeecCCC---CCCCCeEEE
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRA---YLELSGKP-NPAIFRSHPQ---GRLPNSYNI   73 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~---~~~v~~~P-~p~~~~~~~~---~~~~~~~~L   73 (152)
                      +|..+.++.+...   ..|.|.+++.+|+| .|+|.|.|..|....   .+.|...+ .||.+...+.   ......+.|
T Consensus       132 ~l~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l  208 (290)
T 2o26_X          132 SLPTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTV  208 (290)
T ss_dssp             CCCTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEE
T ss_pred             CCCCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEE
Confidence            4555667776543   37999999999999 999999999766433   34444222 4444433221   224688999


Q ss_pred             EEEecCCCCcceEEEEEEECCC---CC--C-----------CcceEE-----ecCCCeEEEEEEEEcCCCCC
Q psy15979         74 TWMVSSYTPLEEFKIKYRKIPG---NE--P-----------SPMSNQ-----LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        74 ~W~~~~~~pi~~y~~~~r~~~~---~~--~-----------~~~~~~-----L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .|.+.+.++...+.|.......   ..  .           ....+.     ..+.+.|.|  .|.|.+|..
T Consensus       209 ~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~N~~g~~  278 (290)
T 2o26_X          209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMC--YANNTFGSA  278 (290)
T ss_dssp             EEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEE--EEECSSCEE
T ss_pred             EEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEE--EEeCCCCcE
Confidence            9999865433335554332220   00  0           011223     334789988  679999976

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.79  E-value=2.9e-08  Score=74.78  Aligned_cols=77  Identities=10%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCc---eE--EEEEEecCCCCceeecCC--CCCCCCeEEEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK---HR--AYLELSGKPNPAIFRSHP--QGRLPNSYNITWM   76 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~---~~--~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~   76 (152)
                      ++|+.+..+  +...+|.|.+++.+|+|.|+|.|.|..|.   ..  ..+.|.+.+.|.......  ......++.|.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~  144 (256)
T 1nqb_A           65 KSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCR  144 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEE
T ss_pred             CCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeE
Confidence            468888653  45789999999999999999999999873   11  123333333222111110  0124688999999


Q ss_pred             ecCCCC
Q psy15979         77 VSSYTP   82 (152)
Q Consensus        77 ~~~~~p   82 (152)
                      +.+..+
T Consensus       145 ~~~~~~  150 (256)
T 1nqb_A          145 SSQSIV  150 (256)
T ss_dssp             ESSCCB
T ss_pred             ecCccc
Confidence            876543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=6.1e-09  Score=68.62  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN   55 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~   55 (152)
                      +|..++|+.+..++..++|.|.+++.+|+|.|+|.|.|..  ..+.+.|..+|.
T Consensus        49 ~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~--~~a~L~V~~~p~  100 (104)
T 2eny_A           49 TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLT--SKASLIVRERSG  100 (104)
T ss_dssp             BCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTEE--EEECEEEECCCS
T ss_pred             ECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCee--EEEEEEEeCCCc
Confidence            5677889999888888999999999999999999997642  333455555553

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.79  E-value=1.9e-08  Score=66.34  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=50.7

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCCCC-----CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEP-----SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~-----~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|.|..+.  +.+|..|.|+|+.......     ....+   .|.+++.|.|||.|.|..|.|.++....+..
T Consensus        20 s~~sv~l~W~~p~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~g~~S~~v~~~T   97 (106)
T 1x4x_A           20 SATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT   97 (106)
T ss_dssp             ETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCCEEEEESCSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCEEEEC
T ss_pred             CCCEEEEEEcCCCCCCCcceEEEEEEEcCCCceEEEEeCCcceEEEcCCCCCCEEEEEEEEEcCCcCCCCcCCEEEEC
Confidence            4689999999753  3589999999987642210     11233   4666999999999999999999887665544

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.79  E-value=1.1e-07  Score=72.05  Aligned_cols=86  Identities=14%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec--------------CCCCceeec-CCCCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--------------KPNPAIFRS-HPQGR   66 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~--------------~P~p~~~~~-~~~~~   66 (152)
                      +|..+.|+.+...+....|.|.+++.+|+|.|+|.|.|..|... ...|..              .|....... .....
T Consensus        42 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~  120 (312)
T 2y23_A           42 STEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL  120 (312)
T ss_dssp             ECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEEC
T ss_pred             ECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEe
Confidence            46667899998888889999999999999999999999999766 334432              332211110 11112


Q ss_pred             CCCeEEEEEEecCCCCcceEEE
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      ....+.|.|.+....|...+.|
T Consensus       121 ~G~~v~l~C~~~~~~p~~~v~W  142 (312)
T 2y23_A          121 EKGQVRFWMQAEKLSGNAKVNY  142 (312)
T ss_dssp             SSSCEEEEEEESCCCSSCEEEE
T ss_pred             eCCCEEEEEEEEeCCCCCEEEE
Confidence            3578999999884334444554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.79  E-value=9.3e-08  Score=70.79  Aligned_cols=106  Identities=11%  Similarity=0.019  Sum_probs=65.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE--EecCCCCceeecCCC--CCCCCeEEEEEEecCCC--CcceEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE--LSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYT--PLEEFKIKY   90 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~--v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~--pi~~y~~~~   90 (152)
                      ...|.|.+++.+|+|.|+|.|.|..|.....+.  |...+.++.+...+.  ......+.|.|.+.+.+  |...+.+.+
T Consensus       130 ~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w  209 (262)
T 3rjd_A          130 NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSF  209 (262)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEE
T ss_pred             CCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEE
Confidence            467999999999999999999999987777544  444444455443321  12468899999998764  333333322


Q ss_pred             EECCCCC---CCcceEE-----ecCCCeEEEEEEEEcCCCCC
Q psy15979         91 RKIPGNE---PSPMSNQ-----LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        91 r~~~~~~---~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .+.+..-   .....+.     .++.+.|.|  .|.|..|..
T Consensus       210 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~G~~  249 (262)
T 3rjd_A          210 YMGSKTLRGRNTSSEYQILTARREDSGLYWC--EAATEDGNV  249 (262)
T ss_dssp             EETTEEEEEEESCCEEEESSCCGGGCEEEEE--EEEETTSSC
T ss_pred             EeCCcEecccCCCceEEEEEechhhCeEEEE--EEEcccCce
Confidence            2221110   0112233     334889998  679999964

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.78  E-value=9.3e-09  Score=66.15  Aligned_cols=45  Identities=29%  Similarity=0.384  Sum_probs=38.0

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .++.+...+...+|.|.+++.+|+|.|+|.|.|..|.+...+.|.
T Consensus        51 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~   95 (99)
T 1u2h_A           51 RRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE   95 (99)
T ss_dssp             TEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEE
Confidence            456666666677899999999999999999999999998876654

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.78  E-value=2.1e-08  Score=65.58  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=54.4

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEc
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRK  119 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N  119 (152)
                      +.|.+|.+...  ....+++.|+|..+.  ..+|..|.|+|+......+.       ...+   .|.+++.|.|||.|.|
T Consensus         6 ~~P~~p~~~v~--~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   83 (107)
T 2dn7_A            6 SGPGRPTMMIS--TTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKN   83 (107)
T ss_dssp             CCCCCCEEEEE--ECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEE
T ss_pred             CCCCCCcEeEE--ecCCCEEEEEECCCCCCCCceeEEEEEEEECCCCCCEEEEeCCCccEEEeCCCCCCCEEEEEEEEEc
Confidence            45654443221  125689999999863  45799999999987644321       1234   4666999999999999


Q ss_pred             CCCCCCCCCCc
Q psy15979        120 RFDRGNSTNGG  130 (152)
Q Consensus       120 ~~G~g~~s~~~  130 (152)
                      ..|.|.++...
T Consensus        84 ~~G~g~~s~~~   94 (107)
T 2dn7_A           84 RAGLGEEFEKE   94 (107)
T ss_dssp             TTEEEEEEEEE
T ss_pred             CCcccCCeeeE
Confidence            99999988743

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.78  E-value=1.6e-08  Score=67.77  Aligned_cols=51  Identities=31%  Similarity=0.444  Sum_probs=40.6

Q ss_pred             CCcEEEEEcC-CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCC
Q psy15979          6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP   56 (152)
Q Consensus         6 ~~r~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p   56 (152)
                      ++|+.+...+ ...+|.|.+++.+|+|.|+|+|.|..|.....+.|.  .+|.+
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           60 TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             BTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCC
T ss_pred             CCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCC
Confidence            5788887654 345899999999999999999999999998875554  44443

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.78  E-value=2.7e-08  Score=75.88  Aligned_cols=107  Identities=18%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecCCCCceeecCCC---CCCCCeEEEEEEecCCCCcceEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIKY   90 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi~~y~~~~   90 (152)
                      .+.|.|.+++.+|+|.|+|+|.|..|...   ..+.|...+.||.+...+.   ......+.|.|.+.+.++. .+.| +
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W-~  240 (304)
T 2yd9_A          163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP-YVKW-M  240 (304)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC-EEEE-E
T ss_pred             CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC-EEEE-E
Confidence            34899999999999999999999999876   4566655555555543322   2246789999998765433 3444 3


Q ss_pred             EEC---CCCC-C--CcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         91 RKI---PGNE-P--SPMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        91 r~~---~~~~-~--~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      +..   .... .  ....+   .+++.+.|.|  .|.|.+|....+
T Consensus       241 ~~~~~l~~~~~~~~~~~~L~i~~~~d~G~Y~C--~a~N~~G~~~~~  284 (304)
T 2yd9_A          241 QGAEDLTPEDDMPVGRNVLELTDVKDSANYTC--VAMSSLGVIEAV  284 (304)
T ss_dssp             ETTEECSCSSSCCBSEEEEEECSCCSCEEEEE--EEEETTEEEEEE
T ss_pred             ECCEECCCcccccCCcEEEEEcccccCEEEEE--EEEeCCCcEEEE
Confidence            321   1110 0  11122   3445889988  779999987443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.78  E-value=1.7e-07  Score=66.58  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceEEEEEEEC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~   93 (152)
                      ....|.|.+++.+|+|.|+|.|.|. |.....+.|.....|.......  .......+.|.|.+.+.++. .+.|.....
T Consensus        54 ~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~  131 (190)
T 2wv3_A           54 SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP-EWMWRKKEN  131 (190)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC-EEEEEEEET
T ss_pred             ccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC-ceEEEEcCC
Confidence            4578999999999999999999999 8877765555332222211110  11235789999998776443 455443212


Q ss_pred             CC------CCCC--------cceE-----Ee-cCCCeEEEEEEEEcCCCCCC
Q psy15979         94 PG------NEPS--------PMSN-----QL-TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        94 ~~------~~~~--------~~~~-----~L-~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      +.      ....        ...+     .+ .+.+.|.|  .|.|.+|...
T Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C--~a~N~~g~~~  181 (190)
T 2wv3_A          132 GVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC--NATNSIGSAS  181 (190)
T ss_dssp             TEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEE--EEECSSCEEE
T ss_pred             CceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEE--EEEecCCcce
Confidence            10      0000        0112     22 45788988  6799999754

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.78  E-value=5.8e-08  Score=72.27  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeec-CCC--CCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~-~~~--~~~~~~~~L~W~~~~   79 (152)
                      .+|+.+...+...+|.|.+++.+|+|.|+|.|.|..+....   .+.|...+.+|.+.. .+.  ......+.|.|.+.+
T Consensus       101 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g  180 (254)
T 2c1o_A          101 PDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  180 (254)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             cceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEec
Confidence            37888877777889999999999999999999998764322   455554444444332 111  112458999999876


Q ss_pred             C
Q psy15979         80 Y   80 (152)
Q Consensus        80 ~   80 (152)
                      .
T Consensus       181 ~  181 (254)
T 2c1o_A          181 F  181 (254)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=98.78  E-value=2.7e-07  Score=67.29  Aligned_cols=118  Identities=14%  Similarity=0.184  Sum_probs=75.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEe----cCCCCceeecCCCCC-----CCCeEEEEEEecCC--CCcc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS----GKPNPAIFRSHPQGR-----LPNSYNITWMVSSY--TPLE   84 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~----~~P~p~~~~~~~~~~-----~~~~~~L~W~~~~~--~pi~   84 (152)
                      .+.+.+.++.....-.+.+.|.|.+|...+ .+.+.    .+|.||.........     ...++.|+|..+..  ..+.
T Consensus        67 ~~~~~~~~L~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~~~~~~l  146 (215)
T 1cd9_B           67 NCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQ  146 (215)
T ss_dssp             EEEEEGGGCCTTSCEEEEEEEEETTEEEECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGGGTTSCE
T ss_pred             EEEECCcccccceEEEEEEEEECCCCCccCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCCCCeEEE
Confidence            345556666666666677899999998654 23332    367777654322110     46789999997632  2347


Q ss_pred             eEEEEEE-ECCCCCCC--------cceEE---ecCCCeEEEEEEEEcCCCC---CCCCCCccccc
Q psy15979         85 EFKIKYR-KIPGNEPS--------PMSNQ---LTGTNQYQNRRLVRKRFDR---GNSTNGGLIVP  134 (152)
Q Consensus        85 ~y~~~~r-~~~~~~~~--------~~~~~---L~~~~~Y~~rV~A~N~~G~---g~~s~~~~~~~  134 (152)
                      .|.|+|+ ......+.        ...+.   |.+++.|+|||+|+|..|.   |+.|....+.+
T Consensus       147 ~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T  211 (215)
T 1cd9_B          147 ECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP  211 (215)
T ss_dssp             EEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECC
T ss_pred             EEEEEEccCCCCCCcEEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceec
Confidence            9999999 55443322        12333   5569999999999999775   45666555433

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.78  E-value=7.3e-09  Score=66.27  Aligned_cols=42  Identities=21%  Similarity=0.474  Sum_probs=35.7

Q ss_pred             EEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        10 ~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+......+.|.|.+++.+|+|.|+|.|+|.+|.++..+.|.
T Consensus        50 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   91 (93)
T 1wit_A           50 LVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI   91 (93)
T ss_dssp             EEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEE
Confidence            333445678999999999999999999999999998887764

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.77  E-value=9.8e-08  Score=71.89  Aligned_cols=114  Identities=10%  Similarity=0.019  Sum_probs=69.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCc----eEEEEEEecCCCCceeecCCC--CCCCCeEEEEEEecCCCCcceEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGK----HRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEFKIK   89 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~----~~~~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~pi~~y~~~   89 (152)
                      ....|.|.+++.+|+|.|+|.+.|..|.    +...+.|.+.+.+|.+...+.  ....+.++|.|...+..+  .|.| 
T Consensus        58 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~--~~~w-  134 (242)
T 1p6f_A           58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS--MFLL-  134 (242)
T ss_dssp             CEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCS--EEEE-
T ss_pred             ceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCC--EEEE-
Confidence            5678999999999999999999997653    234566665443444332221  124689999999865433  4544 


Q ss_pred             EEECCCCC------CCcceEE-----ecCCCeEEEEEEEEcC-CCCCCCCCCccccc
Q psy15979         90 YRKIPGNE------PSPMSNQ-----LTGTNQYQNRRLVRKR-FDRGNSTNGGLIVP  134 (152)
Q Consensus        90 ~r~~~~~~------~~~~~~~-----L~~~~~Y~~rV~A~N~-~G~g~~s~~~~~~~  134 (152)
                      |+.-....      .....+.     ..+.+.|.|.  |.|. ++++.+++...+++
T Consensus       135 ~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~--a~n~~~~~s~~S~~~~l~V  189 (242)
T 1p6f_A          135 LKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCF--GSYNNHAWSFPSEPVKLLV  189 (242)
T ss_dssp             EECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEE--EEEETTEECCCCCCEEEEE
T ss_pred             EECCCccCccccCCCceEEEEeCCCccccCEEEEEE--EECCCCcccCCCCCEEEEE
Confidence            44321110      1112233     3348999995  5554 56777777664433

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.77  E-value=2e-08  Score=72.23  Aligned_cols=107  Identities=12%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLE   84 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~   84 (152)
                      +|+.+.  ..+++|.|.+++.+|+|.|+|.+.|.. .....  +.|..++..|.+..     ....+.|.|.+..+ |..
T Consensus        60 ~R~~l~--~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~-----~~~~v~L~C~~~~g-p~p  130 (180)
T 2dru_A           60 DRVDLD--KTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSKPMIYW-----ECSNATLTCEVLEG-TDV  130 (180)
T ss_dssp             TTEEEC--TTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCCCEEEE-----EGGGTEEEEECSSC-TTC
T ss_pred             CeEEEe--CCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCCCEEEe-----cCCCEEEEEEeCCC-CCC
Confidence            677772  245679999999999999999998876 44443  44445444344332     12458999998443 444


Q ss_pred             eEEEEEEECCC-CCCCcceEEe---cCCCeEEEEEEEEcCCCCCC
Q psy15979         85 EFKIKYRKIPG-NEPSPMSNQL---TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        85 ~y~~~~r~~~~-~~~~~~~~~L---~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      .+.|. +.... .......+.+   .+.+.|+|  .|.|.+|...
T Consensus       131 ~i~W~-~~~~~l~~~~~~~l~~~~~~d~g~Y~C--~a~N~~~~~~  172 (180)
T 2dru_A          131 ELKLY-QGKEHLRSLRQKTMSYQWTNLRAPFKC--KAVNRVSQES  172 (180)
T ss_dssp             EEEEE-ETTEEEEEESSSEEEEECSCCSSCEEE--EEEETTEEEE
T ss_pred             EEEEE-ECCeECcCCCCCEEEEEEhhcCccEEE--EEecCcCccc
Confidence            55553 32100 0011122333   45899999  7799998654

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=98.77  E-value=4.2e-08  Score=64.51  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=58.6

Q ss_pred             cCCCCceeec-CCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-----cceEE---ecCCCeEEEEEEEEcC
Q psy15979         52 GKPNPAIFRS-HPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-----PMSNQ---LTGTNQYQNRRLVRKR  120 (152)
Q Consensus        52 ~~P~p~~~~~-~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-----~~~~~---L~~~~~Y~~rV~A~N~  120 (152)
                      +.|.||.... .......+++.|+|..+.  ..+|..|.|+|+......+.     ...+.   |.+++.|.|||.|.|.
T Consensus         6 ~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~   85 (108)
T 2dm4_A            6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNFTEIKNLLVNTLYTVRVAAVTS   85 (108)
T ss_dssp             CCTTSCEEEEEECCTTCSSCEEEEEECCSCCSSCEEEEEEEEEETTCSCCEEEEESSSEEEECSCCSSCEEEEEEEEEES
T ss_pred             CCCcCCcCeEEEEeccCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCCeEEecCCccEEEeCCCCCCCEEEEEEEEECC
Confidence            4566665442 111235689999999853  45789999999987654321     23444   5559999999999999


Q ss_pred             CCCCCCCCCccccc
Q psy15979        121 FDRGNSTNGGLIVP  134 (152)
Q Consensus       121 ~G~g~~s~~~~~~~  134 (152)
                      .|.|.++....+.+
T Consensus        86 ~G~g~~S~~~~~~T   99 (108)
T 2dm4_A           86 RGIGNWSDSKSITT   99 (108)
T ss_dssp             SCEEEECCCEEEEC
T ss_pred             CceeCCCCCEEEEC
Confidence            99999988765544

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.77  E-value=2e-08  Score=76.59  Aligned_cols=120  Identities=13%  Similarity=0.206  Sum_probs=68.7

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcC-CCceEEEEEEe--cCCCCceeecCC--CCCCCCeEEEEEEecCC
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNP-MGKHRAYLELS--GKPNPAIFRSHP--QGRLPNSYNITWMVSSY   80 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~~~~~v~--~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~   80 (152)
                      +|+.+.. .....+|.|.+++.+|+|.|+|.|.|. .|..+..+.+.  ..|.++......  .......+.|.|...++
T Consensus        62 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g  141 (308)
T 4fom_A           62 GRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATG  141 (308)
T ss_dssp             TTEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEE
T ss_pred             ceEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCC
Confidence            4444432 224567999999999999999999996 66666654444  444333332221  12235678888876443


Q ss_pred             CCcceEEEEEEECCCCC------C-Cc----ceEEe-----cCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         81 TPLEEFKIKYRKIPGNE------P-SP----MSNQL-----TGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        81 ~pi~~y~~~~r~~~~~~------~-~~----~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .|...+.|. +....-.      . ..    ..+.|     .+++.|.|  .|.|..|.+..+..
T Consensus       142 ~P~~~i~W~-~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C--~a~n~~~~~~~~~~  203 (308)
T 4fom_A          142 KPVAHIDWE-GDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITC--VVKHPALEKDIRYS  203 (308)
T ss_dssp             BSCCEEEEC-CCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEE--EEECTTCSSCEEEE
T ss_pred             cCCceEEEE-ECCcccccccceeeeecccccccceEEeeeecCCccEEE--EEEccCCCCceEEe
Confidence            444445543 2211100      0 00    12233     34889998  56898887765443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.76  E-value=9e-09  Score=72.87  Aligned_cols=103  Identities=11%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-CCCCCeEEEEEEecCCCCcceEEEEEEECC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKIKYRKIP   94 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~   94 (152)
                      ....|.|.+++.+|+|.|+|.|.|..++....+.|..  .+........ ......+.|.|.+.+..|...+.|. +...
T Consensus        52 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~V~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~-k~g~  128 (175)
T 1fnl_A           52 QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHI--GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL-QNGK  128 (175)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEEEEC--SSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEE-ETTE
T ss_pred             CceEEEEeCCCcccCEEEEEEeeCCcccccEEEEEeC--CCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEE-ECCe
Confidence            4578999999999999999999998887777777663  2222222111 1246789999998876555455543 3210


Q ss_pred             CCC--CCcceEE-----ecCCCeEEEEEEEEcCCCC
Q psy15979         95 GNE--PSPMSNQ-----LTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        95 ~~~--~~~~~~~-----L~~~~~Y~~rV~A~N~~G~  123 (152)
                      .-.  .....+.     .++.+.|.|  .|.|..|.
T Consensus       129 ~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~~~  162 (175)
T 1fnl_A          129 DRKYFHHNSDFHIPKATLKDSGSYFC--RGLVGSKN  162 (175)
T ss_dssp             EEEEEEECCCEEESSCCGGGCEEEEE--EEEETTEE
T ss_pred             EccCCCCCCEEEEcccChhhCeEEEE--EEEcCCCC
Confidence            000  0112233     344889998  66887664

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.76  E-value=1.6e-08  Score=79.47  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=67.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC---CCCCCeEEEEEEecCCCCcceEEEEEEEC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi~~y~~~~r~~   93 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.....| .+...+.   ......+.|.|.+.+.++. .+.|. +..
T Consensus       274 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p-~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~-~~g  350 (404)
T 3p3y_A          274 NKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP-YWLDEPKNLILAPGEDGRLVCRANGNPKP-TVQWM-VNG  350 (404)
T ss_dssp             GTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEE-EEEECCCCEEECTTCCEEEECEEEEESCC-EEEEE-ETT
T ss_pred             CceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCC-eeeccCCcceeecCCcEEEEEEccccCCC-ceEEE-ECC
Confidence            4689999999999999999999999998887666543322 2221111   1235789999998776443 35543 321


Q ss_pred             ---CCCC--C----CcceEE-----ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         94 ---PGNE--P----SPMSNQ-----LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        94 ---~~~~--~----~~~~~~-----L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                         ....  .    ....+.     ..+.+.|.|  .|.|.+|....+
T Consensus       351 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~  396 (404)
T 3p3y_A          351 EPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQC--NTSNEHGYLLAN  396 (404)
T ss_dssp             EEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEE--EEEETTEEEEEE
T ss_pred             EecCCCCCCceEEecCCEEEEeecCHHHCEEEEE--EEEeCCCcEEEE
Confidence               1010  0    012233     334889988  779999976543

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=98.76  E-value=5.4e-09  Score=71.41  Aligned_cols=70  Identities=11%  Similarity=0.035  Sum_probs=49.2

Q ss_pred             CCCCCeEEEEEEecCC------CC-cceEEEEEEECCCCCCC------cceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         65 GRLPNSYNITWMVSSY------TP-LEEFKIKYRKIPGNEPS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        65 ~~~~~~~~L~W~~~~~------~p-i~~y~~~~r~~~~~~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ....+++.|.|..+..      .+ |..|.|+.+......+.      ...+   .|.+++.|.|||.|.|..|.|+++.
T Consensus        26 ~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~~~~t~~~v~gL~p~t~Y~frV~A~n~~G~s~~S~  105 (120)
T 1wfu_A           26 KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSP  105 (120)
T ss_dssp             CEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEEECSSSCEEECC
T ss_pred             eEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEecCCccEEEECCCCCCCEEEEEEEEECCCCCCCCCc
Confidence            3457999999997532      34 88999994322222211      1223   4667999999999999999999988


Q ss_pred             Cccccc
Q psy15979        129 GGLIVP  134 (152)
Q Consensus       129 ~~~~~~  134 (152)
                      ...+.+
T Consensus       106 ~~~~~T  111 (120)
T 1wfu_A          106 VVSVAT  111 (120)
T ss_dssp             CEEEEC
T ss_pred             cEeeEc
Confidence            765543

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=1.9e-08  Score=65.32  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=40.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P   54 (152)
                      +|..+.|+.+.    ...|.|.+++.+|+|.|+|+|.|..|.....+.|....
T Consensus        42 ~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   90 (99)
T 2cr3_A           42 QLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD   90 (99)
T ss_dssp             BCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCS
T ss_pred             ECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEec
Confidence            45556677764    35899999999999999999999999998887776543

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=98.76  E-value=1e-07  Score=63.41  Aligned_cols=70  Identities=17%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             CCCCeEEEEEEec----CCCCcceEEEEEEECCCCC---C-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNE---P-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~---~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|..+    .+.+|..|.|+|+......   .       ....+.   |.+++.|.|+|.|.|..|.|.++.
T Consensus        20 ~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~   99 (114)
T 1x4y_A           20 VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSN   99 (114)
T ss_dssp             SSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCCCCCC
T ss_pred             cCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEEEEEEEEcCCccCCCcC
Confidence            3568999999976    3458999999998765431   1       112343   556999999999999999999998


Q ss_pred             Ccccccc
Q psy15979        129 GGLIVPK  135 (152)
Q Consensus       129 ~~~~~~~  135 (152)
                      ...+.+.
T Consensus       100 ~v~~~T~  106 (114)
T 1x4y_A          100 VMICETK  106 (114)
T ss_dssp             CEEEECC
T ss_pred             CEEEEeC
Confidence            7766554

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=98.76  E-value=8.2e-08  Score=75.01  Aligned_cols=97  Identities=11%  Similarity=0.110  Sum_probs=65.2

Q ss_pred             EEEEEEEcCCCceEEEEEEe----cCCCCceeecCCCCCCCCeEEEEEEecC--CCCc----ceEEEEEEECCCCCCC--
Q psy15979         32 NYSCEATNPMGKHRAYLELS----GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPL----EEFKIKYRKIPGNEPS--   99 (152)
Q Consensus        32 ~YtC~A~N~~G~~~~~~~v~----~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi----~~y~~~~r~~~~~~~~--   99 (152)
                      .++|.|.|.+|.......+.    ++|.||.............+.|+|..+.  ..|.    +.|.|+||..+...+.  
T Consensus       187 ~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~  266 (306)
T 3d85_D          187 EVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDR  266 (306)
T ss_dssp             EEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CE
T ss_pred             EEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCccEEE
Confidence            35899999999876665443    6898886442211112378999999853  2333    6899999986543211  


Q ss_pred             ----cceEEecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979        100 ----PMSNQLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus       100 ----~~~~~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                          ..++.|..++.|+|||+|+|..|.|..|+
T Consensus       267 ~~~~~ts~~l~~~~~Y~vqVRa~~~~~~G~WSe  299 (306)
T 3d85_D          267 VFTDKTSATVICRKNASISVRAQDRYYSSSWSE  299 (306)
T ss_dssp             EEESSSEEEECCCSSCEEEEEEEESSSCCCCCC
T ss_pred             eeccccEEEEeCCCeEEEEEEeccCCCCCCCCC
Confidence                24678888999999999999999887764

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.75  E-value=2e-08  Score=72.15  Aligned_cols=111  Identities=14%  Similarity=0.052  Sum_probs=59.9

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEE-EEecCCCCcee--ecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL-ELSGKPNPAIF--RSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~-~v~~~P~p~~~--~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ...+|.|.+++.+|+|.|+|.|.|..|...... .+...+.|...  .............+.+...+..|...+.| ++.
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w-~~~  159 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITW-ISS  159 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEE-ECS
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEE-EEC
Confidence            456799999999999999999999888666532 22222222221  11111223455556665543333333333 222


Q ss_pred             CCCC---------CCCc----ceEEecC-----CCeEEEEEEEEcCCCCCCCCCC
Q psy15979         93 IPGN---------EPSP----MSNQLTG-----TNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        93 ~~~~---------~~~~----~~~~L~~-----~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ....         ..+.    ..+.|.+     ++.|.|  .|.|..|...-+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC--~a~N~~~~~~~~~~  212 (225)
T 4fmk_A          160 LGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTC--RVEHESFEEPILLP  212 (225)
T ss_dssp             SCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEE--EEECTTCSSCEEEE
T ss_pred             CccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEE--EEEcCCCCeEEEEE
Confidence            1110         0111    1234433     789999  66898887654433

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.75  E-value=4.9e-08  Score=80.03  Aligned_cols=107  Identities=18%  Similarity=0.095  Sum_probs=66.7

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec--CCCCceeecC---CCCCCCCeEEEEEEecCCCCcceEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSH---PQGRLPNSYNITWMVSSYTPLEEFKIKY   90 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~--~P~p~~~~~~---~~~~~~~~~~L~W~~~~~~pi~~y~~~~   90 (152)
                      ..+.|.|.+++.+|+|.|+|+|.|..|.....+.|..  +|........   ........+.|.|.+.+.++...+.|. 
T Consensus       271 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~-  349 (524)
T 2ec8_A          271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI-  349 (524)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEE-
T ss_pred             eEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEE-
Confidence            4678999999999999999999999999888766554  3322111110   011235789999998776543324443 


Q ss_pred             EECCC-CCC--------------CcceEEecC-----CCeEEEEEEEEcCCCCCC
Q psy15979         91 RKIPG-NEP--------------SPMSNQLTG-----TNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        91 r~~~~-~~~--------------~~~~~~L~~-----~~~Y~~rV~A~N~~G~g~  125 (152)
                      +.... ...              ....+.|..     .+.|.|  .|.|.+|...
T Consensus       350 k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~g~~~  402 (524)
T 2ec8_A          350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF--LVSNSDVNAA  402 (524)
T ss_dssp             SSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEE--EEECSSCEEE
T ss_pred             ECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEE--EEEecCceEE
Confidence            22110 000              012333433     788988  6799999753

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.75  E-value=2.8e-08  Score=80.53  Aligned_cols=106  Identities=11%  Similarity=0.049  Sum_probs=60.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC-CCCCCCeEEEEEEecCCCCcceEEEEEEECCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~   95 (152)
                      ..+|.|.+|+.+|+|.|+|.|.|..|.....+.|...+.|......+ .......+.|.|.+.+.++ ..+.|. +....
T Consensus       102 ~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~-P~i~W~-k~~~~  179 (423)
T 3qs7_E          102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPE-PIVEWV-LCDSQ  179 (423)
T ss_dssp             EEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSC-CEEEEE-EC---
T ss_pred             EEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeecC-CeEEEE-ECCCC
Confidence            34699999999999999999999999988877776553332111111 0112355678999877643 334443 32111


Q ss_pred             CC------CC-----cceEEecCCCeEEEEEEEEcCCCCCCC
Q psy15979         96 NE------PS-----PMSNQLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        96 ~~------~~-----~~~~~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ..      ..     .......+.+.|+|  .|.|.+|....
T Consensus       180 ~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C--~A~N~~G~~~~  219 (423)
T 3qs7_E          180 GESCKEESPAVVKKEEKVLHELFGTDIRC--CARNELGRECT  219 (423)
T ss_dssp             ----------CEEECCSEECCCCSSCEEE--EEECSSCEEEE
T ss_pred             CccccccccccccccceEEecccCeEEEE--EEEcCCCCcce
Confidence            00      00     01112334788998  78999997543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.75  E-value=1.2e-08  Score=76.92  Aligned_cols=118  Identities=14%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecC-CCCceeecCCC---CCCCCeEEEEE
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGK-PNPAIFRSHPQ---GRLPNSYNITW   75 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~-P~p~~~~~~~~---~~~~~~~~L~W   75 (152)
                      +..+.++.+...   ..|.|.+++.+|+|.|+|.|.|..|....   .+.|... +.||.+...+.   ......+.|.|
T Consensus       132 ~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C  208 (292)
T 4dkd_C          132 LMRHTNYSFSPW---HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVC  208 (292)
T ss_dssp             CCSSCCEECCSS---SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEE
T ss_pred             cccCCcccccCC---ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEE
Confidence            344556665433   34999999999999999999999886644   3444432 23444433321   12468899999


Q ss_pred             EecCCCCcceEEEEEEECCCCCC--C------c-----ceEEec-----CCCeEEEEEEEEcCCCCCCCC
Q psy15979         76 MVSSYTPLEEFKIKYRKIPGNEP--S------P-----MSNQLT-----GTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        76 ~~~~~~pi~~y~~~~r~~~~~~~--~------~-----~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+.+.++.  +.+++...+....  .      .     ..+.|.     +.+.|.|  .|.|.+|....+
T Consensus       209 ~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~g~~~~~  274 (292)
T 4dkd_C          209 SASSVDVN--FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSC--VASNVQGKHSTS  274 (292)
T ss_dssp             EEEESSSC--CEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEE--EEECSSCEEEEE
T ss_pred             EecCCCCc--eEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEE--EEecCCCCceeE
Confidence            98765442  2333333222111  0      0     123333     3789988  679999985433

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.74  E-value=1e-08  Score=66.94  Aligned_cols=48  Identities=23%  Similarity=0.336  Sum_probs=34.2

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      |..+.++.+.  ...+.|.|.+++.+|+|.|+|.|.|..|.+...+.|..
T Consensus        51 ~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   98 (108)
T 3kvq_A           51 LVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII   98 (108)
T ss_dssp             CCCBTTEEEE--TTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEE
T ss_pred             cccCCCeEEe--CCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEE
Confidence            4445666664  33468999999999999999999999999988766553

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=1.1e-07  Score=62.79  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=51.1

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCCC---C-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCcc
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE---P-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGL  131 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~---~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~  131 (152)
                      ..+++.|+|..+.  +.+|..|.|+|+......   +       ....+.   |.+++.|.|||.|.|..|.|.++....
T Consensus        23 ~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~  102 (114)
T 2ede_A           23 KPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPIL  102 (114)
T ss_dssp             CSSCEEEEEECCSSCSSCCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSSCEEEEEEEEECSSCBCCCCCCEE
T ss_pred             CCCEEEEEECCCCCCCCceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCCCEEEEEEEEEeCCcCcCCcccEE
Confidence            4689999999753  347899999998754321   1       113343   566999999999999999999998776


Q ss_pred             ccc
Q psy15979        132 IVP  134 (152)
Q Consensus       132 ~~~  134 (152)
                      +..
T Consensus       103 ~~T  105 (114)
T 2ede_A          103 FRT  105 (114)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            644

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.74  E-value=1.3e-08  Score=79.85  Aligned_cols=107  Identities=16%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEecCCCCceeecCCC----CCCCCeEEEEEEecCCCCcceEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQ----GRLPNSYNITWMVSSYTPLEEFKIKY   90 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~~P~p~~~~~~~~----~~~~~~~~L~W~~~~~~pi~~y~~~~   90 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|.... .+.|.... +|.+...+.    ......+.|.|.+.+.++. .+.|..
T Consensus       268 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~-~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~  345 (395)
T 1bih_A          268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSH  345 (395)
T ss_dssp             TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE-EEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEE
T ss_pred             CCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc-CCccccCCCcceEecCCCeEEEEEEECcccCC-eeEEEE
Confidence            3458999999999999999999999999765 54444321 122222111    1235789999998765433 344432


Q ss_pred             E--ECCCCC--CCcceEEe-----cCCCeEEEEEEEEcCCCCCCC
Q psy15979         91 R--KIPGNE--PSPMSNQL-----TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        91 r--~~~~~~--~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .  ......  .....+.|     .+.+.|.|  .|.|.+|....
T Consensus       346 ~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~G~~~~  388 (395)
T 1bih_A          346 NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGC--RATNEHGDKYF  388 (395)
T ss_dssp             TTEECCSSSEEEETTEEEESSCCSTTCEEEEE--EEEETTEEEEE
T ss_pred             CCEECCCCceEEECCEEEEeeCCcccCEEEEE--EEEccCCCceE
Confidence            1  111110  00113333     33788988  77999997643

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.74  E-value=2.1e-08  Score=86.35  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=76.7

Q ss_pred             ccCCCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCC---CCCCeEEEEEEec
Q psy15979          3 LETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVS   78 (152)
Q Consensus         3 l~~~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~---~~~~~~~L~W~~~   78 (152)
                      |..+.++.+. ..+..+.|.|.+++.+|+|.|+|.|.|..|.....+.|...- ||.+...+..   .....+.|.|.+.
T Consensus       661 l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~-~P~~~~~~~~~~v~~G~~v~l~C~~~  739 (816)
T 3dmk_A          661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV-PPRWILEPTDKAFAQGSDAKVECKAD  739 (816)
T ss_dssp             CCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEE-EEEEEECCCCEEEETTCCEEEECEEE
T ss_pred             cCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEe-CCceeeecccceecCCCcEEEEEEEe
Confidence            3334444443 244678899999999999999999999999998876665432 2233222211   2357889999987


Q ss_pred             CCCCcceEEEEEEECCCC----C---CC------cceEEec-----CCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         79 SYTPLEEFKIKYRKIPGN----E---PS------PMSNQLT-----GTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        79 ~~~pi~~y~~~~r~~~~~----~---~~------~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      +.++. .+.|. +.....    .   ..      ..++.|.     +.+.|.|  .|.|.+|.+..+...
T Consensus       740 g~P~p-~i~W~-k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~v~~  805 (816)
T 3dmk_A          740 GFPKP-QVTWK-KAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC--EAINGIGSGLSAVIM  805 (816)
T ss_dssp             EESCC-EEECC-EECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEE--EEECSSSSCEEEEEE
T ss_pred             cCCCC-eEEEE-ecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEE--EEEeCCCCCcEEEEE
Confidence            76443 34443 321110    0   00      1123333     3789988  789999998665433

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.74  E-value=2.2e-08  Score=65.81  Aligned_cols=69  Identities=14%  Similarity=0.127  Sum_probs=52.6

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|.|..+.  +.+|..|.|+|+........       ...+   .|.+++.|.|||.|.|..|.|.+|....+..
T Consensus        20 ~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T   99 (108)
T 2djs_A           20 TMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT   99 (108)
T ss_dssp             CSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESSCEEEECCCEEEEC
T ss_pred             CCCEEEEEECCCCCCCCeEEEEEEEEEECCCCCcceeEEecCccEEEEcCCCCCCEEEEEEEEEeCCEECCCCCCEEEEe
Confidence            4689999999853  35788999999987643311       1233   4666999999999999999999988776654


Q ss_pred             c
Q psy15979        135 K  135 (152)
Q Consensus       135 ~  135 (152)
                      .
T Consensus       100 ~  100 (108)
T 2djs_A          100 L  100 (108)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.74  E-value=4e-08  Score=71.68  Aligned_cols=62  Identities=13%  Similarity=0.016  Sum_probs=37.3

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCcee-ecCCC---CCCCCeEEEEEEecCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIF-RSHPQ---GRLPNSYNITWMVSSY   80 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~-~~~~~---~~~~~~~~L~W~~~~~   80 (152)
                      ..|.|.+++.+|+|.|+|.|.|..+...+   .+.|.. +.++.+ ...+.   ......+.|.|.+.+.
T Consensus        64 ~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~-~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~  132 (213)
T 2x1w_L           64 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG-YRIYDVVLSPSHGIELSVGEKLVLNCTARTE  132 (213)
T ss_dssp             TEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECB-CCEEEEEEESCSCEEEETTCCEEEEEEEEEC
T ss_pred             ccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeC-CcccceEEcCCCCeEEcCCCCEEEEEEEECC
Confidence            46999999999999999999996554443   233333 222222 22211   1246788999988753

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.73  E-value=1.2e-08  Score=65.73  Aligned_cols=46  Identities=22%  Similarity=0.542  Sum_probs=38.4

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.|+.+.    .+.|.|.+++.+|+|.|+|+|.|..|.....+.|.
T Consensus        48 ~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   93 (95)
T 2ckn_A           48 QLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN   93 (95)
T ss_dssp             CCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred             ecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEE
Confidence            45566777774    45899999999999999999999999988877664

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.73  E-value=2e-07  Score=68.51  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=49.1

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCce-------EEEEEEecCCC---C------ceeecCCC---C
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKH-------RAYLELSGKPN---P------AIFRSHPQ---G   65 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-------~~~~~v~~~P~---p------~~~~~~~~---~   65 (152)
                      .+|+.+.. .....+|.|.+++.+|+|.|+|.|.|..|..       ...+.|...+.   |      +.+...+.   .
T Consensus        60 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v  139 (238)
T 2p1y_A           60 PDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTV  139 (238)
T ss_dssp             CTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEE
T ss_pred             cceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEE
Confidence            45777764 3456789999999999999999999987631       12344444332   1      01111111   1


Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .....+.|.|.+.+.++ . ...||+.
T Consensus       140 ~~G~~v~L~C~~~~~p~-~-~i~W~k~  164 (238)
T 2p1y_A          140 WEGETAILNCSYENSAF-D-YFPWYQQ  164 (238)
T ss_dssp             ETTSCEEEEEECCCTTC-C-EEEEEEE
T ss_pred             eCCCeEEEEEEEecCCC-C-cEEEEEE
Confidence            24678999999876533 2 2334554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.73  E-value=3.5e-08  Score=76.24  Aligned_cols=73  Identities=19%  Similarity=0.225  Sum_probs=47.7

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc----eEEE--EEEecCC--CCceeecCCC---CCCCCeEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK----HRAY--LELSGKP--NPAIFRSHPQ---GRLPNSYNITW   75 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~----~~~~--~~v~~~P--~p~~~~~~~~---~~~~~~~~L~W   75 (152)
                      .++.+..  ..+.|.|.+++.+|+|.|+|+|.|..|.    ....  +.|...+  .||.+...+.   ......+.|.|
T Consensus       171 ~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C  248 (339)
T 3o4o_C          171 EKFLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPC  248 (339)
T ss_dssp             SSEEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCC
T ss_pred             ceeEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEE
Confidence            5666642  3358999999999999999999999983    3444  4444333  2344433221   12357788888


Q ss_pred             Ee---cCCC
Q psy15979         76 MV---SSYT   81 (152)
Q Consensus        76 ~~---~~~~   81 (152)
                      .+   .+.+
T Consensus       249 ~~~~~~g~P  257 (339)
T 3o4o_C          249 KVFLGTGTP  257 (339)
T ss_dssp             CEEESSSCC
T ss_pred             EEECCCCCC
Confidence            88   5554

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.73  E-value=6.7e-08  Score=64.46  Aligned_cols=82  Identities=13%  Similarity=0.087  Sum_probs=57.1

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLV  117 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A  117 (152)
                      ..|.+|..... .....+++.|.|..+.   +.+|..|.|+|+.......        ....+.   |.+++.|+|||.|
T Consensus        16 ~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   94 (120)
T 1x5f_A           16 PLPSAPRDVVA-SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMA   94 (120)
T ss_dssp             CCCCCCEEEEE-EEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCCCcEE-EecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCCEEEEEEEE
Confidence            45555543321 1234678999999754   3588999999998754321        123444   5669999999999


Q ss_pred             EcCCCCCCCCCCccccc
Q psy15979        118 RKRFDRGNSTNGGLIVP  134 (152)
Q Consensus       118 ~N~~G~g~~s~~~~~~~  134 (152)
                      .|..|.|.++....+.+
T Consensus        95 ~n~~G~g~~S~~~~~~T  111 (120)
T 1x5f_A           95 QNKHGSGESSAPLRVET  111 (120)
T ss_dssp             ECSSCEEEECCCEEEEC
T ss_pred             ECCCccCCCCCCEEEEe
Confidence            99999999988766554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.73  E-value=1.1e-07  Score=73.25  Aligned_cols=74  Identities=15%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCce-------EEEEEEecCCCCceeecCCC-CCCCCeEEEEEEecCCCCc-ce
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKH-------RAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPL-EE   85 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-------~~~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~pi-~~   85 (152)
                      .....|.|.+++.+|+|.|+|.|.|..|..       ...+.|...|.++.+..... ......+.|.|.+.+.+|. ..
T Consensus        71 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~  150 (327)
T 2wng_A           71 NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDIT  150 (327)
T ss_dssp             CCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCE
T ss_pred             CceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcE
Confidence            446689999999999999999999997752       23566667777665542211 2346789999998765433 24


Q ss_pred             EEE
Q psy15979         86 FKI   88 (152)
Q Consensus        86 y~~   88 (152)
                      +.|
T Consensus       151 v~W  153 (327)
T 2wng_A          151 LKW  153 (327)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.73  E-value=1.2e-07  Score=78.45  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC---CCCCCeEEEEEEecCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSY   80 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~   80 (152)
                      ++|+.+..  .++...|.|.+++.+|+|.|+|.|.|..|.....+.|.....|. +...+.   ......+.|.|.+.+.
T Consensus        61 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~-~~~~~~~~~v~~G~~v~l~C~~~~~  139 (585)
T 2ocw_A           61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPG-LLNDTKVYTVDLGRTVTINCPFKTE  139 (585)
T ss_pred             eceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCcc-ccCCCccEEEEcCCCEEEEEEecCC
Confidence            35777764  34456899999999999999999999999877766665433222 111111   1245789999998765


Q ss_pred             CCcceEEE
Q psy15979         81 TPLEEFKI   88 (152)
Q Consensus        81 ~pi~~y~~   88 (152)
                      .+...+.|
T Consensus       140 ~~~~~v~W  147 (585)
T 2ocw_A          140 NAQKRKSL  147 (585)
T ss_pred             CCCccEEE
Confidence            44333433

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.72  E-value=9.5e-09  Score=83.35  Aligned_cols=112  Identities=12%  Similarity=0.101  Sum_probs=65.1

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeec-CC-CCCCCCeEEEEEEecCCCCcceEEEEEE--E
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS-HP-QGRLPNSYNITWMVSSYTPLEEFKIKYR--K   92 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~-~~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r--~   92 (152)
                      .++|.|.+++.+|+|.|+|+|.|. ......+.|..+|....... .. ....+..+.|.|.+.++++. .+.|...  .
T Consensus       289 ~~~L~I~~v~~~D~G~Y~C~A~N~-~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p-~i~W~k~g~~  366 (423)
T 3qs7_E          289 ILFAFVSSVARNDTGYYTCSSSKH-PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKS  366 (423)
T ss_dssp             EEEEEESSCCTTTCEEEEEEETTE-EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC-EEEEEETTEE
T ss_pred             EEEEEEeecCHHHCEEEEEEEecC-CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC-eEEEEECCEE
Confidence            357999999999999999999999 44444555555442211110 00 11235788999998876543 4444321  1


Q ss_pred             CCCCC---CCcce---E--EecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         93 IPGNE---PSPMS---N--QLTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        93 ~~~~~---~~~~~---~--~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      .....   .....   .  .-.+.+.|.|  .|.|..|....+....+
T Consensus       367 l~~~~~~~~~~~~~~~~~~~~~D~G~YtC--~A~N~~G~~~~s~~L~v  412 (423)
T 3qs7_E          367 FPCEQKGLDNGYSISKFCNHKHQPGEYIF--HAENDDAQFTKMFTLNI  412 (423)
T ss_dssp             EECBCCBCSSSSEEEEECCCTTCCSCEEE--EEEETTEEEEEEEEEC-
T ss_pred             CCCccccccCCcEEEEEecccccCEEEEE--EEEcCCceEEEEEEEEE
Confidence            10100   01111   1  1245899999  78999997754443333

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.72  E-value=1.9e-07  Score=71.19  Aligned_cols=84  Identities=15%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCC---ceE----EEEEEecCCC------------CceeecCCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG---KHR----AYLELSGKPN------------PAIFRSHPQ   64 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G---~~~----~~~~v~~~P~------------p~~~~~~~~   64 (152)
                      .+|+.+..  .+...+|.|.+++.+|+|.|.|.|.|..|   ...    ..+.|...|.            ++.+...+.
T Consensus        91 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (282)
T 1qok_A           91 QGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPA  170 (282)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECS
T ss_pred             cCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCC
Confidence            36888765  34568899999999999999999999987   211    2455555431            222221111


Q ss_pred             ---CCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         65 ---GRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        65 ---~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                         ......+.|.|.+.+..  . ...||+.
T Consensus       171 ~~~v~~G~~v~L~C~~~~~~--~-~v~W~k~  198 (282)
T 1qok_A          171 IMSASPGEKVTITCSASSSV--S-YMHWFQQ  198 (282)
T ss_dssp             EEEECTTCCEEEEEEESSCC--S-CCEEEEE
T ss_pred             EEEEcCCCcEEEEEEecCCC--c-eEEEEEE
Confidence               12468899999987654  2 2344554

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.72  E-value=1.1e-07  Score=72.60  Aligned_cols=105  Identities=15%  Similarity=0.232  Sum_probs=64.8

Q ss_pred             eEEEEceeCCCCCEEEEEEEE-cCCCceE---EEEEEecC----CCCceeecCCC----CCCCCeEEEEEEecCCCCcce
Q psy15979         18 HTLMIRKVVASDFGNYSCEAT-NPMGKHR---AYLELSGK----PNPAIFRSHPQ----GRLPNSYNITWMVSSYTPLEE   85 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~-N~~G~~~---~~~~v~~~----P~p~~~~~~~~----~~~~~~~~L~W~~~~~~pi~~   85 (152)
                      ..|.|.+++.+|+|.|+|.|. |..|...   ..+.+...    +.+|.+...+.    ......+.|.|.+.+.++ ..
T Consensus       162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~-p~  240 (315)
T 1itb_B          162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS-DI  240 (315)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTT-SE
T ss_pred             ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCC-Ce
Confidence            489999999999999999999 8999873   34433211    34455443221    124678999999877543 33


Q ss_pred             EEEEEEE---CCCCCC-------------------CcceEEe-----cC-CCeEEEEEEEEcCCCCCCC
Q psy15979         86 FKIKYRK---IPGNEP-------------------SPMSNQL-----TG-TNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        86 y~~~~r~---~~~~~~-------------------~~~~~~L-----~~-~~~Y~~rV~A~N~~G~g~~  126 (152)
                      +.| ++.   ......                   ....+.|     .+ .+.|.|  .|.|.+|....
T Consensus       241 i~W-~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C--~a~N~~G~~~~  306 (315)
T 1itb_B          241 AYW-KWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC--FAKNTHGIDAA  306 (315)
T ss_dssp             EEE-EETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEE--EEECTTCCEEE
T ss_pred             eEE-EECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEE--EEecCCCceeE
Confidence            443 331   111110                   0013333     33 788998  77999997743

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.72  E-value=3.1e-08  Score=71.21  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             CEeEEEEce-eCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRK-VVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~-v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.+|.|.+ ++.+|+|.|+|+|.|..|.....+.+.
T Consensus        42 ~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           42 HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            345899999 999999999999999999866655443

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=4.1e-09  Score=68.57  Aligned_cols=51  Identities=29%  Similarity=0.451  Sum_probs=39.3

Q ss_pred             cccCCC----cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCC
Q psy15979          2 RLETTE----RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (152)
Q Consensus         2 ~l~~~~----r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P   54 (152)
                      +|..+.    ||.+...+....|.|.+++.+|+|.|+|.|.|  +...+.+.|.++|
T Consensus        47 ~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~~~~~~l~V~~~P  101 (101)
T 2edk_A           47 ELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG--GQCEAELIVEEKQ  101 (101)
T ss_dssp             BCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS--CEECCBEEEECCC
T ss_pred             ECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC--CcEEEEEEEeCCC
Confidence            344444    78888888888999999999999999999999  4444455555554

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=4e-08  Score=65.38  Aligned_cols=68  Identities=12%  Similarity=0.228  Sum_probs=51.9

Q ss_pred             CCCeEEEEEEec--CCCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      ..+++.|+|..+  ...+|..|.|+|+.......        ....+.   |.+++.|.|||.|.|..|.|.++....+.
T Consensus        30 ~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  109 (119)
T 2ed7_A           30 SSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVA  109 (119)
T ss_dssp             CSSCEEEECCCCSCCSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEEECCEEEESSCBCSCCCCEEEE
T ss_pred             CCCEEEEEEeCCCCCCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEEEEEEEEcCCccCCCcCCEEEE
Confidence            468999999975  34578999999998754321        123443   66699999999999999999998876554


Q ss_pred             c
Q psy15979        134 P  134 (152)
Q Consensus       134 ~  134 (152)
                      +
T Consensus       110 T  110 (119)
T 2ed7_A          110 T  110 (119)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.71  E-value=1.5e-08  Score=66.43  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=41.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..++|+.+..++....|.|.+++.+|+|.|+|.|.|..+...+.+.|.
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~l~V~   96 (106)
T 2dlt_A           47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL   96 (106)
T ss_dssp             BCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSCCCCCBCEEEE
T ss_pred             ECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCCceEEEEEEEE
Confidence            46677899998878888999999999999999999999965555555554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.71  E-value=5.4e-09  Score=76.87  Aligned_cols=49  Identities=22%  Similarity=0.357  Sum_probs=39.8

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      |..+.|+.+  .....+|.|.+++.+|+|.|+|+|.|.+|.+.+++.|++.
T Consensus       158 l~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          158 ISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             ECCCCCCCC--SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCCCceEc--CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            444455433  2345679999999999999999999999999999999875

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.71  E-value=5.6e-08  Score=66.97  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=40.1

Q ss_pred             CCcEEEEEcC------CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE--Eec-CCCCcee
Q psy15979          6 TERRIMETRG------SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE--LSG-KPNPAIF   59 (152)
Q Consensus         6 ~~r~~i~~~~------~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~--v~~-~P~p~~~   59 (152)
                      +.++++....      ....|.|.+++.+|+|.|+|.|.|..|.+++.+.  |.. +|..|..
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~  119 (126)
T 2dav_A           57 GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI  119 (126)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCSCCCC
T ss_pred             CceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCeE
Confidence            4677774211      2578999999999999999999999999988544  445 4444443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.71  E-value=8.5e-08  Score=76.46  Aligned_cols=83  Identities=18%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce---EEEEEEecCCCCceeec-CCC--CCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~~~v~~~P~p~~~~~-~~~--~~~~~~~~L~W~~~~   79 (152)
                      .+|+.+...+....|.|.+++.+|+|.|+|.|.|..|..   ...+.|...+.+|.+.. .+.  ......+.|.|.+.+
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g  142 (438)
T 1qgc_4           63 PDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  142 (438)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             cCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEcc
Confidence            468888766778899999999999999999999998742   34556654443444332 111  112458999999865


Q ss_pred             CCCcc-eEEE
Q psy15979         80 YTPLE-EFKI   88 (152)
Q Consensus        80 ~~pi~-~y~~   88 (152)
                      ..|.. .+.|
T Consensus       143 ~~p~~~~v~W  152 (438)
T 1qgc_4          143 FYPKDINVKW  152 (438)
T ss_dssp             EBSSCEEEEE
T ss_pred             ccCCCcEEEE
Confidence            33322 4444

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.71  E-value=1.7e-08  Score=64.75  Aligned_cols=49  Identities=18%  Similarity=0.308  Sum_probs=39.6

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P   54 (152)
                      +|..+.|+.+.    .+.|.|.+++.+|+|.|+|.|.|..|.....+.|....
T Consensus        39 ~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   87 (95)
T 4hwu_A           39 HLGPNNRTVLI----GEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTD   87 (95)
T ss_dssp             EECCCSSEEEE----TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             ECCCCceEEEe----CCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeC
Confidence            34556777774    24799999999999999999999999988877776543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.70  E-value=6.7e-07  Score=68.02  Aligned_cols=115  Identities=15%  Similarity=0.172  Sum_probs=71.3

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCC-------ceEEEEEEecCCCCceeecCCC--CCCCCeEEEEEEecCCCCcceE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMG-------KHRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEF   86 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~~~~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~pi~~y   86 (152)
                      ....|.|.+++.+|+|.|+|.|.|..+       ++...+.|.+.+.+|.+...+.  ....+.++|.|...+..  ..|
T Consensus        60 ~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~--~~~  137 (257)
T 1b6u_A           60 SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSY--DMY  137 (257)
T ss_dssp             EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCC--SEE
T ss_pred             ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCC--cEE
Confidence            457899999999999999999997532       2334567776555555543322  23468999999987643  345


Q ss_pred             EEEEEECCCCC--------C---CcceE---EecCCCeEEEEEEEEcC---CCCCCCCCCcccccc
Q psy15979         87 KIKYRKIPGNE--------P---SPMSN---QLTGTNQYQNRRLVRKR---FDRGNSTNGGLIVPK  135 (152)
Q Consensus        87 ~~~~r~~~~~~--------~---~~~~~---~L~~~~~Y~~rV~A~N~---~G~g~~s~~~~~~~~  135 (152)
                      .| ++.-..-.        .   ....+   .+++.+.|.|  .|.|.   +.++.+++...+.+.
T Consensus       138 ~w-~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~D~G~Y~C--~a~~~~~p~~~s~~S~pl~L~V~  200 (257)
T 1b6u_A          138 HL-SREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRC--FGSFRDSPYEWSNSSDPLLVSVT  200 (257)
T ss_dssp             EE-EETTSSCEECCBCBCCSSSCCBEEEEEEECCSCEEEEE--EEECSSCTTBBCCCCCCEEECCB
T ss_pred             EE-EECCcccCcccccccccCCceeEEEEecccccCEEEEE--EEEcCCCCcccccCCCCEEEEEe
Confidence            54 44321100        0   01122   3446899999  55654   467778776645443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.70  E-value=9.1e-08  Score=74.10  Aligned_cols=71  Identities=18%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC--CCceEEE------EEEecCCCC--ceeecCC--CCCCCCeEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP--MGKHRAY------LELSGKPNP--AIFRSHP--QGRLPNSYNI   73 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~--~G~~~~~------~~v~~~P~p--~~~~~~~--~~~~~~~~~L   73 (152)
                      +.++...    ++.|.|.+++.+|+|.|+|.|.|.  .|.....      +.|...|.+  +.+ ...  .......+.|
T Consensus       174 ~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l  248 (329)
T 3oq3_B          174 GTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANI  248 (329)
T ss_dssp             SSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEE
T ss_pred             CceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEE
Confidence            4556554    368999999999999999999998  7655443      334444422  222 111  1123678999


Q ss_pred             EEEecCCC
Q psy15979         74 TWMVSSYT   81 (152)
Q Consensus        74 ~W~~~~~~   81 (152)
                      .|.+.+.+
T Consensus       249 ~C~~~g~p  256 (329)
T 3oq3_B          249 TCTAVSTS  256 (329)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99987764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.70  E-value=3.1e-08  Score=63.77  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=34.3

Q ss_pred             EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .......|.|.+++.+|+|.|+|.|.|..|.+...+.|..
T Consensus        57 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (100)
T 2kdg_A           57 SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV   96 (100)
T ss_dssp             ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEE
Confidence            3445578999999999999999999999999888766654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.70  E-value=3e-07  Score=66.41  Aligned_cols=114  Identities=12%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCC-------ceEEEEEEecCCCCceeecCCC--CCCCCeEEEEEEecCCCCcceE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMG-------KHRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEF   86 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~~~~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~pi~~y   86 (152)
                      ....|.|.+++.+|+|.|+|.|.|..+       ++...+.|.+.+.+|.+...+.  ...++.++|.|.+.+..  ..|
T Consensus        61 ~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~--~~~  138 (201)
T 1nkr_A           61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSY--DMY  138 (201)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSCC--SEE
T ss_pred             ceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCCC--ceE
Confidence            457899999999999999999998531       2334566666554444433221  23468999999987532  345


Q ss_pred             EEEEEECCCCCC---------C--cceE---EecCCCeEEEEEEEE-cCCCCCCCCCCccc
Q psy15979         87 KIKYRKIPGNEP---------S--PMSN---QLTGTNQYQNRRLVR-KRFDRGNSTNGGLI  132 (152)
Q Consensus        87 ~~~~r~~~~~~~---------~--~~~~---~L~~~~~Y~~rV~A~-N~~G~g~~s~~~~~  132 (152)
                      .| ++....-..         .  ...+   .+++.+.|.|..... |.+.++.+|+...+
T Consensus       139 ~w-~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~d~G~Y~C~a~~~~~~~~~s~~S~~~~l  198 (201)
T 1nkr_A          139 HL-SREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPLLV  198 (201)
T ss_dssp             EE-EETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEETTEEEEECCCCCCEEE
T ss_pred             EE-EECCcccCcccccccccCCceEEEEEeCCcCCCeeEEEEEEcCCCCCcCCCCCCCEEE
Confidence            43 443211110         0  1122   234789999954322 33567877776543

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=98.70  E-value=8.2e-08  Score=69.52  Aligned_cols=81  Identities=11%  Similarity=0.195  Sum_probs=58.0

Q ss_pred             EecCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCC-CC--------C-c--ceEEecCCCeEEEEE
Q psy15979         50 LSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGN-EP--------S-P--MSNQLTGTNQYQNRR  115 (152)
Q Consensus        50 v~~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~-~~--------~-~--~~~~L~~~~~Y~~rV  115 (152)
                      |.++|.||...... . ..+++.|+|..+  ++.++..|.++|+..... .+        . .  ....|.+++.|+|||
T Consensus         2 v~~~P~~P~~~~~~-~-~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~L~p~t~Y~~~V   79 (205)
T 1cfb_A            2 VQDVPNAPKLTGIT-C-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRV   79 (205)
T ss_dssp             CCCCCCCCEEEEEE-E-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEE
T ss_pred             cccCCCCCCCcEEE-e-cCCEEEEEEECcccCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEEeCCCCCEEEEEE
Confidence            45677776543221 2 678999999986  457899999999876432 11        1 1  123788899999999


Q ss_pred             EEEcCCCCCCCC-CCccc
Q psy15979        116 LVRKRFDRGNST-NGGLI  132 (152)
Q Consensus       116 ~A~N~~G~g~~s-~~~~~  132 (152)
                      .|.|..|.|.++ ....+
T Consensus        80 ~A~n~~G~~~~s~~~~~~   97 (205)
T 1cfb_A           80 IAFNKIGASPPSAHSDSC   97 (205)
T ss_dssp             EEEETTEECCCCCCCCCE
T ss_pred             EEEECCccCCCCCCceeE
Confidence            999999999998 44444

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.70  E-value=1.5e-07  Score=71.44  Aligned_cols=123  Identities=9%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             cccCCCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC------------------CCCceeec
Q psy15979          2 RLETTERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK------------------PNPAIFRS   61 (152)
Q Consensus         2 ~l~~~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~------------------P~p~~~~~   61 (152)
                      +|..++++.+...  +....|.|.+++.+|+|.|+|.|.|..+.....+.+.+.                  ..+|.+..
T Consensus       148 ~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  227 (312)
T 2y23_A          148 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE  227 (312)
T ss_dssp             EECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred             ECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceee
Confidence            4556677777653  456779999999999999999999987777766665311                  11122111


Q ss_pred             C-C-CCCCCCeEEEEEEecCCCCcceEEEEEEEC---C-CCC----CCcceEEe-----cCCCeEEEEEEEEcCCCCCCC
Q psy15979         62 H-P-QGRLPNSYNITWMVSSYTPLEEFKIKYRKI---P-GNE----PSPMSNQL-----TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        62 ~-~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~---~-~~~----~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      . . .......+.|.|.+.+.++...+.|. +..   . ...    .....+.|     .+.+.|.|  .|.|.+|....
T Consensus       228 ~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~-~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~N~~G~~~~  304 (312)
T 2y23_A          228 YLSWEVTGECNVLLKCKVANIKKETHIVWY-KDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEV--ILKDDRGKDKS  304 (312)
T ss_dssp             EEEEEEETTTEEEEEEEEESCCSSCEEEEE-ETTEEEEEECCC----CEEEEEECSCSGGGCEEEEE--EEESTTCCEEE
T ss_pred             cceEEEeCCCEEEEEEEEcCCCCCCEEEEe-eCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEE--EEEcCCCceee
Confidence            0 0 11246889999999876544345543 211   0 000    11123333     33788988  77999997644


Q ss_pred             C
Q psy15979        127 T  127 (152)
Q Consensus       127 s  127 (152)
                      +
T Consensus       305 ~  305 (312)
T 2y23_A          305 R  305 (312)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.70  E-value=4.8e-07  Score=68.41  Aligned_cols=87  Identities=21%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce---EEEEEEecCCC----------------Cc-eeecCC--
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSGKPN----------------PA-IFRSHP--   63 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~~~v~~~P~----------------p~-~~~~~~--   63 (152)
                      ++|+.+...+...+|.|.+++.+|+|.|.|.|.|..+..   ...+.|...|.                |. .+...+  
T Consensus        69 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (264)
T 2gjj_A           69 PDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE  148 (264)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCE
T ss_pred             CccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE
Confidence            478888766677899999999999999999999986532   12455554431                11 111111  


Q ss_pred             CCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         64 QGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        64 ~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ......++.|.|.+.+..+......||+.
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          149 VVKTGASVKISCKASGYSFTGYFINWVKK  177 (264)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence            11246789999998755331224445665

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=98.70  E-value=3.4e-07  Score=66.69  Aligned_cols=115  Identities=13%  Similarity=0.063  Sum_probs=74.2

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceEEE-EEEe----cCCCCceeecCC-CC--CCCCeEEEEEEecCCC------Ccc
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS----GKPNPAIFRSHP-QG--RLPNSYNITWMVSSYT------PLE   84 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v~----~~P~p~~~~~~~-~~--~~~~~~~L~W~~~~~~------pi~   84 (152)
                      .+.+.++..-..-.....|.|.+|..... +.+.    .+|.||...... ..  ....++.|+|..+...      .+.
T Consensus        63 ~~~~~~l~~~~~Y~~~V~A~N~~G~~~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~  142 (210)
T 3n06_B           63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTL  142 (210)
T ss_dssp             EECGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCE
T ss_pred             EeCCCCcccceeEEEEEEEEcCCCCeeCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEE
Confidence            33334455444455567899999987542 2232    357777543211 11  1357899999975422      357


Q ss_pred             eEEEEEEECCCCCCC------cceEE---ecCCCeEEEEEEEEcCCCC-CCCCCCcccc
Q psy15979         85 EFKIKYRKIPGNEPS------PMSNQ---LTGTNQYQNRRLVRKRFDR-GNSTNGGLIV  133 (152)
Q Consensus        85 ~y~~~~r~~~~~~~~------~~~~~---L~~~~~Y~~rV~A~N~~G~-g~~s~~~~~~  133 (152)
                      .|.|+|+......+.      ...+.   |.+++.|+|||+|+|..|. |+.|....+.
T Consensus       143 ~Y~v~y~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~  201 (210)
T 3n06_B          143 LYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQ  201 (210)
T ss_dssp             EEEEEEECTTCSSCEEEEEETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEE
T ss_pred             EEEEEEecCCCCCCEEEeccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEE
Confidence            999999987543321      12344   5669999999999999994 9999877553

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=98.70  E-value=1.1e-07  Score=62.43  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=51.0

Q ss_pred             CCCeEEEEEEecC----CCCcceEEEEEEECCCC---CC-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         67 LPNSYNITWMVSS----YTPLEEFKIKYRKIPGN---EP-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        67 ~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~---~~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ..+++.|+|..+.    +..|.+|.|.|+.....   .+       ....+.   |.+++.|+|+|.|.|..|.|.+|..
T Consensus        17 s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v~V~A~n~~G~G~~S~~   96 (102)
T 3n1f_C           17 SDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV   96 (102)
T ss_dssp             SSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTEECCCCCC
T ss_pred             CCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcCCceEEECCCCCCCCEEEEEEEEECCCcCCCCCCC
Confidence            4689999999753    45899999999987543   11       112343   5669999999999999999999987


Q ss_pred             ccccc
Q psy15979        130 GLIVP  134 (152)
Q Consensus       130 ~~~~~  134 (152)
                      ..+.+
T Consensus        97 ~~~~T  101 (102)
T 3n1f_C           97 MICET  101 (102)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            65543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.70  E-value=6.8e-08  Score=63.83  Aligned_cols=48  Identities=35%  Similarity=0.574  Sum_probs=39.5

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      +|..++|+.+..++....|.|.+++.+|+|.|+|.|    |.....+.|...
T Consensus        57 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~  104 (113)
T 2edh_A           57 TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR  104 (113)
T ss_dssp             BCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEEC
T ss_pred             ECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEe
Confidence            566788999988888889999999999999999999    666665555543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.69  E-value=4.3e-08  Score=75.50  Aligned_cols=110  Identities=20%  Similarity=0.311  Sum_probs=67.4

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cC-CCCceeecC-CC---CCCCCeEEEEEEecCCCCcceEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GK-PNPAIFRSH-PQ---GRLPNSYNITWMVSSYTPLEEFK   87 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~-P~p~~~~~~-~~---~~~~~~~~L~W~~~~~~pi~~y~   87 (152)
                      .....|.|.+++.+|+|.|+|.|.|..|.....+.|.  .. |.+|.+... +.   ......+.|.|.+.+.++ ..+.
T Consensus       177 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~-p~v~  255 (334)
T 1ry7_B          177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ-PHIQ  255 (334)
T ss_dssp             TTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSC-EEEE
T ss_pred             cceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCC-CeEE
Confidence            3456899999999999999999999999988765554  32 223333211 11   123577889998876543 3444


Q ss_pred             EEEEE---CC-----CCC-------CC--------cceEEe-----cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         88 IKYRK---IP-----GNE-------PS--------PMSNQL-----TGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        88 ~~~r~---~~-----~~~-------~~--------~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      | ++.   .+     ...       ..        ...+.|     .+.+.|.|  .|.|.+|....+.
T Consensus       256 W-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~~  321 (334)
T 1ry7_B          256 W-LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTC--LAGNSIGFSHHSA  321 (334)
T ss_dssp             E-EECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEE--EEEESSCCEEEEE
T ss_pred             E-EECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEE--EEeCCCCeEEEEE
Confidence            4 331   00     000       00        013333     33788988  7799999765543

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.69  E-value=3.7e-09  Score=76.69  Aligned_cols=110  Identities=11%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             EEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeecCC-CCCCCCeEEEEEEe-cCCCCcceEEEEEE--E
Q psy15979         20 LMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHP-QGRLPNSYNITWMV-SSYTPLEEFKIKYR--K   92 (152)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~-~~~~~~~~~L~W~~-~~~~pi~~y~~~~r--~   92 (152)
                      |.|.+++.+|+|.|+|.|.|..|....   .+.|...|.+....... .......+.|.|.+ .+.++ ..+.|...  .
T Consensus        71 l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~-~~v~W~~~g~~  149 (217)
T 2vr9_A           71 RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE-PTLIWIKDGVP  149 (217)
T ss_dssp             SCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESC-CEEEEEETTEE
T ss_pred             EEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCC-CeEEEEECCcC
Confidence            368999999999999999999997643   45554322211111000 01235778888887 44433 33444321  1


Q ss_pred             CCCC-------CC-----CcceEEec-----CCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         93 IPGN-------EP-----SPMSNQLT-----GTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        93 ~~~~-------~~-----~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ....       ..     ....+.|.     +.+.|.|  .|.|.+|....+...++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~G~~~~~~~~lv  204 (217)
T 2vr9_A          150 LDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC--IAQNLVGTRESSYAKLI  204 (217)
T ss_dssp             ECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEE--EEEETTEEEECCCEEEE
T ss_pred             CCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEE--EEEcccceeccccEEEE
Confidence            1100       00     01123333     3678888  77999998866644433

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=2.3e-08  Score=65.96  Aligned_cols=51  Identities=16%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P   54 (152)
                      +|..++++.+...+....|.|.+++.+|+|.|+|.|.|  ......+.|..+|
T Consensus        52 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--~~~~~~l~V~~~p  102 (113)
T 2cpc_A           52 EVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD--ESASFTVTVTEPP  102 (113)
T ss_dssp             ECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS--CEEEEEEEEECCC
T ss_pred             ECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec--CcEEEEEEEecCC
Confidence            35566788888777778999999999999999999999  4444456666555

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=98.69  E-value=4.5e-07  Score=65.43  Aligned_cols=113  Identities=11%  Similarity=0.167  Sum_probs=74.7

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EEEe--------------cCCC-Ccee---ecCCCCCCCCeEEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS--------------GKPN-PAIF---RSHPQGRLPNSYNITW   75 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v~--------------~~P~-p~~~---~~~~~~~~~~~~~L~W   75 (152)
                      +......|.++.+.-.-.++..|.|..|..... +.+.              ..|. |+..   .........+++.|+|
T Consensus        53 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W  132 (201)
T 2ha1_A           53 GHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSW  132 (201)
T ss_dssp             TTCCEEEECSCCTTEEEEEEEEEECTTSCEEEEEEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEEC
T ss_pred             CCccEEEecCCCCCCEEEEEEEEEecccccCceeEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEE
Confidence            335578888988777777788999999987652 1111              1121 1111   0011223468999999


Q ss_pred             EecCCCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         76 MVSSYTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        76 ~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ..+. .++..|.+.|+.......        ...++.   |.+++.|.|+|.|.|..|.|.+..
T Consensus       133 ~~p~-~~i~~Y~v~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s  195 (201)
T 2ha1_A          133 VSAS-DTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLIL  195 (201)
T ss_dssp             CCSC-TTEEEEEEEEEETTTCCCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEE
T ss_pred             eCCC-CCccEEEEEEEECCCCCceeEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEe
Confidence            9774 478999999997533221        113444   556999999999999999998753

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.68  E-value=9.6e-08  Score=73.19  Aligned_cols=105  Identities=10%  Similarity=-0.004  Sum_probs=63.6

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCceeecCCC----CCCCCeEEEEEEecCCCCcceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQ----GRLPNSYNITWMVSSYTPLEEFKIKYR   91 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~~~~~~~~----~~~~~~~~L~W~~~~~~pi~~y~~~~r   91 (152)
                      +.|.|.++..+|.|.|+|+|.|..|.....  +.|... .||.+...+.    ......+.|.|.+.++++...+.|. +
T Consensus       177 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~-~  254 (313)
T 4fqp_A          177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY-YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWS-T  254 (313)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC-EEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEE-E
T ss_pred             eeeeecccccccCeeEEEEEEccCcCccceeeeecccc-cCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEE-E
Confidence            469999999999999999999998766543  333322 2222221111    1235779999999876544445553 3


Q ss_pred             ECCCCCC----CcceEEe-----cCCCeEEEEEEEEcCCCCCCC
Q psy15979         92 KIPGNEP----SPMSNQL-----TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        92 ~~~~~~~----~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ....-..    ....+.|     .+.+.|.|  .|.|.+|....
T Consensus       255 ~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~  296 (313)
T 4fqp_A          255 TMGPLPPFAVAQGAQLLIRPVDKPINTTLIC--NVTNALGARQA  296 (313)
T ss_dssp             TTBSCCTTEEEETTEEEECCCSSCCEEEEEE--EEECSSCEEEE
T ss_pred             CCEECCCceEEeCCEEEECcCChhhCEEEEE--EEEeCCCcEEE
Confidence            2211100    1123333     33788988  78999997643

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=98.68  E-value=5.9e-07  Score=68.21  Aligned_cols=112  Identities=13%  Similarity=0.144  Sum_probs=78.9

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ......+.|.++.+.-.-.+...|.|..|.... .+.....|.+|..... .....+++.|+|..+. .++..|.++|+.
T Consensus       161 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~p~~P~~l~~-~~~~~~sv~l~W~~p~-~~~~~Y~v~~~~  238 (290)
T 3r8q_A          161 KPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRF-LATTPNSLLVSWQPPR-ARITGYIIKYEK  238 (290)
T ss_dssp             CTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEE-EEEETTEEEEEEECCS-SCCCEEEEEEEC
T ss_pred             CCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEEEEecCCCCCCCccEE-EeeCCCEEEEEEeCCC-CcccEEEEEEEe
Confidence            344567889999888777888899999886543 3444445555433221 1234689999999865 378899999997


Q ss_pred             CCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         93 IPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        93 ~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .....        .....+.   |.+++.|.|+|.|.|..|.|+|.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  284 (290)
T 3r8q_A          239 PGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL  284 (290)
T ss_dssp             TTSCCEECSSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             CCCCcceeEeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCcc
Confidence            65432        1123444   55699999999999999999875

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.67  E-value=6.3e-09  Score=70.61  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             EEEEcCCCceEEE---EEEe---cCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCC--C------
Q psy15979         35 CEATNPMGKHRAY---LELS---GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE--P------   98 (152)
Q Consensus        35 C~A~N~~G~~~~~---~~v~---~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~--~------   98 (152)
                      +.|.|..|....+   +.+.   ..|.+|..... .....+++.|+|..+.  +.+|..|.++|+......  .      
T Consensus         3 V~A~n~~G~g~~S~~~~~~~t~~~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~   81 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILF-PEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLA   81 (130)
T ss_dssp             CCCCCCCCCCCCCCCCSCCCCSCCCCCCCCCCEE-EEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEEC
T ss_pred             eEEEecccCCCCCCCcEEEEcCCCCCCCCCceEE-EecCCCEEEEEEcCCCCCCCceEEEEEEEEECCCCCceEEEEEeC
Confidence            3466887765432   2222   34554432210 1234689999999753  347889999999875432  1      


Q ss_pred             -CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         99 -SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        99 -~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                       ....+   .|.+++.|+|+|.|.|..|.|.++....+.+
T Consensus        82 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  121 (130)
T 1wfo_A           82 PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT  121 (130)
T ss_dssp             TTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             CCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEec
Confidence             11233   3666999999999999999999887655544

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=98.67  E-value=1.3e-07  Score=68.45  Aligned_cols=112  Identities=12%  Similarity=0.080  Sum_probs=71.6

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceEEE---EEEe---cCC-CCceeecCCCCCCCCeEEEEEEecC----CCCcceEE
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHRAY---LELS---GKP-NPAIFRSHPQGRLPNSYNITWMVSS----YTPLEEFK   87 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~---~~v~---~~P-~p~~~~~~~~~~~~~~~~L~W~~~~----~~pi~~y~   87 (152)
                      .+.+ ++.+.-.-.+...|.|..|....+   +.+.   ..| .+|.... ......+++.|+|..+.    +.++..|.
T Consensus        64 ~~~~-~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~-~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~  141 (205)
T 1cfb_A           64 SFVV-QMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVV-GQGTEPNNLVISWTPMPEIEHNAPNFHYY  141 (205)
T ss_dssp             EEEE-ECCSSEEEEEEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCE-EECSSTTCEEEECCCCCGGGTCSSSCEEE
T ss_pred             EEEE-eCCCCCEEEEEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeE-eecCCCCeEEEEEECCCccccCCCceEEE
Confidence            4455 776655556677899999865432   2222   233 2332111 01234679999999743    45789999


Q ss_pred             EEEEECCCCC-C--------CcceEE---ecCCCeEEEEEEEEcCCCCCCC-CCCccc
Q psy15979         88 IKYRKIPGNE-P--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNS-TNGGLI  132 (152)
Q Consensus        88 ~~~r~~~~~~-~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~-s~~~~~  132 (152)
                      ++|+...... +        ....+.   |.+++.|+|+|.|.|..|.|.+ +....+
T Consensus       142 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~  199 (205)
T 1cfb_A          142 VSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVG  199 (205)
T ss_dssp             EEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEE
T ss_pred             EEEEECCCCCCcEEEEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEE
Confidence            9999876542 1        123454   5559999999999999999995 555443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.67  E-value=3.3e-07  Score=75.01  Aligned_cols=83  Identities=18%  Similarity=0.259  Sum_probs=54.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce-----EEEEEEecCC-CCceeecCCC---CCCCCeEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSGKP-NPAIFRSHPQ---GRLPNSYNITWM   76 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~~~v~~~P-~p~~~~~~~~---~~~~~~~~L~W~   76 (152)
                      ++||.+...+....|.|.+++.+|+|.|+|+|.|..|..     ...+.|...+ .||.+...+.   ......+.|.|.
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~  137 (523)
T 2rcj_C           58 PTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCL  137 (523)
T ss_pred             CCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEE
Confidence            367776656677899999999999999999999988742     2245554332 3343332221   123568899999


Q ss_pred             ecCCCCc-ceEEE
Q psy15979         77 VSSYTPL-EEFKI   88 (152)
Q Consensus        77 ~~~~~pi-~~y~~   88 (152)
                      +.+..|. ..+.|
T Consensus       138 ~~g~~p~~~~v~W  150 (523)
T 2rcj_C          138 ISDFYPGAVTVAW  150 (523)
T ss_pred             eccccCCceEEEE
Confidence            8776543 24444

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.67  E-value=1.3e-07  Score=68.77  Aligned_cols=75  Identities=15%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc----eEEEEEEecCCCCceeec-CCC--CCCCCeEEEEEEec
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK----HRAYLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVS   78 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~----~~~~~~v~~~P~p~~~~~-~~~--~~~~~~~~L~W~~~   78 (152)
                      .+|+.+...+...+|.|.+++.+|+|.|+|.|.|..|.    ....+.|...+.||.+.. .+.  ......+.|.|.+.
T Consensus        60 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  139 (216)
T 2xzc_L           60 PDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN  139 (216)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             CCceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEE
Confidence            46888876667889999999999999999999999871    122455555444554432 211  11246899999987


Q ss_pred             CC
Q psy15979         79 SY   80 (152)
Q Consensus        79 ~~   80 (152)
                      +.
T Consensus       140 g~  141 (216)
T 2xzc_L          140 NF  141 (216)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.67  E-value=1.1e-07  Score=70.96  Aligned_cols=68  Identities=18%  Similarity=0.172  Sum_probs=43.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceE--EEEEEecCCCCceeecCCCCCCCCeEEEEEEe
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFRSHPQGRLPNSYNITWMV   77 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~--~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~   77 (152)
                      +|+.+..  ...+.+|.|.+++.+|+|.|+|.|.|..+...  ..+.|...|.+|....   ......+.|.|.+
T Consensus        71 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~---v~~G~~v~L~C~~  142 (268)
T 3mj6_A           71 NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLR---VRVGDTTQMRCSI  142 (268)
T ss_dssp             TTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEE---EETTCCEEECCBC
T ss_pred             CceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccc---cccCCcEEEEEEe
Confidence            4555521  22347899999999999999999999876553  3455555444332211   1235677888877

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.67  E-value=1.1e-07  Score=68.66  Aligned_cols=77  Identities=17%  Similarity=0.234  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecCCCCceeecCCCC---CCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~P~p~~~~~~~~~---~~~~~~~L~W~~~~   79 (152)
                      ++||.+...+...+|.|.+++.+|+|.|+|.|.|..|...   ..+.|...+.+|.+...+..   .....+.|.|.+.+
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g  138 (213)
T 3r06_A           59 PSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNN  138 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             CCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEee
Confidence            5788887777788999999999999999999999875332   23555444455544332211   13457999999876


Q ss_pred             CCC
Q psy15979         80 YTP   82 (152)
Q Consensus        80 ~~p   82 (152)
                      ..|
T Consensus       139 ~~p  141 (213)
T 3r06_A          139 FYP  141 (213)
T ss_dssp             EBS
T ss_pred             ecC
Confidence            433

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=98.67  E-value=1.3e-07  Score=62.20  Aligned_cols=76  Identities=16%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCC-CCC-------CcceEE---ecCCCeEEEEEEEEcCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG-NEP-------SPMSNQ---LTGTNQYQNRRLVRKRF  121 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~-~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~  121 (152)
                      +|.||..... .....+++.|+|..+. .++..|.|.|+.... ...       ...++.   |.+++.|+|+|.|.|..
T Consensus         2 ~p~~P~~l~v-~~~t~~sv~lsW~~p~-~~i~~Y~v~y~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~~~~   79 (104)
T 2rb8_A            2 RLDAPSQIEV-KDVTDTTALITWMPPS-QPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGD   79 (104)
T ss_dssp             CCCCCEEEEE-ESCCSSCEEEEEECCS-SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCCCccEE-EEecCCeEEEEEcCCC-CccceEEEEEEECcCCCceEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEeCC
Confidence            3555543321 1245689999999765 678999999987642 211       123444   55599999999999999


Q ss_pred             CCCCCCCCc
Q psy15979        122 DRGNSTNGG  130 (152)
Q Consensus       122 G~g~~s~~~  130 (152)
                      |.|.++...
T Consensus        80 g~s~p~~~~   88 (104)
T 2rb8_A           80 MSSNPAKET   88 (104)
T ss_dssp             EECCCEEEE
T ss_pred             ccCCCEEEE
Confidence            999876544

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.67  E-value=8.8e-08  Score=69.38  Aligned_cols=74  Identities=16%  Similarity=0.311  Sum_probs=51.4

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc-------eEEEEEEecCC-CCceeec-CCC--CCCCCeEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-------HRAYLELSGKP-NPAIFRS-HPQ--GRLPNSYNITW   75 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-------~~~~~~v~~~P-~p~~~~~-~~~--~~~~~~~~L~W   75 (152)
                      +|+.+...+...+|.|.+++.+|+|.|+|.|.|..|.       ....+.|...| .+|.+.. .+.  ......+.|.|
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C  143 (218)
T 3s96_B           64 DRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVC  143 (218)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEE
T ss_pred             cceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEE
Confidence            5888876677889999999999999999999999872       12245555544 3444332 111  11247899999


Q ss_pred             EecCC
Q psy15979         76 MVSSY   80 (152)
Q Consensus        76 ~~~~~   80 (152)
                      .+.+.
T Consensus       144 ~~~g~  148 (218)
T 3s96_B          144 LISNF  148 (218)
T ss_dssp             EEEEE
T ss_pred             EECcc
Confidence            98763

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.67  E-value=2.6e-08  Score=66.45  Aligned_cols=68  Identities=16%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             CCCeEEEEEEec--CCCCcceEEEEEEECCCC-CCC------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGN-EPS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~-~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|.|..+  ++.+|..|.|+|+..... .+.      ...+   .|.+++.|+|||.|.|..|.|.++....+..
T Consensus        30 ~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T  109 (118)
T 1x3d_A           30 TKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT  109 (118)
T ss_dssp             ETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEEC
T ss_pred             CCCEEEEEECCCCCCCCcceEEEEEEecCCCCCCeEEeeccCCcEEEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEc
Confidence            468999999985  456889999999876542 221      1233   4666999999999999999999998665443

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=1.4e-07  Score=62.22  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=52.0

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCC-CCC-------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPG-NEP-------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~-~~~-------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      ..+++.|+|..+.  +.+|..|.|+|+.... ...       ....+   .|.+++.|.|||+|.|..|.|.++....+.
T Consensus        20 ~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~   99 (109)
T 2e7h_A           20 SPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQ   99 (109)
T ss_dssp             ETTEEEEECCCCCCSSSCCCEEEEEEEETTCCSTTTSEEEEESSSEEEEESCCTTSCEEEEEEEECSSCBCCCCSCEECC
T ss_pred             CCCEEEEEeCCCCCCCCcEeEEEEEEEECCCCCCceeEEEccCCCEEEECCCCCCCeEEEEEEEEeCCccCCCCCCEEEE
Confidence            4689999999753  3578999999998762 211       11233   466699999999999999999999877665


Q ss_pred             cc
Q psy15979        134 PK  135 (152)
Q Consensus       134 ~~  135 (152)
                      +.
T Consensus       100 T~  101 (109)
T 2e7h_A          100 TQ  101 (109)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.66  E-value=1e-07  Score=61.62  Aligned_cols=47  Identities=23%  Similarity=0.388  Sum_probs=38.8

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.|+.+...+....|.|.+++.+|+|.|+|.|    |.....+.|..
T Consensus        47 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V   93 (100)
T 2yuv_A           47 EIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFV   93 (100)
T ss_dssp             BCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEE
T ss_pred             ECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEE
Confidence            466678999988888889999999999999999999    66666655543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.66  E-value=6.8e-08  Score=75.99  Aligned_cols=106  Identities=18%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC---CCCCCeEEEEEEecCCCCcceEEEEEE--E
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIKYR--K   92 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi~~y~~~~r--~   92 (152)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|..... |.+...+.   ......+.|.|.+.+.++. .+.|...  .
T Consensus       275 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~  352 (403)
T 3laf_A          275 SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-PWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDV  352 (403)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE-EEEEECCCCEECCTTCCEEECCEEEEESCC-EEEEEETTEE
T ss_pred             cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECC-CcEeecCcceEEecCCeEEEEEEEeeccCC-EEEEEECCEE
Confidence            57999999999999999999999999888766654321 22221111   1235788999998765443 3444321  1


Q ss_pred             CCCCC----CCcceEEe-----cCCCeEEEEEEEEcCCCCCCCC
Q psy15979         93 IPGNE----PSPMSNQL-----TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        93 ~~~~~----~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .....    .....+.|     .+.+.|.|  .|.|.+|....+
T Consensus       353 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~  394 (403)
T 3laf_A          353 VIPSDYFQIVGGSNLRILGVVKSDEGFYQC--VAENEAGNAQSS  394 (403)
T ss_dssp             CCCSSSEEEETTTEEEESSCCGGGCEEEEE--EEEETTEEEEEE
T ss_pred             CCCCCcEEEecCccEEEeccccccCEEEEE--EEEcCCceEEEE
Confidence            11110    01122333     33788988  779999986544

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.66  E-value=3e-08  Score=76.96  Aligned_cols=62  Identities=26%  Similarity=0.396  Sum_probs=37.0

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCC-Cce---EEEEEEe--cCCC---CceeecCC-----CCCCCCeEEEEEEecC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPM-GKH---RAYLELS--GKPN---PAIFRSHP-----QGRLPNSYNITWMVSS   79 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~-G~~---~~~~~v~--~~P~---p~~~~~~~-----~~~~~~~~~L~W~~~~   79 (152)
                      ..|.|.+++.+|+|.|+|+|.|.. |..   ...+.|.  ..+.   ||.+....     .......+.|.|.+.+
T Consensus       177 ~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~  252 (349)
T 4dep_C          177 MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF  252 (349)
T ss_dssp             TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEE
T ss_pred             CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEE
Confidence            579999999999999999999998 654   4445444  3321   44443222     1123567788888763

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.65  E-value=2e-07  Score=61.68  Aligned_cols=68  Identities=19%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             CCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC-----cceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS-----PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~-----~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|+|..+  ...++..|.|+|+........     ...+.   |.+++.|.|+|.|.|..|.|.++....+..
T Consensus        30 ~~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  107 (116)
T 1x5g_A           30 SPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT  107 (116)
T ss_dssp             ETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCCCEEECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEEC
T ss_pred             CCCEEEEEEeCCCCCCCcccEEEEEEEECCCCccEEEecCCceEEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEEC
Confidence            468999999986  345789999999987654321     13344   556999999999999999999887765544

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.65  E-value=4.5e-08  Score=68.51  Aligned_cols=51  Identities=22%  Similarity=0.358  Sum_probs=41.5

Q ss_pred             cccCCCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.|+.+... ...+.|.|.+++.+|+|.|+|.|.|.+|.....+.|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  132 (154)
T 1fhg_A           81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV  132 (154)
T ss_dssp             ECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEE
Confidence            3556678887643 34679999999999999999999999999888766654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.65  E-value=5.7e-08  Score=68.92  Aligned_cols=51  Identities=25%  Similarity=0.374  Sum_probs=44.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.++.+..++....|.|.+++.+|+|.|+|.|.|.+|.....+.|..
T Consensus       143 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            456678888887777889999999999999999999999999988777653

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=5.2e-08  Score=64.89  Aligned_cols=77  Identities=21%  Similarity=0.365  Sum_probs=53.6

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecCC-CCcceEEEEEEECCCCCC--------CcceE---EecCCCeEEEEEEEEc
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSY-TPLEEFKIKYRKIPGNEP--------SPMSN---QLTGTNQYQNRRLVRK  119 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~~-~pi~~y~~~~r~~~~~~~--------~~~~~---~L~~~~~Y~~rV~A~N  119 (152)
                      +.|.+|.... ......+++.|+|..+.. .+|..|.|+|+......+        ....+   .|.+++.|.|||.|.|
T Consensus        16 ~~P~~P~~l~-~~~~~~~sv~l~W~~p~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   94 (118)
T 2yrz_A           16 GVPDTPTRLV-FSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQS   94 (118)
T ss_dssp             SCCCCCCCCE-ECCCBTTEEEEECCCCCCSSCEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTCEEEEEEEEEE
T ss_pred             CCCCCCCceE-EEeCCCCEEEEEeCCCCCCCCccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCCEEEEEEEEEc
Confidence            4555543221 123456899999997543 378999999998654321        12333   4666999999999999


Q ss_pred             CCCCCCCCCC
Q psy15979        120 RFDRGNSTNG  129 (152)
Q Consensus       120 ~~G~g~~s~~  129 (152)
                      ..|.|.++..
T Consensus        95 ~~G~g~~S~~  104 (118)
T 2yrz_A           95 QEGWGREREG  104 (118)
T ss_dssp             SSCEEEEEEE
T ss_pred             CCcCCCCcCC
Confidence            9999998863

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.65  E-value=2.9e-07  Score=68.82  Aligned_cols=35  Identities=14%  Similarity=0.317  Sum_probs=29.9

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+..  .+...+|.|.+++.+|+|.|.|.|.|.
T Consensus        71 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           71 QDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             cceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEec
Confidence            36888873  355778999999999999999999997

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.65  E-value=2.6e-07  Score=67.23  Aligned_cols=69  Identities=13%  Similarity=0.137  Sum_probs=47.0

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCC-CceEEEEE--EecCCCCceeecCCCC---CCCCeE-EEEEEe-cCCCCcceEEE
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPM-GKHRAYLE--LSGKPNPAIFRSHPQG---RLPNSY-NITWMV-SSYTPLEEFKI   88 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~~~--v~~~P~p~~~~~~~~~---~~~~~~-~L~W~~-~~~~pi~~y~~   88 (152)
                      .|.|.+++.+|+|.|+|.|.|.. |.....+.  |...|.++.+...+..   .....+ .|.|.+ .+.++ ..+.|
T Consensus        78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~-p~i~W  154 (231)
T 2pet_A           78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA-PKITW  154 (231)
T ss_dssp             CEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC-CEEEE
T ss_pred             eEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccC-CEEEE
Confidence            49999999999999999999997 77766544  4456665555433321   134555 999998 55443 33444

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.64  E-value=1.2e-07  Score=72.25  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             CcEEEEE--cCCEeEEEEceeCC-CCCEEEEEEEEcCCCceEEEEEEe--cCC----CCceeecCCCC---CCCCeEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRAYLELS--GKP----NPAIFRSHPQG---RLPNSYNIT   74 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~~~~v~--~~P----~p~~~~~~~~~---~~~~~~~L~   74 (152)
                      .|+.+..  ++....|.|.+++. +|+|.|+|+|.|..|.....+.|.  ..+    .+|.+...+..   .....+.|.
T Consensus        50 ~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~  129 (304)
T 2yd9_A           50 QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATML  129 (304)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEC
T ss_pred             CceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEE
Confidence            4555542  44458899999998 999999999999999866554443  332    12333332211   235788999


Q ss_pred             EEecCCCCcceEEEEEEECC---CCC-------CCcceEEec-----CCCeEEEEEEEEcCCCCCCCC
Q psy15979         75 WMVSSYTPLEEFKIKYRKIP---GNE-------PSPMSNQLT-----GTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        75 W~~~~~~pi~~y~~~~r~~~---~~~-------~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      |.+.+.++. .+.| ++...   ...       .....+.|.     +.+.|.|  .|.|..|....+
T Consensus       130 C~~~g~p~~-~v~W-~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~~  193 (304)
T 2yd9_A          130 CAASGNPDP-EITW-FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC--VATNSAGVRYSS  193 (304)
T ss_dssp             CEEECSSCC-EEEE-EETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEE--EEEETTEEEECC
T ss_pred             EECccCCCC-eEEE-EECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEE--EEEeCCCCEEec
Confidence            998765432 3444 33211   000       011133333     3778888  668999876544

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-07  Score=63.75  Aligned_cols=70  Identities=14%  Similarity=0.078  Sum_probs=50.7

Q ss_pred             CCCCeEEEEEEec----CCCCcceEEEEEEECCCC---C------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS----SYTPLEEFKIKYRKIPGN---E------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~---~------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ...+++.|.|..+    .+.+|..|.|+|+.....   .      .....+   .|.+++.|.|||.|.|..|.|.++..
T Consensus        31 ~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~  110 (124)
T 2dbj_A           31 ESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDP  110 (124)
T ss_dssp             SSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEEEEESTTSCEEEECCCSSSEEEECEEEEESSCBCCCCCC
T ss_pred             CCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEEEeCCCcceEEecCCCCCCEEEEEEEEECCCccCCCCCC
Confidence            3468999999976    235799999999743221   1      111233   46669999999999999999999987


Q ss_pred             cccccc
Q psy15979        130 GLIVPK  135 (152)
Q Consensus       130 ~~~~~~  135 (152)
                      ..+...
T Consensus       111 ~~~~T~  116 (124)
T 2dbj_A          111 VKIFIP  116 (124)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            766443

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=98.64  E-value=1.4e-07  Score=78.44  Aligned_cols=110  Identities=8%  Similarity=-0.033  Sum_probs=74.2

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCC-----CCcceEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-----TPLEEFKIK   89 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~-----~pi~~y~~~   89 (152)
                      +..+.|+|.+++.+|+|.|+|++.+.-....+.+.+..+|.+|....-. .....++.++|..+..     .++..|.++
T Consensus       248 ~~~~~L~I~nl~~sd~g~y~~~C~~~~~i~~~~l~v~~pP~~P~nl~C~-~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~  326 (488)
T 2q7n_A          248 GQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCE-THDLKEIICSWNPGRITGLVGPRNTEYTLF  326 (488)
T ss_dssp             SSCEEEECCSCCCCCSSCEEEEEEESSCEEEEEEEEECCCCCCCSCEEE-BSSSSEEEEEECCCSCCCCCTTSSCEEEEE
T ss_pred             ceEEEEEEeCCCcccCCcEEEEEEcCCeEEEEEEEeeCCCCCCcccEEE-EcCCCEEEEEEeCCCcCCCCCCCceeEEEE
Confidence            4567899999999999999998885333333456666777766532111 1245799999998532     357899999


Q ss_pred             EEECCCCC---------CCc--ceEEecC-CCeEEEEEEEEcCCCCCC
Q psy15979         90 YRKIPGNE---------PSP--MSNQLTG-TNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        90 ~r~~~~~~---------~~~--~~~~L~~-~~~Y~~rV~A~N~~G~g~  125 (152)
                      |+..+...         ...  ..+.+.+ .+.|.|+|.|.|..|.+.
T Consensus       327 y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~  374 (488)
T 2q7n_A          327 ESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ  374 (488)
T ss_dssp             ETTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEE
T ss_pred             EEECCCCCCCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCcc
Confidence            86542210         111  2334555 599999999999999954

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.64  E-value=1.7e-08  Score=73.82  Aligned_cols=100  Identities=12%  Similarity=0.083  Sum_probs=63.1

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-CCCCCeEEEEEEecCCCCcceEEEEEEECCCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN   96 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~   96 (152)
                      ..|.|.+++.+|+|.|+|.|.|...+....+.|...|  ........ ......+.|.|.+.+..|...+.| ++....-
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~V~~~p--~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W-~k~g~~~  130 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGW--LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY-LQNGKGR  130 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTSBCCCCEEEEEECSS--EEEECSCSEEETTCCEEEEEEEGGGCCCEEEEE-EETTEEE
T ss_pred             cEEEEecccccCCEEEEEEeCCCcccccEEEEEecCc--eEecCCceeEeCCCcEEEEEEecCCCCCceEEE-EECCcEe
Confidence            6899999999999999999999877777777776543  22211111 124678999999976656555555 3321100


Q ss_pred             C--CCcceE-----EecCCCeEEEEEEEEcCCC
Q psy15979         97 E--PSPMSN-----QLTGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        97 ~--~~~~~~-----~L~~~~~Y~~rV~A~N~~G  122 (152)
                      .  .....+     ..++.+.|.|  .|.|..|
T Consensus       131 ~~~~~~~~L~i~~v~~~D~G~Y~C--~a~n~~~  161 (204)
T 3sgj_C          131 KYFHHNSDFYIPKATLKDSGSYFC--RGLVGSK  161 (204)
T ss_dssp             EEEEECCCEEESSCCGGGCEEEEE--EEEETTE
T ss_pred             ecccCCceEEECcCCcccCEEEEE--EEEeCCC
Confidence            0  011222     3444899999  6688544

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.64  E-value=6.6e-08  Score=68.36  Aligned_cols=47  Identities=26%  Similarity=0.446  Sum_probs=41.8

Q ss_pred             CCcEEEEEcCCEeEEEEceeC-CCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ++|+.+...+..+.|.|.+++ .+|+|.|+|.|.|.+|.....+.|.+
T Consensus       134 ~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  181 (184)
T 3b5h_A          134 ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  181 (184)
T ss_dssp             GGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEE
Confidence            478999888888999999999 99999999999999999998766653

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.64  E-value=4.3e-08  Score=69.16  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--E--EEEecCCCCceeec--CCCCCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--Y--LELSGKPNPAIFRS--HPQGRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~--~~v~~~P~p~~~~~--~~~~~~~~~~~L~W~~~~   79 (152)
                      +.|+.+..   .+.|.|.+++.+|+|.|+|.|.|..+....  .  +.+..+|.......  .........+.|.|.+.+
T Consensus        48 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g  124 (189)
T 2v5t_A           48 DNRFAMLA---NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG  124 (189)
T ss_dssp             CTTEEECT---TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEE
T ss_pred             CCeEEEec---CCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEcc
Confidence            45666643   346999999999999999999999865433  2  33333332110000  001123578899999876


Q ss_pred             CCCcceEEEEEEEC---CCCC-----CCcceEEec-----CCCeEEEEEEEEcCCCCCCCC
Q psy15979         80 YTPLEEFKIKYRKI---PGNE-----PSPMSNQLT-----GTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        80 ~~pi~~y~~~~r~~---~~~~-----~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .++ ..+.| ++..   ....     .....+.|.     +.+.|.|  .|.|.+|....+
T Consensus       125 ~p~-~~v~W-~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~~~~~  181 (189)
T 2v5t_A          125 SPE-PAISW-FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC--RATNKAGEDEKQ  181 (189)
T ss_dssp             ESC-CEEEE-EETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEE--EEEETTEEEEEE
T ss_pred             CCC-CeEEE-EECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEE--EEEeCCCceeEE
Confidence            533 34444 3321   1110     011223333     3788988  679999976543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.64  E-value=1.9e-08  Score=71.37  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=59.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN   96 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~   96 (152)
                      ..+|.|.+++.+|+|.|+|.|.|..|.....  |...+.++...    ......+.|.|.+.+. |...+.|. +.....
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~l~--V~~~~~~~~~~----v~~g~~~~l~C~~~~~-p~~~v~W~-~~~~~~  138 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANSDTH----LLQGQSLTLTLESPPG-SSPSVQCR-SPRGKN  138 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEEEEEEE--EEEEEESSCSE----EETTCCEEEEEECCTT-CCCEEEEE-CTTSCE
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCCcEEEE--EEEecCCCCce----eecCCCEEEEEEcCCC-CCCEEEEE-eCCCcc
Confidence            5569999999999999999999998754433  33222221111    1235789999998775 44445553 221100


Q ss_pred             CCCcceEE-----ecCCCeEEEEEEEEcCCCCCC
Q psy15979         97 EPSPMSNQ-----LTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        97 ~~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      ......+.     .++.+.|.|.+  .|..|.-.
T Consensus       139 ~~~~~~L~i~~v~~~d~G~Y~C~a--~n~~~~~~  170 (184)
T 2ny1_B          139 IQGGKTLSVSQLELQDSGTWTCTV--LQNQKKVE  170 (184)
T ss_dssp             EEESSEEEESSCCGGGCEEEEEEE--EETTEEEE
T ss_pred             ccCceEEEEecCCcCCCeEEEEEE--EECCceEE
Confidence            01112233     34488999954  68776543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.63  E-value=3.2e-08  Score=75.52  Aligned_cols=106  Identities=8%  Similarity=-0.071  Sum_probs=63.7

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCceeecCCC----CCCCCeEEEEEEecCCCCcceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQ----GRLPNSYNITWMVSSYTPLEEFKIKYR   91 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~~~~~~~~----~~~~~~~~L~W~~~~~~pi~~y~~~~r   91 (152)
                      +.|.|.++..+|.|.|+|+|.|..|.....  +.|... .||.+...+.    ......+.|.|.+.+.++...+.| ++
T Consensus       172 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W-~k  249 (308)
T 4fom_A          172 SQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ-YAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVW-SR  249 (308)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC-EEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEEC-CB
T ss_pred             ccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe-cCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEE-EE
Confidence            469999999999999999999998876553  333322 1222221111    123467899999887655444444 33


Q ss_pred             ECCCCC----CCc-ce-----EEecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         92 KIPGNE----PSP-MS-----NQLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        92 ~~~~~~----~~~-~~-----~~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ....-.    ... ..     ...++.+.|.|  .|.|.+|....+
T Consensus       250 ~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C--~A~N~~G~~~~~  293 (308)
T 4fom_A          250 LDGQWPDGLLASDNTLHFVHPLTFNYSGVYIC--KVTNSLGQRSDQ  293 (308)
T ss_dssp             SSSCCCSSCBCSTTEEECCSCCCSCCCSEEEE--EEEETTEEEEEE
T ss_pred             CCeECCCcEEEcCCeEEEECCCChhhCEEEEE--EEEeCCCcEEEE
Confidence            221111    111 11     13344789988  789999976443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.63  E-value=1.2e-07  Score=74.24  Aligned_cols=90  Identities=14%  Similarity=0.018  Sum_probs=57.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcC--CCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCC-CcceEEEEEEEC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNP--MGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYT-PLEEFKIKYRKI   93 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~--~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~-pi~~y~~~~r~~   93 (152)
                      ...|.|.+++.+|+|.|+|.|.|.  .|.....+.|....           .....+.|.|.+.+.+ |...+.| ++..
T Consensus       254 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~-----------v~g~~~~l~C~~~g~p~p~~~i~W-~~~~  321 (363)
T 1wio_A          254 PLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR-----------ATQLQKNLTCEVWGPTSPKLMLSL-KLEN  321 (363)
T ss_dssp             SCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE-----------ECCCSSSEEEEEESSCCTTCCEEE-ECSS
T ss_pred             ceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE-----------ecCCCeeEEEEEccccCCCccEEE-EeCC
Confidence            458999999999999999999999  99888877665431           0135577888887653 3222443 2221


Q ss_pred             CCCCCC-c---ceEEecCCCeEEEEEEEEcC
Q psy15979         94 PGNEPS-P---MSNQLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        94 ~~~~~~-~---~~~~L~~~~~Y~~rV~A~N~  120 (152)
                      ..-... .   .....++.+.|.|  .|.|.
T Consensus       322 ~~~~~~~~l~i~~v~~~d~G~Y~C--~a~~~  350 (363)
T 1wio_A          322 KEAKVSKREKAVWVLNPEAGMWQC--LLSDS  350 (363)
T ss_dssp             SSCSEEESSSEEEESSCCSEEEEE--EECSS
T ss_pred             CceeeeeeeeeeeeccccceeEEE--EEecC
Confidence            111011 1   2234555899999  44553

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=98.63  E-value=1.3e-07  Score=70.11  Aligned_cols=112  Identities=9%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEe---cCCCCce-eecCCCCCCCCeEEEEEEecC--CCCcceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELS---GKPNPAI-FRSHPQGRLPNSYNITWMVSS--YTPLEEFK   87 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~---~~P~p~~-~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~   87 (152)
                      ....+.|.++.+.-.-.+.+.|.|..|....  .+.+.   ..|.+|. +..  .....+++.|+|..+.  +.++..|.
T Consensus        56 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~~--~~~~~~sv~l~W~~p~~~~g~i~~Y~  133 (234)
T 3f7q_A           56 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAF--NVVSSTVTQLSWAEPAETNGEITAYE  133 (234)
T ss_dssp             SSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCCCCCCEE--EECSSSCEEEECCCCSCCSSCCCEEE
T ss_pred             CccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcCCCCCCCCCccEE--EEecCCEEEEEEcCCCCCCCceeEEE
Confidence            3456889999988888888899999886533  23332   3344332 221  1234688999999753  35789999


Q ss_pred             EEEEECCCCC-------------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         88 IKYRKIPGNE-------------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        88 ~~~r~~~~~~-------------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ++|+......             .....+.   |.+++.|.|+|.|.|..|.|.++..
T Consensus       134 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  191 (234)
T 3f7q_A          134 VCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA  191 (234)
T ss_dssp             EEEEEBCTTSCBSSCCEECCCSCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEE
T ss_pred             EEEEECCCCCCccCcceEEEecCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCc
Confidence            9999764332             1112344   5669999999999999999998763

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.63  E-value=6e-07  Score=66.93  Aligned_cols=76  Identities=12%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecC------------CCCceeecCCC---C
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGK------------PNPAIFRSHPQ---G   65 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~------------P~p~~~~~~~~---~   65 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.|.|..+...   ..+.|...            +.++.+...+.   .
T Consensus        66 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v  145 (253)
T 3uzq_A           66 QGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAV  145 (253)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEE
T ss_pred             CCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEE
Confidence            367877643  3467799999999999999999999766542   23444431            11222222111   2


Q ss_pred             CCCCeEEEEEEecCCC
Q psy15979         66 RLPNSYNITWMVSSYT   81 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~   81 (152)
                      ....++.|.|.+.+..
T Consensus       146 ~~G~~v~L~C~~~~~~  161 (253)
T 3uzq_A          146 SLGQRATISCRASENV  161 (253)
T ss_dssp             CTTSCEEEEEEESSCC
T ss_pred             eCCCCEEEEEEecCcc
Confidence            2468899999987643

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.63  E-value=7.4e-08  Score=75.55  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=48.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYR   91 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r   91 (152)
                      ..++|.|.+++.+|+|.|+|.|.|..|....   .+.+...+.|..............+.|.|.+....|...+.|...
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~  138 (395)
T 1bih_A           60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKR  138 (395)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEE
T ss_pred             CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEec
Confidence            4568999999999999999999999998763   344443333332211111234678899998633233345555443

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=2.2e-07  Score=61.99  Aligned_cols=69  Identities=16%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCCC---------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP---------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~---------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|+|..+...+|..|.++|+.......         ....+.   |.+++.|.|+|.|.|..|.|.++....+..
T Consensus        31 ~~~sv~l~W~~p~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  110 (119)
T 2ee2_A           31 SSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFT  110 (119)
T ss_dssp             ETTEEEEECCCCSCTTCCEEEEEEEESSSCGGGCEEEEEETTCSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEC
T ss_pred             cCCEEEEEecCCCCCccceEEEEEEECCCcccCcEEEEcCCCEeEEEECCCCCCCEEEEEEEEEcCCccCCCCCCEEEEC
Confidence            46899999998644678999999988653220         112444   555999999999999999999998776554


Q ss_pred             c
Q psy15979        135 K  135 (152)
Q Consensus       135 ~  135 (152)
                      .
T Consensus       111 ~  111 (119)
T 2ee2_A          111 K  111 (119)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.63  E-value=1.8e-07  Score=67.68  Aligned_cols=75  Identities=19%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeec-CCC--CCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~-~~~--~~~~~~~~L~W~~~~   79 (152)
                      .+|+.+...+....|.|.+++.+|+|.|+|.|.|..|....   .+.|...+.||.+.. .+.  ......+.|.|.+.+
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g  137 (210)
T 1lk3_L           58 PARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNN  137 (210)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             cccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEe
Confidence            36888876667789999999999999999999999875432   455555444444332 111  113568999999875


Q ss_pred             C
Q psy15979         80 Y   80 (152)
Q Consensus        80 ~   80 (152)
                      .
T Consensus       138 ~  138 (210)
T 1lk3_L          138 F  138 (210)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.62  E-value=1e-07  Score=79.43  Aligned_cols=102  Identities=8%  Similarity=-0.032  Sum_probs=61.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCC-
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG-   95 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~-   95 (152)
                      ...|.|.+++.+|+|.|+|+|.|..|.+...+.|.+.- ||.+...+     ....|.|.+.+.++. .+.|....... 
T Consensus       377 ~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~-~P~i~~~~-----~~~~l~C~a~g~P~p-~i~W~~~~~~~~  449 (527)
T 3qs9_E          377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR-KPQVLAEA-----SASQASCFSDGYPLP-SWTWKKCSDKSP  449 (527)
T ss_dssp             SSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C-CCEEEECC-----CCE---EEEECSSCC-EEEEECCC----
T ss_pred             CcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec-CCeEEEeC-----CCCEEEEEEEEEcCC-eEEEEECCCCcC
Confidence            46899999999999999999999999999887777653 33443322     123578888776543 44443110000 


Q ss_pred             ---C-------------CCC---c--ceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         96 ---N-------------EPS---P--MSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        96 ---~-------------~~~---~--~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                         .             ...   .  ..+   .+++.+.|.|  .|.|.+|....+
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C--~A~N~~G~~~~~  503 (527)
T 3qs9_E          450 NCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC--CAYNSLGTSCET  503 (527)
T ss_dssp             -CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEE--EEECSSCEEEEE
T ss_pred             CCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEE--EEEeCCCCceeE
Confidence               0             000   0  111   2345889988  889999987543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.62  E-value=1e-07  Score=67.77  Aligned_cols=47  Identities=26%  Similarity=0.400  Sum_probs=42.0

Q ss_pred             CCCcEEEEEcCCEeEEEEceeC-CCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          5 TTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|+.+...+..+.|.|.+++ .+|+|.|+|.|+|.+|.....+.|.
T Consensus       140 ~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  187 (190)
T 2wv3_A          140 SSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR  187 (190)
T ss_dssp             TTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEE
Confidence            5688999888888899999999 7999999999999999998876664

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.62  E-value=4.3e-07  Score=67.83  Aligned_cols=85  Identities=15%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCC----CceE--EEEEEecCC-------------CCceeecCCC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM----GKHR--AYLELSGKP-------------NPAIFRSHPQ   64 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~----G~~~--~~~~v~~~P-------------~p~~~~~~~~   64 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.|.|..    +...  ..+.|...+             .++.+...+.
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~  146 (256)
T 3umt_A           67 KGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPS  146 (256)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECS
T ss_pred             cceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCC
Confidence            467877643  456779999999999999999999982    2211  234444311             1222222121


Q ss_pred             ---CCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         65 ---GRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        65 ---~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                         .....+++|.|.+.+..+.  ...||+.
T Consensus       147 ~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~  175 (256)
T 3umt_A          147 SLSASLGERVSITCRASQDIGS--NLNWLQQ  175 (256)
T ss_dssp             EEEECTTCCEEEEEEESSCCTT--CEEEEEE
T ss_pred             eEEEECCCCEEEEEEEecCCCc--EEEEEEE
Confidence               1246889999998764432  3445664

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.62  E-value=1.3e-07  Score=70.04  Aligned_cols=73  Identities=18%  Similarity=0.186  Sum_probs=43.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecC-CCCCCCCeEEEEEEecCCCCcc-eEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH-PQGRLPNSYNITWMVSSYTPLE-EFKIK   89 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~-~~~~~~~~~~L~W~~~~~~pi~-~y~~~   89 (152)
                      ..+|.|.+++.+|+|.|+|.+.|..|.....+.|.....|...... ........+.|.|.+.+..|.. .+.|.
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~  155 (248)
T 3pv7_A           81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWE  155 (248)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEE
T ss_pred             cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEE
Confidence            4459999999999999999999999887776555433222221111 1112345677999987632322 44443

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=9.2e-08  Score=65.21  Aligned_cols=82  Identities=10%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             ecCCCCce-eecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCC-----------CCC------CcceEE---ecCCC
Q psy15979         51 SGKPNPAI-FRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG-----------NEP------SPMSNQ---LTGTN  109 (152)
Q Consensus        51 ~~~P~p~~-~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~-----------~~~------~~~~~~---L~~~~  109 (152)
                      ...|.||. ... ......+++.|.|..+....+..|.++|+....           ..+      ....+.   |.+++
T Consensus        13 ~~~P~~P~~~~~-~~~~~~~sv~L~W~~p~~~g~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~gL~p~t   91 (127)
T 2dmk_A           13 LTAPNPPSIREE-LCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGT   91 (127)
T ss_dssp             CSSCCCCEEEEE-EEEEETTEEEEEEECSCCSSEEEEEEEEEEESCCSCHHHHHHTGGGSEEEEEECSSEEEEESCCSSC
T ss_pred             cCCCcCCCCCCE-EEeeeCCEEEEEECCCCCCCccceEEEEEEecccccccccccCCCCcEEeecccCCeEEECCCCCCC
Confidence            45677776 221 123357899999998754447889999986210           011      112333   66699


Q ss_pred             eEEEEEEEEcCCCCCCCCCCccccc
Q psy15979        110 QYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus       110 ~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      .|.|||.|.|.+|. .++....+.+
T Consensus        92 ~Y~frV~A~N~~G~-~~S~~v~~~T  115 (127)
T 2dmk_A           92 RYIFIVKAINQAGS-RNSEPTRLKT  115 (127)
T ss_dssp             EEEEEEEEEESSCE-EECCCEEEEC
T ss_pred             EEEEEEEEEeCCCC-CCCcCeEeEe
Confidence            99999999999999 4555444433

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.61  E-value=9.1e-08  Score=62.05  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=36.6

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ++|+.+.. .....+|.|.+++.+|+|.|+|.|.| .|.....+.|.
T Consensus        58 ~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~  103 (108)
T 3m45_A           58 DNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLT  103 (108)
T ss_dssp             CTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEEEEEEE
T ss_pred             cCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEEEEEEE
Confidence            45887753 33578999999999999999999999 88888765554

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=6.6e-08  Score=62.22  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=32.3

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .....|.|.+++.+|+|.|+|.|.|.+|.+...+.|.
T Consensus        61 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   97 (99)
T 2yr3_A           61 AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT   97 (99)
T ss_dssp             TTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEE
T ss_pred             CCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEE
Confidence            3567899999999999999999999999988765554

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.61  E-value=9.2e-08  Score=74.94  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=66.2

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC---CCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|.....+.|.....| .+...+.   ......+.|.|.+.+.++. .+.| ++.
T Consensus       255 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p-~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W-~~~  331 (382)
T 1cs6_A          255 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQP-DWLDVITDTEADIGSDLRWSCVASGKPRP-AVRW-LRD  331 (382)
T ss_dssp             SSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE-EEEECCCCEEEETTCCEEEECEEEEESCC-EEEE-EET
T ss_pred             CCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCC-CcccCCCccEEcCCCeEEEEEEeeeecCC-EEEE-EEC
Confidence            45689999999999999999999999998886665533222 2221111   1235788999998765443 3444 332


Q ss_pred             C---CCCC---CCcceEEec-----CCCeEEEEEEEEcCCCCCCC
Q psy15979         93 I---PGNE---PSPMSNQLT-----GTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        93 ~---~~~~---~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .   ....   .....+.|.     +.+.|.|  .|.|.+|....
T Consensus       332 g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~  374 (382)
T 1cs6_A          332 GQPLASQNRIEVSGGELRFSKLVLEDSGMYQC--VAENKHGTVYA  374 (382)
T ss_dssp             TEECCCCSSEEEETTEEEESSCCGGGCEEEEE--EEEETTEEEEE
T ss_pred             CEECCCCceEEEECCEEEECcCCcccCEEEEE--EEEeCCCeEEE
Confidence            1   1110   001223333     3788888  77999997643

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.61  E-value=4e-07  Score=68.46  Aligned_cols=81  Identities=21%  Similarity=0.203  Sum_probs=52.2

Q ss_pred             CCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCce-EEEEEEecCCCCceeecCCC---CCCCCeEEEEEEecCC
Q psy15979          6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-RAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSY   80 (152)
Q Consensus         6 ~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~~~v~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~   80 (152)
                      +.|+.+. ..+..+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|...+.| .+...+.   ......+.|.|.+.+.
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~v~l~C~~~~~  127 (291)
T 1qz1_A           49 QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-MFKNAPTPQEFKEGEDAVIVCDVVSS  127 (291)
T ss_dssp             CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCS-EEEECCSSEEEETTSCEEECCEEECS
T ss_pred             CceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccc-cccCCCCcccccCCCeEEEEEEeccC
Confidence            4566664 34567899999999999999999999999754 344555433222 2211111   1235788999998766


Q ss_pred             CCcceEEE
Q psy15979         81 TPLEEFKI   88 (152)
Q Consensus        81 ~pi~~y~~   88 (152)
                      ++. .+.|
T Consensus       128 p~~-~v~W  134 (291)
T 1qz1_A          128 LPP-TIIW  134 (291)
T ss_dssp             SCC-EEEE
T ss_pred             CCC-EEEE
Confidence            433 3444

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.61  E-value=9.7e-08  Score=69.89  Aligned_cols=83  Identities=14%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce---EEEEEEecCCCCceeecCCCC---CCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~~~v~~~P~p~~~~~~~~~---~~~~~~~L~W~~~~   79 (152)
                      ++||.+...+...+|.|.+++.+|+|.|+|.|.|..|..   ...+.|...+.+|.+...+..   .....+.|.|.+.+
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~  161 (237)
T 3sob_L           82 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN  161 (237)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcc
Confidence            578888777778899999999999999999999987632   224555555555554332111   12457999999876


Q ss_pred             CCC-cceEEE
Q psy15979         80 YTP-LEEFKI   88 (152)
Q Consensus        80 ~~p-i~~y~~   88 (152)
                      ..| ...+.|
T Consensus       162 ~~p~~~~v~W  171 (237)
T 3sob_L          162 FYPREAKVQW  171 (237)
T ss_dssp             EBSSCCEEEE
T ss_pred             cCCCceEEEE
Confidence            444 334444

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.61  E-value=1.3e-07  Score=61.92  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=33.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|..++|+.+..++....|.|.+++.+|+|.|+|.|.|
T Consensus        46 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   83 (108)
T 2dm7_A           46 TLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ   83 (108)
T ss_dssp             BCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred             ECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence            46677899998888888999999999999999999966

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.61  E-value=3.3e-07  Score=66.24  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecCC-CCceeecCCC---CCCCCeEEEEEEec
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKP-NPAIFRSHPQ---GRLPNSYNITWMVS   78 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~P-~p~~~~~~~~---~~~~~~~~L~W~~~   78 (152)
                      .+|+.+...+....|.|.+++.+|+|.|+|.|.|..|...   ..+.|...+ .||.+...+.   ......+.|.|.+.
T Consensus        61 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  140 (212)
T 1q0x_L           61 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTIT  140 (212)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred             cccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEE
Confidence            4688877666778999999999999999999999887422   234554333 3444432111   11356899999987


Q ss_pred             CCCC
Q psy15979         79 SYTP   82 (152)
Q Consensus        79 ~~~p   82 (152)
                      +..|
T Consensus       141 g~~p  144 (212)
T 1q0x_L          141 DFYP  144 (212)
T ss_dssp             EEBS
T ss_pred             EEeC
Confidence            6433

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=98.60  E-value=4.2e-07  Score=68.86  Aligned_cols=116  Identities=17%  Similarity=0.151  Sum_probs=77.8

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEe---cCC-CCceeecCCCCCCCCeEEEEEEec----CCCCcc
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS---GKP-NPAIFRSHPQGRLPNSYNITWMVS----SYTPLE   84 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~---~~P-~p~~~~~~~~~~~~~~~~L~W~~~----~~~pi~   84 (152)
                      ......+.|.++.+.-.-.+...|.|..|.... .+.+.   ..| .|+.+..  .....+++.|+|...    ...+|.
T Consensus       153 ~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~~~~~~t~~~~P~~~p~~~~--~~~~~~sv~l~W~~~~~~~~~g~i~  230 (290)
T 3l5i_A          153 GTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRT--KKVGKNEAVLEWDQLPVDVQNGFIR  230 (290)
T ss_dssp             TTCSEEECCSCCCTTCEEEEEEEEEETTEECCCEEEEEESSCCCCSSCCCEEE--EEECSSCEEEEECCCCHHHHSSCCC
T ss_pred             CCCcceEEecCcCCccEEEEEEEEEeCCcccccEEEEeEccccCCCCCCeeeE--eeccCCEEEEEEcCCChhccCCEEE
Confidence            334556777888888888888999999886443 22222   233 3333332  123568999999832    346799


Q ss_pred             eEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         85 EFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        85 ~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      .|.+.|+......      ....++.   |.+++.|.|+|.|.|..| |.++....+
T Consensus       231 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~  286 (290)
T 3l5i_A          231 NYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTF  286 (290)
T ss_dssp             EEEEEEEETTSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEE
T ss_pred             EEEEEEEeCCCCeEEEEeCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEe
Confidence            9999999875432      1123454   555999999999999999 766665544

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.60  E-value=4.7e-08  Score=64.36  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ...|.|.+++.+|+|.|+|.|.|..|.+++.+.|.+
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  106 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV  106 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEE
Confidence            578999999999999999999999999998877653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.60  E-value=3.6e-07  Score=70.13  Aligned_cols=103  Identities=14%  Similarity=0.234  Sum_probs=62.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCC-------ceEEEEEEecCCCCceeecCCC--CCCCCeEEEEEEecCCCCcceE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMG-------KHRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEF   86 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~~~~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~pi~~y   86 (152)
                      ....|.|.+++.+|+|.|+|.|.|..+       +....+.|.+.+.+|.+...+.  ......+.|.|.+.+..  ..|
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~--~~~  149 (316)
T 3vh8_G           72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMF--EHF  149 (316)
T ss_dssp             BSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCC--SEE
T ss_pred             ceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCC--cEE
Confidence            356799999999999999999997432       1233466666554444443221  12468899999985432  244


Q ss_pred             EEEEEECCCCCC-----------CcceEEec-----CCCeEEEEEEEEcCCCC
Q psy15979         87 KIKYRKIPGNEP-----------SPMSNQLT-----GTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        87 ~~~~r~~~~~~~-----------~~~~~~L~-----~~~~Y~~rV~A~N~~G~  123 (152)
                      .| |+.......           ....+.|.     +.+.|.|  .|.|..|.
T Consensus       150 ~w-~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C--~a~n~~g~  199 (316)
T 3vh8_G          150 FL-HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRC--YGSVTHTP  199 (316)
T ss_dssp             EE-EETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEE--EEECTTCT
T ss_pred             EE-EECCCccccceeeeeecCCCceEEEEECCCChhhCceEEE--EEecCCCC
Confidence            44 333221111           01223333     3889998  77999885

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.60  E-value=2.7e-07  Score=69.38  Aligned_cols=116  Identities=15%  Similarity=0.102  Sum_probs=67.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--E--EEEecCCCCceeec--CCCCCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--Y--LELSGKPNPAIFRS--HPQGRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~--~~v~~~P~p~~~~~--~~~~~~~~~~~L~W~~~~   79 (152)
                      +.|+.+..   .+.|.|.+++.+|+|.|+|.|.|..+....  .  +.+..+|.......  .........+.|.|.+.+
T Consensus       144 ~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g  220 (291)
T 2wim_A          144 DNRFAMLA---NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG  220 (291)
T ss_dssp             CSSEEECT---TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCC
T ss_pred             CceEEEcc---CCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeec
Confidence            45666643   346999999999999999999999865432  2  33334442211000  001224678999999877


Q ss_pred             CCCcceEEEEEEEC---CCCC-----CCcceEE-----ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         80 YTPLEEFKIKYRKI---PGNE-----PSPMSNQ-----LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        80 ~~pi~~y~~~~r~~---~~~~-----~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .++. .+.|. +..   ....     .....+.     ..+.+.|.|  .|.|.+|..+.+.
T Consensus       221 ~p~p-~v~W~-~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~G~~~~~~  278 (291)
T 2wim_A          221 SPEP-AISWF-RNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVC--RATNKAGEDEKQA  278 (291)
T ss_dssp             BSCC-EEEEE-ETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEE--EEEETTEEEEEEE
T ss_pred             CCCC-eEEEE-ECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEE--EEEECCCceeeeE
Confidence            6433 35543 321   1111     0112233     334788988  7799999875443

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.60  E-value=3.2e-07  Score=61.04  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=51.6

Q ss_pred             CCCeEEEEEEecC----CCCcceEEEEEEECCCCCC-----------C-cceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         67 LPNSYNITWMVSS----YTPLEEFKIKYRKIPGNEP-----------S-PMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        67 ~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~~~-----------~-~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..+++.|+|..+.    +.+|..|.|+|+.......           . ...+   .|.+++.|.|+|.|.|..|.|.++
T Consensus        28 ~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S  107 (122)
T 1va9_A           28 TSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS  107 (122)
T ss_dssp             SSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEECCCC
T ss_pred             cCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEeCCCCCCCEEEEEEEEEcCCCCCCCc
Confidence            4689999999863    4579999999998764311           0 1233   366699999999999999999998


Q ss_pred             CCccccc
Q psy15979        128 NGGLIVP  134 (152)
Q Consensus       128 ~~~~~~~  134 (152)
                      ....+..
T Consensus       108 ~~~~~~T  114 (122)
T 1va9_A          108 SEINATT  114 (122)
T ss_dssp             CCEECCC
T ss_pred             cCEEEEe
Confidence            7765544

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.59  E-value=1.6e-07  Score=67.91  Aligned_cols=83  Identities=19%  Similarity=0.222  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce-----EEEEEEecCC-CCceeecCCC---CCCCCeEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSGKP-NPAIFRSHPQ---GRLPNSYNITWM   76 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~~~v~~~P-~p~~~~~~~~---~~~~~~~~L~W~   76 (152)
                      .+|+.+...+....|.|.+++.+|+|.|+|.|.|..+..     ...+.|...+ .||.+...+.   ......+.|.|.
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~  136 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCL  136 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEE
Confidence            478888776678899999999999999999999832211     1234554333 3444432211   112468899998


Q ss_pred             ecCCCCc-ceEEE
Q psy15979         77 VSSYTPL-EEFKI   88 (152)
Q Consensus        77 ~~~~~pi-~~y~~   88 (152)
                      +.+..|. ..+.|
T Consensus       137 ~~g~~p~~~~v~W  149 (212)
T 1nfd_E          137 VNDFYPGSATVTW  149 (212)
T ss_dssp             EEEEBSSCCEEEE
T ss_pred             EEeeECCccEEEE
Confidence            8765332 34444

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.59  E-value=5.2e-08  Score=69.39  Aligned_cols=50  Identities=22%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             cccCCCcEEEEEcCCEeEEEEce-eCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRK-VVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~-v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.++.+...+..+.|.|.+ ++.+|+|.|+|+|.|.+|..+..+.|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  194 (197)
T 2j8h_A          144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD  194 (197)
T ss_dssp             EECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEE
Confidence            45667888888777889999999 999999999999999999998877665

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.59  E-value=1.6e-08  Score=67.94  Aligned_cols=48  Identities=29%  Similarity=0.491  Sum_probs=39.5

Q ss_pred             CCcEEEE--EcCC--EeEEEEceeCCCCC-EEEEEEEEcCCCceEEEEEEecC
Q psy15979          6 TERRIME--TRGS--RHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         6 ~~r~~i~--~~~~--~~~L~I~~v~~~D~-G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      +.||.+.  ..+.  .+.|.|.+++.+|+ |.|+|.|.|.+|.+...+.|...
T Consensus        60 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~  112 (122)
T 2cry_A           60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  112 (122)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             CCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEEC
Confidence            4677773  2223  66899999999999 99999999999999998887754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.59  E-value=1.5e-07  Score=78.44  Aligned_cols=107  Identities=11%  Similarity=0.076  Sum_probs=60.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-CCCCCeEEEEEEecCCCCcceEEEEEEECCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~   95 (152)
                      ..+|.|.+|+.+|+|.|+|.|.|..|.....+.|...|.+......+. ........|.|.+.+.++ ..+.|.......
T Consensus       102 ~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~-P~i~W~~~~~~~  180 (527)
T 3qs9_E          102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPE-PIVEWVLCDSQG  180 (527)
T ss_dssp             EEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSC-CEEEEEEC----
T ss_pred             EEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEECCceeeccCCCcEEecCCceEEEEEEceecC-CeEEEEECCCCC
Confidence            456999999999999999999999999888777765543221111110 011345578898877643 234443211111


Q ss_pred             CC-----CCc-----ceEEecCCCeEEEEEEEEcCCCCCCC
Q psy15979         96 NE-----PSP-----MSNQLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        96 ~~-----~~~-----~~~~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ..     ...     ......+.+.|+|  .|.|.+|....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~d~G~Y~C--~A~N~~G~~~~  219 (527)
T 3qs9_E          181 ESCKEESPAVVKKEEKVLHELFGTDIRC--CARNELGRECT  219 (527)
T ss_dssp             ---------CEEECCSEECCCCSSCEEE--EEECSSCEEEE
T ss_pred             ccccccCCcEEEEeeeeccccCCEEEEE--EEEeCCCcccc
Confidence            00     000     1122345889999  78999997654

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.59  E-value=3.7e-07  Score=68.16  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCce------EEEEEEecCC-----------CCceeecCCC--
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELSGKP-----------NPAIFRSHPQ--   64 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~~~v~~~P-----------~p~~~~~~~~--   64 (152)
                      .+|+.+..  .....+|.|.+++.+|+|.|+|.|.|..|..      ...+.|...+           .++.+...+.  
T Consensus        72 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~  151 (257)
T 3gkz_A           72 KSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIM  151 (257)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEE
T ss_pred             cccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceE
Confidence            36787764  2456789999999999999999999973211      1234444431           1222222211  


Q ss_pred             -CCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         65 -GRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        65 -~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                       ......+.|.|.+.+..+...+ .||+.
T Consensus       152 ~v~~G~~v~L~C~~~~~~~~~~v-~W~k~  179 (257)
T 3gkz_A          152 SASPGEKVTLTCSASSSVSSSHL-YWYQQ  179 (257)
T ss_dssp             EECTTCCEEEEEEESSCCCGGGE-EEEEE
T ss_pred             EEeCCCcEEEEEEEccCccceEE-EEEEE
Confidence             1246889999998765433233 34554

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=5.1e-07  Score=61.03  Aligned_cols=68  Identities=12%  Similarity=0.247  Sum_probs=51.0

Q ss_pred             CCCeEEEEEEec----CCCCcceEEEEEEECCCCCC----------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         67 LPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEP----------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        67 ~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~----------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ..+++.|.|..+    .+.+|..|.++|+.......          ....+   .|.+++.|.|+|.|.|..|.|.++..
T Consensus        31 ~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  110 (134)
T 2edx_A           31 GSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSP  110 (134)
T ss_dssp             SSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEEEEEEEETTBCCCCCCC
T ss_pred             CCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCCCEEEEEEEEEcCCCcCCCCCC
Confidence            467999999976    23578999999988754321          11334   36669999999999999999999877


Q ss_pred             ccccc
Q psy15979        130 GLIVP  134 (152)
Q Consensus       130 ~~~~~  134 (152)
                      ..+..
T Consensus       111 ~~~~T  115 (134)
T 2edx_A          111 VLVRT  115 (134)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            65533

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.58  E-value=1.1e-07  Score=66.35  Aligned_cols=100  Identities=9%  Similarity=0.019  Sum_probs=63.4

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-CCCCCeEEEEEEecCCCCcceEEEEEEECCCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN   96 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~   96 (152)
                      ..|.|.+++.+|+|.|+|.|.|..++....+.|...|  ........ ......+.|.|.+.++.|...+.|. + .+..
T Consensus        51 ~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~-~-~g~~  126 (170)
T 3ry4_A           51 QPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEW--LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF-Q-NGKS  126 (170)
T ss_dssp             SSEEEEECCGGGCEEEEEEETTSBCCCCEEEEEECCS--EEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEE-E-TTEE
T ss_pred             cceEEEecccccCeEEEEEEeCCCceEeEEEEEECCc--eEecCCCceeecCCeEEEEEECCCCCCCceEEEE-E-CCeE
Confidence            4578889999999999999999888877777776543  22211111 1235789999998665555555553 3 1110


Q ss_pred             C---CCcceEE-----ecCCCeEEEEEEEEcCCCC
Q psy15979         97 E---PSPMSNQ-----LTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        97 ~---~~~~~~~-----L~~~~~Y~~rV~A~N~~G~  123 (152)
                      .   .....+.     ..+.+.|.|  .|.|.+|.
T Consensus       127 ~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~  159 (170)
T 3ry4_A          127 QKFSHLDPTFSIPQANHSHSGDYHC--TGNIGYTL  159 (170)
T ss_dssp             EEEESSCCEEEESSCCGGGCEEEEE--EEEETTEE
T ss_pred             ccccCCCCeEEEEeccccCCEEEEE--EEEeCcCc
Confidence            0   1112233     344889998  56898884

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.58  E-value=2.9e-07  Score=61.89  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             CCCeEEEEEEec----CCCCcceEEEEEEECCCCCCC-------cceEEecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEPS-------PMSNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~~-------~~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|+|..+    .+..|..|+|+|+........       .....|.+++.|.|+|.|.|..|.|.++....+.+
T Consensus        30 ~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T  108 (117)
T 1wj3_A           30 TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPR  108 (117)
T ss_dssp             ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEESSSEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECC
T ss_pred             eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCCeEEeCCCcEEEEECCCCCEEEEEEEEECCCccCCCCCCEEEEc
Confidence            467899999975    345789999999987543211       12234888999999999999999999997765544

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=2.7e-08  Score=64.20  Aligned_cols=43  Identities=30%  Similarity=0.450  Sum_probs=34.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.++.+..   .+.|.|.+++.+|+|.|+|+|.|..|.....+.|.
T Consensus        53 ~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~   95 (100)
T 2edj_A           53 DPRATIQE---QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLD   95 (100)
T ss_dssp             CSSCEECT---TCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEE
T ss_pred             CCCEEEcC---CCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEE
Confidence            45666542   34799999999999999999999999887765554

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.57  E-value=6.4e-08  Score=72.91  Aligned_cols=115  Identities=10%  Similarity=-0.021  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecCC-CCCCCCeEEEEEEecCCCCc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPL   83 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~-~~~~~~~~~L~W~~~~~~pi   83 (152)
                      .++.+...+..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.  .+|.+....... .......+.|.|.+.+..+.
T Consensus        40 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~  119 (292)
T 4dkd_C           40 PHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLE  119 (292)
T ss_dssp             SSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGG
T ss_pred             CceEEeccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcc
Confidence            345555556678999999999999999999999988776665554  333322211111 11235788999998763221


Q ss_pred             ceEEEEEEECCCCCCC--------cceEE-----ecCCCeEEEEEEEEcCCCCC
Q psy15979         84 EEFKIKYRKIPGNEPS--------PMSNQ-----LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        84 ~~y~~~~r~~~~~~~~--------~~~~~-----L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..+.|+. ..+.....        ...+.     ..+.+.|.|  .|.|..|..
T Consensus       120 ~~v~W~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~~~~  170 (292)
T 4dkd_C          120 AGVSLVR-VRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQC--SALMGGRKV  170 (292)
T ss_dssp             SSEEEEE-GGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEE--EECSTTSCE
T ss_pred             eeEEEEe-cCCCccccCCcccccCCceEEECCCCHHHCeEEEE--EEEeCCCce
Confidence            3455543 21111100        11133     344889998  456876644

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.57  E-value=7.9e-08  Score=63.80  Aligned_cols=80  Identities=14%  Similarity=0.044  Sum_probs=54.1

Q ss_pred             ecCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCC-CCC-------CcceE---EecCCCeEEEEEEE
Q psy15979         51 SGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPG-NEP-------SPMSN---QLTGTNQYQNRRLV  117 (152)
Q Consensus        51 ~~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~-~~~-------~~~~~---~L~~~~~Y~~rV~A  117 (152)
                      ...|.||..... .....+++.|.|..+  +..++..|.|+|+.... ..+       ....+   .|.+++.|+|||.|
T Consensus        13 ~~~P~~P~~~~~-~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A   91 (117)
T 1uem_A           13 SDLPGPPSKPQV-TDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRA   91 (117)
T ss_dssp             CCSCBCCCCCEE-EEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCccCCCCCEE-EEecCCEEEEEEeCCCCCCcCceEEEEEEEECCCCCceeEcccccCcCEEEECCCCCCCEEEEEEEE
Confidence            355655532211 123468999999875  35688999999987642 111       11234   46669999999999


Q ss_pred             EcCCCCCCCCCCcc
Q psy15979        118 RKRFDRGNSTNGGL  131 (152)
Q Consensus       118 ~N~~G~g~~s~~~~  131 (152)
                      .|..|.|+++....
T Consensus        92 ~n~~G~s~~S~~~~  105 (117)
T 1uem_A           92 INPQGLSDPSPMSD  105 (117)
T ss_dssp             EETTEEEEECCCCC
T ss_pred             ECCCccCCCcCCCc
Confidence            99999999886543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.57  E-value=9e-08  Score=68.81  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=43.1

Q ss_pred             cccCCCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.++.+... +..+.|.|.+++.+|+|.|+|+|.|.+|.....+.|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  208 (212)
T 2r15_A          157 ALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV  208 (212)
T ss_dssp             EECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEE
Confidence            4566778888754 66789999999999999999999999999988777653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=7.9e-08  Score=63.97  Aligned_cols=48  Identities=29%  Similarity=0.377  Sum_probs=38.2

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEE--EEecCCCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL--ELSGKPNP   56 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~--~v~~~P~p   56 (152)
                      +.|+.+..++   +|.|.+++.+|+|.|+|.|.|..|.....+  .|...|.|
T Consensus        53 ~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           53 DSRIKQLENG---VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP  102 (118)
T ss_dssp             STTEEEEETT---EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCC
T ss_pred             CCeEEEccCC---EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCC
Confidence            5777776544   899999999999999999999999988764  44444444

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.1e-07  Score=60.35  Aligned_cols=52  Identities=19%  Similarity=0.406  Sum_probs=41.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEecCCCCc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSGKPNPA   57 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~~~P~p~   57 (152)
                      +|..+.||.+..++....|.|.+++.+|+|.|+|.    +|....  .+.|.+.|.||
T Consensus        47 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           47 ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             BCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSSCBCCEEEEEECSCCCC
T ss_pred             ECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCCceEEEEEEEeCccCCC
Confidence            46677899998777788999999999999999998    555544  45566676654

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=98.56  E-value=2.4e-06  Score=64.34  Aligned_cols=112  Identities=12%  Similarity=0.130  Sum_probs=78.0

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      ......+.|.++.+.-.-.+...|.|..|.... .+.+...|.+|..... .....+++.|.|..+. .++..|.++|+.
T Consensus        64 ~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~t~p~~P~~l~~-~~~~~~sv~l~W~~p~-~~i~~Y~v~~~~  141 (283)
T 1tdq_A           64 QPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRV-GSRTATSLDLEWDNSE-AEAQEYKVVYST  141 (283)
T ss_dssp             CTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEE-EEECSSCEEEEEECCS-SCCSEEEEEEEE
T ss_pred             CCCCCEEEecCCCCCCEEEEEEEEECCCCCCCCeeEEEECCCCCCCceEE-EecCCCeEEEEecCCC-CCccEEEEEEEe
Confidence            345667889999888777888899998876543 2333345555433211 1234689999999875 578899999988


Q ss_pred             CCCCCC-------C---cceEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         93 IPGNEP-------S---PMSNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        93 ~~~~~~-------~---~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ......       .   ...+.   |.+++.|.|+|.|.|..|.|.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~  189 (283)
T 1tdq_A          142 LAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA  189 (283)
T ss_dssp             TTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             CCCCcceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcce
Confidence            754331       1   22333   55699999999999999988765

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.56  E-value=1.4e-07  Score=71.09  Aligned_cols=105  Identities=13%  Similarity=0.083  Sum_probs=57.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCc---eEEEEEEecC-CCCceeecCC-----CCCCCCeEEEEEEecCCCCcceEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGK-PNPAIFRSHP-----QGRLPNSYNITWMVSSYTPLEEFK   87 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~---~~~~~~v~~~-P~p~~~~~~~-----~~~~~~~~~L~W~~~~~~pi~~y~   87 (152)
                      .+.|.|.+++.+|+|.|+|+|.|..|.   ....+.|... |..+.....+     .......+.|.|.+....|  .+.
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~--~v~  127 (289)
T 3mjg_X           50 SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQL--VVT  127 (289)
T ss_dssp             EEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTS--CEE
T ss_pred             eEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCCCCc--eEE
Confidence            478999999999999999999999987   3445666544 3222111100     0123578899998873222  344


Q ss_pred             EEEEECCCCCC-----CcceEEecCCCeEEEEEEEEcCCCCCC
Q psy15979         88 IKYRKIPGNEP-----SPMSNQLTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        88 ~~~r~~~~~~~-----~~~~~~L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      |.+........     ........+.+.|.|  .|.|..|...
T Consensus       128 w~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C--~a~n~~~~~~  168 (289)
T 3mjg_X          128 LHEKKGDVALPVPYDHQRGFSGIFEDRSYIC--KTTIGDREVD  168 (289)
T ss_dssp             EEESSCCSCCCCCEETTTEEEECCCSSEEEE--EEEETTEEEE
T ss_pred             EEeCCCCCccceeecCCcCeeeeccCcEEEE--EEEeCCceee
Confidence            43322111111     011223456899999  4577666443

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.56  E-value=5.5e-07  Score=61.26  Aligned_cols=68  Identities=16%  Similarity=0.265  Sum_probs=51.8

Q ss_pred             CCCeEEEEEEec-CCCCcceEEEEEEECCC----CCC--------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         67 LPNSYNITWMVS-SYTPLEEFKIKYRKIPG----NEP--------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        67 ~~~~~~L~W~~~-~~~pi~~y~~~~r~~~~----~~~--------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      .++++.|+|..+ ...+|..|.+.|+....    ..+        ...++   .|.+++.|+|+|.|.|..|.|.+|...
T Consensus        28 sstsi~vsW~~~~~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~Gp~S~~v  107 (120)
T 1ujt_A           28 TPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESK  107 (120)
T ss_dssp             BTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCCCCE
T ss_pred             cCceEEEEEccCCCCCcEeeEEEEEEECCCCCCCCccEEEEecCCCcCEEEECCCCCCCEEEEEEEEECCCccCCCCCCE
Confidence            568999999985 33578999999998764    111        11234   366699999999999999999999876


Q ss_pred             cccc
Q psy15979        131 LIVP  134 (152)
Q Consensus       131 ~~~~  134 (152)
                      .+.+
T Consensus       108 ~~~T  111 (120)
T 1ujt_A          108 TVRT  111 (120)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            5533

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.56  E-value=1e-06  Score=75.49  Aligned_cols=113  Identities=11%  Similarity=-0.007  Sum_probs=77.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEE--cCCCceEEE--EEEe----cCCCCceeecCCCCCCCCeEEEEEEecC----CCCc
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEAT--NPMGKHRAY--LELS----GKPNPAIFRSHPQGRLPNSYNITWMVSS----YTPL   83 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~--N~~G~~~~~--~~v~----~~P~p~~~~~~~~~~~~~~~~L~W~~~~----~~pi   83 (152)
                      ....+.|.++.+.+...|.|.|.  |..|....+  +.+.    .+|.+|..... .....+++.|+|..+.    ..++
T Consensus       314 ~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~-~~~~~~sv~l~W~~p~~~~~~~~~  392 (731)
T 2v5y_A          314 DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEV-VEVKSRQITIRWEPFGYNVTRCHS  392 (731)
T ss_dssp             CSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEE-EEECSSCEEEEEECCCHHHHCSSS
T ss_pred             CcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEE-EeccCCeEEEEEECCCccccccee
Confidence            34689999999999999999999  999976532  2222    23344433211 1235689999999853    3467


Q ss_pred             ceEEEEEEECCCCC------------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         84 EEFKIKYRKIPGNE------------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        84 ~~y~~~~r~~~~~~------------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..|.++|+......            .....+.   |.+++.|+|+|.|.|..|.|. +...
T Consensus       393 ~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~  453 (731)
T 2v5y_A          393 YNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQEL  453 (731)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCE
T ss_pred             eeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceE
Confidence            78999998764221            1123344   556999999999999999985 4444

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=98.56  E-value=3e-06  Score=63.62  Aligned_cols=81  Identities=15%  Similarity=0.250  Sum_probs=56.1

Q ss_pred             cCCCCceeec---CCCCCCC--CeEEEEEEecCCC------CcceEEEEEEECCCCCCC------cce---EEecCCCeE
Q psy15979         52 GKPNPAIFRS---HPQGRLP--NSYNITWMVSSYT------PLEEFKIKYRKIPGNEPS------PMS---NQLTGTNQY  111 (152)
Q Consensus        52 ~~P~p~~~~~---~~~~~~~--~~~~L~W~~~~~~------pi~~y~~~~r~~~~~~~~------~~~---~~L~~~~~Y  111 (152)
                      .+|.||....   ...+...  ..+.|+|..+...      .++.|.|+|+......+.      ...   ..|.+++.|
T Consensus       129 v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~~~~w~~~~~~~~~~~~l~~L~p~t~Y  208 (236)
T 1axi_B          129 VQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEY  208 (236)
T ss_dssp             BCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCBSSSEEEEEEEETTSCE
T ss_pred             cccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECCCCceEEEeccCCCEEEEeccCCCCEE
Confidence            5688876542   1111112  4599999986432      468999999987643311      122   357779999


Q ss_pred             EEEEEEEcCCC--CCCCCCCccc
Q psy15979        112 QNRRLVRKRFD--RGNSTNGGLI  132 (152)
Q Consensus       112 ~~rV~A~N~~G--~g~~s~~~~~  132 (152)
                      .|+|+|++..|  ||+.|....+
T Consensus       209 ~vqVRa~~~~gg~ws~WS~~~~~  231 (236)
T 1axi_B          209 EVRVRSKQRNSGNYGEFSEVLYV  231 (236)
T ss_dssp             EEEEEEEETTSSCCCCCCCCEEE
T ss_pred             EEEEEEEECCCCCcCCCCCCEEE
Confidence            99999999999  9999987755

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.55  E-value=5.7e-07  Score=67.82  Aligned_cols=38  Identities=29%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      ++|+.+...+...+|+|.+++.+|+|.|.|.+.|..+.
T Consensus        78 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~  115 (268)
T 1x9q_A           78 PDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPW  115 (268)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred             cccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCc
Confidence            47888876667789999999999999999999998653

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.55  E-value=1.6e-07  Score=64.95  Aligned_cols=51  Identities=22%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCc
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPA   57 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~   57 (152)
                      ++|+.+.. .....+|.|.+++.+|+|.|+|.|.|. |.....+.|  ..+|.+|
T Consensus        90 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A           90 DNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             CTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEEEEEEEEECCCC--
T ss_pred             cCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceEEEEEEEEeCCCCC
Confidence            46777643 445778999999999999999999999 888776544  4666654

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=98.55  E-value=2e-08  Score=84.33  Aligned_cols=101  Identities=11%  Similarity=0.087  Sum_probs=70.3

Q ss_pred             eeCCCCCEEEEEEEEcCCCceEEE---EEEecCCCCceeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCCC-
Q psy15979         24 KVVASDFGNYSCEATNPMGKHRAY---LELSGKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPGN-   96 (152)
Q Consensus        24 ~v~~~D~G~YtC~A~N~~G~~~~~---~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~-   96 (152)
                      +....|.|.|.|++.|.+|.+...   ...+.+|.+|.....  ....+++.|+|..+.   +.++..|.++|+..... 
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~~--~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~  378 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTA--VGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPES  378 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEEE--ECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-C
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCCcccceEE--EecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCC
Confidence            445678999999999999987653   222356666654432  345689999999753   34789999999873211 


Q ss_pred             ---------C------C--CcceE---EecCCCeEEEEEEEEcCCCCCCC
Q psy15979         97 ---------E------P--SPMSN---QLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        97 ---------~------~--~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                               .      .  ....+   .|.+++.|+|+|.|.|..|.+.+
T Consensus       379 ~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sp  428 (536)
T 3fl7_A          379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVT  428 (536)
T ss_dssp             CCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCS
T ss_pred             CcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCC
Confidence                     0      0  11233   46669999999999999998543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.55  E-value=4.4e-08  Score=72.02  Aligned_cols=43  Identities=12%  Similarity=0.033  Sum_probs=35.1

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      .+.|+.+..++....|.|.+++.+|+|.|+|+|+|.+|+++..
T Consensus       153 ~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          153 ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             ---CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             ccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            4567777777766778889999999999999999999999874

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2.7e-07  Score=61.79  Aligned_cols=60  Identities=12%  Similarity=0.095  Sum_probs=44.7

Q ss_pred             CeEEEEEEecC--CCCcceEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         69 NSYNITWMVSS--YTPLEEFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        69 ~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      +++.|+|..+.  +..|..|.|+|+......      .....+.   |.+++.|.|+|.|.|..|.|.++.
T Consensus        31 ~sv~l~W~~P~~~ng~i~gY~i~y~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~~~  101 (116)
T 2edb_A           31 NCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLY  101 (116)
T ss_dssp             SCEEEEECCCSCTTBCCCEEEEEEEESSTTSEEEEEETTCCEEEECSCCSSSBEEEEEEEEETTEECSCEE
T ss_pred             CEEEEEEcCCCCCCCceeEEEEEEEeCCCCeEEEEeCCCeeEEEeCCCCCCCEEEEEEEEEeCCccCCCCc
Confidence            89999999753  346899999998632211      1123444   555999999999999999998764

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.54  E-value=5.2e-08  Score=65.09  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=32.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.+
T Consensus        72 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V  108 (122)
T 3s35_X           72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV  108 (122)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEE
Confidence            3568999999999999999999999999888766653

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=98.54  E-value=1.8e-06  Score=67.62  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=79.5

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EE-EecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LE-LSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~-v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .....+.|.++.+.-.-.|...|.|..|..... +. .+..|.|..+...  ....+++.|.|..+...++..|.++|+.
T Consensus       147 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~p~~l~~~--~~~~~si~l~W~~p~~~~i~~Y~v~~~~  224 (375)
T 3t1w_A          147 SSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFT--NIGPDTMRVTWAPPPSIDLTNFLVRYSP  224 (375)
T ss_dssp             TTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEE--SCCSSCEEEEEECCSSCCCCEEEEEEEE
T ss_pred             CCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeeeeecCCCCCceeEEE--ecccCEEEEEEcCCCCCCccEEEEEEEe
Confidence            345678899999888888899999998865442 22 2234444433322  2346899999998766788999999987


Q ss_pred             CCCCC-------C-CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         93 IPGNE-------P-SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        93 ~~~~~-------~-~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .....       . ....+.   |.+++.|.|+|.|.|..|.|.+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~  271 (375)
T 3t1w_A          225 VKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR  271 (375)
T ss_dssp             GGGTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CCCCCCcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee
Confidence            65322       1 113444   566999999999999999998764

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=98.54  E-value=1.4e-06  Score=68.21  Aligned_cols=113  Identities=10%  Similarity=-0.007  Sum_probs=80.0

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EEE-ecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LEL-SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v-~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .....+.|.++.+.-.-.+...|.|..|..... +.. ...|.|..+...  ....+++.|+|..+...++..|.++|+.
T Consensus        56 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~p~p~~l~~~--~~~~~si~l~W~~~~~~~i~~Y~v~~~~  133 (375)
T 3t1w_A           56 ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFV--DITDSSIGLRWTPLNSSTIIGYRITVVA  133 (375)
T ss_dssp             TTCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECCCCCCCSCCEEE--CCCSSEEEEECCCCCCTTEEEEEEEEEE
T ss_pred             CCccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcCCCCCCceEEEE--ecCCCeEEEEEECCCCCCceEEEEEEEE
Confidence            345678899999888888889999988755432 222 234444333321  2356899999998766689999999998


Q ss_pred             CCCCCC--------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         93 IPGNEP--------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        93 ~~~~~~--------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .+....        ....+   .|.+++.|.|+|.|.|..|.|.++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~  181 (375)
T 3t1w_A          134 AGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL  181 (375)
T ss_dssp             SSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred             CCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeee
Confidence            654421        11333   46669999999999999999987763

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.54  E-value=2.5e-07  Score=66.82  Aligned_cols=83  Identities=14%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc--eE--EEEEEecCC-CCceeecCCCC---CCCCeEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HR--AYLELSGKP-NPAIFRSHPQG---RLPNSYNITWMV   77 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~--~~--~~~~v~~~P-~p~~~~~~~~~---~~~~~~~L~W~~   77 (152)
                      .+|+.+.......+|.|.+++.+|+|.|+|.|.|..|.  ..  ..+.|...+ .+|.+...+..   .....+.|.|.+
T Consensus        56 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~  135 (211)
T 3tv3_L           56 PDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI  135 (211)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEE
T ss_pred             cCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEe
Confidence            46888877777889999999999999999999999882  22  235554333 34444332211   135789999998


Q ss_pred             cCCC-CcceEEE
Q psy15979         78 SSYT-PLEEFKI   88 (152)
Q Consensus        78 ~~~~-pi~~y~~   88 (152)
                      .+.. |...+.|
T Consensus       136 ~g~~p~~~~v~W  147 (211)
T 3tv3_L          136 SDFYPGAVTVAW  147 (211)
T ss_dssp             EEEBSSCCEEEE
T ss_pred             eeecCCCeEEEE
Confidence            7643 2334444

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=98.54  E-value=2.8e-06  Score=66.23  Aligned_cols=112  Identities=14%  Similarity=0.150  Sum_probs=78.6

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEe-cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS-GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~-~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~   92 (152)
                      .....+.|.++.+.-.-.|.+.|.|..|.... ...+. ..|.|..+..  ......++.|.|..+...++..|.++|+.
T Consensus        55 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~~~p~~l~~--~~~~~~si~l~W~~p~~~~~~~Y~v~~~~  132 (368)
T 1fnf_A           55 ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRF--TNIGPDTMRVTWAPPPSIDLTNFLVRYSP  132 (368)
T ss_dssp             TTCCEEECCCCCTTSCEEEEEEEEETTEECCCEEEEECCCCCCCEEEEE--ESCCSSCEEEEEECCTTCCCSEEEEEEEE
T ss_pred             CCcCEEEECCCCCCCEEEEEEEEEcCCCccCceeeeecCCCcCCceeEE--EEcCCCeEEEEeeCCCCCCCcEEEEEEEE
Confidence            34567888899988888889999999885443 23332 2233333332  12357899999998766789999999998


Q ss_pred             CCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         93 IPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        93 ~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .....        .....+.   |.+++.|.|+|.|.|..|.|.+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~  179 (368)
T 1fnf_A          133 VKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR  179 (368)
T ss_dssp             TTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CCCCCccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE
Confidence            65432        1123444   556999999999999999887653

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.54  E-value=1.8e-07  Score=60.00  Aligned_cols=45  Identities=31%  Similarity=0.572  Sum_probs=36.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      +|..++||.+...+....|.|.+++.+|+|.|+|.|    |.....+.|
T Consensus        47 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l   91 (95)
T 2k1m_A           47 DISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDL   91 (95)
T ss_dssp             EECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEE
T ss_pred             ECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEE
Confidence            456678899988888889999999999999999999    555554444

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.54  E-value=9e-08  Score=80.82  Aligned_cols=50  Identities=24%  Similarity=0.387  Sum_probs=46.6

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.||.+..+++..+|.|.++.++|+|.|+|+|+|.+|++++.+.|.
T Consensus       522 el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l~  571 (573)
T 3uto_A          522 ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN  571 (573)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEEE
Confidence            57788999999999999999999999999999999999999999987775

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=98.53  E-value=3.9e-07  Score=58.84  Aligned_cols=63  Identities=22%  Similarity=0.313  Sum_probs=47.7

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+++.|+|..+. .++..|.++|+......        .....+.   |.+++.|.|+|.|.|..|.|.|....
T Consensus        14 ~~~sv~l~W~~p~-~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~p~~~~   87 (98)
T 3teu_A           14 TDTSITVSWTPPS-ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGT   87 (98)
T ss_dssp             CSSCEEEEEECCS-SCCSEEEEEEEETTSCSCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEEE
T ss_pred             cCCEEEEEEeCCC-CcccEEEEEEEECCCCCceEEEEcCCCcCEEEecCCCCCCEEEEEEEEEeCCCCCCCeEEE
Confidence            4689999999874 68899999999754322        1123444   56699999999999999999886443

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=5.9e-07  Score=60.96  Aligned_cols=68  Identities=12%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             CCCeEEEEEEecCC--CCc----ceEEEEEEECCCCC--C-----CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         67 LPNSYNITWMVSSY--TPL----EEFKIKYRKIPGNE--P-----SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        67 ~~~~~~L~W~~~~~--~pi----~~y~~~~r~~~~~~--~-----~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+++.|.|..+..  ..+    ..|.|+|+......  .     ....+   .|.+++.|+|+|+|.|..|.|.++...
T Consensus        31 s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v  110 (123)
T 2edd_A           31 THDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA  110 (123)
T ss_dssp             ETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTCTTCCCCCEEESSSEEEEESCCTTCEEEEEEEECCSSSCCCCCCCE
T ss_pred             CCCeEEEEecCCCCCcccccCcCceEEEEEEECCCCCccEEEEeCCceEEEecCCCCCCEEEEEEEEeCCCcccCCCCCE
Confidence            56899999996532  223    38999999864321  1     11233   466699999999999999999999876


Q ss_pred             cccc
Q psy15979        131 LIVP  134 (152)
Q Consensus       131 ~~~~  134 (152)
                      .+.+
T Consensus       111 ~~~T  114 (123)
T 2edd_A          111 HATT  114 (123)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            5544

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.53  E-value=1.2e-07  Score=71.32  Aligned_cols=113  Identities=15%  Similarity=0.198  Sum_probs=64.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEE--ecCCCCceeec--CCCCCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLEL--SGKPNPAIFRS--HPQGRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v--~~~P~p~~~~~--~~~~~~~~~~~L~W~~~~   79 (152)
                      +.++.+..   .+.|.|.+++.+|+|.|+|.|.|..+....  .+.|  ..+|.......  .........+.|.|.+.+
T Consensus       146 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g  222 (291)
T 1qz1_A          146 DVRFIVLS---NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADG  222 (291)
T ss_dssp             CTTEEECT---TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEE
T ss_pred             CceEEEcc---CCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEE
Confidence            45565542   347999999999999999999998754322  3333  33332110000  001124678999999876


Q ss_pred             CCCcceEEEEEE--ECCCCC---------CCcceEEec-----CCCeEEEEEEEEcCCCCC
Q psy15979         80 YTPLEEFKIKYR--KIPGNE---------PSPMSNQLT-----GTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        80 ~~pi~~y~~~~r--~~~~~~---------~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g  124 (152)
                      .++. .+.|...  ......         .....+.|.     +.+.|.|  .|.|.+|..
T Consensus       223 ~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~  280 (291)
T 1qz1_A          223 FPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC--IAENKAGEQ  280 (291)
T ss_dssp             ESCC-EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE--EEEETTEEE
T ss_pred             eCCC-cEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEE--EEEeCCCce
Confidence            5443 3554321  111110         001223333     3788988  779999975

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.53  E-value=1.5e-07  Score=71.54  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             cccCCCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.++.+... +....|.|.+++.+|+|.|+|.|.|.+|.....+.|..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  313 (317)
T 2y25_A          262 ALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV  313 (317)
T ss_dssp             EECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            4667788888654 66789999999999999999999999999998877653

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=98.53  E-value=7.1e-07  Score=58.12  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCC-CCC-------CcceEE---ecCCCeEEEEEEEEcCCC
Q psy15979         54 PNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG-NEP-------SPMSNQ---LTGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~-~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~G  122 (152)
                      |.|..+...  ..+.+++.|+|..+. .++..|.+.|+.... ...       ...++.   |.+++.|.|+|.|.|..|
T Consensus         3 p~P~~l~v~--~~t~~Sv~lsW~~p~-~~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~l~gL~P~t~Y~~~V~A~~~~g   79 (98)
T 3tes_A            3 PAPKNLVVS--EVTEDSLRLSWTAPD-AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGH   79 (98)
T ss_dssp             CCCEEEEEE--SCCSSCEEEEEECCT-TSCSEEEEEEEETTBCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCCceEEE--ecCCCeEEEEecCCc-CccceEEEEEEECCCCCceEEEEcCCCcCEEEECCCCCCCEEEEEEEEEeCCc
Confidence            444444332  345789999999865 478899999998753 111       123444   566999999999999999


Q ss_pred             CCCCCC
Q psy15979        123 RGNSTN  128 (152)
Q Consensus       123 ~g~~s~  128 (152)
                      .|+|..
T Consensus        80 ~S~p~~   85 (98)
T 3tes_A           80 RSNPLS   85 (98)
T ss_dssp             EBCCEE
T ss_pred             ccCCEE
Confidence            998864

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.53  E-value=2.7e-07  Score=65.47  Aligned_cols=105  Identities=18%  Similarity=0.229  Sum_probs=62.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEE---EEEec------CCCCceeecCCC---CCCCCeEEEEEEecCCCCcc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY---LELSG------KPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLE   84 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~---~~v~~------~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi~   84 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|.....   +.+..      .+.||.+.....   ......+.|.|.+.+.++ .
T Consensus        65 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p  143 (201)
T 3s97_C           65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV-P  143 (201)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESC-C
T ss_pred             CCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCC-C
Confidence            4679999999999999999999988877652   22221      122333322111   123577899999876543 2


Q ss_pred             eEEEEEEECCCCC------CCcceEEe-----cCCCeEEEEEEEEcCCCCCC
Q psy15979         85 EFKIKYRKIPGNE------PSPMSNQL-----TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        85 ~y~~~~r~~~~~~------~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      .+.| ++....-.      .....+.|     .+.+.|.|  .|.|.+|...
T Consensus       144 ~v~W-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~  192 (201)
T 3s97_C          144 DIRW-RKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC--EAENIRGKDK  192 (201)
T ss_dssp             EEEE-EETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEE--EEEETTEEEE
T ss_pred             ceEE-EeCCCcCCCceeecCCCCEEEEccCChhhCEEEEE--EEEecCCcee
Confidence            3444 33221110      01123333     33789988  6799998763

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.53  E-value=8.1e-08  Score=69.75  Aligned_cols=108  Identities=19%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEecCCCCceeecCCC--CCCCCeEEEEEEe-cCCCCcceEEEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSGKPNPAIFRSHPQ--GRLPNSYNITWMV-SSYTPLEEFKIKYR   91 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~-~~~~pi~~y~~~~r   91 (152)
                      ..+|.|.+++.+|+|.|+|.+.|. |....  .+.|...|.+|.+...+.  ......+.|.|.+ .+.+ ...+.| ++
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P-~~~v~W-~~  147 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYP-EAEVFW-KD  147 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBS-CCEEEE-EC
T ss_pred             eEEEEECCcccccCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccC-CCeEEE-Ec
Confidence            567999999999999999999986 33333  344445555455443221  1235789999998 4443 333443 33


Q ss_pred             ECCCCCCC----------c--------ceEEecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         92 KIPGNEPS----------P--------MSNQLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        92 ~~~~~~~~----------~--------~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ..+.....          .        ......+.+.|.|  .|.|.+|....+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C--~a~n~~g~~~~~~~  201 (222)
T 4i0k_A          148 GQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSC--LVRNPVLQQDAHGS  201 (222)
T ss_dssp             TTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEE--EEEETTTTEEEEEE
T ss_pred             CCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEE--EEECCCCCCceEEE
Confidence            12111000          0        1113345789998  66999997654433

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.52  E-value=3.9e-07  Score=60.97  Aligned_cols=82  Identities=12%  Similarity=0.084  Sum_probs=54.2

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCC--CCc----ceEEEEEEECCCCC-------CCcceE---EecCCCeEEEEEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSY--TPL----EEFKIKYRKIPGNE-------PSPMSN---QLTGTNQYQNRRL  116 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~--~pi----~~y~~~~r~~~~~~-------~~~~~~---~L~~~~~Y~~rV~  116 (152)
                      +|.||..... ...+.+++.|+|..+..  .++    ..|.|.|+......       .....+   .|.+++.|+|+|+
T Consensus         8 pp~~P~~l~~-~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~gL~P~T~Y~f~V~   86 (113)
T 1x5j_A            8 PMMPPVGVQA-SILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVM   86 (113)
T ss_dssp             CCCCCEEEEE-EEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEE
T ss_pred             CCCCCcceEE-EEecCCEEEEEecCCCCccccccCcCceEEEEEEECCCCCeEEEEEecCcCEEEeCCCCCCcEEEEEEE
Confidence            4555543321 12357899999997532  233    38999998732211       111233   4666999999999


Q ss_pred             EEcCCCCCCCCCCcccccc
Q psy15979        117 VRKRFDRGNSTNGGLIVPK  135 (152)
Q Consensus       117 A~N~~G~g~~s~~~~~~~~  135 (152)
                      |.|..|.|.++....+.++
T Consensus        87 A~~~~G~g~~S~~v~~~T~  105 (113)
T 1x5j_A           87 VTKGRRSSTWSMTAHGTTF  105 (113)
T ss_dssp             EECSSCBCCCCCCCCEECC
T ss_pred             EecCCccCCCcccEEeecc
Confidence            9999999999987766543

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=98.52  E-value=2.4e-06  Score=66.62  Aligned_cols=113  Identities=16%  Similarity=0.160  Sum_probs=78.5

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEE-EEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEEC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL-ELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~-~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~   93 (152)
                      .......|.++.+.-.-.+...|.|..|...... .....|.+|..... .....+++.|+|..+.. ++..|.+.|+..
T Consensus       236 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~~~~t~p~~P~~l~~-~~~~~~sv~l~W~~p~~-~i~~Y~v~~~~~  313 (368)
T 1fnf_A          236 HSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEV-VAATPTSLLISWDAPAV-TVRYYRITYGET  313 (368)
T ss_dssp             TTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEEEEECCCCSCEEEEE-EEEETTEEEEEEECCSS-CCSEEEEEEEET
T ss_pred             CCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccccccCCCCCCCeeEE-EecCCCEEEEEeeCCCC-ccceEEEEEEEC
Confidence            3456788889988777778889999988655432 23345555432211 12246899999998654 688999999987


Q ss_pred             CCCCC--------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         94 PGNEP--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        94 ~~~~~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .....        ....+.   |.+++.|.|+|.|.|..|.|.++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~~  360 (368)
T 1fnf_A          314 GGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK  360 (368)
T ss_dssp             TCCSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBCC
T ss_pred             CCCCccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccCc
Confidence            54321        113343   5569999999999999999987753

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=98.52  E-value=5.8e-07  Score=65.14  Aligned_cols=82  Identities=10%  Similarity=0.099  Sum_probs=56.8

Q ss_pred             EecCCCCceeecCCCCCCCCeEEEEEEec---CCCCcceEEEEEEECCCCCCCc-----------ceEE---ecCCCeEE
Q psy15979         50 LSGKPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSP-----------MSNQ---LTGTNQYQ  112 (152)
Q Consensus        50 v~~~P~p~~~~~~~~~~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~~~-----------~~~~---L~~~~~Y~  112 (152)
                      ..+.|.+|.....  .....++.|+|..+   ++.++..|.++|+......+..           ..+.   |.+++.|+
T Consensus         5 ~~~~P~~P~~~~~--~~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   82 (209)
T 2vkw_A            5 QADTPSSPSIDQV--EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA   82 (209)
T ss_dssp             CCCCCCCCEEEEE--EECSSCEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEE
T ss_pred             ccCCCcCCcccEe--eeccCeEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEE
Confidence            3466776654321  11223689999986   3457999999999876544311           2444   56699999


Q ss_pred             EEEEEEcCCCCCCCCCCcccc
Q psy15979        113 NRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus       113 ~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      |||.|.|..|.|.++....+.
T Consensus        83 ~~V~A~n~~G~~~~s~~~~~~  103 (209)
T 2vkw_A           83 VRLAALNGKGLGEISAASEFK  103 (209)
T ss_dssp             EEEEEEETTEECCCCCCEEEE
T ss_pred             EEEEEEcCCcccCCccccccc
Confidence            999999999999988766443

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.51  E-value=8.3e-07  Score=70.15  Aligned_cols=106  Identities=21%  Similarity=0.262  Sum_probs=61.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEE-----EEEe-----cCCCCceeecCCC---CCCCCeEEEEEEecCCCCc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY-----LELS-----GKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPL   83 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-----~~v~-----~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi   83 (152)
                      .+.|.|.+++.+|+|.|+|+|.|..|.....     +.+.     ....|......+.   ......+.|.|.+.+.++ 
T Consensus       156 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~-  234 (384)
T 3kld_A          156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV-  234 (384)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESC-
T ss_pred             CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCC-
Confidence            4579999999999999999999999876531     1111     1111211111111   123678999999876543 


Q ss_pred             ceEEEEEEECCCCC-------CCcceEEe-----cCCCeEEEEEEEEcCCCCCCC
Q psy15979         84 EEFKIKYRKIPGNE-------PSPMSNQL-----TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        84 ~~y~~~~r~~~~~~-------~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ..+.| ++..+...       .....+.|     ++.+.|.|  .|.|..|....
T Consensus       235 p~i~W-~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C--~a~N~~G~~~~  286 (384)
T 3kld_A          235 PTILW-RRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC--VAENSRGKNVA  286 (384)
T ss_dssp             CEEEE-EETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEE--EEEETTEEEEE
T ss_pred             CcEEE-EeCCCccccccceecCCCcEEEECCCChhhCEEEEE--EEEcCCCeEEE
Confidence            23333 33222110       11122333     34889998  78999997543

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=98.51  E-value=2.5e-06  Score=64.26  Aligned_cols=109  Identities=11%  Similarity=0.142  Sum_probs=75.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEecCC-CCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKP-NPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP   94 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~~P-~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~   94 (152)
                      .....|.++.+.-.-.+...|.|..|.... .+.....| .|..+...  ....+++.|.|..+. .++..|.++|+...
T Consensus       159 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~~~~P~~l~~~--~~~~~sv~l~W~~p~-~~i~~Y~v~~~~~~  235 (283)
T 1tdq_A          159 TTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVT--ASSETSISLIWTKAS-GPIDHYRITFTPSS  235 (283)
T ss_dssp             EEEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEE--EECSSCEEEEEECCC-SCCSEEEEEEECSS
T ss_pred             cceEEEecCCCCCEEEEEEEEEeCCCCCcceEEEecCCCCCCCccEEe--EecCCEEEEEEeCCC-CcccEEEEEEEcCC
Confidence            567889999888888889999998885543 23333333 33333321  224688999999764 57889999998765


Q ss_pred             CCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         95 GNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        95 ~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...      .....+.   |.+++.|.|+|.|.|..|.|.++.
T Consensus       236 ~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~  278 (283)
T 1tdq_A          236 GISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLEST  278 (283)
T ss_dssp             SCCEEEEEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCEE
T ss_pred             CCeeEEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCCCccee
Confidence            432      1113344   556999999999999999998763

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=4.2e-07  Score=60.39  Aligned_cols=69  Identities=10%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             CCCCeEEEEEEecC--CCCcceEEEEEEECCCCC---------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCCCcc
Q psy15979         66 RLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE---------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGL  131 (152)
Q Consensus        66 ~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~---------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~  131 (152)
                      ...+++.|.|..+.  ..+|..|.++|+......         .....+   .|.+++.|.|||.|.|..|.|.++....
T Consensus        30 ~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~  109 (121)
T 2dlh_A           30 LSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQ  109 (121)
T ss_dssp             CSSSBCCEEEECCSCCCSCEEEEEEECCSCTTSCTTTSCCCCCSSCSEECCBSCCSSCEEEEEEEEEESSCBCCCCCCEE
T ss_pred             cCCCEEEEEECCCCCCCCcEeEEEEEEEeCCCCCccccEEEecCCceEEEecCCCCCCEEEEEEEEEeCCccCCCCCCEE
Confidence            35689999999863  357889999998754321         111233   4666999999999999999999987665


Q ss_pred             ccc
Q psy15979        132 IVP  134 (152)
Q Consensus       132 ~~~  134 (152)
                      +.+
T Consensus       110 ~~T  112 (121)
T 2dlh_A          110 VIT  112 (121)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            543

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.50  E-value=7e-07  Score=58.76  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=51.0

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~  123 (152)
                      .|.||..... .....+++.|+|..+. .++..|.|.|+......      ....++.   |.+++.|.|+|.|.|..|.
T Consensus         7 ~p~~P~~l~v-~~~~~~sv~lsW~~p~-~~i~~Y~i~y~~~~~~~~~~~~~~~~ts~~l~~L~p~t~Y~~~V~A~~~~g~   84 (105)
T 2cum_A            7 GLEAPRDLEA-KEVTPRTALLTWTEPP-VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSL   84 (105)
T ss_dssp             TCCCCEEEEE-ESCCSSCEEEEEECCS-SCCSEEEEEEECTTSCEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTTBC
T ss_pred             CCCCCCceEE-EeccCCEEEEEEcCCC-CccceEEEEEEeCCCceEEEEECCCccEEEECCCCCCCEEEEEEEEEeCCcc
Confidence            4555543321 1234689999999765 37899999998754321      1123454   5559999999999999999


Q ss_pred             CCCCC
Q psy15979        124 GNSTN  128 (152)
Q Consensus       124 g~~s~  128 (152)
                      |.+..
T Consensus        85 s~~~~   89 (105)
T 2cum_A           85 LPPVS   89 (105)
T ss_dssp             CCCEE
T ss_pred             cCCEE
Confidence            98753

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.50  E-value=2.1e-07  Score=62.73  Aligned_cols=50  Identities=10%  Similarity=0.175  Sum_probs=38.0

Q ss_pred             CCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCC
Q psy15979          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPN   55 (152)
Q Consensus         5 ~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~   55 (152)
                      .++|+.+.. .....+|.|.+++.+|+|.|+|.|.|. |.....+.|.  ++|.
T Consensus        52 ~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           52 KNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             CSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEEECC--
T ss_pred             cCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEEEeCCC
Confidence            456777653 345689999999999999999999999 9888865555  4443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.50  E-value=1.2e-06  Score=62.29  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=60.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EEEe--cCCCCceeecCC-CCCCCCeEEEEEEecCCCCcceEEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS--GKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKIKYR   91 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v~--~~P~p~~~~~~~-~~~~~~~~~L~W~~~~~~pi~~y~~~~r   91 (152)
                      ...+|.|.+++.+|+|.|.|.+.|..+..... ..+.  ..|.+....... .......+.+.|.+.+.++. .+.| ++
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~i~W-~~  154 (218)
T 4frw_A           77 LDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-SVTW-DT  154 (218)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-EEEE-EE
T ss_pred             CeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-eEEE-EE
Confidence            34679999999999999999999987755553 2222  222222211111 12235677888887665443 3333 33


Q ss_pred             ECCCCC-------CC----cceEEecC-----CCeEEEEEEEEcCCCCCC
Q psy15979         92 KIPGNE-------PS----PMSNQLTG-----TNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        92 ~~~~~~-------~~----~~~~~L~~-----~~~Y~~rV~A~N~~G~g~  125 (152)
                      ....-.       ..    ...+.|.+     ++.|.|  .|.|..|..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC--~a~N~~g~~~  202 (218)
T 4frw_A          155 EVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTC--VVSHPGLLQD  202 (218)
T ss_dssp             SSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEE--EEECTTCSSC
T ss_pred             CCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEE--EEEeCCCCeE
Confidence            221100       00    01233433     789999  6689988754

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=1.2e-07  Score=61.46  Aligned_cols=40  Identities=25%  Similarity=0.517  Sum_probs=34.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      +|..+.++.+...+....|.|.+++.+|+|.|+|.|.|..
T Consensus        50 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~   89 (102)
T 2eo1_A           50 KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ   89 (102)
T ss_dssp             ECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTEE
T ss_pred             ECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCCc
Confidence            4566778999887778899999999999999999997643

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.49  E-value=9.8e-07  Score=72.19  Aligned_cols=65  Identities=11%  Similarity=0.201  Sum_probs=46.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC----CCCCCeEEEEEEecCCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ----GRLPNSYNITWMVSSYTP   82 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~----~~~~~~~~L~W~~~~~~p   82 (152)
                      .+.|.|.+++.+| |.|+|.|.|..|.......|.....|..+...+.    ......+.|.|.+.+..|
T Consensus       280 ~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p  348 (523)
T 2rcj_C          280 SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSH  348 (523)
T ss_pred             EEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccC
Confidence            3589999999999 9999999999999877766654333433332221    123678999999976543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.49  E-value=5.6e-08  Score=76.14  Aligned_cols=107  Identities=12%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             CCEeEEEEceeCCCCCE-EEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEE-
Q psy15979         15 GSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRK-   92 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~-   92 (152)
                      ...++|.|.+++.+|+| .|+|+|.|..|.....+.|.....|..+...+  .....+.|.|.+.+.++ ..+.|. +. 
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~--~~g~~v~l~C~~~g~P~-p~i~W~-~~g  284 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTA--VEMHHWCIPFSVDGQPA-PSLRWL-FNG  284 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCC--EESSSEEEEEEEEEESC-CEEEEE-ETT
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccC--ccCceEEEEEEeeecCC-CcEEEE-eCC
Confidence            35778999999999999 99999999999998877766543332222211  23578899999877633 345543 22 


Q ss_pred             --CCCCCC--------------CcceEEec-----CCCeEEEEEEEEcCCCCCCCC
Q psy15979         93 --IPGNEP--------------SPMSNQLT-----GTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        93 --~~~~~~--------------~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                        ......              ...+..|.     +.+.|.|  .|.|.+|....+
T Consensus       285 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~N~~G~~~~~  338 (347)
T 2ifg_A          285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL--LAANPFGQASAS  338 (347)
T ss_dssp             EECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEE--EEEETTEEEEEE
T ss_pred             EECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEE--EEecCCCceeeE
Confidence              111100              01113333     3788988  789999976433

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.48  E-value=1.1e-07  Score=69.68  Aligned_cols=76  Identities=13%  Similarity=0.267  Sum_probs=42.9

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCCCceeec-CCC--CCCCCeEEEEEEecCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSSY   80 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~-~~~--~~~~~~~~L~W~~~~~   80 (152)
                      +|+.+...+...+|.|.+++.+|+|.|.|.|.|..|....   .+.|...+.+|.+.. .+.  ......+.|.|.+.+.
T Consensus        82 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~  161 (233)
T 3bqu_C           82 SRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  161 (233)
T ss_dssp             TTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccc
Confidence            5665544445568999999999999999999998764321   344544443444432 111  1125689999998764


Q ss_pred             CC
Q psy15979         81 TP   82 (152)
Q Consensus        81 ~p   82 (152)
                      .|
T Consensus       162 ~p  163 (233)
T 3bqu_C          162 YP  163 (233)
T ss_dssp             BS
T ss_pred             cC
Confidence            33

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.48  E-value=5.1e-07  Score=68.82  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      +|+.+.  ......+|.|.+++.+|+|.|.|.+.|.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           66 GRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             TTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSS
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            578776  3456678999999999999999999997

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.4e-07  Score=64.20  Aligned_cols=46  Identities=22%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             CCcEEEEEc--C----CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETR--G----SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~--~----~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.++++...  .    ....|.|.+++.+|+|.|+|.|.|..|.+++...|.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~  113 (118)
T 2edn_A           62 GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID  113 (118)
T ss_dssp             TSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCE
T ss_pred             ccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEE
Confidence            456666421  1    257899999999999999999999999988876654

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=98.47  E-value=6.8e-06  Score=62.24  Aligned_cols=110  Identities=13%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EEEe--cCCCCc-eeecCCCCCCCCeEEEEEEecCCCCcceEEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS--GKPNPA-IFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKY   90 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v~--~~P~p~-~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~   90 (152)
                      .....+.|.++.+.-.-.+...|.|..|..... ..+.  ..|.+| .+...  ....+++.|.|..+. .++..|.++|
T Consensus        71 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~~~P~~l~~~--~~~~~sv~l~W~~p~-~~~~~Y~v~~  147 (290)
T 3r8q_A           71 PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVT--DATETTITISWRTKT-ETITGFQVDA  147 (290)
T ss_dssp             TTCCEEEECSCCSSCEEEEEEEEEETTEECCCEEEEEECCCCCCCCEEEEEE--EECSSCEEEEEECCS-CCCCEEEEEE
T ss_pred             CCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcceeEecCCCCCCCceeEEE--EcCCCeEEEEEeCCC-CcccEEEEEE
Confidence            445678899998888788889999998865442 2222  123333 22221  235689999999864 4788999999


Q ss_pred             EECCCCCC-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         91 RKIPGNEP-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        91 r~~~~~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      +.......       ...++.   |.+++.|.|+|.|.|..|.|.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~  194 (290)
T 3r8q_A          148 VPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV  194 (290)
T ss_dssp             EESSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             EECCCCcceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE
Confidence            88654431       123444   55699999999999999998764

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.47  E-value=1.9e-06  Score=71.51  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=50.6

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce-EEE--EEEecCCCCceeecCCC--CCCCCeEEEEEEecCCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-RAY--LELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYT   81 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~--~~v~~~P~p~~~~~~~~--~~~~~~~~L~W~~~~~~   81 (152)
                      .|+.+..   .++|.|.+++.+|+|.|+|++.|..|.. ...  +.|..+|.+|.+.....  ......+.|.|.+.+..
T Consensus       424 ~r~~~~~---~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~  500 (581)
T 3o3u_N          424 SVARVLP---NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSY  500 (581)
T ss_dssp             GTSEECT---TSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEB
T ss_pred             CcEEEcC---CceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCC
Confidence            3555542   2379999999999999999999999987 444  44555665555443221  11234556789876632


Q ss_pred             CcceEEE
Q psy15979         82 PLEEFKI   88 (152)
Q Consensus        82 pi~~y~~   88 (152)
                      |...+.|
T Consensus       501 P~~~i~W  507 (581)
T 3o3u_N          501 PAGTLSW  507 (581)
T ss_dssp             SCCEEEE
T ss_pred             CCCeEEE
Confidence            3334444

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.47  E-value=1.1e-06  Score=63.72  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCce------EEEEEEecC-CCCceee-cCC--CCCCCCeEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELSGK-PNPAIFR-SHP--QGRLPNSYNI   73 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~~~v~~~-P~p~~~~-~~~--~~~~~~~~~L   73 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|+|.|.|..|..      ...+.|... +.+|.+. ..+  .......+.|
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  144 (219)
T 1c1e_H           65 KGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTL  144 (219)
T ss_dssp             CSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEE
Confidence            468887643  346789999999999999999999987432      123555542 3333332 221  1224678999


Q ss_pred             EEEecC
Q psy15979         74 TWMVSS   79 (152)
Q Consensus        74 ~W~~~~   79 (152)
                      .|.+.+
T Consensus       145 ~C~~~g  150 (219)
T 1c1e_H          145 GCLVKG  150 (219)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            999877

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.47  E-value=2.1e-07  Score=64.14  Aligned_cols=52  Identities=25%  Similarity=0.305  Sum_probs=36.7

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE------EEEEEecCCCC
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR------AYLELSGKPNP   56 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~------~~~~v~~~P~p   56 (152)
                      .++||.+..++...+|.|.+++.+|+|.|.|.|.|..|...      +.+.|.+.|.+
T Consensus        64 ~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~~  121 (133)
T 3khq_A           64 EEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTL  121 (133)
T ss_dssp             TTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC-----
T ss_pred             eCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEecccc
Confidence            46799888777788999999999999999999999987322      24566665544

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.46  E-value=3.8e-07  Score=61.96  Aligned_cols=62  Identities=11%  Similarity=0.103  Sum_probs=45.8

Q ss_pred             CeEEEEEEecC--CCCcceEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         69 NSYNITWMVSS--YTPLEEFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        69 ~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      +++.|+|..+.  +.+|..|.|+|+......      .....+.   |.+++.|.|+|.|.|..|.|.++...
T Consensus        41 ~sv~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~  113 (126)
T 1x5i_A           41 TSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYES  113 (126)
T ss_dssp             TEEEEEEECCSCTTBCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCC
T ss_pred             CEEEEEEcCCCCCCCCEeEEEEEEEcCCCCceEEEeCCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeE
Confidence            89999999863  357899999998421110      1123444   55699999999999999999988644

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.46  E-value=7.2e-08  Score=69.19  Aligned_cols=103  Identities=14%  Similarity=0.077  Sum_probs=57.6

Q ss_pred             EEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecCCCCceeecCC-CCCCCCeEEEEEEe-cCCCCcceEEEEEEEC-
Q psy15979         20 LMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRSHP-QGRLPNSYNITWMV-SSYTPLEEFKIKYRKI-   93 (152)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~P~p~~~~~~~-~~~~~~~~~L~W~~-~~~~pi~~y~~~~r~~-   93 (152)
                      |.|.+++.+|+|.|+|.|.|..|...   ..+.|...|.+....... .......+.|.|.+ .+.+ ...+.|. +.. 
T Consensus        74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~v~W~-~~~~  151 (212)
T 2v9r_A           74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHP-EPTISWK-KDGS  151 (212)
T ss_dssp             CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEES-CCEEEEE-ETTE
T ss_pred             EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCC-CCEEEEE-ECCc
Confidence            44567799999999999999999763   244444333211110000 01235788999987 4443 3345543 221 


Q ss_pred             --CCCCC----CcceEEec-----CCCeEEEEEEEEcCCCCCCC
Q psy15979         94 --PGNEP----SPMSNQLT-----GTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        94 --~~~~~----~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~~  126 (152)
                        .....    ....+.|.     +.+.|.|  .|.|.+|....
T Consensus       152 ~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~g~~~s  193 (212)
T 2v9r_A          152 PLDDKDERITIRGGKLMITYTRKSDAGKYVC--VGTNMVGERES  193 (212)
T ss_dssp             EECTTSTTEEEETTEEEESSCCGGGCEEEEE--EEEETTEEEEC
T ss_pred             cCCCCcceEEccCCeEEEeeCCHhhCeeEEE--EEecccCceec
Confidence              11110    01233333     3788988  77999997644

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.46  E-value=1.5e-07  Score=61.95  Aligned_cols=40  Identities=23%  Similarity=0.433  Sum_probs=33.2

Q ss_pred             cccCC-CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          2 RLETT-ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         2 ~l~~~-~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      +|..+ .||.+..++....|.|.+++.+|+|.|+|.|.|..
T Consensus        55 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~   95 (104)
T 1pd6_A           55 EIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEK   95 (104)
T ss_dssp             EECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTEE
T ss_pred             ECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECCCc
Confidence            35555 78888877778899999999999999999995533

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.46  E-value=4e-07  Score=61.32  Aligned_cols=54  Identities=22%  Similarity=0.315  Sum_probs=39.9

Q ss_pred             CcccCCC----------cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCC
Q psy15979          1 MRLETTE----------RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN   55 (152)
Q Consensus         1 ~~l~~~~----------r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~   55 (152)
                      ++|+.++          ||.+..++..+.|+|.+++.+|+|.|+|...+.. ...+.+.|..+|.
T Consensus        45 ~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~~~-~ssA~L~V~~~p~  108 (112)
T 2e6q_A           45 EELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV-QDSAALTIQESSG  108 (112)
T ss_dssp             CBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETTE-EEEEEEEEECSSC
T ss_pred             EECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEECCe-eEEEEEEEeCCCc
Confidence            3576766          9999888888999999999999999987544433 2344566655553

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.46  E-value=6.3e-07  Score=77.13  Aligned_cols=107  Identities=17%  Similarity=0.198  Sum_probs=65.8

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceEEEEEEECCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~   95 (152)
                      ++|.|.+++.+|+|.|+|.|.|..|.....+.|.....|.......  .......+.|.|.+.+.+ ...+.| ++....
T Consensus       306 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p-~~~v~W-~k~g~~  383 (816)
T 3dmk_A          306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP-IKTVSW-MKDGKA  383 (816)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEEC-CCEEEE-EETTEE
T ss_pred             ceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccC-CCEEEE-EECCEE
Confidence            4899999999999999999999999887766655432221111111  112467899999987653 334444 332110


Q ss_pred             CCCCcceEEe-----cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         96 NEPSPMSNQL-----TGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        96 ~~~~~~~~~L-----~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      -......+.|     .+.+.|.|  .|.|..|....+.
T Consensus       384 ~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~~~  419 (816)
T 3dmk_A          384 IGHSESVLRIESVKKEDKGMYQC--FVRNDRESAEASA  419 (816)
T ss_dssp             CSCCSSEEEESSCCGGGCEEEEE--EEECSSCEEEECC
T ss_pred             CCCCCCEEEEcCCCHHHCEEEEE--EEECCCCcEEEEE
Confidence            0111223333     34788888  6689888655443

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.45  E-value=5.3e-06  Score=60.41  Aligned_cols=76  Identities=14%  Similarity=0.234  Sum_probs=49.4

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCC-----CceEEEEEEec-CCCCceee-cCC-CCCCCCeEEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM-----GKHRAYLELSG-KPNPAIFR-SHP-QGRLPNSYNITW   75 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~-----G~~~~~~~v~~-~P~p~~~~-~~~-~~~~~~~~~L~W   75 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..     |.. ..+.|.. .+.+|.+. ..+ .......+.|.|
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~-~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C  145 (221)
T 3m8o_H           67 RGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQG-TLVTVSSASPTSPKVFPLSLCSTQPDGNVVIAC  145 (221)
T ss_dssp             TTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCC-EEEEECSCCCBCCEEEEEECCSCCCTTEEEEEE
T ss_pred             cccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCC-EEEEEecCCCCCCeEEEecCcccccCCCEEEEE
Confidence            378888643  456789999999999999999999963     222 2455542 23333332 111 113467899999


Q ss_pred             EecCCCC
Q psy15979         76 MVSSYTP   82 (152)
Q Consensus        76 ~~~~~~p   82 (152)
                      .+.+..|
T Consensus       146 ~~~~~~P  152 (221)
T 3m8o_H          146 LVQGFFP  152 (221)
T ss_dssp             EEEEEBS
T ss_pred             EEEeeEC
Confidence            9876333

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.45  E-value=1.3e-06  Score=61.53  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN   96 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~   96 (152)
                      ...|.|.  +.+|+|.|+|.|.|.. .....+.|..+|................+.|.|.+.+.++...+.|. +.....
T Consensus        50 ~~~l~i~--~~~d~G~Y~C~~~n~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~-~~~~~~  125 (184)
T 3b5h_A           50 KTEFKVD--SDDQWGEYSCVFLPEP-MGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY-KITDSE  125 (184)
T ss_dssp             EEEEEEC--GGGCCEEEEEEEESTT-SCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEE-ECCSSS
T ss_pred             cEEEEEe--chhhCeEEEEEEECCc-CcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEE-EcCCCC
Confidence            4466666  6899999999999943 35556777665532111100011236789999998876634455543 311111


Q ss_pred             C-----CC-c----------ceE-----E-ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         97 E-----PS-P----------MSN-----Q-LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        97 ~-----~~-~----------~~~-----~-L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .     .. .          ..+     . ..+.+.|.|  .|.|.+|....+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C--~a~N~~g~~~~~  176 (184)
T 3b5h_A          126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRC--NGTSSKGSDQAI  176 (184)
T ss_dssp             CEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEE--EEEETTEEEEEE
T ss_pred             CEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEE--EEEeCCCcceEE
Confidence            0     00 0          012     2 245788988  779999976543

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.45  E-value=2.7e-07  Score=65.30  Aligned_cols=50  Identities=22%  Similarity=0.385  Sum_probs=43.1

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCC-CCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.++.+...+....|.|.+++. +|+|.|+|.|.|.+|.....+.|.
T Consensus       143 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  193 (197)
T 3lcy_A          143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE  193 (197)
T ss_dssp             ECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEE
T ss_pred             ECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEE
Confidence            45667888888877778999999995 899999999999999998876664

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.44  E-value=9.2e-07  Score=70.86  Aligned_cols=109  Identities=10%  Similarity=0.004  Sum_probs=64.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceE----------EEEEEecC-CCCceeecCCCCCCCCeEEEEEEecCCCC--
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR----------AYLELSGK-PNPAIFRSHPQGRLPNSYNITWMVSSYTP--   82 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~----------~~~~v~~~-P~p~~~~~~~~~~~~~~~~L~W~~~~~~p--   82 (152)
                      ..+.|.|.++..+|+|.|+|+|.|..|...          ..+.+... +.+|.+...........+.|.|.+.+..|  
T Consensus       140 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~  219 (450)
T 1z7z_I          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS  219 (450)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGG
T ss_pred             cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCC
Confidence            456899999999999999999999988532          22334333 33444422111224688999999987645  


Q ss_pred             cceEEEEEEECCCCC-C------Cc--c--eE--EecCCCeEEEEEEEEcCCCCCCC
Q psy15979         83 LEEFKIKYRKIPGNE-P------SP--M--SN--QLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        83 i~~y~~~~r~~~~~~-~------~~--~--~~--~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ...+.|  ...+... .      ..  .  ..  ...+.+.|.|...|.|..|....
T Consensus       220 ~~~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~  274 (450)
T 1z7z_I          220 EAQVHL--ALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET  274 (450)
T ss_dssp             GCEEEE--EETTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             ceEEEE--eCCCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEE
Confidence            333433  2221110 0      00  1  11  23447745555588999886543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.44  E-value=1.4e-07  Score=60.62  Aligned_cols=35  Identities=34%  Similarity=0.581  Sum_probs=31.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        64 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   98 (100)
T 3caf_A           64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   98 (100)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEE
Confidence            45899999999999999999999999988877664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.44  E-value=4.4e-07  Score=71.82  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=38.1

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYT   81 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~   81 (152)
                      .|+.+ .+   ++|.|.+|+.+|+|.|+|+|+|..|.++..+.|.+.+.+         ..+..+.|.|.+.+.+
T Consensus       294 ~r~~~-~~---~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~---------~~g~~~~l~C~~~g~P  355 (361)
T 2xot_A          294 GSVSV-RN---GDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT---------LHGHHDTLNAAADPWS  355 (361)
T ss_dssp             SSEEE-ET---TEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESSC---------CC--------------
T ss_pred             CceEe-ec---CeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEeee---------ccCCceEEEEEeCCCC
Confidence            47777 33   479999999999999999999999999998777764422         1234677888877654

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.43  E-value=2.1e-07  Score=59.75  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=30.7

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus        62 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   95 (98)
T 1gl4_B           62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH   95 (98)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CEEEEeCCChhhCEEEEEEecCCCCccccEEEEE
Confidence            4799999999999999999999999988876654

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.43  E-value=1.5e-06  Score=63.26  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=49.9

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCce-----EEEEEEecC-CCCceee-cCC--CCCCCCeEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSGK-PNPAIFR-SHP--QGRLPNSYNIT   74 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~~~v~~~-P~p~~~~-~~~--~~~~~~~~~L~   74 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|.|.+.|..|..     ...+.|... +.+|.+. ..+  .......+.|.
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  146 (220)
T 1pz5_B           67 KGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLG  146 (220)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEE
T ss_pred             CCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEE
Confidence            368887642  345689999999999999999999986532     234555532 3334332 221  12246789999


Q ss_pred             EEecCC
Q psy15979         75 WMVSSY   80 (152)
Q Consensus        75 W~~~~~   80 (152)
                      |.+.+.
T Consensus       147 C~~~g~  152 (220)
T 1pz5_B          147 CLVKGY  152 (220)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998765

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.42  E-value=2e-06  Score=56.89  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=51.4

Q ss_pred             cCCCCceeecCC-CCCCCCeEEEEEEecC-----CCCcceEEEEEEECCCCCCC------cceEE---ecCCCeEEEEEE
Q psy15979         52 GKPNPAIFRSHP-QGRLPNSYNITWMVSS-----YTPLEEFKIKYRKIPGNEPS------PMSNQ---LTGTNQYQNRRL  116 (152)
Q Consensus        52 ~~P~p~~~~~~~-~~~~~~~~~L~W~~~~-----~~pi~~y~~~~r~~~~~~~~------~~~~~---L~~~~~Y~~rV~  116 (152)
                      .+|.||...... ......++.|+|..+.     ...++.|.|+|+......+.      ..++.   |.+++.|+|||+
T Consensus         6 vkp~pP~~l~v~~~~~~~~~l~lsW~~P~~w~~~~~~~l~Y~v~y~~~~~~~w~~~~~~~~~~~~l~~L~p~t~Y~~~VR   85 (109)
T 1uc6_A            6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVA   85 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEESSCSEEEETTCCSSSCEEEEEE
T ss_pred             EecCCCcceEEEEcCCCCCEEEEEECCCCCccCCCcEEEEEEEEEEECCCCCcEEEecccCCEEEEeCCCCCCEEEEEEE
Confidence            467777654321 1223578999999764     24578999999987654321      23444   445999999999


Q ss_pred             EEcCCCCCCCCC
Q psy15979        117 VRKRFDRGNSTN  128 (152)
Q Consensus       117 A~N~~G~g~~s~  128 (152)
                      |+|. |.|..|+
T Consensus        86 a~~~-g~g~wS~   96 (109)
T 1uc6_A           86 AKDN-EIGTWSD   96 (109)
T ss_dssp             CCBS-SSCCCCC
T ss_pred             EEeC-CCCCcCc
Confidence            9996 8766554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.42  E-value=6.5e-07  Score=66.72  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE---EEEEEecCCCCceeec-CCC--CCCCCeEEEEEEecC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS   79 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~~~v~~~P~p~~~~~-~~~--~~~~~~~~L~W~~~~   79 (152)
                      .+|+.+...+...+|.|.+++.+|+|.|+|.|.|..+...   ..+.|...+.+|.+.. .+.  ......+.|.|.+.+
T Consensus        97 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  176 (252)
T 3bkj_L           97 PDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  176 (252)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEee
Confidence            4688887667778999999999999999999999876432   2455555444444332 111  112468999999876


Q ss_pred             CCC
Q psy15979         80 YTP   82 (152)
Q Consensus        80 ~~p   82 (152)
                      ..|
T Consensus       177 ~~p  179 (252)
T 3bkj_L          177 FYP  179 (252)
T ss_dssp             EBS
T ss_pred             EeC
Confidence            433

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.42  E-value=4.6e-07  Score=60.36  Aligned_cols=64  Identities=14%  Similarity=0.254  Sum_probs=48.2

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+++.|+|..+.  +..|..|.++|+......        .....+   .|.+++.|.|||.|.|..|.|.++...
T Consensus        30 ~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           30 LDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             CSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCEEEEEEcCCCCCCCcEEEEEEEEEECCCCCceEEEEeCCCceEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence            4689999999753  346889999999875322        111333   466699999999999999999887654

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=98.42  E-value=2.3e-06  Score=71.08  Aligned_cols=115  Identities=10%  Similarity=0.094  Sum_probs=75.6

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe----cCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS----GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYR   91 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~----~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r   91 (152)
                      ..+.|........-.+.|.|.|.+|...+.+.+.    .+|.||...... .....++.|+|..+.  ...+..|.++|+
T Consensus       347 ~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S~~~~~~~~~v~P~PP~nl~v~-~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr  425 (488)
T 2q7n_A          347 YRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVK-DINSTVVTFSWYLPGNFTKINLLCQIEIC  425 (488)
T ss_dssp             EEEEEECCSSCCCCEEEEEEEETTEEEEEEEECCGGGTBCCCCCEEEEEE-ECSTTCEEEEEEEEEECSSSEEEEEEEEB
T ss_pred             EEEEEcCCCCccEEEEEEEEEeCCCCccceEEEEecCCCCCCCCeEEEEE-ecCCCEEEEEEeCCCCCCCcceEEEEEEE
Confidence            3455543333355677899999999966543332    467777643211 124678999999863  346789999999


Q ss_pred             ECCCCCCC---------cceE--E---ecCCCeEEEEEEEEcCCCC---CCCCCCccccc
Q psy15979         92 KIPGNEPS---------PMSN--Q---LTGTNQYQNRRLVRKRFDR---GNSTNGGLIVP  134 (152)
Q Consensus        92 ~~~~~~~~---------~~~~--~---L~~~~~Y~~rV~A~N~~G~---g~~s~~~~~~~  134 (152)
                      ..+...+.         ...+  .   |.+++.|+|||+|+| .|.   |+.|....+.+
T Consensus       426 ~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T  484 (488)
T 2q7n_A          426 KANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLT  484 (488)
T ss_dssp             CTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCC
T ss_pred             ECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEEC
Confidence            87543210         1123  4   455999999999999 776   67777665543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.41  E-value=1.2e-06  Score=63.32  Aligned_cols=74  Identities=18%  Similarity=0.286  Sum_probs=49.0

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCC--CceEEEEEEec-CCCCceee-cCC--CCCCCCeEEEEEEe
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM--GKHRAYLELSG-KPNPAIFR-SHP--QGRLPNSYNITWMV   77 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~--G~~~~~~~v~~-~P~p~~~~-~~~--~~~~~~~~~L~W~~   77 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|.|.|.|..  |.. ..+.|.. .|.+|.+. ..+  .......+.|.|.+
T Consensus        64 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~-~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  142 (210)
T 3d9a_H           64 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQG-TLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLV  142 (210)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCC-EEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEE
T ss_pred             CceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccc-eEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEE
Confidence            468888642  345689999999999999999999964  322 3455543 33444332 221  11245789999998


Q ss_pred             cCC
Q psy15979         78 SSY   80 (152)
Q Consensus        78 ~~~   80 (152)
                      .+.
T Consensus       143 ~g~  145 (210)
T 3d9a_H          143 KGY  145 (210)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            765

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.41  E-value=2.5e-06  Score=65.32  Aligned_cols=116  Identities=20%  Similarity=0.217  Sum_probs=66.0

Q ss_pred             CCcEEEE-EcCCEeEEEEceeCCCCCEEEEEE-EEcCCCceEEEEEEe--cCCCCceeecCC-C----CCCCCeEEEEEE
Q psy15979          6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELS--GKPNPAIFRSHP-Q----GRLPNSYNITWM   76 (152)
Q Consensus         6 ~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~-A~N~~G~~~~~~~v~--~~P~p~~~~~~~-~----~~~~~~~~L~W~   76 (152)
                      .+|+.+. ......+|.|.+++.+|+|.|+|. +.|..|.....+.|.  .+|......... .    ....+.+.|.|.
T Consensus        79 ~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~  158 (331)
T 3u83_A           79 RERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCT  158 (331)
T ss_dssp             TTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEE
T ss_pred             CCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEE
Confidence            4666664 233467799999999999999997 777788777765554  444321111111 0    111267999997


Q ss_pred             -ecCCCCcceEEEEEEECCCCC--------CCc----ceEE-----ecCCCeEEEEEEEEcCCCCCC
Q psy15979         77 -VSSYTPLEEFKIKYRKIPGNE--------PSP----MSNQ-----LTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        77 -~~~~~pi~~y~~~~r~~~~~~--------~~~----~~~~-----L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                       ..+.+ ...+.| ++......        ...    ..+.     ..+.+.|.|  .|.|..|...
T Consensus       159 ~~~~~p-~~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~~~~~  221 (331)
T 3u83_A          159 SANGKP-PSVVSW-ETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLAC--IVNYHMDRFK  221 (331)
T ss_dssp             EEEEBS-CCEEEE-EESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEE--EEEETTEEEE
T ss_pred             ecCCcC-CceEEE-EcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEE--EEecCCCcce
Confidence             44443 334444 33211100        111    1122     234899998  5688887643

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.41  E-value=4.9e-07  Score=70.01  Aligned_cols=102  Identities=18%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCc--eeecC--CCCCCCCeEEEEEEec----CCCCcceEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA--IFRSH--PQGRLPNSYNITWMVS----SYTPLEEFK   87 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~--~~~~~--~~~~~~~~~~L~W~~~----~~~pi~~y~   87 (152)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|.  .+|...  .....  ........+.|.|...    ...|...+.
T Consensus        79 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~  158 (349)
T 4dep_C           79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTIT  158 (349)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEE
T ss_pred             CEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEE
Confidence            4799999999999999999999999888765554  333211  00000  0112357789999741    113334444


Q ss_pred             EEEEE---CCCCC---CCcceEE-----ecCCCeEEEEEEEEcCCC
Q psy15979         88 IKYRK---IPGNE---PSPMSNQ-----LTGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        88 ~~~r~---~~~~~---~~~~~~~-----L~~~~~Y~~rV~A~N~~G  122 (152)
                      | |+.   .....   .....+.     ..+.+.|.|  .|.|.+|
T Consensus       159 W-~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~~  201 (349)
T 4dep_C          159 W-YMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTC--VVTYPEN  201 (349)
T ss_dssp             E-EETTEECCSCSSEEEETTEEEEESCCGGGCEEEEE--EEEEEET
T ss_pred             E-eeCCEECCCccceeecCCEEEEeeeeecCCcEEEE--EEEEeeC
Confidence            4 332   11100   0012233     334889998  5688773

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=98.40  E-value=3.2e-06  Score=72.31  Aligned_cols=114  Identities=11%  Similarity=0.142  Sum_probs=74.7

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCce-EE----EEEEe---cCCCCceeec-CCCCCCCC---eEEEEEEec--CCC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKH-RA----YLELS---GKPNPAIFRS-HPQGRLPN---SYNITWMVS--SYT   81 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~----~~~v~---~~P~p~~~~~-~~~~~~~~---~~~L~W~~~--~~~   81 (152)
                      ....+.|.++.+.-.-.|.+.|.|..|.. ..    .+...   .+|.+|.... .......+   ++.|.|..+  .+.
T Consensus       221 ~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g  300 (680)
T 1zlg_A          221 TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI  300 (680)
T ss_pred             CCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEEEEEecCCCCCCC
Confidence            34568899998888888899999999932 11    12221   2344443221 11111345   999999964  346


Q ss_pred             CcceEEEEEEEC-CC---C---C------CCc-ceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         82 PLEEFKIKYRKI-PG---N---E------PSP-MSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        82 pi~~y~~~~r~~-~~---~---~------~~~-~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      +|..|.|+|+.. ..   .   .      ... ..+.   |.+++.|+|+|.|.|..|.|.++..
T Consensus       301 ~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~  365 (680)
T 1zlg_A          301 PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSA  365 (680)
T ss_pred             ceeEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCC
Confidence            899999999832 11   0   1      111 2343   5569999999999999999987765

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.40  E-value=3.8e-07  Score=67.41  Aligned_cols=102  Identities=9%  Similarity=0.004  Sum_probs=63.9

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCC-CCCCCeEEEEEEecCCCCcceEEEEEEECCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~-~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~   95 (152)
                      ...|.|.+++.+|+|.|+|.|.|..++....+.|...|  ........ ......+.|.|.+....|...+.|. +. +.
T Consensus        47 ~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~--~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~-~~-g~  122 (262)
T 3rjd_A           47 TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGW--LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY-RN-GK  122 (262)
T ss_dssp             SSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSS--EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEE-ET-TE
T ss_pred             CCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccc--eEecCCCeEEecCCeEEEEEEccCCCCCceEEEE-EC-Cc
Confidence            46799999999999999999999999887777776443  22111111 1246789999998554454445543 21 11


Q ss_pred             CC---CCcceEE-----ecCCCeEEEEEEEEcCCCCC
Q psy15979         96 NE---PSPMSNQ-----LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        96 ~~---~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..   .....+.     ..+.+.|.|  .|.|..|..
T Consensus       123 ~~~~~~~~~~l~i~~~~~~d~G~Y~C--~~~n~~~~~  157 (262)
T 3rjd_A          123 AFKFFHWNSNLTILKTNISHNGTYHC--SGMGKHRYT  157 (262)
T ss_dssp             EEEEEEECCCEEESSCCGGGCEEEEE--EEESSSEEE
T ss_pred             cccccCCCCeEEEEECChhhCEEEEE--EEeCCCCcc
Confidence            00   0012223     334788988  568887543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.40  E-value=2.5e-07  Score=70.88  Aligned_cols=41  Identities=29%  Similarity=0.380  Sum_probs=34.4

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCce
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI   58 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~   58 (152)
                      +.|.|.+++.+|+|.|+|.|.|.+|.+++++.|.+.-.||+
T Consensus       268 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~  308 (313)
T 4fqp_A          268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPH  308 (313)
T ss_dssp             TEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC--
T ss_pred             CEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCC
Confidence            47999999999999999999999999999877776544543

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=98.40  E-value=9e-07  Score=73.45  Aligned_cols=104  Identities=24%  Similarity=0.212  Sum_probs=69.2

Q ss_pred             eeCCCCCEEEEEEEEcCCCceEE-EEEE--e--cCCCCceeecC-CCCCCCCeEEEEEEecC--CCCcceEEEEEEECCC
Q psy15979         24 KVVASDFGNYSCEATNPMGKHRA-YLEL--S--GKPNPAIFRSH-PQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPG   95 (152)
Q Consensus        24 ~v~~~D~G~YtC~A~N~~G~~~~-~~~v--~--~~P~p~~~~~~-~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~   95 (152)
                      ++.....-.|.|.|.|.+|.... .+.+  .  .+|.||..... .......++.|+|..+.  ..++..|.++|+....
T Consensus       164 ~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~~~~  243 (589)
T 3l5h_A          164 STVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDA  243 (589)
T ss_dssp             CCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEETTC
T ss_pred             CCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEECCCCC
Confidence            34444455677999999998643 2222  2  25666643321 12335689999999753  3578899999998764


Q ss_pred             CCCC----------cceEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         96 NEPS----------PMSNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        96 ~~~~----------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..+.          ...+.   |.+++.|+|||.|.|..|.|.++
T Consensus       244 ~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S  288 (589)
T 3l5h_A          244 STWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS  288 (589)
T ss_dssp             SCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCC
T ss_pred             CCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccC
Confidence            3311          13343   66699999999999999987764

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=98.40  E-value=2e-06  Score=62.35  Aligned_cols=89  Identities=12%  Similarity=0.092  Sum_probs=54.1

Q ss_pred             EEcCCCceEEEEEEe---cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------CcceEE-
Q psy15979         37 ATNPMGKHRAYLELS---GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------SPMSNQ-  104 (152)
Q Consensus        37 A~N~~G~~~~~~~v~---~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~~-  104 (152)
                      +.|..|.....+...   +.|.|..+...  ....+++.|+|..+...++..|.++|+.......        ....+. 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~P~P~~l~~~--~~~~~sv~lsW~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i   81 (203)
T 2gee_A            4 SHHHHHHSSGLVPRGSHMEVPQPTDLSFV--DITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTV   81 (203)
T ss_dssp             ------------CCCSSSCCCCCEEEEEE--CCTTTCEEEEEECCSSSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEE
T ss_pred             cccccccccceeccCccccCcCCCccEEE--ecCCCEEEEEecCCCCCCccEEEEEEEECCCCCCceeEEcCCCccEEEe
Confidence            445566555543322   45645444332  2356899999998776688999999998764421        123343 


Q ss_pred             --ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979        105 --LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       105 --L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                        |.+++.|.|+|.|.|..|.|.+.
T Consensus        82 ~~L~p~t~Y~~~V~a~~~~g~s~~~  106 (203)
T 2gee_A           82 TGLEPGIDYDISVYTVKNGGESTPT  106 (203)
T ss_dssp             CSCCTTCEEEEEEEEESSSCBCCCE
T ss_pred             CCCCCCCEEEEEEEEEeCCCccccE
Confidence              56699999999999999988765

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.39  E-value=2e-06  Score=63.16  Aligned_cols=77  Identities=16%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC-----c-----eEEEEEEec-CCCCc-eeecCCC--CCCCC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----K-----HRAYLELSG-KPNPA-IFRSHPQ--GRLPN   69 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----~-----~~~~~~v~~-~P~p~-~~~~~~~--~~~~~   69 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..|     .     ....+.|.. .|.+| ++...+.  .....
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~  144 (225)
T 1op3_H           65 KGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGG  144 (225)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCC
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCC
Confidence            468888643  4567899999999999999999999875     2     122455554 23333 3332221  12467


Q ss_pred             eEEEEEEecCCCC
Q psy15979         70 SYNITWMVSSYTP   82 (152)
Q Consensus        70 ~~~L~W~~~~~~p   82 (152)
                      .+.|.|.+.+..|
T Consensus       145 ~v~L~C~~~g~~P  157 (225)
T 1op3_H          145 TAALGCLVKDYFP  157 (225)
T ss_dssp             EEEEEEEEEEEBS
T ss_pred             cEEEEEEEEeEEC
Confidence            8999999876533

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.38  E-value=2.5e-07  Score=59.98  Aligned_cols=49  Identities=24%  Similarity=0.527  Sum_probs=37.9

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKP   54 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P   54 (152)
                      +|..++|+.+..++....|.|.+++.+|+|.|+|+    +|.....  +.|...|
T Consensus        47 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p   97 (103)
T 2e7b_A           47 VLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLTVTALP   97 (103)
T ss_dssp             BCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCBCEEEECCC
T ss_pred             ECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEEEEEEEEEecc
Confidence            46677899999888888999999999999999998    4544443  4444443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.38  E-value=1.9e-06  Score=62.81  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC-----c--eEEEEEEecC-CCCcee-ecCC--CCCCCCeEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----K--HRAYLELSGK-PNPAIF-RSHP--QGRLPNSYN   72 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----~--~~~~~~v~~~-P~p~~~-~~~~--~~~~~~~~~   72 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..|     .  ....+.|... +.+|.+ ...+  .......+.
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~  146 (222)
T 1q9r_B           67 KGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVT  146 (222)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEE
T ss_pred             CCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEE
Confidence            368888653  3567899999999999999999999765     1  1234555542 233333 2221  112457899


Q ss_pred             EEEEecCC
Q psy15979         73 ITWMVSSY   80 (152)
Q Consensus        73 L~W~~~~~   80 (152)
                      |.|.+.+.
T Consensus       147 L~C~~~g~  154 (222)
T 1q9r_B          147 LGCLVKGY  154 (222)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEccE
Confidence            99998764

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=98.38  E-value=4.4e-06  Score=61.17  Aligned_cols=112  Identities=13%  Similarity=0.040  Sum_probs=60.8

Q ss_pred             EEEceeCCCCCEEEEEEEEcCCCceEEE-EEE--e--cCCCCceeecCCCCCCCCeEEEEEEecCCCC-cceEEEEEEEC
Q psy15979         20 LMIRKVVASDFGNYSCEATNPMGKHRAY-LEL--S--GKPNPAIFRSHPQGRLPNSYNITWMVSSYTP-LEEFKIKYRKI   93 (152)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v--~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~p-i~~y~~~~r~~   93 (152)
                      -.|..+.....-.....|.|.+|...+. +.+  .  .+|.||............++.|+|..+.... ++.|.++|+..
T Consensus        71 C~~~~~~~~~~Y~~~V~a~N~~G~~~s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~~~~l~yev~y~~~  150 (206)
T 3v6o_A           71 CIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLS  150 (206)
T ss_dssp             EEECSCCTTSCEEEEEEEC---CCEECCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC--------CEEEEEEEEES
T ss_pred             EEeCcHHhcccEEEEEEEEcCCccccCCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCCCCcEEEEEEEEEC
Confidence            3344443333344555789999977642 233  2  5677775432111113679999999764433 47899999987


Q ss_pred             CC-CCCC------c--ceE---EecCCCeEEEEEEEEcCCCCC---CCCCCcc
Q psy15979         94 PG-NEPS------P--MSN---QLTGTNQYQNRRLVRKRFDRG---NSTNGGL  131 (152)
Q Consensus        94 ~~-~~~~------~--~~~---~L~~~~~Y~~rV~A~N~~G~g---~~s~~~~  131 (152)
                      .. ..+.      .  ..+   .|.+++.|+|||+|++..|.|   +.|....
T Consensus       151 ~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS~~~~  203 (206)
T 3v6o_A          151 GKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY  203 (206)
T ss_dssp             SSSCCCEEEEECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCCCCEE
T ss_pred             CCCCceEEEecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCCcceE
Confidence            52 2211      1  123   355699999999999976644   4444443

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=98.38  E-value=3e-06  Score=64.04  Aligned_cols=103  Identities=13%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             EEceeCCCCCEEEEEEEEcCCCceEEE-EEEec----CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCC
Q psy15979         21 MIRKVVASDFGNYSCEATNPMGKHRAY-LELSG----KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (152)
Q Consensus        21 ~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v~~----~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~   95 (152)
                      .+..+...-.-.+++.|.|..|..... +.+..    .|.|+.....  ....+++.|+|..+.. ++..|.++|+....
T Consensus        64 ~~~~l~p~t~Y~~~V~A~n~~G~s~~s~~~~~~~~~~~~~p~~~~~~--~~~~~si~l~W~~p~~-~i~~Y~v~~~~~~~  140 (290)
T 3l5i_A           64 KLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKA--FPKDNMLWVEWTTPRE-SVKKYILEWCVLSD  140 (290)
T ss_dssp             EEEEEECSSCEEEEEEEEESSCBCCCEEEEECCTTCCCCCCCEEEEE--EEETTEEEEEEECCSS-CCCEEEEEEEEECS
T ss_pred             EEEEEcCCceEEEEEEEEcCCCCCCCceEEeecccccCCCccceeEE--EeCCCeEEEEEeCCCC-CCCcEEEEEEECCC
Confidence            345555566677788999999976553 33222    2333322211  1124699999998755 78999999987654


Q ss_pred             CCC-----------CcceE---EecCCCeEEEEEEEEcCCCCCCC
Q psy15979         96 NEP-----------SPMSN---QLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        96 ~~~-----------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ...           ....+   .|.+++.|+|+|.|.|..|.|.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~  185 (290)
T 3l5i_A          141 KAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP  185 (290)
T ss_dssp             SSCCCCEEEEEETTCSEEECCSCCCTTCEEEEEEEEEETTEECCC
T ss_pred             CCCCCcCeEEccCCCcceEEecCcCCccEEEEEEEEEeCCccccc
Confidence            421           11223   46679999999999999999985

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.38  E-value=3.8e-07  Score=61.70  Aligned_cols=69  Identities=22%  Similarity=0.265  Sum_probs=51.5

Q ss_pred             CCCCeEEEEEEecC----CCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVSS----YTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ...+++.|+|..+.    +.+|..|.|+|+......        .....+   .|.+++.|.|+|.|.|..|.|.++...
T Consensus        30 ~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  109 (132)
T 1x5h_A           30 RNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL  109 (132)
T ss_dssp             CSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECCCE
T ss_pred             CCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEEeCCCCCCCEEEEEEEEEcCCccCCCCcCE
Confidence            35689999999863    357899999998764321        111334   466699999999999999999988766


Q ss_pred             cccc
Q psy15979        131 LIVP  134 (152)
Q Consensus       131 ~~~~  134 (152)
                      .+.+
T Consensus       110 ~~~T  113 (132)
T 1x5h_A          110 SAET  113 (132)
T ss_dssp             EEEC
T ss_pred             EeEc
Confidence            5544

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.37  E-value=4.8e-07  Score=69.79  Aligned_cols=103  Identities=13%  Similarity=0.112  Sum_probs=61.2

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec--CCCCc--eeecCCCCCCCCeEEEEEE-----ecCCCCcceEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPA--IFRSHPQGRLPNSYNITWM-----VSSYTPLEEFKI   88 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~--~P~p~--~~~~~~~~~~~~~~~L~W~-----~~~~~pi~~y~~   88 (152)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|..  .|.+.  .............+.|.|.     ..+.+ ...+.|
T Consensus        81 ~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p-~~~v~W  159 (339)
T 3o4o_C           81 GALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKT-DVKIQW  159 (339)
T ss_dssp             TEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSS-CCCBCC
T ss_pred             CeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCC-CceEEE
Confidence            47999999999999999999999998877666553  33221  1000001124678899998     44433 223443


Q ss_pred             EEEECCC-CC--------CCcceEEecC-----CCeEEEEEEEEcCCCCC
Q psy15979         89 KYRKIPG-NE--------PSPMSNQLTG-----TNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        89 ~~r~~~~-~~--------~~~~~~~L~~-----~~~Y~~rV~A~N~~G~g  124 (152)
                       ++.... ..        .....+.|..     .+.|.|  .|.|..|..
T Consensus       160 -~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~  206 (339)
T 3o4o_C          160 -YKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC--VLTFAHEGQ  206 (339)
T ss_dssp             -EESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEE--EEECCBTTB
T ss_pred             -ecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEE--EEEECCCCe
Confidence             332110 00        0112344433     788988  678988753

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.37  E-value=3.4e-07  Score=65.44  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=34.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P   54 (152)
                      .+.|.|.+++.+|+|.|+|.|.|.+|.....+.|.+.+
T Consensus       175 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          175 SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP  212 (214)
T ss_dssp             SSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             CCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence            45899999999999999999999999999988887653

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=98.37  E-value=1.5e-06  Score=74.39  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEEEEcCCCceEEE--EEEecCCCCc-eeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCC----
Q psy15979         26 VASDFGNYSCEATNPMGKHRAY--LELSGKPNPA-IFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPG----   95 (152)
Q Consensus        26 ~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~-~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~----   95 (152)
                      ..++.|.+.| +.|..|..-..  ..+.+.|.|| .... ......+++.|+|..+.   ..++. |.|+|+....    
T Consensus       131 d~~c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~l~-v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~  207 (680)
T 1zlg_A          131 DNECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELR-FTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPS  207 (680)
T ss_pred             cccCCCcccc-ccccccccccccceeeecccccccccce-EEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcC
Confidence            3567899999 78888874331  2234566665 2211 11245789999999852   45777 9999997632    


Q ss_pred             ----CCC------CcceE---EecCCCeEEEEEEEEcCCC-CCCCCCCccc
Q psy15979         96 ----NEP------SPMSN---QLTGTNQYQNRRLVRKRFD-RGNSTNGGLI  132 (152)
Q Consensus        96 ----~~~------~~~~~---~L~~~~~Y~~rV~A~N~~G-~g~~s~~~~~  132 (152)
                          ..+      ....+   .|.+++.|+|||.|.|.+| .|.++.+..+
T Consensus       208 ~~~~~~w~~v~~~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~  258 (680)
T 1zlg_A          208 EDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHF  258 (680)
T ss_pred             ccccCceEEEEecCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccce
Confidence                111      11233   3666999999999999999 5555544433

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.36  E-value=2.6e-06  Score=63.35  Aligned_cols=67  Identities=16%  Similarity=0.172  Sum_probs=47.1

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCceeecCCCCCCCCeEEEEEEecCCCCc
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPL   83 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi   83 (152)
                      .....|.|.+|+.+|+|.|.|+|.|..|+....+.|  ...|..+..... .......+ |+|.+.+..|.
T Consensus        56 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~  124 (210)
T 1gsm_A           56 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPV  124 (210)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCC
T ss_pred             CCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCC
Confidence            457889999999999999999999999988765555  455543332211 11223556 99998765453

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.35  E-value=5.1e-07  Score=63.53  Aligned_cols=48  Identities=35%  Similarity=0.576  Sum_probs=38.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+.++.+.  +..+.|.|.+++.+|+|.|+|.|.|.+|.....+.|.
T Consensus       138 ~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  185 (189)
T 2v5t_A          138 LIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ  185 (189)
T ss_dssp             ECCCSSSEEEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ECcCCCcEEEe--cCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEE
Confidence            34556677665  3356899999999999999999999999998876654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.35  E-value=5.5e-06  Score=63.36  Aligned_cols=75  Identities=11%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCC-CceE------EEEEEecC-----------C--CCceeecCCC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM-GKHR------AYLELSGK-----------P--NPAIFRSHPQ   64 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~------~~~~v~~~-----------P--~p~~~~~~~~   64 (152)
                      +|+.+..  .+...+|.|.+++.+|+|.|.|.+.|.. |...      ..+.|...           |  .++.+...+.
T Consensus        88 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~  167 (291)
T 2gki_A           88 GKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPS  167 (291)
T ss_dssp             TTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCS
T ss_pred             CCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCC
Confidence            6776654  2356789999999999999999999985 3211      13444441           1  1222222111


Q ss_pred             ---CCCCCeEEEEEEecCCC
Q psy15979         65 ---GRLPNSYNITWMVSSYT   81 (152)
Q Consensus        65 ---~~~~~~~~L~W~~~~~~   81 (152)
                         ......+.|.|.+.+..
T Consensus       168 ~~~v~~G~~v~L~C~~~~~~  187 (291)
T 2gki_A          168 SLAVSAGEKVTMSCKSSQSL  187 (291)
T ss_dssp             EEEEETTSCEEEEEEESSCC
T ss_pred             EEEEcCCCcEEEEEEcCCcc
Confidence               12468899999987653

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.35  E-value=1.1e-06  Score=56.25  Aligned_cols=63  Identities=11%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+++.|+|..+. .++..|.+.|+......        ....++.   |.+++.|+|+|.|.|..|.|.+....
T Consensus        14 ~~~si~lsW~~p~-~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~s~p~~~~   87 (94)
T 1j8k_A           14 DVDSIKIAWESPQ-GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGT   87 (94)
T ss_dssp             ETTEEEEECCCCS-SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSSCCCCCEEEE
T ss_pred             cCCEEEEEEcCCC-CCcceEEEEEEeCCCCCceEEecCCCCccEEEeCCCCCCCEEEEEEEEEcCCCcCCCEEeE
Confidence            4689999998765 57899999998754211        1123444   56699999999999999999886543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.35  E-value=6.1e-07  Score=65.66  Aligned_cols=83  Identities=17%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE-----EEEEEecCC-CCceeec-CCC--CCCCCeEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-----AYLELSGKP-NPAIFRS-HPQ--GRLPNSYNITWM   76 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-----~~~~v~~~P-~p~~~~~-~~~--~~~~~~~~L~W~   76 (152)
                      .+|+.+...+...+|.|.+++.+|+|.|+|.|.|..|...     ..+.|...| .+|.+.. .+.  ......+.|.|.
T Consensus        79 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~  158 (234)
T 2j6e_L           79 PDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCL  158 (234)
T ss_dssp             CTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEEC
T ss_pred             cccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEE
Confidence            3688887666778999999999999999999999988311     123332222 2333221 111  112457889998


Q ss_pred             ecCCCCc-ceEEE
Q psy15979         77 VSSYTPL-EEFKI   88 (152)
Q Consensus        77 ~~~~~pi-~~y~~   88 (152)
                      +.+..|. ..+.|
T Consensus       159 ~~g~~p~~~~v~W  171 (234)
T 2j6e_L          159 ISDFFPGAVTVAW  171 (234)
T ss_dssp             CCBCSSCCCEEEE
T ss_pred             EEEEcCCceEEEE
Confidence            8764333 24444

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.3e-06  Score=58.25  Aligned_cols=64  Identities=14%  Similarity=0.233  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCC-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      .+.+++.|+|.... .++..|+|.|+.......       ...++.   |.+++.|.|+|.|.|..|.|.++...
T Consensus        19 vt~tsi~vsW~pp~-~~i~~Y~I~y~~~~~~~~~~~~v~~~~t~~~l~~L~p~T~Y~v~V~A~~~~g~s~p~~~~   92 (108)
T 2ee3_A           19 VSHDAARVFWEGAP-RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGR   92 (108)
T ss_dssp             CCSSCEEEEESCCS-SCCSEEEEEEEETTTCCBCCEEEETTCCEEEECSCCSSCEEEEEEEEECTTSCEEEEEEE
T ss_pred             ccCCeEEEEeeCCC-CCccEEEEEEEeCCCCceeEEEcCCCcCEEEcCCCCCCCEEEEEEEEEeCCCcCCCccCE
Confidence            45789999999764 579999999998754321       113444   55599999999999999999988654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.34  E-value=6.8e-07  Score=64.73  Aligned_cols=40  Identities=33%  Similarity=0.365  Sum_probs=35.4

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      .|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.+.+
T Consensus       156 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s  195 (212)
T 2yd6_A          156 GRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS  195 (212)
T ss_dssp             CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             ceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcccc
Confidence            5677766667889999999999999999999999998876

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.33  E-value=4.6e-06  Score=65.08  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP   56 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p   56 (152)
                      ...|.|.+++.+|+|.|+|.|.|..+..+..+.|.  ..|.+
T Consensus       141 ~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~  182 (363)
T 1wio_A          141 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA  182 (363)
T ss_dssp             SSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCS
T ss_pred             ceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCC
Confidence            46899999999999999999999988877754443  44443

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=98.33  E-value=3.4e-06  Score=60.71  Aligned_cols=59  Identities=15%  Similarity=0.277  Sum_probs=46.6

Q ss_pred             CCeEEEEEEecCCCCcceEEEEEEECCC-CCC-------CcceEE---ecCCCeEEEEEEEEcCCCCCCC
Q psy15979         68 PNSYNITWMVSSYTPLEEFKIKYRKIPG-NEP-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        68 ~~~~~L~W~~~~~~pi~~y~~~~r~~~~-~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .+++.|+|..+...++..|.|+|+.... ..+       ....+.   |.+++.|+|+|.|.|..|.|.+
T Consensus        15 ~~si~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~~~~   84 (201)
T 2ha1_A           15 PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEV   84 (201)
T ss_dssp             SSCEEEEEECCSSTTCCEEEEEEEETTCSSCCEEEEECTTCCEEEECSCCTTEEEEEEEEEECTTSCEEE
T ss_pred             CCEEEEEEeCCCCCCceEEEEEEEECCCCCceEEEecCCCccEEEecCCCCCCEEEEEEEEEecccccCc
Confidence            7899999999876789999999997643 221       123443   6669999999999999999875

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=98.33  E-value=6.6e-06  Score=63.52  Aligned_cols=113  Identities=9%  Similarity=0.032  Sum_probs=69.9

Q ss_pred             eEEEEceeCC----CCCEEEEEEEEcCCCceEEE-EEE--e--cCCCCceeecCCCCCCCCeEEEEEEecCC--CCcceE
Q psy15979         18 HTLMIRKVVA----SDFGNYSCEATNPMGKHRAY-LEL--S--GKPNPAIFRSHPQGRLPNSYNITWMVSSY--TPLEEF   86 (152)
Q Consensus        18 ~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~~-~~v--~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~~--~pi~~y   86 (152)
                      ..+.|..+..    ...-.+...|.|..|..... +.+  .  ++|.||......  ....++.|+|..+..  ..++.|
T Consensus       155 ~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~~~~~~~~~v~P~pP~~l~~~--~~~~~l~lsW~~P~~~~~~~l~Y  232 (314)
T 3bpo_C          155 FGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLS--FHNDDLYVQWENPQNFISRCLFY  232 (314)
T ss_dssp             EEEEEECCC--------CCEEEEEEETTSCSCCEEEEECSSSSEECCCCEEEEEE--EETTEEEEEEECCTTCCGGGEEE
T ss_pred             EEEEECCCCccccceeEEEEEEEEEcCCCceecccEEEehhheEeeCCCCEEEEE--EcCCcEEEEEeCCCccCCceEEE
Confidence            4455555542    23344567799998876443 222  2  457777644321  345799999998752  235789


Q ss_pred             EEEEEECCCCCC--------------------CcceE---EecCCCeEEEEEEEEcC------CC-CCCCCCCccc
Q psy15979         87 KIKYRKIPGNEP--------------------SPMSN---QLTGTNQYQNRRLVRKR------FD-RGNSTNGGLI  132 (152)
Q Consensus        87 ~~~~r~~~~~~~--------------------~~~~~---~L~~~~~Y~~rV~A~N~------~G-~g~~s~~~~~  132 (152)
                      .|+|+......+                    ....+   .|.+++.|.|||+|++.      .| ||+.|....+
T Consensus       233 ev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~  308 (314)
T 3bpo_C          233 EVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSI  308 (314)
T ss_dssp             EEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCCCCEEE
T ss_pred             EEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCCCCeEe
Confidence            999987654321                    11233   35669999999999985      56 7888876655

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.33  E-value=4.1e-07  Score=71.37  Aligned_cols=105  Identities=16%  Similarity=0.080  Sum_probs=59.5

Q ss_pred             EeEEEEc----eeCCCCCEEEEEEEEcCCCceEE-EE--EEecCCCCceeecCC-CCCCCCeEEEEEEecCCCCcceEEE
Q psy15979         17 RHTLMIR----KVVASDFGNYSCEATNPMGKHRA-YL--ELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        17 ~~~L~I~----~v~~~D~G~YtC~A~N~~G~~~~-~~--~v~~~P~p~~~~~~~-~~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      .+.|.|.    +++.+|+|.|+|.|.|..|...+ .+  .|...|..+.....+ .......+.|.|.+....|...+.|
T Consensus        72 ~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W  151 (404)
T 3p3y_A           72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW  151 (404)
T ss_dssp             SCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEE
T ss_pred             CceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEE
Confidence            4556664    88999999999999999998753 44  444444322111111 1124678899998844444444444


Q ss_pred             EEEECCCCCC--------CcceEE-----ecC-CCeEEEEEEEEcCCCCC
Q psy15979         89 KYRKIPGNEP--------SPMSNQ-----LTG-TNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        89 ~~r~~~~~~~--------~~~~~~-----L~~-~~~Y~~rV~A~N~~G~g  124 (152)
                       ++.......        ....+.     ..+ ++.|.|  .|.|..|..
T Consensus       152 -~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C--~a~n~~~~~  198 (404)
T 3p3y_A          152 -MSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC--NARFHFTHT  198 (404)
T ss_dssp             -ECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEE--EEECTTTCC
T ss_pred             -eCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEE--EEEeccccc
Confidence             332111000        011222     333 578998  668888864

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.33  E-value=2e-06  Score=67.29  Aligned_cols=65  Identities=18%  Similarity=0.129  Sum_probs=41.8

Q ss_pred             EeEEEEceeCCCC------CEEEEEEEEcCCCceEE---EEEEecCCCCceeecCCCCCCCCeEEEEEEecCCC
Q psy15979         17 RHTLMIRKVVASD------FGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYT   81 (152)
Q Consensus        17 ~~~L~I~~v~~~D------~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~   81 (152)
                      ++.|.|.+++.+|      +|.|+|.|.|..|...+   .+.+...|................+.|.|.+.+..
T Consensus        58 ~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~  131 (388)
T 2v5m_A           58 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV  131 (388)
T ss_dssp             TTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTT
T ss_pred             CceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCC
Confidence            3579999999987      99999999999997543   34443433221111000112357888988887653

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.32  E-value=1e-05  Score=65.61  Aligned_cols=77  Identities=14%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCc--------eEEEEEEec-CCCCce-eecCC-CCCCCCeEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK--------HRAYLELSG-KPNPAI-FRSHP-QGRLPNSYN   72 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~--------~~~~~~v~~-~P~p~~-~~~~~-~~~~~~~~~   72 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|.|.+.|..|.        ....+.|.. .+.+|. +...+ .......+.
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~  145 (475)
T 1iga_A           66 RGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVV  145 (475)
T ss_pred             CCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEE
Confidence            467877643  35678999999999999999999998762        112344443 233333 32211 113467899


Q ss_pred             EEEEecCCCC
Q psy15979         73 ITWMVSSYTP   82 (152)
Q Consensus        73 L~W~~~~~~p   82 (152)
                      |.|.+.+..|
T Consensus       146 L~C~~~g~~P  155 (475)
T 1iga_A          146 IACLVQGFFP  155 (475)
T ss_pred             EEEEEeeecC
Confidence            9999877544

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.32  E-value=3.4e-07  Score=62.26  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=36.5

Q ss_pred             CcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .|..+..+   ..+.+|.|.+|+.+|+|.|+|.+.|..|..++.++|.
T Consensus        70 ~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~Lk  117 (125)
T 4gos_A           70 GRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYK  117 (125)
T ss_dssp             TCEEECTTTGGGTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceEEEecCCccCCeEEEEECCCChHHCEEEEEEEEeCCCeEEEEEEEE
Confidence            45555422   1245799999999999999999999999999988875

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.31  E-value=8.6e-07  Score=58.54  Aligned_cols=51  Identities=22%  Similarity=0.212  Sum_probs=39.7

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p   56 (152)
                      ++|+.+..  .....+|+|.+++.+|+|.|.|.+.|........+.|.+.|.|
T Consensus        60 ~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           60 KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             CCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            46787763  3456789999999999999999999986556667777776655

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.31  E-value=4.2e-06  Score=61.36  Aligned_cols=77  Identities=10%  Similarity=0.183  Sum_probs=50.2

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC----c----eEEEEEEec-CCCCceee-cCC--CCCCCCeE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG----K----HRAYLELSG-KPNPAIFR-SHP--QGRLPNSY   71 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G----~----~~~~~~v~~-~P~p~~~~-~~~--~~~~~~~~   71 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..|    .    ....+.|.. .+.+|.+. ..+  .......+
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v  144 (223)
T 1dee_B           65 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTV  144 (223)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEE
T ss_pred             CCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcE
Confidence            468888643  3467899999999999999999999764    1    112455553 33343332 221  11245789


Q ss_pred             EEEEEecCCCC
Q psy15979         72 NITWMVSSYTP   82 (152)
Q Consensus        72 ~L~W~~~~~~p   82 (152)
                      .|.|.+.+..|
T Consensus       145 ~L~C~~~g~~P  155 (223)
T 1dee_B          145 AVGCLAQDFLP  155 (223)
T ss_dssp             EEEEEEEEEBS
T ss_pred             EEEEEEEEEeC
Confidence            99999876533

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.31  E-value=1.1e-06  Score=60.10  Aligned_cols=48  Identities=25%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             CCcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          6 TERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         6 ~~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      .+|+.+..+   ....+|.|.+|+.+|+|.|+|.+.|..|..+..+.|.+.
T Consensus        70 ~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           70 RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             TTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCceEEccccccCCeEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            367777642   246789999999999999999999999987776666543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.31  E-value=5.8e-07  Score=64.40  Aligned_cols=48  Identities=31%  Similarity=0.558  Sum_probs=38.6

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEe
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~   51 (152)
                      +|..++++.+...  .++|.|.+++.+|+|.|+|.|.|.+|...+ .+.|.
T Consensus       149 ~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~  197 (208)
T 3r4d_A          149 SLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD  197 (208)
T ss_dssp             ECCCCSSEEEETT--TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEEC
T ss_pred             eCCCCCCeEEcCC--CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeee
Confidence            3556677877633  368999999999999999999999999887 35554

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=98.30  E-value=2.8e-06  Score=55.66  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             CCCCeEEEEEEecC--CCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcC--CCCCC
Q psy15979         66 RLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKR--FDRGN  125 (152)
Q Consensus        66 ~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~--~G~g~  125 (152)
                      ...+++.|+|..+.  +.++..|.|.|+......        ....++.   |.+++.|.|+|.|.|.  .|.|.
T Consensus        19 ~t~~Sv~lsW~~p~~~~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~~~~~~G~~~   93 (103)
T 3t04_D           19 ATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEP   93 (103)
T ss_dssp             EETTEEEEECTTTTTTSCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEESCCCTTCCC
T ss_pred             cCCCEEEEEccCCCCCCCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEeCCCCCCCC
Confidence            35789999999754  368999999999874321        1113444   6669999999999999  88887

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.28  E-value=1.1e-06  Score=65.89  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=34.9

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~   57 (152)
                      .+.|.|.+++.+|+|.|+|+|.|.+|.+++++.|...+.+.
T Consensus       244 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          244 VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             EEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred             eEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence            56899999999999999999999999999999988776554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.28  E-value=8.5e-07  Score=71.74  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=35.2

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .|+.+..+   ++|.|.+|+.+|+|.|+|+|+|.+|.+++++.+.+
T Consensus       389 ~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v  431 (440)
T 3zyj_A          389 VRIAVLSD---GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV  431 (440)
T ss_dssp             SSEEECTT---CCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ceEEEccC---CeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEE
Confidence            35655433   46999999999999999999999999998766653

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=98.27  E-value=2.8e-06  Score=56.02  Aligned_cols=68  Identities=10%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             CCCeEEEEE--EecC--CCCcceEEEEEEECCCCC-C--CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccccc
Q psy15979         67 LPNSYNITW--MVSS--YTPLEEFKIKYRKIPGNE-P--SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPK  135 (152)
Q Consensus        67 ~~~~~~L~W--~~~~--~~pi~~y~~~~r~~~~~~-~--~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~  135 (152)
                      ...++.|+|  ..+.  +.. ..|.|+|+...... .  ....+   .|.+++.|.|+|+|.|..|.|.++....+.+.
T Consensus        22 ~~~sv~l~W~~~~P~~~ng~-~~Y~v~y~~~~~~~~~~~~~~~~~i~~L~p~t~Y~f~V~A~~~~G~g~~S~~~~~~T~   99 (107)
T 1x5a_A           22 EPRQLELTWAGSRPRNPGGN-LSYELHVLNQDEEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTS   99 (107)
T ss_dssp             ETTEEEEECCCCCSSCCSSC-CEEEEEEECSSCEEEEEESSSEEEEESCCSSCEEEEEEEEECSSSCCCCCCCEEEECC
T ss_pred             CCCEEEEEECCCCCCCCCCc-eEEEEEEEeCCCCceEEEecceEEECCCCCCCEEEEEEEEECCCccCCCCCCEEEEEC
Confidence            468999999  6543  234 88999998761111 0  01114   46669999999999999999999987766554

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.27  E-value=5.3e-06  Score=66.36  Aligned_cols=103  Identities=14%  Similarity=0.170  Sum_probs=61.2

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE--ecCCCCceeecCCC---CCCCCeEEEEEEecCCCCcceEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIK   89 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v--~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~~pi~~y~~~   89 (152)
                      .....|.|.+++. |+| |+|.|.|..|.....+.|  ...|.  .+...+.   ......+.|.|.+.+..+...+.+.
T Consensus        47 ~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~--~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~  122 (450)
T 1z7z_I           47 NNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPE--RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV  122 (450)
T ss_dssp             TTEEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCS--EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEE
T ss_pred             CCceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCC--cceecCCCceEeeCCeEEEEEEecCCCCCcCcEEE
Confidence            3456899999987 999 999998877766655444  44332  2222211   2246899999999876655423222


Q ss_pred             EEECCCC--------CCCcceEEe-----cCCCeEEEEEEEEcCCCC
Q psy15979         90 YRKIPGN--------EPSPMSNQL-----TGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        90 ~r~~~~~--------~~~~~~~~L-----~~~~~Y~~rV~A~N~~G~  123 (152)
                      +.+.+..        ......+.|     .+.+.|.|  .|.|..|.
T Consensus       123 W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C--~a~n~~g~  167 (450)
T 1z7z_I          123 LLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC--RTELDLRP  167 (450)
T ss_dssp             EEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEE--EEEEECGG
T ss_pred             EeeCCEEeecccccccccceEEEEEeeccccCceEEE--EEEcccCC
Confidence            2222110        011123333     33789998  67888874

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=98.27  E-value=3.5e-06  Score=61.03  Aligned_cols=67  Identities=15%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             CCCCeEEEEEEecC------CCCcceEEEEEEECCCCCCC-------cceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSS------YTPLEEFKIKYRKIPGNEPS-------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~~------~~pi~~y~~~~r~~~~~~~~-------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ...+++.|+|..+.      ..++..|.++|+........       ..++.   |.+++.|+|+|.|.|..|.|.++..
T Consensus        16 ~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~   95 (211)
T 3p4l_A           16 LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT   95 (211)
T ss_dssp             CSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEEEESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCC
T ss_pred             cCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEeCCCceEEEecCcCCCCEEEEEEEEEcCCCCCcccee
Confidence            34689999999753      46788999999986543211       12444   5669999999999999999998775


Q ss_pred             ccc
Q psy15979        130 GLI  132 (152)
Q Consensus       130 ~~~  132 (152)
                      ..+
T Consensus        96 ~~~   98 (211)
T 3p4l_A           96 AHG   98 (211)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            544

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.27  E-value=4e-06  Score=61.10  Aligned_cols=75  Identities=13%  Similarity=0.254  Sum_probs=49.3

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCc-----eEEEEEEec-CCCCc-eeecCCC--CCCCCeEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSG-KPNPA-IFRSHPQ--GRLPNSYNIT   74 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-----~~~~~~v~~-~P~p~-~~~~~~~--~~~~~~~~L~   74 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|.|.+.|..|.     ....+.|.. .|.+| +....+.  ......+.|.
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  143 (215)
T 1c5d_H           64 KSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLG  143 (215)
T ss_dssp             GGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEE
T ss_pred             cCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEE
Confidence            368888642  34678999999999999999999997431     123455553 33333 3322211  1235789999


Q ss_pred             EEecCC
Q psy15979         75 WMVSSY   80 (152)
Q Consensus        75 W~~~~~   80 (152)
                      |.+.+.
T Consensus       144 C~~~g~  149 (215)
T 1c5d_H          144 CLVKGY  149 (215)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            998765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.27  E-value=1.4e-06  Score=68.07  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      ..++|.|.+++.+|+|.|+|+|+|.+|.++.++.|.+.
T Consensus       307 ~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             cceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            36789999999999999999999999999998887654

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.27  E-value=6.1e-06  Score=60.38  Aligned_cols=77  Identities=16%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCce-----EEEEEEecCC-CCceeec-CCC-CCCCCeEEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSGKP-NPAIFRS-HPQ-GRLPNSYNITW   75 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~~~v~~~P-~p~~~~~-~~~-~~~~~~~~L~W   75 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|.|.+.|..+..     ...+.|...+ .+|.+.. ... ......+.|.|
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C  144 (220)
T 2fbj_H           65 KDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGC  144 (220)
T ss_dssp             TTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEE
T ss_pred             CCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEE
Confidence            468888753  456789999999999999999999986531     1245555432 3333322 111 12357889999


Q ss_pred             EecCCCC
Q psy15979         76 MVSSYTP   82 (152)
Q Consensus        76 ~~~~~~p   82 (152)
                      .+.+..|
T Consensus       145 ~~~g~~P  151 (220)
T 2fbj_H          145 LIHDYFP  151 (220)
T ss_dssp             EEEEEBS
T ss_pred             EEEeEEC
Confidence            8876533

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.27  E-value=1.7e-06  Score=57.74  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             CCCeEEEEEEec----CCCCcceEEEEEEECCCCCC---------------CcceE---EecCCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEP---------------SPMSN---QLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~---------------~~~~~---~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..+++.|+|..+    .+.+|..|.++|+.......               ....+   .|.+++.|.|+|.|.|..|.|
T Consensus        27 ~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  106 (125)
T 1uen_A           27 NSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEG  106 (125)
T ss_dssp             ETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEEEEEEEEEESSCEE
T ss_pred             CCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccEEEeCCCCCCCEEEEEEEEecCCCCC
Confidence            467999999975    24579999999987654321               01233   366699999999999999999


Q ss_pred             CCCCCccccc
Q psy15979        125 NSTNGGLIVP  134 (152)
Q Consensus       125 ~~s~~~~~~~  134 (152)
                      .++....+..
T Consensus       107 ~~S~~~~~~T  116 (125)
T 1uen_A          107 PASPDRVFNT  116 (125)
T ss_dssp             EECCCEEEEC
T ss_pred             CCCCCEEEEC
Confidence            9887665533

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.26  E-value=2.7e-06  Score=65.72  Aligned_cols=107  Identities=13%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             EeEEEEceeCCCCCE-EEEEEEEcCCCceEEEE--EEecCCCCceeecC--CCCCCCCeEEEEEEecCCCCcceEEEEEE
Q psy15979         17 RHTLMIRKVVASDFG-NYSCEATNPMGKHRAYL--ELSGKPNPAIFRSH--PQGRLPNSYNITWMVSSYTPLEEFKIKYR   91 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~~--~v~~~P~p~~~~~~--~~~~~~~~~~L~W~~~~~~pi~~y~~~~r   91 (152)
                      .+.|.|.+++.+|+| .|+|.|.|..|......  .+...| |..+...  ........+.|.|.+.+.++...+.| |+
T Consensus        88 ~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~-p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W-~k  165 (329)
T 3oq3_B           88 NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP-PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITW-YK  165 (329)
T ss_dssp             TTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCC-CSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEE-EE
T ss_pred             cceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCC-CcEeccccceEEeCCCcEEEEeccCCCCCCceEEE-EE
Confidence            458999999999999 99999999999766543  222222 2111111  11223678999998877542334444 33


Q ss_pred             ECCC---CCCC----cceEE-----ecCCCeEEEEEEEEcC--CCCCCCC
Q psy15979         92 KIPG---NEPS----PMSNQ-----LTGTNQYQNRRLVRKR--FDRGNST  127 (152)
Q Consensus        92 ~~~~---~~~~----~~~~~-----L~~~~~Y~~rV~A~N~--~G~g~~s  127 (152)
                      ....   ....    ...+.     ..+.+.|.|  .|.|.  +|....+
T Consensus       166 ~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C--~a~n~~~~g~~~~~  213 (329)
T 3oq3_B          166 NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDC--YVHYDDVRIKNDIV  213 (329)
T ss_dssp             TTEECCCSSSSEEEETTEEEECSCCGGGCEEEEE--EEEECCTTSSSCEE
T ss_pred             CCccCCCCCceEecCCCEEEEeecChhhCEEEEE--EEEecccCCCceeE
Confidence            2110   0000    12233     334889999  56776  7755443

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.26  E-value=4.4e-06  Score=61.39  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=48.8

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC------c-----eEEEEEEec-CCCCce-eecCCC--CCCC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG------K-----HRAYLELSG-KPNPAI-FRSHPQ--GRLP   68 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G------~-----~~~~~~v~~-~P~p~~-~~~~~~--~~~~   68 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..|      .     ....+.|.. .+.+|. ....+.  ....
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g  145 (228)
T 3bae_H           66 ESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTG  145 (228)
T ss_dssp             GGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CC
T ss_pred             CCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCC
Confidence            368887642  3467899999999999999999999875      1     113455553 233333 322211  1245


Q ss_pred             CeEEEEEEecCC
Q psy15979         69 NSYNITWMVSSY   80 (152)
Q Consensus        69 ~~~~L~W~~~~~   80 (152)
                      ..+.|.|.+.+.
T Consensus       146 ~~~~l~C~~~g~  157 (228)
T 3bae_H          146 SSVTLGCLVKGY  157 (228)
T ss_dssp             SEEEEEEEEEEE
T ss_pred             CCEEEEEEEccE
Confidence            789999998764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.26  E-value=2.3e-06  Score=66.65  Aligned_cols=77  Identities=13%  Similarity=0.200  Sum_probs=51.4

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEec-CCCCceee-cCC--CCCCCCeEEEEEEe
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSG-KPNPAIFR-SHP--QGRLPNSYNITWMV   77 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~~-~P~p~~~~-~~~--~~~~~~~~~L~W~~   77 (152)
                      ++|+.+..+  +...+|.|.+++.+|+|.|+|.|.|..+....  .+.|.. .+.+|.+. ..+  .......+.|.|.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~  144 (344)
T 1za6_B           65 KGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  144 (344)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEE
Confidence            468888653  45678999999999999999999996544322  455542 33444332 221  11346799999998


Q ss_pred             cCCCC
Q psy15979         78 SSYTP   82 (152)
Q Consensus        78 ~~~~p   82 (152)
                      .++.|
T Consensus       145 ~g~~P  149 (344)
T 1za6_B          145 KDYFP  149 (344)
T ss_dssp             EEEBS
T ss_pred             eeEEC
Confidence            76533

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.26  E-value=9.1e-07  Score=59.26  Aligned_cols=43  Identities=19%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCC-ceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G-~~~~~~~v~   51 (152)
                      .+|..+..+   ++|.|.||+.+|+|.|+|.+.|..| ..++++.|.
T Consensus        63 ~gR~~~~~n---gSL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~  106 (111)
T 2qsq_A           63 SGREIIYPN---ASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFR  106 (111)
T ss_dssp             CSCEEECTT---SCEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEE
T ss_pred             CCcEEEecC---CcEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEE
Confidence            478888644   4899999999999999999999977 456565554

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.26  E-value=1.2e-05  Score=53.46  Aligned_cols=74  Identities=9%  Similarity=0.088  Sum_probs=50.3

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~  123 (152)
                      .|.||..... .....+++.|+|..+. ..+..|.+.|+......      .....+.   |.+++.|.|+|.|.|..|.
T Consensus         7 ~p~~P~~l~~-~~~t~~sv~lsW~~p~-~~i~~Y~v~y~~~~~~~~~~~v~~~~t~~~l~~L~P~t~Y~~~V~A~~~~~~   84 (115)
T 2cuh_A            7 GPDGPTQLRA-LNLTEGFAVLHWKPPQ-NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNL   84 (115)
T ss_dssp             CCSSCEEEEC-CCCSSSCEEEEEECCS-SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTEE
T ss_pred             CCCCCcceEE-EeccCCeEEEEEECCC-CCccEEEEEEEcCCCCcEEEEECCCccEEEEeCCCCCCEEEEEEEEEeCCCc
Confidence            4555543321 2334789999999764 46889999998754321      1113444   5569999999999999888


Q ss_pred             CCCCC
Q psy15979        124 GNSTN  128 (152)
Q Consensus       124 g~~s~  128 (152)
                      |.+..
T Consensus        85 s~~~~   89 (115)
T 2cuh_A           85 TSPAS   89 (115)
T ss_dssp             CCCEE
T ss_pred             CCCEE
Confidence            87653

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.26  E-value=1.1e-06  Score=68.83  Aligned_cols=79  Identities=20%  Similarity=0.173  Sum_probs=47.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCC-CCCEEEEEEEEcCCCceEE---EEEEecCCCCceeecCC-CCCCCCeEEEEEEecCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSY   80 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~---~~~v~~~P~p~~~~~~~-~~~~~~~~~L~W~~~~~   80 (152)
                      +.|+.+.    .+.|.|.++.. +|+|.|+|+|.|..|....   .+.|...|......... .......+.|.|.+...
T Consensus        53 ~~~~~~~----~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~  128 (382)
T 1cs6_A           53 DSRYRLV----AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPH  128 (382)
T ss_dssp             TSSEEEE----TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSE
T ss_pred             CccEEee----CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCC
Confidence            4567664    24799999997 9999999999999997643   44444333211110000 01235678888876443


Q ss_pred             CCcceEEE
Q psy15979         81 TPLEEFKI   88 (152)
Q Consensus        81 ~pi~~y~~   88 (152)
                      .|...+.|
T Consensus       129 ~p~~~i~W  136 (382)
T 1cs6_A          129 YPALSYRW  136 (382)
T ss_dssp             ESCCEEEE
T ss_pred             CCCcEEEE
Confidence            34344544

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.26  E-value=4.9e-07  Score=59.69  Aligned_cols=51  Identities=25%  Similarity=0.331  Sum_probs=37.7

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCce--EEEEEEecCCCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELSGKPNP   56 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~~~v~~~P~p   56 (152)
                      ++|+.+..  .....+|+|.+++.+|+|.|.|.+.|..+..  ...+.|.+.|.+
T Consensus        59 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p~~  113 (116)
T 2or8_A           59 SSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPEL  113 (116)
T ss_dssp             STTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEEEEEECSC
T ss_pred             CCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEcCCcccccEEEEEEEECCcc
Confidence            46676631  3345689999999999999999999976543  666777766543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.25  E-value=8.9e-07  Score=64.44  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .++|.|.+++.+|+|.|+|.|.|..|.....+.|.+
T Consensus       170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V  205 (213)
T 2x1w_L          170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV  205 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEE
Confidence            457999999999999999999999999988766654

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.25  E-value=7.8e-07  Score=58.68  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             CCcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          6 TERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         6 ~~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .+|+.+..+   ....+|.|.+++.+|+|.|.|.+.|..|.....+.|.+
T Consensus        74 ~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  123 (126)
T 1eaj_A           74 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  123 (126)
T ss_dssp             TTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCeeEEEcccccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEE
Confidence            356666432   23467999999999999999999999998777766653

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.25  E-value=1.6e-06  Score=65.37  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|.+...+.|...
T Consensus       250 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  287 (290)
T 2o26_X          250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV  287 (290)
T ss_dssp             EEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred             EEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence            45789999999999999999999999999888777653

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.25  E-value=8.3e-07  Score=68.20  Aligned_cols=39  Identities=28%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p   56 (152)
                      +.|.|.+++.+|+|.|+|.|.|.+|.+...+.|.+.+.|
T Consensus       291 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             CCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred             cEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence            479999999999999999999999999998777655444

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.25  E-value=9.9e-07  Score=66.00  Aligned_cols=106  Identities=14%  Similarity=0.046  Sum_probs=61.8

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcC-CCceE---EE--EEEecCCCCceeecCC--CCCCCCeEEEEEEecCCCCcceE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNP-MGKHR---AY--LELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEF   86 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~---~~--~~v~~~P~p~~~~~~~--~~~~~~~~~L~W~~~~~~pi~~y   86 (152)
                      +..+.|.|..+..+|.|.|+|.|.|. .|...   ..  +.|..+|.........  .......+.|.|.+.+.++. .+
T Consensus       139 ~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p-~i  217 (265)
T 2oz4_A          139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-EL  217 (265)
T ss_dssp             SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC-EE
T ss_pred             CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCC-eE
Confidence            35577999999999999999999964 48765   33  4444444321110000  01235788888887665432 23


Q ss_pred             EEEEEECCCCCC-Cc-ceEEecCCCeEEEEEEEEcCCCCC
Q psy15979         87 KIKYRKIPGNEP-SP-MSNQLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        87 ~~~~r~~~~~~~-~~-~~~~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .| ++....... .. .....++.+.|.|  .|.|.+|..
T Consensus       218 ~W-~~~~~~~~~~g~~~~v~~~d~G~Y~C--~a~N~~G~~  254 (265)
T 2oz4_A          218 KC-LKDGTFPLPIGESVTVTRDLEGTYLC--RARSTQGEV  254 (265)
T ss_dssp             EE-EETTTEECCTTSCEECCGGGCEEEEE--EEEETTEEE
T ss_pred             EE-EECCcccCCCCcEEEeehhhCeEEEE--EEECCCCcE
Confidence            33 333210001 11 2234556899988  779999865

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=4.9e-07  Score=59.41  Aligned_cols=67  Identities=13%  Similarity=0.217  Sum_probs=49.5

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC-------C-CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-------P-SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-------~-~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      ...+++.|.|..+. .++..|.|+|+......       . ....+.   |.+++.|+|+|.|.|..|.|.++.....+
T Consensus        19 ~t~~si~lsW~~p~-g~i~~Y~v~y~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~g~~s~~~~~T   96 (105)
T 2ekj_A           19 ETPDSLQVSWTPPL-GRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQT   96 (105)
T ss_dssp             EETTEEEEEEECCS-SCCSBBCBBCCCTTSCSCCCCBCCBTTSSEEEECSCCSSCCCBCBBCBBCSSCBCCCBCCBCCC
T ss_pred             CCCCEEEEEEeCCC-CcceEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEeCCccCCccccEEEc
Confidence            34689999999874 57889999997754321       1 113444   66699999999999999999988654433

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=98.24  E-value=4.4e-06  Score=59.20  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=54.0

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVR  118 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~  118 (152)
                      ++|.||..... .....+++.|+|..+.   ..++..|.++|+......+.       ...+   .|.+++.|.|+|.|.
T Consensus         4 ~~P~~P~~l~~-~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~   82 (197)
T 3lpw_A            4 DTPGPPQDLKV-KEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAE   82 (197)
T ss_dssp             CSCCCCEEEEE-EEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEEECSSEEEECCCCTTCEEEEEEEEE
T ss_pred             CCCCCCCCcEE-EEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecCCCccEEEEcCCCCCCEEEEEEEEE
Confidence            46766643321 1235689999999853   24689999999987644321       1333   466699999999999


Q ss_pred             cCCCCCCCCCC
Q psy15979        119 KRFDRGNSTNG  129 (152)
Q Consensus       119 N~~G~g~~s~~  129 (152)
                      |..|.|.++..
T Consensus        83 ~~~g~~~~s~~   93 (197)
T 3lpw_A           83 NEYGIGLPAET   93 (197)
T ss_dssp             ETTEECCCEEC
T ss_pred             cCccccCCCCC
Confidence            99999987754

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.23  E-value=5.3e-06  Score=61.34  Aligned_cols=75  Identities=11%  Similarity=0.186  Sum_probs=48.6

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCC---c----eEEEEEEecC---CCCceee-cCCC--C-CCCCe
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG---K----HRAYLELSGK---PNPAIFR-SHPQ--G-RLPNS   70 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G---~----~~~~~~v~~~---P~p~~~~-~~~~--~-~~~~~   70 (152)
                      .+|+.+.. .+...+|.|.+++.+|+|.|.|.+.|..|   .    ....+.|...   +.||.+. ..+.  . .....
T Consensus        59 ~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~  138 (238)
T 1bec_A           59 PDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQK  138 (238)
T ss_dssp             CTTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCS
T ss_pred             cceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCc
Confidence            46777753 24567899999999999999999999752   1    1123555542   2344332 2221  1 13578


Q ss_pred             EEEEEEecCC
Q psy15979         71 YNITWMVSSY   80 (152)
Q Consensus        71 ~~L~W~~~~~   80 (152)
                      +.|.|.+.+.
T Consensus       139 ~~L~C~~~g~  148 (238)
T 1bec_A          139 ATLVCLARGF  148 (238)
T ss_dssp             CSEEEEEEEE
T ss_pred             eEEEEEEeeE
Confidence            8999998764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.23  E-value=2.8e-05  Score=57.56  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=48.5

Q ss_pred             CCCcEEEEEcC--CEeEEEEceeCCCCCEEEEEEEEcCC-Cc--------eEEEEEEecCC-------CCceeecCCCC-
Q psy15979          5 TTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPM-GK--------HRAYLELSGKP-------NPAIFRSHPQG-   65 (152)
Q Consensus         5 ~~~r~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~-G~--------~~~~~~v~~~P-------~p~~~~~~~~~-   65 (152)
                      .++|+.+..+.  ...+|.|.+++.+|+|.|.|.+.|.. |.        ....+.|...|       .|..+...... 
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~  144 (242)
T 1hxm_B           65 PSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAET  144 (242)
T ss_dssp             CTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGG
T ss_pred             cCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhc
Confidence            35788886432  57889999999999999999999863 11        11245555432       22222110011 


Q ss_pred             CCCCeEEEEEEecCCCC
Q psy15979         66 RLPNSYNITWMVSSYTP   82 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~p   82 (152)
                      .....+.|.|.+.+..|
T Consensus       145 ~~g~~v~L~C~~~g~~P  161 (242)
T 1hxm_B          145 KLQKAGTYLCLLEKFFP  161 (242)
T ss_dssp             GSSSCEEEEEEEEEESS
T ss_pred             ccCCCceEEEEEeeEEC
Confidence            12567899999876544

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=98.22  E-value=6.5e-06  Score=60.77  Aligned_cols=78  Identities=12%  Similarity=0.069  Sum_probs=54.3

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCC-------CcceEE---ecCCCeEEEEEEEEcCCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP-------SPMSNQ---LTGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~G  122 (152)
                      +|.||..... .....+++.|+|..+. .++..|.++|+.......       ...++.   |.+++.|+|+|.|.|..|
T Consensus         5 p~~~P~~l~~-~~~~~~si~l~W~~p~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   82 (234)
T 3f7q_A            5 DLGAPQNPNA-KAAGSRKIHFNWLPPS-GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG   82 (234)
T ss_dssp             CCCCCEEEEE-EECSSSCEEEEEECCS-SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCCCcceEE-EEcCCCEEEEEEECCC-CccceEEEEEEECCCCccceEEEcCCccEEEECCCCCCCEEEEEEEEEeCCC
Confidence            4555543221 1234679999999873 478999999998754321       113343   566999999999999999


Q ss_pred             CCCCCCCccc
Q psy15979        123 RGNSTNGGLI  132 (152)
Q Consensus       123 ~g~~s~~~~~  132 (152)
                      .|.++....+
T Consensus        83 ~g~~s~~~~~   92 (234)
T 3f7q_A           83 EGPYSSLVSC   92 (234)
T ss_dssp             ECCCCCCEEE
T ss_pred             cCCCCCeEEE
Confidence            9988865544

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*

Probab=98.22  E-value=5e-06  Score=55.73  Aligned_cols=69  Identities=16%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcC
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKR  120 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~  120 (152)
                      |.|.||..... .....+++.|+|..+. .++..|.|.|+......        ....++.   |.+++.|.|+|.|.|.
T Consensus         2 GvP~~P~~L~v-~~~t~~Sv~lsW~~p~-g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A~~~   79 (114)
T 3qwq_B            2 GVSDVPRDLEV-VAATPTSLLISWDSGR-GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTD   79 (114)
T ss_dssp             ---CCCEEEEE-EEEETTEEEEEEECCS-CCCSEEEEEEEESSCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEEE
T ss_pred             CCCCCCCceEE-EecCCCEEEEEEcCCc-CcccEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEEC
Confidence            56766654321 1235689999999764 57899999999875431        1123444   5569999999999999


Q ss_pred             CC
Q psy15979        121 FD  122 (152)
Q Consensus       121 ~G  122 (152)
                      .|
T Consensus        80 ~G   81 (114)
T 3qwq_B           80 HK   81 (114)
T ss_dssp             EE
T ss_pred             Cc
Confidence            99

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.22  E-value=9.1e-07  Score=64.05  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=32.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~   57 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.  .+|.||
T Consensus       184 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             ccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCC
Confidence            35799999999999999999999999988865554  555554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.22  E-value=4.2e-06  Score=64.28  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=59.4

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCce---EEEEEEec-CCCCceeecCC-CCCCCCeEEEEEEecCC-CCcceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSG-KPNPAIFRSHP-QGRLPNSYNITWMVSSY-TPLEEFKIKYR   91 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~~~v~~-~P~p~~~~~~~-~~~~~~~~~L~W~~~~~-~pi~~y~~~~r   91 (152)
                      +.|.|.....+|.|.|+|+|.|..|..   .....+.. ...||.+...+ .......+.|.|.+.+. ++...+.|. +
T Consensus       180 s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~~p~~~~v~W~-k  258 (327)
T 2wng_A          180 STAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWL-E  258 (327)
T ss_dssp             EEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEEBSSCEEEEEE-E
T ss_pred             EEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccccCCCcEEEEE-E
Confidence            458888777778899999999998873   33444432 23333333211 12346789999998764 332244443 2


Q ss_pred             ECC---C---CC---CCc------ceEEe-----cCCCeEEEEEEEEcCCCCC
Q psy15979         92 KIP---G---NE---PSP------MSNQL-----TGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        92 ~~~---~---~~---~~~------~~~~L-----~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .-.   .   ..   ..+      ..+.|     ++.+.|.|  .|.|..|..
T Consensus       259 ~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C--~a~N~~~~~  309 (327)
T 2wng_A          259 NGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTC--QVEHDGQPA  309 (327)
T ss_dssp             TTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEE--EEEETTCCC
T ss_pred             CCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEE--EEEeCCCCC
Confidence            110   0   00   011      11223     35899999  679998754

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.22  E-value=3.1e-06  Score=59.00  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=49.3

Q ss_pred             CCCCeEEEEEEecCCC---------C--cceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCC
Q psy15979         66 RLPNSYNITWMVSSYT---------P--LEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~---------p--i~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..++++.|+|..+...         .  +..|.+.|+........       ..++   .|.+++.|.|||.|+|..|.|
T Consensus        29 i~s~S~~LsW~~P~~~~~g~~~~~g~~~i~~Yev~~~~k~~~~~~~~~~~g~~ts~~v~~L~P~T~Y~~rV~A~n~~G~G  108 (137)
T 1wk0_A           29 IQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKG  108 (137)
T ss_dssp             CCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEECEEEEEEETTEEC
T ss_pred             EccCEEEEEECCCCCccCccccccccCccEEEEEEEEecCCCCceEEEEecCccEEEEcCCCCCCEEEEEEEEEeCCCcC
Confidence            4579999999975322         1  57899988765432211       1233   366699999999999999999


Q ss_pred             CCCCCccccc
Q psy15979        125 NSTNGGLIVP  134 (152)
Q Consensus       125 ~~s~~~~~~~  134 (152)
                      .+|....|.+
T Consensus       109 ~~S~~~~f~T  118 (137)
T 1wk0_A          109 TPSEAEIFTT  118 (137)
T ss_dssp             CCCCCCCEEC
T ss_pred             CCCCCEEEEC
Confidence            9998775533

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=98.21  E-value=3.1e-06  Score=57.28  Aligned_cols=62  Identities=18%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|.|..+.. .+..|.|.|+......        ....++.   |.+++.|.|+|.|.|..|.|.++.
T Consensus        40 ~t~~Si~lsW~~p~~-~i~~Y~V~y~~~~~~~~~~~~~v~~~~t~~~l~gL~P~t~Y~~~V~A~~~~G~g~~Ss  112 (121)
T 2ocf_D           40 ATPTSLLISWDAPAV-TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGS  112 (121)
T ss_dssp             ECSSCEEEEEECCSS-CCCEEEEEEEETTTCSCBEEEEEETTCCEEEECCCCTTCEEEEEEEEECCHHHHHHSC
T ss_pred             cCCCEEEEEEcCCCC-CCcEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEeCCCccCCCC
Confidence            356899999997653 5889999999875432        1113344   566999999999999999987653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.21  E-value=6.2e-07  Score=57.95  Aligned_cols=29  Identities=28%  Similarity=0.465  Sum_probs=26.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus        75 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  103 (112)
T 3so5_A           75 TTILRLRNVEFTSEGXYQCVISNHFGSSY  103 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEEEEeccccccCCeEEEEEEeCCCcEE
Confidence            47899999999999999999999999843

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.21  E-value=1.1e-06  Score=58.44  Aligned_cols=51  Identities=20%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCc--eEEEEEEecCCCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP   56 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~--~~~~~~v~~~P~p   56 (152)
                      .+|+.+..  .....+|.|.+++.+|+|.|.|.+.|..|.  ....+.|.+.+.|
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             TTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             cCcEEEecCCcCCeEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            35777642  234568999999999999999999998875  3455565544433

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C*

Probab=98.21  E-value=6.4e-05  Score=54.58  Aligned_cols=106  Identities=12%  Similarity=0.055  Sum_probs=65.9

Q ss_pred             CCEEEEEEEEcCCCceEEE---EEEe--cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCCC----
Q psy15979         29 DFGNYSCEATNPMGKHRAY---LELS--GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS----   99 (152)
Q Consensus        29 D~G~YtC~A~N~~G~~~~~---~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~----   99 (152)
                      ....|...+.|..|.....   +.+.  ++|.||....... .....+.|+|..+.....+.|.|+|+......+.    
T Consensus        69 ~~~~~~i~v~~~~g~~~s~~~~~~~~~iVkP~pP~~l~~~~-~~~~~l~l~W~~p~~~~~l~yev~y~~~~~~~w~~~~~  147 (199)
T 2b5i_C           69 LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHK-LSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSV  147 (199)
T ss_dssp             TTSCEEEEEECSSCTTCEEEEEECGGGSEECCCCEEEEEEE-EETTEEEEEEECSSCSTTCEEEEEEEETTCSSCEEEEE
T ss_pred             cceEEEEEEEeCCcceecceEEEchHHceecCCCcEEEEEE-CCCCCEEEEECCCCCCCceEEEEEEeecCCcccEEEec
Confidence            3446777777777765442   2222  4688876442111 1236899999987533456899999987543321    


Q ss_pred             --cceE---EecCCCeEEEEEEEEcCCC------CCCCCCCcccccc
Q psy15979        100 --PMSN---QLTGTNQYQNRRLVRKRFD------RGNSTNGGLIVPK  135 (152)
Q Consensus       100 --~~~~---~L~~~~~Y~~rV~A~N~~G------~g~~s~~~~~~~~  135 (152)
                        ...+   .|.+++.|+|||+|+...|      ||+.|....+..+
T Consensus       148 ~~~~~~~l~~l~p~~~Y~vqVR~~~~~~~~~~g~WSeWS~~~~~~t~  194 (199)
T 2b5i_C          148 DYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSN  194 (199)
T ss_dssp             CSSCEEEECSCCTTSCEEEEEEEECCSSSCCCCCCCCCCCCEEC---
T ss_pred             cCceEEEecCCCCCcEEEEEEEEeccCCcCcCCeECCCCCCEEecCC
Confidence              1233   3566999999999998543      7777777666544

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.21  E-value=7.1e-06  Score=60.38  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCce---EEEEEEec-CCCCce-eecCCC--CCCCCeEEEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSG-KPNPAI-FRSHPQ--GRLPNSYNITWM   76 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~~~v~~-~P~p~~-~~~~~~--~~~~~~~~L~W~   76 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|.|.+.|..+..   ...+.|.. .+.+|. +...+.  ......+.|.|.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~  144 (227)
T 1mju_H           65 KNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCL  144 (227)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEE
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEE
Confidence            468888643  457789999999999999999999963211   12455554 223333 322211  123578899999


Q ss_pred             ecCC
Q psy15979         77 VSSY   80 (152)
Q Consensus        77 ~~~~   80 (152)
                      +.+.
T Consensus       145 ~~g~  148 (227)
T 1mju_H          145 VKGY  148 (227)
T ss_dssp             EEEE
T ss_pred             eecE
Confidence            8764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.20  E-value=5.9e-06  Score=65.69  Aligned_cols=83  Identities=14%  Similarity=0.223  Sum_probs=52.6

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC-----c--eEEEEEEecCC-CCce-eecCCC--CCCCCeEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----K--HRAYLELSGKP-NPAI-FRSHPQ--GRLPNSYN   72 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----~--~~~~~~v~~~P-~p~~-~~~~~~--~~~~~~~~   72 (152)
                      .+|+.+..+  +....|.|.+++.+|+|.|+|.|.|..|     .  ....+.|...+ .+|. +...+.  ......+.
T Consensus       283 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~  362 (438)
T 1qgc_4          283 KGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVT  362 (438)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEE
T ss_pred             CCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEE
Confidence            467877653  4567899999999999999999999544     1  12345555322 3333 222211  12468899


Q ss_pred             EEEEecCCCCcc-eEEE
Q psy15979         73 ITWMVSSYTPLE-EFKI   88 (152)
Q Consensus        73 L~W~~~~~~pi~-~y~~   88 (152)
                      |.|.+.+..|.. .+.|
T Consensus       363 L~C~~~g~~P~~~~v~W  379 (438)
T 1qgc_4          363 LGCLVKGYFPEPVTVTW  379 (438)
T ss_dssp             EEEEEESCBSSCCEEEE
T ss_pred             EEEEeccccCCCcEEEE
Confidence            999998763332 4444

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.20  E-value=9.7e-07  Score=62.32  Aligned_cols=41  Identities=29%  Similarity=0.457  Sum_probs=33.3

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      |..+.++.+...   +.|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus       141 ~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s  181 (192)
T 2iep_A          141 LRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLGTAYS  181 (192)
T ss_dssp             CCCCSSEEECTT---SCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             ccCCCcEEEecC---CcEEEecCChhhCEEEEEEEEcCCCcEEE
Confidence            455667766433   37999999999999999999999998854

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.20  E-value=2.1e-06  Score=58.52  Aligned_cols=49  Identities=22%  Similarity=0.309  Sum_probs=37.8

Q ss_pred             CCcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcCCCce------EEEEEEecCC
Q psy15979          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELSGKP   54 (152)
Q Consensus         6 ~~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~~~v~~~P   54 (152)
                      .+||.+.  ..+...+|+|.+++.+|+|.|.|.+.|..+..      .+.+.|..+|
T Consensus        61 ~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             -CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             CCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            3688886  34567899999999999999999999988765      2346666554

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.20  E-value=4.7e-06  Score=61.50  Aligned_cols=76  Identities=13%  Similarity=0.183  Sum_probs=48.4

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCc------eEEEEEEec---CCCCcee-ecCCCC---CCCCeEE
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGK------HRAYLELSG---KPNPAIF-RSHPQG---RLPNSYN   72 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~------~~~~~~v~~---~P~p~~~-~~~~~~---~~~~~~~   72 (152)
                      +|+.+.. .....+|.|.+++.+|+|.|.|.|.|..+.      ....+.|..   .+.+|.+ ...+..   .....+.
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~  144 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  144 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEE
Confidence            6787764 345778999999999999999999987542      112344443   2233332 222211   1147899


Q ss_pred             EEEEecCCCC
Q psy15979         73 ITWMVSSYTP   82 (152)
Q Consensus        73 L~W~~~~~~p   82 (152)
                      |.|.+.+..|
T Consensus       145 L~C~~~g~~p  154 (246)
T 4dzb_B          145 LVCLATGFYP  154 (246)
T ss_dssp             EEEEEEEEBS
T ss_pred             EEEEEccCcC
Confidence            9999876443

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.19  E-value=5.2e-06  Score=62.89  Aligned_cols=77  Identities=13%  Similarity=0.226  Sum_probs=48.7

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCC--------ceEEEEEEecC---CCCceeecC-CCC---CCCC
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG--------KHRAYLELSGK---PNPAIFRSH-PQG---RLPN   69 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G--------~~~~~~~v~~~---P~p~~~~~~-~~~---~~~~   69 (152)
                      .+|+.+.. .+...+|.|.+++.+|+|.|+|.|.|..|        .....+.|...   +.||.+... +..   ....
T Consensus        87 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~  166 (279)
T 2wbj_D           87 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQ  166 (279)
T ss_dssp             SSSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHS
T ss_pred             CCcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCC
Confidence            46888875 35677999999999999999999999532        01124555442   234443321 111   0246


Q ss_pred             eEEEEEEecCCCC
Q psy15979         70 SYNITWMVSSYTP   82 (152)
Q Consensus        70 ~~~L~W~~~~~~p   82 (152)
                      .+.|.|.+.+..|
T Consensus       167 ~v~L~C~~~g~~P  179 (279)
T 2wbj_D          167 KATLVCLATGFYP  179 (279)
T ss_dssp             CCEEEEEEEEEBS
T ss_pred             ceEEEEEEeeEcC
Confidence            7889998876533

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.19  E-value=1.9e-06  Score=56.60  Aligned_cols=49  Identities=20%  Similarity=0.319  Sum_probs=36.4

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCC-C---ceEEEEEEecCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM-G---KHRAYLELSGKP   54 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G---~~~~~~~v~~~P   54 (152)
                      .+|+.+..  .....+|+|.+++.+|+|.|.|.+.|.. |   .....+.|.+.|
T Consensus        54 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           54 NGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             ETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             cCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEec
Confidence            46888763  3456789999999999999999999986 6   233456666555

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.19  E-value=2e-06  Score=67.47  Aligned_cols=48  Identities=27%  Similarity=0.278  Sum_probs=39.6

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      |..++++.+..   .+.|.|.+++.+|+|.|+|+|.|.+|.+++.+.|...
T Consensus       353 ~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          353 VIPSDYFQIVG---GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             CCCSSSEEEET---TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CCCCCcEEEec---CccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            44556676653   3579999999999999999999999999998887654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.18  E-value=9.6e-07  Score=65.77  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCCc
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p~   57 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|.....+.|.....||
T Consensus       199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p  240 (268)
T 3mj6_A          199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF  240 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC--
T ss_pred             CeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCC
Confidence            466899999999999999999999999988887776644333

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=7e-07  Score=59.23  Aligned_cols=46  Identities=30%  Similarity=0.436  Sum_probs=33.9

Q ss_pred             cccCCCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..++|+.+. ..+..+.|.|.+++.+|+|.|+|.+    |.....+.|.
T Consensus        53 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~L~   99 (115)
T 2cr6_A           53 PLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALR   99 (115)
T ss_dssp             EECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEEEE
T ss_pred             ECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEEEE
Confidence            45666777776 3466778999999999999999994    5555544444

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.16  E-value=3e-06  Score=63.73  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|....+..|.
T Consensus       240 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  275 (289)
T 3mjg_X          240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN  275 (289)
T ss_dssp             EEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEE
Confidence            457899999999999999999999999999876665

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.16  E-value=2.4e-06  Score=55.98  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      .+|+.+...+...+|+|.+++.+|+|.|.|.|.|..
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           59 PSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNEY   94 (108)
T ss_dssp             CTTEEEEESSSEEEEEECSCCTTCCSEEEEEECSSS
T ss_pred             CceEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            468888766677899999999999999999999963

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.16  E-value=1.3e-05  Score=59.73  Aligned_cols=28  Identities=18%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ....+|.|.+++.+|+|.|.|.|.|..|
T Consensus        76 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           76 RKNLRMILRNLIENDSGVYYCATWDQNY  103 (259)
T ss_dssp             -CCCEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             CCeEEEEECCCCcccCEEEEEEEeeCCc
Confidence            3456799999999999999999999877

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=98.15  E-value=1.3e-05  Score=52.18  Aligned_cols=57  Identities=19%  Similarity=0.263  Sum_probs=43.4

Q ss_pred             CCCeEEEEEEecC-CCCcceEEEEEEECCCCC-C-------CcceEE---ecCCCeEEEEEEEEcCCCC
Q psy15979         67 LPNSYNITWMVSS-YTPLEEFKIKYRKIPGNE-P-------SPMSNQ---LTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        67 ~~~~~~L~W~~~~-~~pi~~y~~~~r~~~~~~-~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~  123 (152)
                      ..+++.|+|..+. ..++..|.|.|+...... .       ...++.   |.+++.|.|+|.|.|..|.
T Consensus        17 t~~Sv~l~W~~p~~~~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~~~~~~   85 (101)
T 3k2m_C           17 TPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSA   85 (101)
T ss_dssp             ETTEEEEEECCCCTTSCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEEECTT
T ss_pred             CCCEEEEEecCCCCCCceeeEEEEEEECCCCCccEEEEcCCCccEEEECCCCCCCEEEEEEEEEeCCcc
Confidence            5689999999764 257899999999865421 1       113444   5669999999999999999

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.14  E-value=4.1e-06  Score=62.78  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCC--ce--EEEEEEec---CCCCce-eecCCCC---CCCCeEEEE
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG--KH--RAYLELSG---KPNPAI-FRSHPQG---RLPNSYNIT   74 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G--~~--~~~~~v~~---~P~p~~-~~~~~~~---~~~~~~~L~   74 (152)
                      +|+.+.. .....+|.|.+++.+|+|.|.|.+.|..+  ..  ...+.|..   .+.+|. ....+..   .....+.|.
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~  167 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV  167 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence            7888864 34467899999999999999999998422  11  11344443   222333 2221111   114789999


Q ss_pred             EEecCCCC
Q psy15979         75 WMVSSYTP   82 (152)
Q Consensus        75 W~~~~~~p   82 (152)
                      |.+.+..|
T Consensus       168 C~~~g~~p  175 (268)
T 3pl6_D          168 CLATGFYP  175 (268)
T ss_dssp             EEEEEEBS
T ss_pred             EEECcccC
Confidence            99876443

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.13  E-value=1.1e-05  Score=64.90  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=51.0

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC------------c--eEEEEEEecCC-CCce-eecCC--CC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG------------K--HRAYLELSGKP-NPAI-FRSHP--QG   65 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G------------~--~~~~~~v~~~P-~p~~-~~~~~--~~   65 (152)
                      .+|+.+..+  +....|.|.+++.+|+|.|+|.|.|..|            .  ....+.|...+ .+|. +...+  ..
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~  144 (457)
T 1hzh_H           65 QDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKS  144 (457)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCC
T ss_pred             cCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccc
Confidence            468887653  4567899999999999999999999876            1  22345554422 2333 32221  11


Q ss_pred             CCCCeEEEEEEecCCCC
Q psy15979         66 RLPNSYNITWMVSSYTP   82 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~p   82 (152)
                      .....+.|.|.+.+..|
T Consensus       145 ~~g~~v~L~C~~~g~~P  161 (457)
T 1hzh_H          145 TSGGTAALGCLVKDYFP  161 (457)
T ss_dssp             CTTCCEEEEEEEESBBS
T ss_pred             cCCCcEEEEEEEeEEeC
Confidence            24678999999876533

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.13  E-value=1.7e-06  Score=56.61  Aligned_cols=46  Identities=22%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CCcEEEEEcC-----CEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEe
Q psy15979          6 TERRIMETRG-----SRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~-----~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~   51 (152)
                      .+|+.+....     ...+|.|.+++.+|+|.|.|.+.| ..|.....+.|.
T Consensus        62 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~  113 (118)
T 3udw_C           62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR  113 (118)
T ss_dssp             CSSEEETTCCTTSCCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCcEEEecccccCCCCCcEEEEeecChHHCeEEEEEEEECCCCCccceEEEE
Confidence            4566664321     166899999999999999999999 788776655554

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=98.13  E-value=4.6e-06  Score=53.82  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC-C-------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-P-------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-~-------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ..+++.|+|..+. .++..|.+.|+...... .       ...++.   |.+++.|.|+|.|.|..|.|.++.
T Consensus        17 t~~Si~lsW~~p~-~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~v~V~A~~~~G~gp~ss   88 (97)
T 3qht_C           17 TPTSLLISWDASS-SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAYYSYYDLYYSY   88 (97)
T ss_dssp             ETTEEEEECCCCC-SSCCEEEEEEEESSSCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEEEETTEEEEC
T ss_pred             CCCEEEEEEeCCC-CCCCEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEEeCCccCCCCC
Confidence            5689999999764 47899999999865432 1       113444   566999999999999999996543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.13  E-value=2.5e-06  Score=62.39  Aligned_cols=42  Identities=31%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCc
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~   57 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.  ++|.++
T Consensus       180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-------
T ss_pred             CceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCC
Confidence            456899999999999999999999999998877765  444443

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1

Probab=98.11  E-value=5.5e-06  Score=52.37  Aligned_cols=64  Identities=9%  Similarity=0.179  Sum_probs=43.5

Q ss_pred             CCCeEEEEEEecC-CCCcceEEEEEEECCCC--CCCcceE---EecCCCeEEEEEEEEcCCCC-CCCCCCccc
Q psy15979         67 LPNSYNITWMVSS-YTPLEEFKIKYRKIPGN--EPSPMSN---QLTGTNQYQNRRLVRKRFDR-GNSTNGGLI  132 (152)
Q Consensus        67 ~~~~~~L~W~~~~-~~pi~~y~~~~r~~~~~--~~~~~~~---~L~~~~~Y~~rV~A~N~~G~-g~~s~~~~~  132 (152)
                      ...++.|.|..+. ...+..|.++ +. ...  .....++   .|.+++.|.|+|.|.|..|. |.+++...+
T Consensus        16 ~~~sv~L~W~~~~~~~~i~~Y~v~-~~-~~~~~~~~~~~~~~~~L~~~t~Y~~~V~A~n~~G~~s~~S~~v~v   86 (88)
T 1k85_A           16 TTSSITLSWTASTDNVGVTGYDVY-NG-TALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSV   86 (88)
T ss_dssp             CSSCEEEEEECCSCCSSEEEEEEE-ES-SSEEEEESSSEEEECCCCSSCEEEEEEEEEETTTEECCCCCCEEE
T ss_pred             cCCEEEEEECCCCCCCCccEEEEE-EC-CEEEeecCCCEEEeCCCCCCCEEEEEEEEEeCCCCcCCCCCCEEE
Confidence            4688999999754 2357889986 32 110  0112344   36669999999999999998 777765543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.11  E-value=2.1e-06  Score=69.68  Aligned_cols=43  Identities=33%  Similarity=0.349  Sum_probs=35.3

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .|+.+..   .++|.|.+++.+|+|.|+|+|+|.+|.+++++.|.+
T Consensus       399 ~~~~~~~---~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v  441 (452)
T 3zyi_A          399 PRISVLN---DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV  441 (452)
T ss_dssp             SSCEECT---TSCEECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC
T ss_pred             CCEEECC---CCeEEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence            3555543   346999999999999999999999999999766654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.11  E-value=6.2e-06  Score=63.53  Aligned_cols=65  Identities=11%  Similarity=0.117  Sum_probs=42.9

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec---CCCCceeec-C-C-CCCCCCeEEEEEEecCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG---KPNPAIFRS-H-P-QGRLPNSYNITWMVSSYT   81 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~---~P~p~~~~~-~-~-~~~~~~~~~L~W~~~~~~   81 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..+.....+.|..   ...+|.+.. . + .......+.|.|.+.+..
T Consensus       177 ~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~  247 (323)
T 2wqr_A          177 TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFM  247 (323)
T ss_dssp             EEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEB
T ss_pred             EEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeee
Confidence            457999999999999999999999765444444432   223333221 1 1 112368899999987643

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.10  E-value=1.2e-05  Score=58.41  Aligned_cols=65  Identities=20%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      +.+++.|+|..+. ..+..|.+.|.......        ....++.   |.+++.|.|+|.|.|..|.|.+|....+
T Consensus       116 t~~si~l~W~~p~-~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~gL~p~t~Y~~~V~A~~~~G~g~~S~~v~~  191 (195)
T 2qbw_A          116 TPTSLLISWDASY-YGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSPISI  191 (195)
T ss_dssp             ETTEEEEECCCCC-SSCSEEEEEEEETTCCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEESSTTSSCBCCCEEE
T ss_pred             CCCEEEEEEeCCC-CCccEEEEEEEECCCCCcceEEEeCCCCCEEEeCCCCCCCEEEEEEEEEeCCccCCCCCCEEE
Confidence            4689999999764 46889999998765432        1113444   5669999999999999999998776544

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.10  E-value=2.6e-06  Score=61.38  Aligned_cols=40  Identities=30%  Similarity=0.443  Sum_probs=33.0

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      .+.++.+...   +.|.|.+++.+|+|.|+|.|+|.+|..++.
T Consensus       160 ~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  199 (217)
T 2vr9_A          160 ASSRVRIVDG---GNLLISNVEPIDEGNYKCIAQNLVGTRESS  199 (217)
T ss_dssp             CCCSEEEETT---TEEEESSCCSTTCEEEEEEEEETTEEEECC
T ss_pred             cCCcEEecCC---CcEEEeeCCHHHCeEEEEEEEcccceeccc
Confidence            3456666533   479999999999999999999999998874

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.10  E-value=1.8e-06  Score=58.86  Aligned_cols=30  Identities=30%  Similarity=0.579  Sum_probs=27.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|.+.
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           88 AASTISIDTLVEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECCTTSSS
T ss_pred             cceEEEECCCCcccCEEEEEEEEecCCccc
Confidence            457899999999999999999999999974

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.10  E-value=2.6e-06  Score=60.19  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=32.9

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP   56 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p   56 (152)
                      ...|.|.+++.+|+|.|+|.|.|..|.....+.|.  +.|.+
T Consensus       142 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          142 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred             ceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence            46899999999999999999999999988865554  55543

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.09  E-value=1.9e-05  Score=59.69  Aligned_cols=75  Identities=15%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCce-----EEEEEEec-CCCCce-eecCCC--CCCCCeEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSG-KPNPAI-FRSHPQ--GRLPNSYNIT   74 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~~~v~~-~P~p~~-~~~~~~--~~~~~~~~L~   74 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..+..     ...+.|.. .+.+|. ....+.  ......+.|.
T Consensus        71 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~  150 (261)
T 2xqy_G           71 KDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLG  150 (261)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEE
T ss_pred             CCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEE
Confidence            468888643  356789999999999999999999965311     12455554 223333 222221  1235789999


Q ss_pred             EEecCC
Q psy15979         75 WMVSSY   80 (152)
Q Consensus        75 W~~~~~   80 (152)
                      |.+.+.
T Consensus       151 C~~~g~  156 (261)
T 2xqy_G          151 CLVKGY  156 (261)
T ss_dssp             EEEEEE
T ss_pred             EEEEeE
Confidence            998754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.06  E-value=4e-06  Score=71.22  Aligned_cols=110  Identities=19%  Similarity=0.196  Sum_probs=32.2

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecC--C-CCCCCCeEEEEEEecCCCCcceEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSH--P-QGRLPNSYNITWMVSSYTPLEEFKIKY   90 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~--~-~~~~~~~~~L~W~~~~~~pi~~y~~~~   90 (152)
                      ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.  .+|........  . .......+.|.|.+.++++ ..+.| +
T Consensus       288 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W-~  365 (772)
T 3v2a_R          288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP-PEIKW-Y  365 (772)
T ss_dssp             EEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC--------------------------------------
T ss_pred             EEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCC-CeEEE-E
Confidence            356799999999999999999999999877655544  44432111100  0 1123577888998876433 23443 3


Q ss_pred             EECCC-CC---C-CcceE-----EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         91 RKIPG-NE---P-SPMSN-----QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        91 r~~~~-~~---~-~~~~~-----~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      +.... ..   . ....+     ...+.+.|.|  .|.|..|....+..
T Consensus       366 ~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~s~~  412 (772)
T 3v2a_R          366 KNGIPLESNHTIKAGHVLTIMEVSERDTGNYTV--ILTNPISKEKQSHV  412 (772)
T ss_dssp             -------------------------------------------------
T ss_pred             ECCEeCCCCceEccceeEEEecCChhcCceEEE--EEEECCcCeEEEEE
Confidence            22110 00   0 00112     3344788988  67899997765443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.06  E-value=6.4e-06  Score=58.96  Aligned_cols=27  Identities=26%  Similarity=0.238  Sum_probs=24.9

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ....|.|.+++.+|+|.|+|.|.|..+
T Consensus       155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          155 SRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             ceeEEEecccCcccCeEEEEEEEeCCC
Confidence            457899999999999999999999876

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.06  E-value=9.5e-06  Score=61.45  Aligned_cols=37  Identities=16%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..|
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           65 KGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTY  103 (257)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSS
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCC
Confidence            468888653  4567899999999999999999999876

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.05  E-value=1.9e-05  Score=58.34  Aligned_cols=75  Identities=13%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE--cCCCc------eEEEEEEec-CCCCceee-cCCC--CCCC-Ce
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT--NPMGK------HRAYLELSG-KPNPAIFR-SHPQ--GRLP-NS   70 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~--N~~G~------~~~~~~v~~-~P~p~~~~-~~~~--~~~~-~~   70 (152)
                      .+|+.+..+  +...+|+|.+++.+|+|.|.|.+.  |..|.      ....+.|.. .+.+|... ..+.  .... ..
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~  143 (232)
T 1dn0_B           64 KSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSS  143 (232)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCS
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCc
Confidence            478888642  356789999999999999999999  43121      122455554 33333322 1111  1134 78


Q ss_pred             EEEEEEecCC
Q psy15979         71 YNITWMVSSY   80 (152)
Q Consensus        71 ~~L~W~~~~~   80 (152)
                      +.|.|.+.+.
T Consensus       144 v~L~C~~~g~  153 (232)
T 1dn0_B          144 VAVGCLAQDF  153 (232)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9999998765

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.05  E-value=2.4e-06  Score=55.41  Aligned_cols=44  Identities=25%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~   49 (152)
                      .+|+.+..  .....+|.|.+++.+|+|.|.|.+.|..|..+..+.
T Consensus        58 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~  103 (109)
T 2oyp_A           58 SSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLE  103 (109)
T ss_dssp             CTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEECCSSTTCCEEEE
T ss_pred             cceEEEccCccCCcEeEEEccCCChhCeEEEEEEEcCCcccceEEE
Confidence            35666542  223468999999999999999999998766555433

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=98.05  E-value=9.4e-05  Score=61.35  Aligned_cols=114  Identities=12%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe----cCCCCceeecCCCCCCCCeEEEEEEecCC--CCcceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS----GKPNPAIFRSHPQGRLPNSYNITWMVSSY--TPLEEFKIKYR   91 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~----~~P~p~~~~~~~~~~~~~~~~L~W~~~~~--~pi~~y~~~~r   91 (152)
                      ....|.++.....-..++.|.|.+|...+.+.+.    .+|.||...... .....++.|+|..+..  ..+..|.++|+
T Consensus       342 ~~C~~~~l~~~t~Y~f~V~A~N~lG~~~S~~~~~~~~~VkP~PP~nl~v~-~~~stsl~LsW~~P~~~~~~~L~YeVrYr  420 (483)
T 3e0g_A          342 YQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVK-DINSTAVKLSWHLPGNFAKINFLCEIEIK  420 (483)
T ss_dssp             EEEEEECCTTCCCEEEEEEEECSSCEEEEEEEECGGGGBCCCCCEEEEEC-CSSSSSCCEEEECCSCCTTSBCCCEEEEE
T ss_pred             EEEEEccCCCCcEEEEEEEEEeCCCCcccceEEEeccccCCCCCeeeEEE-EecCCeEEEEECCCCCCCCceEEEEEEEE
Confidence            3466777665555566789999999887764443    567777644321 2246789999998643  34678999999


Q ss_pred             ECCCCC-CC--------cc--eE---EecCCCeEEEEEEEEcCCC---CCCCCCCcccc
Q psy15979         92 KIPGNE-PS--------PM--SN---QLTGTNQYQNRRLVRKRFD---RGNSTNGGLIV  133 (152)
Q Consensus        92 ~~~~~~-~~--------~~--~~---~L~~~~~Y~~rV~A~N~~G---~g~~s~~~~~~  133 (152)
                      ...... ..        ..  .+   .|.+++.|.|||+|+ ..|   ||+.|....+.
T Consensus       421 ~~~~~~~~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~  478 (483)
T 3e0g_A          421 KSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHL  478 (483)
T ss_dssp             CSSSCCCEEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCC
T ss_pred             ECCCCCceEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeE
Confidence            875432 00        11  22   466699999999999 556   47877766443

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B*

Probab=98.05  E-value=6.6e-05  Score=56.28  Aligned_cols=101  Identities=15%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             CCceEEE---EEEe--cCCCCceeecCCCCCCCCeEEEEEEecCC----CCcceEEEEEEECCC-CCCC-----c--ceE
Q psy15979         41 MGKHRAY---LELS--GKPNPAIFRSHPQGRLPNSYNITWMVSSY----TPLEEFKIKYRKIPG-NEPS-----P--MSN  103 (152)
Q Consensus        41 ~G~~~~~---~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~~----~pi~~y~~~~r~~~~-~~~~-----~--~~~  103 (152)
                      +|...+.   +.+.  ++|.||.............+.|+|..+..    .....|.++|+.... ..+.     .  ..+
T Consensus        95 lG~~~S~~~~f~l~~iVKPdPP~nLtv~~~~~~~~l~LsW~~P~~~~~~~~~L~YEVrYr~~~~~~~W~~v~~~~t~~~i  174 (223)
T 3up1_A           95 VGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTL  174 (223)
T ss_dssp             ETTEEEEEEEEEGGGSBCCCCCEEEEEEEETTTTEEEEEEECGGGGCSSSCCEEEEEEEEESSCSSCCEEEEESSSEEEE
T ss_pred             cCCceeccEEEEecceEEcCCCcceEEEEEcCCCCEEEEECCCCCCCCcceeEEEEEEEEeCCCCCceEEEEecCceeEE
Confidence            5665552   3332  67888875432111224678999998632    225789999998742 2221     1  123


Q ss_pred             ---EecCCCeEEEEEEEEcC-C---CCCCCCCCccc-cccccc-ccc
Q psy15979        104 ---QLTGTNQYQNRRLVRKR-F---DRGNSTNGGLI-VPKAKR-EGR  141 (152)
Q Consensus       104 ---~L~~~~~Y~~rV~A~N~-~---G~g~~s~~~~~-~~~~~~-~~~  141 (152)
                         .|.+++.|+|+|+|+.. .   +||+.|....+ ++.+++ .|+
T Consensus       175 ~l~~L~Pgt~Y~vqVR~r~~~~~~G~WSeWS~~~~~~T~~~~P~~g~  221 (223)
T 3up1_A          175 LQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSSGE  221 (223)
T ss_dssp             EGGGSCTTCEEEEEEEEEECSSCCBCCCCCCCCEEEECCCCC-----
T ss_pred             eccccCCCcEEEEEEEEeeCCCCCCCCCCCCCCeEEECCCCCCCcCC
Confidence               46679999999999985 2   48888887754 556666 554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.05  E-value=2.9e-06  Score=53.71  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=26.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus        49 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A           49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            45899999999999999999999999765

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=98.05  E-value=1.9e-05  Score=57.06  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=46.3

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCC-CC-------------------CcceE---EecCCCeEEEEEEEEcCC
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGN-EP-------------------SPMSN---QLTGTNQYQNRRLVRKRF  121 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~-~~-------------------~~~~~---~L~~~~~Y~~rV~A~N~~  121 (152)
                      ..+++.|+|..+.  +.++..|.|+|+..+.. .+                   ....+   .|.+++.|+|||.|.|..
T Consensus        14 ~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   93 (214)
T 2ibg_A           14 SDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSN   93 (214)
T ss_dssp             ETTEEEEEEEEECCSSCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTCEEEEEEEEEETT
T ss_pred             cCCEEEEEEECCCCCCCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCCEEEEEEEEEecC
Confidence            5689999999753  36899999999986431 10                   11233   356699999999999999


Q ss_pred             CCCCCCC
Q psy15979        122 DRGNSTN  128 (152)
Q Consensus       122 G~g~~s~  128 (152)
                      |.|.++.
T Consensus        94 g~~~~s~  100 (214)
T 2ibg_A           94 NDNKESN  100 (214)
T ss_dssp             SCEEECC
T ss_pred             CCCCCCC
Confidence            9987765

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.04  E-value=2.2e-05  Score=57.84  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=29.3

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  101 (230)
T 1ypz_F           65 YKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEG  101 (230)
T ss_dssp             SSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCT
T ss_pred             CCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECC
Confidence            578888643  25678999999999999999999985

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=2.7e-05  Score=50.85  Aligned_cols=60  Identities=10%  Similarity=0.150  Sum_probs=44.7

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ..+++.|+|..+..  +..|.|.|+......+        ...++.   |.+++.|.|+|.|.|..|.|+|..
T Consensus        21 ~~~sv~lsW~~p~~--~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~s~p~~   91 (104)
T 2dkm_A           21 TPRTVHLTWQPSAG--ATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARG   91 (104)
T ss_dssp             CSSEEEEECCCCSS--CSEEEEEEEESSSCCSSCCEEEEESSSEEEEESCCTTCCEEEEEEEECSSSBCCCEE
T ss_pred             CCCEEEEEEeCCCC--CCeEEEEEEECCCCCCcceEEEecCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEE
Confidence            46899999987654  3889999987654211        012443   566999999999999999988763

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.03  E-value=5.7e-06  Score=54.15  Aligned_cols=43  Identities=16%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|+.+..  .+.+|.|.+++.+|+|.|.|.+.|..|.....+.+.
T Consensus        60 ~r~~~~~--~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~  102 (110)
T 1ncn_A           60 GRTSFDS--DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQM  102 (110)
T ss_dssp             TSEEEET--TTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred             CcEEEEC--CCEEEEEcCCChHHCEEEEEEEEcCCCCceEEEEEE
Confidence            4666642  346899999999999999999999988877655443

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1

Probab=98.03  E-value=0.00021  Score=54.02  Aligned_cols=106  Identities=11%  Similarity=0.016  Sum_probs=67.2

Q ss_pred             CCCEEEEEEEEcCCCceEEE-EEE--e--cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCCC---
Q psy15979         28 SDFGNYSCEATNPMGKHRAY-LEL--S--GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS---   99 (152)
Q Consensus        28 ~D~G~YtC~A~N~~G~~~~~-~~v--~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~---   99 (152)
                      .....|+-.+.|..|..... ..+  .  ++|.||...... ......+.|+|..+.....+.|.|+|+......+.   
T Consensus       106 ~~~~~y~i~V~~~~g~~~s~~~~~~~~~iVkP~PP~nl~v~-~~~~~~l~l~W~~P~~~~~L~Yevry~~~~~~~W~~~~  184 (247)
T 2erj_C          106 HLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLH-KLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQS  184 (247)
T ss_dssp             CTTSCEEEEEECSSCTTCEEEEEECGGGSEECCCCEEEEEE-ESSSSCEEEEEECSSCCTTEEEEEEEECSSCSSCEEEE
T ss_pred             ceeeEEEEEEEECCCccccceEEEchhHeEEeCCCCeEEEE-ECCCCcEEEEECCCCCCCcEEEEEEEeeCCCCCCEEEe
Confidence            34456776677777765442 222  2  468887644211 11236899999987533446899999986543322   


Q ss_pred             ---cceE---EecCCCeEEEEEEEEcCCC------CCCCCCCccccc
Q psy15979        100 ---PMSN---QLTGTNQYQNRRLVRKRFD------RGNSTNGGLIVP  134 (152)
Q Consensus       100 ---~~~~---~L~~~~~Y~~rV~A~N~~G------~g~~s~~~~~~~  134 (152)
                         ...+   .|.+++.|+|||+|+...|      ||+.|....+..
T Consensus       185 ~~~~~~~~l~~L~p~~~Y~vqVR~k~~~~~~~~g~WSeWS~~~~~~t  231 (247)
T 2erj_C          185 VDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGS  231 (247)
T ss_dssp             ECSSCEEEESCCCTTSCEEEEEEEEECSSSCCCCCCCCCCCCEEECC
T ss_pred             cCCceEEEecCCCCCCEEEEEEEEEeCCCCCCCCccCCCCcCEEEEC
Confidence               1233   3566999999999999653      777777765543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.02  E-value=2.8e-05  Score=57.05  Aligned_cols=75  Identities=17%  Similarity=0.272  Sum_probs=47.1

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCC-----------CceEEEEEEe-cCCCCceee-cCCC--CCCCC
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM-----------GKHRAYLELS-GKPNPAIFR-SHPQ--GRLPN   69 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~-----------G~~~~~~~v~-~~P~p~~~~-~~~~--~~~~~   69 (152)
                      +|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..           |.. ..+.|. ..+.+|.+. ..+.  .....
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~-~~l~V~~~~~~~P~v~~~~~~~~~~~g~  148 (232)
T 3qhz_H           70 TRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRG-TLVTVSSASTKGPSVFPLAPSSKSTSGG  148 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCC-EEEEECSSCCBCCEEEEECC-------C
T ss_pred             CceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCC-eEEEEecCCCCCCEEEEecccccccCCC
Confidence            68887643  366789999999999999999999863           221 234454 233333333 2221  12357


Q ss_pred             eEEEEEEecCCCC
Q psy15979         70 SYNITWMVSSYTP   82 (152)
Q Consensus        70 ~~~L~W~~~~~~p   82 (152)
                      .+.|.|.+.+..|
T Consensus       149 ~v~L~C~~~~~~P  161 (232)
T 3qhz_H          149 TAALGCLVKDYFP  161 (232)
T ss_dssp             EEEEEEEEEEEBS
T ss_pred             cEEEEEEEeeEeC
Confidence            8999999876434

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.02  E-value=5.1e-06  Score=60.63  Aligned_cols=38  Identities=13%  Similarity=-0.023  Sum_probs=27.8

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +....+.+.+++.+|+|+|+|+|+|.+|..+.++.|..
T Consensus       174 g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v  211 (226)
T 4f80_A          174 GLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI  211 (226)
T ss_dssp             SCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECC
T ss_pred             CcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEE
Confidence            33455667789999999999999999999999877764

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=98.02  E-value=3.7e-05  Score=61.46  Aligned_cols=99  Identities=11%  Similarity=0.006  Sum_probs=49.4

Q ss_pred             CCEEEEEEEEcCCCceEEEEEEecCCCCceeecCCCCCCCCeEEEEEEecCC-----CCcceEEEEEEECCCCCCCc---
Q psy15979         29 DFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-----TPLEEFKIKYRKIPGNEPSP---  100 (152)
Q Consensus        29 D~G~YtC~A~N~~G~~~~~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~-----~pi~~y~~~~r~~~~~~~~~---  100 (152)
                      ..+.++-.+.|.+|.+.+.-+ ...|.||............++.|+|.++..     ..+..|.++|+..+...+..   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~~~~   86 (380)
T 3lb6_C            8 VGCLYTFLISTTFGCTSSSDT-EIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIIT   86 (380)
T ss_dssp             ------------------------CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEEEEE
T ss_pred             hhhhhhheeecccccccCCcc-cccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceEEEe
Confidence            456778889999997755322 234566554321111125889999998543     24789999999876433221   


Q ss_pred             ----ceEEecCCCeEEEEEEEEcC----CCCCCCCC
Q psy15979        101 ----MSNQLTGTNQYQNRRLVRKR----FDRGNSTN  128 (152)
Q Consensus       101 ----~~~~L~~~~~Y~~rV~A~N~----~G~g~~s~  128 (152)
                          ....+.....|+|||.|.|.    .|.|+++.
T Consensus        87 ~~~~~~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~  122 (380)
T 3lb6_C           87 KNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSS  122 (380)
T ss_dssp             SSSEEEEECCTTSCEEEEEEEECCHHHHSSSCCBCC
T ss_pred             ccEEEEEeecCCCceEEEEEeecCCcccCCccCccc
Confidence                12234448999999999987    88888774

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.02  E-value=1e-05  Score=58.41  Aligned_cols=39  Identities=26%  Similarity=0.311  Sum_probs=32.9

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      +..+.|.|.+++.+|+|.|+|+|.|.+|.....+.|...
T Consensus       167 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          167 GLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             SCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEe
Confidence            334568999999999999999999999999987666643

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.01  E-value=3.5e-06  Score=55.76  Aligned_cols=51  Identities=25%  Similarity=0.301  Sum_probs=37.3

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p   56 (152)
                      .+|+.+..  .....+|+|.+++.+|+|.|.|.+.+........+.|.+.|.+
T Consensus        60 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (115)
T 2or7_A           60 NSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPEL  112 (115)
T ss_dssp             STTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCTTSCEEEEEEEEEESCC
T ss_pred             CccEEEecCccCCeEEEEEccCCHHHCEEEEEEEECCCceeEEEEEEEEcCCC
Confidence            45776642  2345679999999999999999999876555666777665543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.00  E-value=4.7e-06  Score=59.23  Aligned_cols=35  Identities=6%  Similarity=0.018  Sum_probs=29.9

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|.|.++..+|+|.|+|+|+|..|..+..+.+.
T Consensus       174 ~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~  208 (218)
T 4frw_A          174 TSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHI  208 (218)
T ss_dssp             EEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             EEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEE
Confidence            45799999999999999999999999887655443

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=5.9e-06  Score=52.75  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=26.2

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|....
T Consensus        55 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~   85 (96)
T 2ens_A           55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQE   85 (96)
T ss_dssp             CCSEEEEESCCTTTCEEEECEECCSSCCCEE
T ss_pred             CCCEEEECCCCcccCEEEEEEEEeCCCCcEE
Confidence            3568999999999999999999997665443

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.00  E-value=7.8e-06  Score=54.65  Aligned_cols=48  Identities=19%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE-cCCCceEEEEEE--ecCCCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLEL--SGKPNP   56 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~~~v--~~~P~p   56 (152)
                      .+|+.+.   .+.+|+|.+++.+|+|.|+|.+. +..|..+..+.|  ..+|.|
T Consensus        62 ~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           62 KDRVAPG---PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA  112 (117)
T ss_dssp             TTTEEEC---STTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC---
T ss_pred             cCcEEeC---CceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCcc
Confidence            3577763   24589999999999999999864 567887775444  455544

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.00  E-value=5.7e-06  Score=54.61  Aligned_cols=37  Identities=32%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             CCcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          6 TERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         6 ~~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ++|+.+..   .....+|.|.+++.+|+|.|.|.+.|..|
T Consensus        56 ~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             ETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             CCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecCCC
Confidence            46777754   34667899999999999999999999876

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.00  E-value=3e-05  Score=62.12  Aligned_cols=75  Identities=16%  Similarity=0.267  Sum_probs=49.9

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCCCce-----EEEEEEec-CCC-CceeecCC--CCCCCCeEEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSG-KPN-PAIFRSHP--QGRLPNSYNIT   74 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~~~v~~-~P~-p~~~~~~~--~~~~~~~~~L~   74 (152)
                      .+|+.+..+  +...+|.|.+++.+|+|.|.|.|.|..|..     ...+.|.. .+. |..+...+  .......+.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  144 (444)
T 1igt_B           65 KGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLG  144 (444)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEE
Confidence            368888643  456789999999999999999999987652     12345543 222 33332221  11346789999


Q ss_pred             EEecCC
Q psy15979         75 WMVSSY   80 (152)
Q Consensus        75 W~~~~~   80 (152)
                      |.+.+.
T Consensus       145 C~~~g~  150 (444)
T 1igt_B          145 CLVKGY  150 (444)
T ss_dssp             EEEEEE
T ss_pred             EEEcce
Confidence            998764

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.00  E-value=3.9e-06  Score=59.33  Aligned_cols=37  Identities=32%  Similarity=0.379  Sum_probs=32.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ....|.|.+++.+|+|.|+|.|.|.+|.....+.|.+
T Consensus       163 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  199 (201)
T 3s97_C          163 SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV  199 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEE
Confidence            3468999999999999999999999999988776653

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.00  E-value=3.4e-06  Score=60.26  Aligned_cols=29  Identities=38%  Similarity=0.582  Sum_probs=26.8

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus       165 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s  193 (212)
T 2v9r_A          165 GKLMITYTRKSDAGKYVCVGTNMVGERES  193 (212)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CeEEEeeCCHhhCeeEEEEEecccCceec
Confidence            47999999999999999999999998765

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=97.99  E-value=5.7e-05  Score=55.87  Aligned_cols=82  Identities=9%  Similarity=0.035  Sum_probs=52.8

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecCCC---CcceEEEEEEECCCCCCC--------cceE---EecCCCeEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNEPS--------PMSN---QLTGTNQYQNRRLV  117 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~---pi~~y~~~~r~~~~~~~~--------~~~~---~L~~~~~Y~~rV~A  117 (152)
                      ++|.||.............+.|+|..+...   .+..|.++|+......+.        ...+   .|.+++.|.|+|+|
T Consensus       120 v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~~l~Yev~y~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~vqVRa  199 (227)
T 1eer_B          120 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA  199 (227)
T ss_dssp             EECCCCEEEEEEECSSTTCEEEEEECCSSCSCGGGEEEEEEEECCSSSCCCCEEEECTTCCEEEECCCCSSCEEEEEEEE
T ss_pred             EccCcCcceEEEEcCCCCeEEEEEcCCCCcccccceEEEEEEEcCCCCCcEEEEEEecCceEEEEcccCCCCeEEEEEEE
Confidence            457777644321111367899999986432   257899999976543221        1233   35669999999999


Q ss_pred             EcC----CC-CCCCCCCcccc
Q psy15979        118 RKR----FD-RGNSTNGGLIV  133 (152)
Q Consensus       118 ~N~----~G-~g~~s~~~~~~  133 (152)
                      ++.    .| ||+.|....+.
T Consensus       200 ~~~~~~~~g~wS~WS~~~~~~  220 (227)
T 1eer_B          200 RMAEPSFGGFWSEWSEPVSLL  220 (227)
T ss_dssp             EECTTTCCEECCCCCCCEEEE
T ss_pred             eECCCCCCCcCCCCCCCEEEE
Confidence            975    23 68888776543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.99  E-value=2.6e-06  Score=60.80  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEEe
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELS   51 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v~   51 (152)
                      ...+.|.|.+++.+|+|.|+|.|.|.+|....  .+.|.
T Consensus       166 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~  204 (212)
T 1f97_A          166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD  204 (212)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEE
T ss_pred             CCCceEEEEecChhhCcEEEEEEccccCCccccceEEEE
Confidence            34568999999999999999999999999833  34444

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.99  E-value=5e-06  Score=63.25  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.5

Q ss_pred             EeEEEEceeCCCC-CEEEEEEEEcCCCceEEEEEEecC
Q psy15979         17 RHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        17 ~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      .+.|.|.+++.+| +|.|+|.|.|.+|.+.+.+.|..+
T Consensus       276 ~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             EEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             EEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            4589999999999 999999999999999998887653

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.99  E-value=8.8e-06  Score=58.96  Aligned_cols=63  Identities=13%  Similarity=0.219  Sum_probs=42.4

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCce--EEEEEEe-cCCCCceeecCCC---CCCCCeEEEEEEecCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELS-GKPNPAIFRSHPQ---GRLPNSYNITWMVSSY   80 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~~~v~-~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~   80 (152)
                      +.|.|.+++.+|+|.|+|.|.|..|..  +..+.+. ....||.+...+.   ......+.|.|.+.+.
T Consensus        68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~  136 (207)
T 2vol_A           68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDF  136 (207)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEE
T ss_pred             EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeE
Confidence            579999999999999999999999964  3344331 2233443322111   1135789999998764

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=97.99  E-value=1.5e-05  Score=58.62  Aligned_cols=76  Identities=17%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCC----Cce--EEEEEEec---CCCCce-eecCCCC---CCCCeEE
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM----GKH--RAYLELSG---KPNPAI-FRSHPQG---RLPNSYN   72 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~----G~~--~~~~~v~~---~P~p~~-~~~~~~~---~~~~~~~   72 (152)
                      +|+.+.. .....+|.|.+++.+|+|.|.|.+.|..    +..  ...+.|..   .+.+|. ....+..   .....+.
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~  143 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  143 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceE
Confidence            7888864 2456789999999999999999999632    111  11344443   222333 2222111   1247889


Q ss_pred             EEEEecCCCC
Q psy15979         73 ITWMVSSYTP   82 (152)
Q Consensus        73 L~W~~~~~~p   82 (152)
                      |.|.+.+..|
T Consensus       144 l~C~~~g~~p  153 (245)
T 4ei6_B          144 LVCLATGFYP  153 (245)
T ss_dssp             EEEEEEEEBS
T ss_pred             EEEEEeeEeC
Confidence            9999876433

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=97.97  E-value=5e-06  Score=59.98  Aligned_cols=42  Identities=29%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v~   51 (152)
                      +.++.+.    .+.|.|.+++.+|+|.|+|+|.|.+|...+. +.|.
T Consensus       155 ~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~  197 (212)
T 2yd1_A          155 NPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLY  197 (212)
T ss_dssp             STTEEEE----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCeEEcc----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEE
Confidence            4556553    2389999999999999999999999998753 3443

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=97.96  E-value=4.4e-05  Score=56.11  Aligned_cols=77  Identities=14%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCC-----CceE-----EEEEEecC-CCCceee-cCCC--CCCCC
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM-----GKHR-----AYLELSGK-PNPAIFR-SHPQ--GRLPN   69 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~-----G~~~-----~~~~v~~~-P~p~~~~-~~~~--~~~~~   69 (152)
                      .+|+.+..+  ....+|.|.+++.+|+|.|.|.+.|..     +...     ..+.|... +.+|.+. ..+.  .....
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~  144 (230)
T 3n9g_H           65 QGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGG  144 (230)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTC
T ss_pred             CCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCC
Confidence            368887643  356779999999999999999999864     2111     13445422 2333332 2221  12457


Q ss_pred             eEEEEEEecCCCC
Q psy15979         70 SYNITWMVSSYTP   82 (152)
Q Consensus        70 ~~~L~W~~~~~~p   82 (152)
                      .+.|.|.+.+..|
T Consensus       145 ~v~L~C~~~~~~P  157 (230)
T 3n9g_H          145 TAALGCLVKDYFP  157 (230)
T ss_dssp             EEEEEEEEEEEBS
T ss_pred             CEEEEEEEEeEEC
Confidence            8999999876433

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=97.96  E-value=6.8e-06  Score=53.96  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+...+...+|+|.+++.+|+|.|.|.+.|.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           61 PSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCcEEEeccCCEEEEEECCCChhhCEEEEEEEeeC
Confidence            46888876667789999999999999999999984

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=97.96  E-value=2.9e-05  Score=57.01  Aligned_cols=74  Identities=11%  Similarity=0.174  Sum_probs=46.0

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCc-----eEEEEEEec---CCCCceee-cCCCC---CCCCeEEE
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSG---KPNPAIFR-SHPQG---RLPNSYNI   73 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-----~~~~~~v~~---~P~p~~~~-~~~~~---~~~~~~~L   73 (152)
                      +|+.+.. .....+|.|.+++.+|+|.|.|.+.+..+.     ....+.|..   .+.+|.+. ..+..   .....+.|
T Consensus        63 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L  142 (240)
T 3q5y_A           63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATL  142 (240)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             CeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEE
Confidence            6887765 345778999999999999999999843111     112344443   22333332 22111   11478999


Q ss_pred             EEEecCC
Q psy15979         74 TWMVSSY   80 (152)
Q Consensus        74 ~W~~~~~   80 (152)
                      .|.+.+.
T Consensus       143 ~C~~~g~  149 (240)
T 3q5y_A          143 VCLARGF  149 (240)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeeE
Confidence            9998764

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}

Probab=97.95  E-value=5.9e-06  Score=61.77  Aligned_cols=68  Identities=13%  Similarity=0.070  Sum_probs=48.1

Q ss_pred             CCCCeEEEEEEecCC-CCcceEEEEEEECCCCC--CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         66 RLPNSYNITWMVSSY-TPLEEFKIKYRKIPGNE--PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~-~pi~~y~~~~r~~~~~~--~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      .+..++.|+|..+.. .-|..|++.+.......  ....+|.   |.+.|.|.|+|.|.|+.|.+.+.++..+.
T Consensus       162 VT~tSVtLsW~aP~~~~GI~gY~ly~~g~~v~~v~~~~tsyt~~gLk~~TeYsF~V~A~d~~G~~Ss~e~vtVr  235 (238)
T 2w1n_A          162 INKKNVTVTWTEPETTEGLEGYILYKDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLR  235 (238)
T ss_dssp             ECSSCEEEEEECCSCCTTEEEEEEEETTEEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCBCCCEEEEEE
T ss_pred             ccCCeEEEEecCCCCCCCceeEEEEeCCceeEEeeccceEEEecCCCCCCEEEEEEEEEeCCCCccccCcEEEE
Confidence            467999999998643 23889999774321111  1125665   44599999999999999999888555443

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=97.95  E-value=2.8e-05  Score=57.96  Aligned_cols=76  Identities=12%  Similarity=0.230  Sum_probs=48.1

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCC------CceEEEEEEec---CCCCceeecC-CCC---CCCCeE
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSG---KPNPAIFRSH-PQG---RLPNSY   71 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~------G~~~~~~~v~~---~P~p~~~~~~-~~~---~~~~~~   71 (152)
                      .+|+.+.. .....+|.|.+++.+|+|.|.|.+.|..      |.. ..+.|..   .+.||.+... +..   .....+
T Consensus        63 ~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~-~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~  141 (252)
T 1oga_E           63 AEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPG-TRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKA  141 (252)
T ss_dssp             CTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCC-EEEEEESCGGGCBCCEEEEECCCHHHHHHHSEE
T ss_pred             CCcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCC-EEEEEecccCCCCCCeEEEECCChhhhccCCce
Confidence            36787753 2346789999999999999999999962      222 2345543   2344444321 211   024678


Q ss_pred             EEEEEecCCCC
Q psy15979         72 NITWMVSSYTP   82 (152)
Q Consensus        72 ~L~W~~~~~~p   82 (152)
                      .|.|.+.+..|
T Consensus       142 ~L~C~~~g~~P  152 (252)
T 1oga_E          142 TLVCLATGFYP  152 (252)
T ss_dssp             EEEEEEEEEBS
T ss_pred             EEEEEEeeEcC
Confidence            99999876433

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=97.95  E-value=2.4e-05  Score=58.38  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=47.2

Q ss_pred             CCcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCC----Cce--EEEEEEe-cCCCCceee-cCCC--CCCCCeEEE
Q psy15979          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM----GKH--RAYLELS-GKPNPAIFR-SHPQ--GRLPNSYNI   73 (152)
Q Consensus         6 ~~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~----G~~--~~~~~v~-~~P~p~~~~-~~~~--~~~~~~~~L   73 (152)
                      .+|+.+..+  ....+|+|.+++.+|+|.|.|.+.|..    +..  ...+.|. ..+.+|.+. ..+.  ......+.|
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  144 (253)
T 3liz_H           65 KGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL  144 (253)
T ss_dssp             TTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEE
Confidence            367877642  356779999999999999999999862    211  1245554 333344333 2111  123678999


Q ss_pred             EEEecCC
Q psy15979         74 TWMVSSY   80 (152)
Q Consensus        74 ~W~~~~~   80 (152)
                      .|.+.+.
T Consensus       145 ~C~~~g~  151 (253)
T 3liz_H          145 GCLVKGY  151 (253)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeeE
Confidence            9998763

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=97.95  E-value=5.9e-05  Score=53.35  Aligned_cols=73  Identities=12%  Similarity=0.244  Sum_probs=47.6

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCC-----C-CcceE---EecCCCeEEEEEEEEcCCCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-----P-SPMSN---QLTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-----~-~~~~~---~L~~~~~Y~~rV~A~N~~G~  123 (152)
                      .|.||..... .....+++.|+|..+. .++..|.++|+......     . ....+   .|.+++.|.|+|.|.|..|.
T Consensus         6 ~p~~P~~l~~-~~~~~~sv~l~W~~p~-~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~~~   83 (186)
T 1qr4_A            6 DLDNPKDLEV-SDPTETTLSLRWRRPV-AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHK   83 (186)
T ss_dssp             --CCCEEEEE-ESCCSSEEEEEEECCS-SCCSEEEEEEECTTCCEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSCB
T ss_pred             CCcCCCceEE-EecCCCEEEEEEeCCC-CCccEEEEEEEeCCCCeeEEECCCCCCEEEECCCCCCCEEEEEEEEEcCCcc
Confidence            4555543311 1335689999999864 37889999998543211     1 11333   46669999999999998777


Q ss_pred             CCCC
Q psy15979        124 GNST  127 (152)
Q Consensus       124 g~~s  127 (152)
                      |.+.
T Consensus        84 s~~~   87 (186)
T 1qr4_A           84 SKPT   87 (186)
T ss_dssp             CCCE
T ss_pred             CCCE
Confidence            7653

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=97.94  E-value=5.1e-06  Score=56.02  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC-----CCceEEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP-----MGKHRAYLEL   50 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~-----~G~~~~~~~v   50 (152)
                      +|+.+.. ....+|.|.+++.+|+|.|.|.+.|.     +|.+...+.|
T Consensus        82 ~R~~~~~-~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L  129 (135)
T 1xt5_A           82 GRASVAN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL  129 (135)
T ss_dssp             TTEEESC-TTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEE
T ss_pred             CcEEEec-CCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEE
Confidence            6777643 23567999999999999999999995     4444455444

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.94  E-value=1e-05  Score=60.20  Aligned_cols=38  Identities=26%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      .+|+.+...+...+|+|.+++.+|+|.|.|.|.|..+.
T Consensus       195 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~  232 (253)
T 3uzq_A          195 PARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPW  232 (253)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred             CCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCc
Confidence            36787776677889999999999999999999996543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=97.94  E-value=2.8e-06  Score=56.10  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             eeCCCCCEEEEEEEEcCCCceEE
Q psy15979         24 KVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        24 ~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +++.+|+|.|+|.|+|.+|.+.+
T Consensus        78 ~v~~~D~G~Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           78 RKSRPDEGVYVCVARNYLGEAVS  100 (117)
T ss_dssp             TTBCSSCEEEEEEEEETTEEEEC
T ss_pred             CCCcCcCEEEEEEEEeCccceEe
Confidence            56899999999999999999876

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=97.93  E-value=6.2e-05  Score=62.33  Aligned_cols=112  Identities=7%  Similarity=0.087  Sum_probs=75.5

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEE-----EEEE---ecCC-CCceeecCC---CCCCCCeEEEEEEe----cCCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRA-----YLEL---SGKP-NPAIFRSHP---QGRLPNSYNITWMV----SSYT   81 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-----~~~v---~~~P-~p~~~~~~~---~~~~~~~~~L~W~~----~~~~   81 (152)
                      ..+.|.++.+.-.-.+..+|.|..|...-     .+.+   ...| .||..+...   ......++.|.|..    +...
T Consensus       259 ~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g  338 (589)
T 3l5h_A          259 SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANG  338 (589)
T ss_dssp             SEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSS
T ss_pred             eEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccC
Confidence            56788999888888899999999875321     1111   1334 344433211   13346899999985    2346


Q ss_pred             CcceEEEEEEECCCCCC-----CcceEEecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         82 PLEEFKIKYRKIPGNEP-----SPMSNQLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        82 pi~~y~~~~r~~~~~~~-----~~~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      +|..|.+.|+.......     ......|.+++.|.|+|.|.|..|.|.++..
T Consensus       339 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~~~V~A~n~~G~~~~s~~  391 (589)
T 3l5h_A          339 KILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVL  391 (589)
T ss_dssp             CCCEEEEEECCTTSCCCBCCCSSSCCEECCCSSCCCEEEEEEBTTBCCCCCCC
T ss_pred             ceeeEEEEEecCCCCceeeccCCceEEEEeCCCCEEEEEEEEeCCccCCCeEE
Confidence            88999999976543221     1111236779999999999999999988753

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=97.93  E-value=8.2e-06  Score=53.37  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+...+...+|+|.+++.+|+|.|.|.+.|.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           59 PSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCEEEEccCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence            46888876667788999999999999999999985

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=97.92  E-value=8.9e-06  Score=53.49  Aligned_cols=35  Identities=31%  Similarity=0.383  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+...+...+|+|.+++.+|+|.|.|.+.|.
T Consensus        63 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCcEEEEccCCEEEEEECCCCcccCEEEEEEEecC
Confidence            46888876667788999999999999999999985

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.92  E-value=1.3e-06  Score=74.16  Aligned_cols=53  Identities=23%  Similarity=0.371  Sum_probs=0.0

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCC
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP   56 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p   56 (152)
                      +|..+.++.+.  ...++|.|.+++.+|+|.|+|+|.|.+|.+++++.|.  ++|..
T Consensus       706 ~l~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          706 TLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK  760 (772)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ECcCCCCeEEc--CCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCc
Confidence            34455566554  2357899999999999999999999999999875555  55554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.92  E-value=8.1e-06  Score=57.32  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCCC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPN   55 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P~   55 (152)
                      ....|.|.+++.+|+|.|+|.|.|..|...+   .+.|.++|.
T Consensus       132 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          132 ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            3568999999999999999999997554333   355555554

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=97.92  E-value=9.2e-06  Score=54.51  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+...+...+|+|.+++.+|+|.|.|.+.|.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           61 SSRFSGSGSGRDYSFSISNLEPEDAATYYCLQYDN   95 (119)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred             CCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            46888876667789999999999999999999985

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=97.92  E-value=2.9e-05  Score=57.78  Aligned_cols=72  Identities=8%  Similarity=0.076  Sum_probs=44.7

Q ss_pred             cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCC---ceE-----EEEEEec---CCCCceeec-CCCC--C-CCCeEE
Q psy15979          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG---KHR-----AYLELSG---KPNPAIFRS-HPQG--R-LPNSYN   72 (152)
Q Consensus         8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G---~~~-----~~~~v~~---~P~p~~~~~-~~~~--~-~~~~~~   72 (152)
                      |+.+...+... |.|.+++.+|+|.|.|.+.|..|   ...     ..+.|..   .+.+|.+.. .+..  . ....+.
T Consensus        65 R~~~~~~~~~~-L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~  143 (253)
T 3to4_D           65 DYLATRVTDTE-LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  143 (253)
T ss_dssp             EEEEECCSSSC-CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEE
T ss_pred             cEEEEeCCCCe-EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceE
Confidence            77776554444 99999999999999999998754   111     1344443   223333322 1110  0 136889


Q ss_pred             EEEEecCC
Q psy15979         73 ITWMVSSY   80 (152)
Q Consensus        73 L~W~~~~~   80 (152)
                      |.|.+.+.
T Consensus       144 L~C~~~g~  151 (253)
T 3to4_D          144 LVCLATGF  151 (253)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEceE
Confidence            99998764

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=97.92  E-value=4.7e-05  Score=56.39  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=47.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCC----------------ceEEEEEEe-cCCCCceee-cCCC--
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG----------------KHRAYLELS-GKPNPAIFR-SHPQ--   64 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G----------------~~~~~~~v~-~~P~p~~~~-~~~~--   64 (152)
                      +|+.+..  .....+|.|.+++.+|+|.|.|.+.|..|                ... .+.|. ..+.+|.+. ..+.  
T Consensus        73 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t-~l~V~~~~~~~P~v~~~~~~~~  151 (239)
T 3tv3_H           73 SRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGT-LVTVSSASTKGPSVFPLAPSSK  151 (239)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCE-EEEECCCCCBCCEEEEECCCCC
T ss_pred             CCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCc-EEeeccCCCcCCEEEEECCChh
Confidence            6887764  24577899999999999999999998642                111 34444 233333333 2221  


Q ss_pred             CCCCCeEEEEEEecCCCC
Q psy15979         65 GRLPNSYNITWMVSSYTP   82 (152)
Q Consensus        65 ~~~~~~~~L~W~~~~~~p   82 (152)
                      ......+.|.|.+.+..|
T Consensus       152 ~~~g~~v~l~C~~~~~~p  169 (239)
T 3tv3_H          152 STSGGTAALGCLVKDYFP  169 (239)
T ss_dssp             C--TTEEEEEEEEEEEBS
T ss_pred             hccCCcEEEEEEEeeEeC
Confidence            123578999999876433

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.92  E-value=3.7e-05  Score=59.13  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=43.1

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCC-CCceeecCCC---CCCCCeEEEEEEecCCCC
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKP-NPAIFRSHPQ---GRLPNSYNITWMVSSYTP   82 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P-~p~~~~~~~~---~~~~~~~~L~W~~~~~~p   82 (152)
                      +.|.|.++..+|.|.|+|+|.|..|.....+.+.  ..+ .|..+...+.   ......+.|.|.+.+..|
T Consensus        72 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P  142 (323)
T 2wqr_A           72 SELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAP  142 (323)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECC
T ss_pred             EEEEEcHHHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCC
Confidence            4688888888899999999999998776655431  122 2333333221   123578999999876544

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.91  E-value=1.6e-05  Score=56.68  Aligned_cols=39  Identities=15%  Similarity=0.116  Sum_probs=33.4

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .+....|.|.+++.+|+|.|+|+|.|.+|.....+.|..
T Consensus       153 ~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v  191 (202)
T 3bp6_B          153 EGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP  191 (202)
T ss_dssp             TSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence            344567889999999999999999999999999877764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.91  E-value=6.7e-06  Score=66.79  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..|+.+..   .++|.|.+++.+|+|.|+|+|.|..|.++..+.|.
T Consensus       432 ~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~  474 (477)
T 2id5_A          432 NGRLTVFP---DGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH  474 (477)
T ss_dssp             ---CEECT---TSCEEESSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CceEEeCC---CCEEEEeeCChHHCEEEEEEEEeCCCcEEEEEEEE
Confidence            34555532   34699999999999999999999999998876654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.91  E-value=6.7e-06  Score=60.29  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=27.3

Q ss_pred             eEEEEceeCCCCCEEEEEEEEc---CCCceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATN---PMGKHRAYLEL   50 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N---~~G~~~~~~~v   50 (152)
                      ..|.|.+++.+|+|.|+|.|.|   .+|.+...+.|
T Consensus       213 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             TEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             cEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence            6899999999999999999999   45555555554

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=97.91  E-value=5e-05  Score=59.08  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=23.2

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      +++|.|.+++..|+|+|+|.|   .|.....
T Consensus        50 ~~~L~i~~~~~~d~G~YtC~~---~~~~~~~   77 (306)
T 3d85_D           50 GKTLTIQVKEFGDAGQYTCHK---GGEVLSH   77 (306)
T ss_dssp             SSEEEEEECSGGGCEEEEEEE---TTEEEEE
T ss_pred             CCEEEEEecCcCCCceEEEee---CCcccce
Confidence            468999999999999999999   3666543

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=97.90  E-value=9.7e-06  Score=54.42  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+.......+|+|.+++.+|+|.|.|.+.|.
T Consensus        59 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (120)
T 1mqk_L           59 PSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHYG   93 (120)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceEEEeccCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            47888876666788999999999999999999985

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=97.90  E-value=5.4e-05  Score=52.17  Aligned_cols=54  Identities=22%  Similarity=0.182  Sum_probs=36.8

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCce-E----EEEEEecCCCCcee
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-R----AYLELSGKPNPAIF   59 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~----~~~~v~~~P~p~~~   59 (152)
                      .+||.+...+...+|+|.+++.+|+|.|.|.+.|..+.. .    ..+.|.+.|.++.+
T Consensus        68 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~GT~L~V~~~p~~~~~  126 (134)
T 3kg5_A           68 KGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLAQL  126 (134)
T ss_dssp             TTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECTTTCCEEECCCEEEEEECC------
T ss_pred             CCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcCCCCceEECCCEEEEEecCCCHHHh
Confidence            578888766778899999999999999999999874311 1    13556666666543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=97.90  E-value=7.8e-06  Score=59.40  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=27.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCC-ceEE--EEEEecCCCCc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMG-KHRA--YLELSGKPNPA   57 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G-~~~~--~~~v~~~P~p~   57 (152)
                      ...|.|.+++.+|+|.|+|.|.|..| ..+.  .+.|.+.|.+|
T Consensus       136 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P  179 (204)
T 3sgj_C          136 NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVS  179 (204)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             CceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCC
Confidence            45799999999999999999999544 3332  35555555443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.90  E-value=1.5e-05  Score=58.40  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             CCcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         6 ~~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      ++|+.+.  ..+...+|.|.+++.+|+|.|+|.|.|..
T Consensus       185 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          185 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             ETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            4677775  34557899999999999999999999984

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=97.89  E-value=7.5e-06  Score=53.67  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+...+...+|+|.+++.+|+|.|.|.+.|.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           59 PDRFTGSGSATDFTLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             CTTEECCBCSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCEEEEEEEccC
Confidence            46787765556778999999999999999999985

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.89  E-value=9.6e-06  Score=57.84  Aligned_cols=32  Identities=13%  Similarity=0.063  Sum_probs=27.6

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~   49 (152)
                      +.|.|.++..+|+|.|+|+|+|..|.......
T Consensus       181 s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~  212 (225)
T 4fmk_A          181 SRYSLVPVGRADGVKVTCRVEHESFEEPILLP  212 (225)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTCSSCEEEE
T ss_pred             EEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEE
Confidence            47999999999999999999999987755433

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=97.89  E-value=5.2e-05  Score=55.16  Aligned_cols=36  Identities=28%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CCcEEEEEc---CCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          6 TERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         6 ~~r~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      ++|+.+..+   ....+|.|.+++.+|+|.|.|.+.|..
T Consensus        56 ~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   94 (207)
T 1ypz_E           56 NGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWH   94 (207)
T ss_dssp             ETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBC
T ss_pred             CCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            478888754   567789999999999999999999974

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=97.88  E-value=3.9e-05  Score=62.23  Aligned_cols=65  Identities=17%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCceeecC-CC---CCCCCeEEEEEEecCCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSH-PQ---GRLPNSYNITWMVSSYT   81 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~-~~---~~~~~~~~L~W~~~~~~   81 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|.......|.  ....||.+... +.   ......+.|.|.+.+..
T Consensus       308 ~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~  378 (475)
T 1iga_A          308 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFS  378 (475)
T ss_pred             EEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeE
Confidence            45799999999999999999999999865543442  23344433221 11   12356689999987653

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=97.88  E-value=4.2e-05  Score=51.14  Aligned_cols=61  Identities=11%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCC---------C-------CCcceEE---ecCCCeEEEEEEEEcCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGN---------E-------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~---------~-------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .+.+++.|.|..+. ..+..|.|+|......         .       ....++.   |.+++.|.|+|.|.+..|.|.+
T Consensus        20 ~T~~Si~LsW~~p~-g~v~~Y~i~y~~~~~~~~e~~~~~~~~~~~~v~~~~t~~~l~gL~PgT~Y~~~V~A~~~~~~s~p   98 (112)
T 2cui_A           20 VTTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS   98 (112)
T ss_dssp             CCSSCEEEECCCCT-TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECSSSEEEE
T ss_pred             ecCCeEEEEECCCC-CCccEEEEEEEeCCCCccccccccCcceEEEcCCCcCEEEeCCCCCCCEEEEEEEEEECCcccCC
Confidence            45789999999764 4688999999876432         1       1113444   5559999999999998887765


Q ss_pred             C
Q psy15979        127 T  127 (152)
Q Consensus       127 s  127 (152)
                      .
T Consensus        99 ~   99 (112)
T 2cui_A           99 I   99 (112)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.88  E-value=3.6e-06  Score=60.20  Aligned_cols=30  Identities=13%  Similarity=0.350  Sum_probs=27.4

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (152)
                      ...+.|.|.+++.+|+|.|+|+|.|.+|+.
T Consensus       150 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          150 ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            356789999999999999999999999987

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=97.88  E-value=1.1e-05  Score=58.93  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=42.7

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCce--EEEEEE-ecCCCCceeecCCC---CCCCCeEEEEEEecCC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLEL-SGKPNPAIFRSHPQ---GRLPNSYNITWMVSSY   80 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~~~v-~~~P~p~~~~~~~~---~~~~~~~~L~W~~~~~   80 (152)
                      .+.|.|.+++.+|+|.|+|.|.|..|..  +..+.+ .....||.+...+.   ......+.|.|.+.+.
T Consensus        75 ~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~  144 (218)
T 2rgs_A           75 VSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGF  144 (218)
T ss_dssp             EEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEE
T ss_pred             EEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEee
Confidence            3579999999999999999999998865  333322 12333444322111   1135789999999873

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.88  E-value=1e-05  Score=57.76  Aligned_cols=28  Identities=14%  Similarity=0.329  Sum_probs=25.3

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      ....|.|.+++.+|+|.|+|.|.|..+.
T Consensus       153 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  180 (196)
T 3p2t_A          153 HQAEFPMSPVTSVHGGTYRCFSSHGFSH  180 (196)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECGGGT
T ss_pred             cceEEEeCCCcccCCCeEEEEEEcCCCC
Confidence            4678999999999999999999998873

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=97.88  E-value=3.9e-05  Score=57.46  Aligned_cols=73  Identities=16%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             cEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCc------eEEEEEEec---CCCCce-eecCCCC---CCCCeEEE
Q psy15979          8 RRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGK------HRAYLELSG---KPNPAI-FRSHPQG---RLPNSYNI   73 (152)
Q Consensus         8 r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~------~~~~~~v~~---~P~p~~-~~~~~~~---~~~~~~~L   73 (152)
                      |+.+.. .....+|.|.+++.+|+|.|.|.+.|..+.      ....+.|..   .+.+|. ....+..   .....+.|
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L  169 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  169 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEE
Confidence            777753 345778999999999999999999974321      112344443   222333 2221111   12478999


Q ss_pred             EEEecCC
Q psy15979         74 TWMVSSY   80 (152)
Q Consensus        74 ~W~~~~~   80 (152)
                      .|.+.+.
T Consensus       170 ~C~~~g~  176 (270)
T 3qib_D          170 VCLATGF  176 (270)
T ss_dssp             EEEEEEE
T ss_pred             EEEecce
Confidence            9998763

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=97.88  E-value=1.5e-05  Score=53.57  Aligned_cols=46  Identities=26%  Similarity=0.452  Sum_probs=34.1

Q ss_pred             CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEc-CCCceEEEEEEec
Q psy15979          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG   52 (152)
Q Consensus         7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~~~v~~   52 (152)
                      +|+.+..   .....+|.|.|++.+|+|.|.|.+.+ ..|.....+.|++
T Consensus        66 ~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~V  115 (123)
T 4gjt_B           66 GRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRV  115 (123)
T ss_dssp             TTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEEC
T ss_pred             eEEEEecCCCcCCEEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEEE
Confidence            4555532   22356799999999999999998776 6888777766653

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.87  E-value=1.9e-05  Score=57.38  Aligned_cols=27  Identities=11%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      ...++|.|.+++.+|+|.|+|.|.|..
T Consensus        46 ~~~~~L~i~~v~~~DsG~Y~C~~~~~~   72 (204)
T 1sy6_A           46 EDKKKWNLGSNAKDPRGMYQCKGSQNK   72 (204)
T ss_dssp             SSCCCEEEEEGGGCCEEEEEEESSSSC
T ss_pred             CCCCeEEeCCCCcCCCEEEEEEecCCC
Confidence            345679999999999999999986643

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.86  E-value=9.2e-05  Score=55.09  Aligned_cols=67  Identities=12%  Similarity=0.243  Sum_probs=43.2

Q ss_pred             EEEEcee---CCCCCEE--EEEEEEcCCCceEEEEEEe--cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEE
Q psy15979         19 TLMIRKV---VASDFGN--YSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKI   88 (152)
Q Consensus        19 ~L~I~~v---~~~D~G~--YtC~A~N~~G~~~~~~~v~--~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~   88 (152)
                      .|.|..+   +.+|+|.  |+|.|.|..|..+..+.|.  ..|.|..............+.|.|.+.   |...+.|
T Consensus        57 ~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~---p~~~i~W  130 (265)
T 2oz4_A           57 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH---PRAKVTL  130 (265)
T ss_dssp             EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC---TTSEEEE
T ss_pred             eEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc---CCCEEEE
Confidence            5666655   7788885  9999999999987765554  445443322211112468899999987   3334454

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	5e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	6e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	8e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.001
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.001
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.002
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.003
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.004
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.004
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.004
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.004

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +  ET  R  +ET   R    +      D G Y+    NP+G+ +  L + 
Sbjct: 77  LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-07
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAI 58
           +++ +E   +E   +   L I        G Y+    N +G  +A + L+   KP+P  
Sbjct: 39 KQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP-- 96

Query: 59 FRSHPQG 65
              P G
Sbjct: 97 ----PAG 99

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (92), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
          + +    G+ + L I +V   D G Y+  A N  G      +L ++    P
Sbjct: 47 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-05
 Identities = 7/44 (15%), Positives = 13/44 (29%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
                ++     L I     +  G Y CE +       +   L+
Sbjct: 62  SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-05
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L+  E     +R     + I K   +  GNY CE T          +L 
Sbjct: 52  HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.2 bits (88), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L+I+ V   D G Y C ATN  G       + 
Sbjct: 54 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-05
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSG 52
             +  +     L ++ V  SD G Y C+  +          +L + G
Sbjct: 44 YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 5e-05
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
           TE         +  L I+ V  SD G Y+C   +   +  A +EL  + +P  + +  +
Sbjct: 69  TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPGR 126

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-05
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
              + R    +L++  VV SD GNY+C   N  G       L 
Sbjct: 52 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 11  METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
                    L + +    + GNY+  A NP G+  A +  +   NP  F  +P+
Sbjct: 56  ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP--FEFNPE 107

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 15/44 (34%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
                      L IR V  +D   Y C A N  G+  A + L 
Sbjct: 53 DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 16/34 (47%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           T  I  V ASD GNYS    N  GK  A   L+
Sbjct: 55 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 88

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.6 bits (81), Expect = 3e-04
 Identities = 12/42 (28%), Positives = 16/42 (38%)

Query: 10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            +   S   L I+ V   D G Y CEA N  G+      + 
Sbjct: 47 TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             +  T      L IR V   D G Y+C A N +G       L+
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 5e-04
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLELSGK 53
           +   +  R  + +   R  L I  +      G Y C  T+  G  +A + L  +
Sbjct: 48  LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 6e-04
 Identities = 7/42 (16%), Positives = 12/42 (28%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
                E ++  +R    +  +      D G Y C      G
Sbjct: 43 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 6e-04
 Identities = 10/50 (20%), Positives = 18/50 (36%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          +      R  +   G +H L+I     +D   YS   T      +  ++L
Sbjct: 40 IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.5 bits (78), Expect = 8e-04
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L   K+V  D G Y C A N  G   A  EL+
Sbjct: 53 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +L I +V   D   Y+C+A N +G+     EL 
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
                  +   L+IR V   D  +   +A N  G+    A+L +  K
Sbjct: 51 IYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          + L IR +  +D G Y CE          + ++
Sbjct: 56 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRA 46
            L+   V A D G Y C+A N  G    
Sbjct: 67 GDLIFDPVTAFDSGEYYCQAQNGYGTAMR 95

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK 43
           +L+  +  ASD G+Y C A  P G 
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGV 83

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.003
 Identities = 5/51 (9%), Positives = 12/51 (23%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             +  +R       +  T  +          +SC     +      L  +
Sbjct: 43 RGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN 93

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 11  METRGSRHTLMIRKVVAS-DFGNYSCEATNPMGKHRAYLELSGKPNP 56
               G   TL I  +V +     Y+C A N  G     + L  + + 
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 108

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
               S   +    V   D G Y+C  +   G++   + + 
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.004
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 11  METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP 56
            E   S   L+  K    + GNY+  A NP+G     +      +P P
Sbjct: 55  QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 102

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (73), Expect = 0.004
 Identities = 11/36 (30%), Positives = 13/36 (36%)

Query: 16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
              L IR V  SD G Y C  +N     +    L 
Sbjct: 52 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.25
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.2
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.19
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.14
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.13
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.12
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.12
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.1
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.1
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.06
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.06
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.04
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.03
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.02
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.01
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.01
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.01
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	98.99
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.97
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.97
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.96
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	98.95
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	98.95
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.92
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	98.91
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.9
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.89
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.85
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.85
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	98.85
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.85
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	98.84
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.83
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	98.82
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	98.81
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.8
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.79
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.79
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.79
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	98.78
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	98.77
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.76
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.76
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.76
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.76
d2avga1	110	Cardiac myosin binding protein C, different domain	98.75
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	98.75
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.75
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.74
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.74
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.73
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	98.73
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.72
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.72
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	98.71
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.71
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.71
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.69
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.68
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.68
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.68
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.68
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.65
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	98.63
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.62
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.61
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	98.6
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	98.6
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	98.59
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.59
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.58
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.57
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.57
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.56
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	98.55
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.55
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.53
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.53
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.51
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.51
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.5
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.5
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.5
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.49
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.49
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.47
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.47
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.47
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.47
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.46
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.43
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.43
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.43
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.42
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.42
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.41
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.39
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.39
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.36
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.36
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.35
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.34
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.34
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.34
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.33
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.32
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.32
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.31
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.31
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.3
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.3
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.29
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.29
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.25
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.24
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.22
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.22
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.22
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.17
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.16
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.11
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.11
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.08
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.06
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.05
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.03
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.98
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.97
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.96
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.85
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.68
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.49
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.44
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.26
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.2
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.08
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.03
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.01
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.95
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.91
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.82
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.81
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	96.69
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.68
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.66
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.64
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.62
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.62
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.62
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.58
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.57
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.55
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.55
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.54
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.53
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.53
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.51
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.5
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.48
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.48
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.46
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.46
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.44
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.41
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.4
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.4
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.38
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.36
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.34
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.27
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.25
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.17
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.15
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.13
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.12
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.09
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.09
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.09
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.09
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.09
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.02
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.0
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	95.91
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.91
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.9
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.88
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	95.84
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.83
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	95.81
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.78
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.76
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.75
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.73
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.72
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.7
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.63
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	95.56
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	95.56
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	95.53
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.52
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.5
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.5
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	95.18
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.14
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	95.12
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.11
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.02
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	94.97
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	94.95
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	94.93
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	94.93
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.71
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	94.66
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	94.56
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	94.4
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.32
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	94.3
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	93.9
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.77
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	93.76
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	93.49
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	93.4
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	93.39
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.36
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.32
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	93.31
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	92.82
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	92.63
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	92.61
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.47
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.41
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	92.41
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	92.35
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	92.3
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	92.28
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	92.2
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	92.15
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	92.07
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	92.01
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	91.93
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	91.79
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	91.7
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	91.64
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	91.62
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	91.57
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	91.54
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.51
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	91.5
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	91.49
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	91.49
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	91.48
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.45
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	91.42
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	91.38
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	91.13
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.1
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	90.99
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	90.98
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.96
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	90.91
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.87
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	90.84
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	90.84
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	90.83
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	90.75
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	90.73
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	90.61
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.6
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	90.54
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.5
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	90.43
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	90.42
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	90.31
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	90.23
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	90.21
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.13
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	90.03
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	89.97
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	89.9
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	89.82
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	89.8
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	89.77
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	89.72
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	89.68
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	89.66
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	89.33
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	89.22
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	89.14
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	88.96
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	88.94
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	88.94
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	88.88
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	88.85
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	88.79
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.62
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.58
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	88.51
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	88.33
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	88.19
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	87.92
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	87.86
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	87.57
d2hyma1	109	Interferon-alpha/beta receptor beta chain {Human (	87.52
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	87.37
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	87.24
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	87.16
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	87.15
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	87.14
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	87.04
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	86.51
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	86.47
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	86.16
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	86.09
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	86.07
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	85.66
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	85.64
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	85.31
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	85.2
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	85.17
d2avga1	110	Cardiac myosin binding protein C, different domain	84.04
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	82.82
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	82.67
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	82.48
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	82.34
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	81.67
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	81.26
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	80.71

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=84.24  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=50.4

Q ss_pred             CcccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE--EEEecCCCCce
Q psy15979          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAI   58 (152)
Q Consensus         1 ~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--~~v~~~P~p~~   58 (152)
                      ++|..++|+.+...++.++|.|.+++.+|+|.|+|.|.|.+|.++++  +.|.++|.||.
T Consensus        39 ~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~pP~   98 (101)
T d2cqva1          39 KQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA   98 (101)
T ss_dssp             SBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCC
T ss_pred             eeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCCCcC
Confidence            36778899999988888999999999999999999999999999885  45557888764

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.25  E-value=2e-11  Score=78.59  Aligned_cols=78  Identities=12%  Similarity=0.184  Sum_probs=57.9

Q ss_pred             EecCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC---------cc---eEEecCCCeEEEEE
Q psy15979         50 LSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS---------PM---SNQLTGTNQYQNRR  115 (152)
Q Consensus        50 v~~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~---------~~---~~~L~~~~~Y~~rV  115 (152)
                      |.++|.||.....  ....+++.|+|..+  ++.+|..|.++|+........         ..   ...|.+++.|.|||
T Consensus         2 V~dvP~~P~~~~v--~~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV   79 (100)
T d1cfba1           2 VQDVPNAPKLTGI--TCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRV   79 (100)
T ss_dssp             CCCCCCCCEEEEE--EECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEE
T ss_pred             cccCCCcCcCcEE--EEcCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEE
Confidence            4577888765532  23467899999974  346899999999976543311         11   23688899999999


Q ss_pred             EEEcCCCCCCCCCC
Q psy15979        116 LVRKRFDRGNSTNG  129 (152)
Q Consensus       116 ~A~N~~G~g~~s~~  129 (152)
                      .|.|.+|.|++|..
T Consensus        80 ~A~n~~G~g~~S~~   93 (100)
T d1cfba1          80 IAFNKIGASPPSAH   93 (100)
T ss_dssp             EEEETTEECCCCCC
T ss_pred             EEEeCCcCCCCcCC
Confidence            99999999999864

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.8e-11  Score=76.63  Aligned_cols=81  Identities=10%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEec---CCCCcceEEEEEEECCCCCCCc-----------ceEE---ecCCCeEEEEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSP-----------MSNQ---LTGTNQYQNRR  115 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~~~-----------~~~~---L~~~~~Y~~rV  115 (152)
                      .|.+|.....  ....+++.|.|..+   ++.+|..|.++|+......+..           ..+.   |.+++.|+|||
T Consensus         2 vP~~P~~~~~--~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   79 (101)
T d2haza1           2 TPSSPSIDQV--EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   79 (101)
T ss_dssp             CCCCCEEEEE--EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEE
T ss_pred             cCcCCccCEE--EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEE
Confidence            4665543321  23457899999974   3458999999999876654221           2344   56699999999


Q ss_pred             EEEcCCCCCCCCCCcccccc
Q psy15979        116 LVRKRFDRGNSTNGGLIVPK  135 (152)
Q Consensus       116 ~A~N~~G~g~~s~~~~~~~~  135 (152)
                      .|.|..|.|++|....+.++
T Consensus        80 ~A~N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          80 AALNGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             EEEETTEECCCCCCEEEECC
T ss_pred             EEEeCCcCcCCCCceeEEeC
Confidence            99999999999987766554

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3e-11  Score=77.85  Aligned_cols=68  Identities=15%  Similarity=0.248  Sum_probs=52.8

Q ss_pred             CCCeEEEEEEec---CCCCcceEEEEEEECCCCCCC------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPS------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|+|..+   ++.+|..|.|+|+......+.      ...+   .|.+++.|.|||+|.|..|.|++|+...+++
T Consensus        15 ~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~T   94 (97)
T d2crza1          15 KAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT   94 (97)
T ss_dssp             CSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECSSCBCCCCCCEEEEC
T ss_pred             eCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeecCCceEEEEcCCCCCEEEEEEEEEecCCeEcCCcCCCeEEe
Confidence            468999999964   345899999999987655422      1333   4666999999999999999999998766554

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.14  E-value=2.7e-11  Score=77.19  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=46.0

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.++.+...+..+.|.|.+++.+|+|.|+|+|+|.+|.+++.+.|.+
T Consensus        42 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          42 GAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             SCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            567788888888888999999999999999999999999999999887754

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5e-11  Score=79.24  Aligned_cols=49  Identities=27%  Similarity=0.399  Sum_probs=43.9

Q ss_pred             ccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         3 l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +..+.|+.+....+.+.|.|.++..+|+|.|+|+|+|.+|++++.+.|.
T Consensus        79 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  127 (130)
T d1gxea_          79 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK  127 (130)
T ss_dssp             CSCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEE
T ss_pred             eccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEE
Confidence            4456788888888899999999999999999999999999999987775

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.2e-10  Score=72.68  Aligned_cols=74  Identities=12%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCC-------CcceEE---ecCCCeEEEEEEEEcCC
Q psy15979         54 PNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP-------SPMSNQ---LTGTNQYQNRRLVRKRF  121 (152)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~-------~~~~~~---L~~~~~Y~~rV~A~N~~  121 (152)
                      |.||..... .....+++.|.|..+  ++.+|..|.|+|+.......       ....+.   |.+++.|+|||.|.|..
T Consensus         1 P~~P~~~~~-~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~   79 (93)
T d2vkwa2           1 PSAPKLEGQ-MGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ   79 (93)
T ss_dssp             CCCCEEEEE-ECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCccCEe-EEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCC
Confidence            455544321 234578999999985  45789999999998765431       113444   55599999999999999


Q ss_pred             CCCCCCC
Q psy15979        122 DRGNSTN  128 (152)
Q Consensus       122 G~g~~s~  128 (152)
                      |.|+|+.
T Consensus        80 G~s~ps~   86 (93)
T d2vkwa2          80 GKSKAAH   86 (93)
T ss_dssp             EECCCEE
T ss_pred             CCcCCEe
Confidence            9999974

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.8e-10  Score=73.15  Aligned_cols=63  Identities=10%  Similarity=0.067  Sum_probs=49.2

Q ss_pred             CCCCeEEEEEEec---CCCCcceEEEEEEECCCCCCC--------cceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPS--------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~~--------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|..+   ++.+|..|.|+|+..+...+.        ...+.   |.+++.|.|||.|.|..|.|+++.
T Consensus        13 ~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n~~G~s~~s~   89 (98)
T d1x5ya1          13 VTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPAT   89 (98)
T ss_dssp             ECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEETTEECCCCC
T ss_pred             ccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEECCCcCCCCcC
Confidence            3568999999974   346899999999987655421        13444   556999999999999999999875

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.10  E-value=5.4e-11  Score=75.48  Aligned_cols=52  Identities=37%  Similarity=0.388  Sum_probs=46.5

Q ss_pred             CcccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         1 ~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ++|.++.++.+...+..+.|.|.+++.+|+|.|+|+|+|.+|.+++.+.|.+
T Consensus        38 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   89 (91)
T d1tnna_          38 QVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI   89 (91)
T ss_dssp             STTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEEC
T ss_pred             cccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEE
Confidence            3677888999988888999999999999999999999999999988877754

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.10  E-value=9.3e-12  Score=80.00  Aligned_cols=51  Identities=24%  Similarity=0.358  Sum_probs=44.9

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..+.||.+...+....|.|.+++.+|+|.|+|+|.|.+|.++..+.|..
T Consensus        41 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   91 (97)
T d1koaa1          41 ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV   91 (97)
T ss_dssp             ECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEE
T ss_pred             ccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEE
Confidence            567788898888888889999999999999999999999999988766554

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.8e-10  Score=73.64  Aligned_cols=65  Identities=18%  Similarity=0.264  Sum_probs=50.2

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ...+++.|+|..+  ++.+|..|.|+|+..+...        .....+   .|.+++.|+|||.|.|..|.|++|...
T Consensus        24 ~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~~G~s~~S~~~  101 (108)
T d1wf5a1          24 VERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDT  101 (108)
T ss_dssp             SSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEEEEEEESSCEEEECCCC
T ss_pred             ccCCEEEEEEECCCCCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCEEEEEEEEEcCCcCCCCcCCc
Confidence            4568999999974  4568999999999865432        111334   466699999999999999999988765

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.4e-10  Score=74.13  Aligned_cols=68  Identities=12%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             CCCeEEEEEEec---CCCCcceEEEEEEECCCCCC-------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         67 LPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEP-------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        67 ~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~-------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      ..+++.|+|..+   ++.++..|.++++.......       ....+   .|.+++.|+|||.|.|..|.|++|+...+.
T Consensus        24 ~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~s~~S~~v~v~  103 (107)
T d2crma1          24 HSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ  103 (107)
T ss_dssp             ETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCC
T ss_pred             cCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCCEEEEEEEEECCCcCcCCCCcEEEE
Confidence            468999999964   34588999999987655431       12334   366699999999999999999999887664


Q ss_pred             c
Q psy15979        134 P  134 (152)
Q Consensus       134 ~  134 (152)
                      .
T Consensus       104 T  104 (107)
T d2crma1         104 T  104 (107)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.1e-10  Score=72.73  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             CCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         66 RLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        66 ~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      ...+++.|+|..+.  +.++..|.++|+......+.       ..++   .|.+++.|+|||.|.|..|.|+++.....+
T Consensus        11 ~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~T   90 (94)
T d2dn7a1          11 TAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT   90 (94)
T ss_dssp             CSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeCCEEEEEEeCCCCCCCceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcCCcCCCCccEEEee
Confidence            35689999999753  45899999999987655421       2334   466699999999999999999988755555


Q ss_pred             cc
Q psy15979        134 PK  135 (152)
Q Consensus       134 ~~  135 (152)
                      ++
T Consensus        91 ~e   92 (94)
T d2dn7a1          91 PE   92 (94)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.04  E-value=1.8e-10  Score=74.39  Aligned_cols=50  Identities=22%  Similarity=0.392  Sum_probs=43.5

Q ss_pred             cccCCCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          2 RLETTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         2 ~l~~~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..++++.+.. ....++|.|.+++.+|+|.|+|+|+|.+|.+++++.|.
T Consensus        48 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~   98 (102)
T d1fhga_          48 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL   98 (102)
T ss_dssp             ECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEE
Confidence            577888998865 44578899999999999999999999999999887765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.9e-10  Score=73.00  Aligned_cols=47  Identities=26%  Similarity=0.446  Sum_probs=41.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeC-CCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +.|+.+...+..+.|.|.++. .+|+|.|+|+|+|.+|.++..+.|.+
T Consensus        53 ~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          53 ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             GGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            467888888889999999998 57999999999999999999877754

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.3e-10  Score=74.35  Aligned_cols=56  Identities=25%  Similarity=0.326  Sum_probs=42.9

Q ss_pred             cccCCCcEEEE--E--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe--cCCCCc
Q psy15979          2 RLETTERRIME--T--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (152)
Q Consensus         2 ~l~~~~r~~i~--~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~--~~P~p~   57 (152)
                      +|..+.++.+.  .  ....+.|.|.+++.+|+|.|+|+|+|.+|++++++.|.  .+|.|.
T Consensus        42 ~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~P~  103 (105)
T d1wwca_          42 PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV  103 (105)
T ss_dssp             ECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCCCS
T ss_pred             ccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCCCCC
Confidence            46666665543  2  22356799999999999999999999999999987776  566663

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.1e-09  Score=71.44  Aligned_cols=63  Identities=19%  Similarity=0.297  Sum_probs=48.3

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCCC-C---------CcceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE-P---------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~-~---------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|.++  ++.+|..|.|+|+...... +         ....+   .|.+++.|+|||.|.|..|.|++|.
T Consensus        22 ~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~   99 (108)
T d1x4za1          22 ASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA   99 (108)
T ss_dssp             CCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEEEETTEECCCCC
T ss_pred             ccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEEEECCCcCCCCCC
Confidence            3568999999864  3568999999999865432 1         11233   4666999999999999999999875

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=4.8e-10  Score=72.87  Aligned_cols=63  Identities=22%  Similarity=0.364  Sum_probs=44.6

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCCCC--------------------CcceEE---ecCCCeEEEEEEEEcC
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP--------------------SPMSNQ---LTGTNQYQNRRLVRKR  120 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~--------------------~~~~~~---L~~~~~Y~~rV~A~N~  120 (152)
                      ...+++.|+|..+  ++.+|..|.|+|+.......                    ....+.   |.+++.|+|||.|.|.
T Consensus        11 ~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~   90 (107)
T d2ic2a1          11 LSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYS   90 (107)
T ss_dssp             CC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEEEEEEEEEET
T ss_pred             EECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcEEEEEEEEEcC
Confidence            3578999999974  45799999999987653210                    012333   6669999999999999


Q ss_pred             CCCCCCCC
Q psy15979        121 FDRGNSTN  128 (152)
Q Consensus       121 ~G~g~~s~  128 (152)
                      +|.|.+|+
T Consensus        91 ~G~s~~S~   98 (107)
T d2ic2a1          91 NNDNKESN   98 (107)
T ss_dssp             TSCEEECC
T ss_pred             CCCCCCCC
Confidence            99999775

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.01  E-value=2.6e-10  Score=73.13  Aligned_cols=52  Identities=21%  Similarity=0.209  Sum_probs=42.5

Q ss_pred             cccCCCcEEE-EEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          2 RLETTERRIM-ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         2 ~l~~~~r~~i-~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      +|..++++.+ ...++.+.|.|.+++.+|+|.|+|+|+|.+|.+++.+.|...
T Consensus        44 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          44 KIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             ECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEE
Confidence            5667777655 445667899999999999999999999999999887766543

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.8e-10  Score=71.09  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=58.5

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCC------CcceE---EecCCCeEEEEEEEEcCCC
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP------SPMSN---QLTGTNQYQNRRLVRKRFD  122 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~------~~~~~---~L~~~~~Y~~rV~A~N~~G  122 (152)
                      +.|.||..... .....+++.|+|..+...++..|.++|+.......      ...++   .|.+++.|.|||.|.|..|
T Consensus         9 ~vP~~P~~~~~-~~~~~~si~l~W~~p~~~~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   87 (102)
T d1x5za1           9 GVPGQPLNFKA-EPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQG   87 (102)
T ss_dssp             CCCCCCEEEEE-ECSSSSEEEEEEECCSCCCCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECSSC
T ss_pred             CCCcCCCCeEE-EEccCCEEEEEEECCCCCCccceEEEEEeCCCCceEEEEcCCcCEEEECCCCCCCEEEEEEEEEcCCC
Confidence            55665543221 12356899999998776789999999998765431      12344   4666999999999999999


Q ss_pred             CCCCCCCcccc
Q psy15979        123 RGNSTNGGLIV  133 (152)
Q Consensus       123 ~g~~s~~~~~~  133 (152)
                      .|.++....+.
T Consensus        88 ~g~~S~~v~~~   98 (102)
T d1x5za1          88 LGASTAEISAR   98 (102)
T ss_dssp             EEEECCCEEEE
T ss_pred             EeCCCCCEEEE
Confidence            99988766443

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1e-10  Score=77.47  Aligned_cols=82  Identities=13%  Similarity=0.087  Sum_probs=56.7

Q ss_pred             EEEEecCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEE
Q psy15979         47 YLELSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQN  113 (152)
Q Consensus        47 ~~~v~~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~  113 (152)
                      ...|...|.||..... .....+++.|+|..+  +..+|..|.++|+......        .....+.   |.+++.|.|
T Consensus         9 ~~~~~~~P~pP~~~~v-~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   87 (117)
T d1uema_           9 NYDLSDLPGPPSKPQV-TDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLF   87 (117)
T ss_dssp             CCCSCCSCBCCCCCEE-EEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEE
T ss_pred             cceeCccCcCCCCCEE-EEccCCEEEEEEECCCcCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEE
Confidence            3445567766542211 123568999999864  4568999999998765432        1113344   666999999


Q ss_pred             EEEEEcCCCCCCCCCC
Q psy15979        114 RRLVRKRFDRGNSTNG  129 (152)
Q Consensus       114 rV~A~N~~G~g~~s~~  129 (152)
                      ||.|.|..|.|+++..
T Consensus        88 rV~A~N~~G~s~~S~~  103 (117)
T d1uema_          88 MVRAINPQGLSDPSPM  103 (117)
T ss_dssp             EEEEEETTEEEEECCC
T ss_pred             EEEEEeCCcCCCCcCC
Confidence            9999999999998864

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.1e-10  Score=73.08  Aligned_cols=54  Identities=15%  Similarity=0.094  Sum_probs=41.9

Q ss_pred             cccCCCcEEEEE-----cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCC
Q psy15979          2 RLETTERRIMET-----RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN   55 (152)
Q Consensus         2 ~l~~~~r~~i~~-----~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~   55 (152)
                      +|.+++++.+..     ....+.|.|.+++.+|+|.|+|.|+|.+|++++++.|.....
T Consensus        41 ~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~   99 (103)
T d1wwbx_          41 ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW   99 (103)
T ss_dssp             EECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCC
T ss_pred             EeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeC
Confidence            466666665532     223467999999999999999999999999999888775433

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=5.9e-09  Score=65.94  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=47.6

Q ss_pred             CCCCeEEEEEEecC---CCCcceEEEEEEECCCCC-C--------CcceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNE-P--------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~-~--------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|..+.   ..+|..|.|.|+...... .        ....+   .|.+++.|+|||.|.|..|.|++|.
T Consensus        18 ~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~Ss   95 (95)
T d2ibga1          18 YSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSA   95 (95)
T ss_dssp             CSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCC
T ss_pred             eCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEEeCCccCCCCC
Confidence            34689999998642   346889999999875432 1        11334   3566999999999999999999874

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-09  Score=68.36  Aligned_cols=81  Identities=15%  Similarity=0.176  Sum_probs=57.1

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-------cceEE---ecCCCeEEEEEEEEcC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-------PMSNQ---LTGTNQYQNRRLVRKR  120 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-------~~~~~---L~~~~~Y~~rV~A~N~  120 (152)
                      .|.|+..... ...+.+++.|.|..+.  +.++..|.++|+..+.....       ...+.   |.+++.|+|+|.|.|.
T Consensus         3 ~P~~p~~~~~-~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~   81 (98)
T d1x5la1           3 APSQVVVIRQ-ERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTS   81 (98)
T ss_dssp             CCCCCCCEEC-SCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEET
T ss_pred             CCCCCCceEE-EeccCCEEEEEEECCCCCCCCEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEEcC
Confidence            4554433221 2345789999999643  35789999999987643311       13444   5559999999999999


Q ss_pred             CCCCCCCCCccccc
Q psy15979        121 FDRGNSTNGGLIVP  134 (152)
Q Consensus       121 ~G~g~~s~~~~~~~  134 (152)
                      .|.|.+|....+.+
T Consensus        82 ~G~g~~S~~v~~~T   95 (98)
T d1x5la1          82 AGCGRFSQAMEVET   95 (98)
T ss_dssp             TEECCCCCCEEEEC
T ss_pred             CCCcCCCCCEEEEc
Confidence            99999998776654

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.6e-09  Score=68.39  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=51.7

Q ss_pred             CCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC-----cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS-----PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~-----~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|+|..+  +..++..|.++|+........     ...+   .|.+++.|.|||.|.|..|.|.++....+..
T Consensus        13 s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~T   90 (93)
T d1x4xa1          13 SATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT   90 (93)
T ss_dssp             ETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCCEEEEESCSEEEEESCCSSCEEEEEEEEECSSCCCCBCCCEEEEC
T ss_pred             CCCeEEEEEEecccCCCeeEEEEEEEccCCCcceEeecCCccEEEEcccceeeEEEEEEEEEECCcCcCCCCcEEEEe
Confidence            468999999974  346889999999876544311     1334   3666999999999999999999997765543

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2e-09  Score=69.84  Aligned_cols=76  Identities=13%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCC-------------CcceE---EecCCCeEEEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP-------------SPMSN---QLTGTNQYQNR  114 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~-------------~~~~~---~L~~~~~Y~~r  114 (152)
                      .|.||..... .....+++.|+|..+  ++.++..|.++|+.......             ....+   .|.+++.|.||
T Consensus        10 ~P~~P~~~~~-~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr   88 (111)
T d1wisa1          10 LPGPPTNLGI-SNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFR   88 (111)
T ss_dssp             CCCCCEEEEE-ESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCC
T ss_pred             CCcCCCCCEE-EEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEEE
Confidence            4555543321 123578999999974  45789999999987654321             11234   36669999999


Q ss_pred             EEEEcCCCCCCCCCC
Q psy15979        115 RLVRKRFDRGNSTNG  129 (152)
Q Consensus       115 V~A~N~~G~g~~s~~  129 (152)
                      |.|.|.+|.|++|..
T Consensus        89 V~A~N~~G~s~~S~~  103 (111)
T d1wisa1          89 MRQVNIVGTSPPSQP  103 (111)
T ss_dssp             CEEECSSCBCCCCCC
T ss_pred             EEEEcCCcCCCCcCC
Confidence            999999999998864

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1e-09  Score=71.59  Aligned_cols=55  Identities=25%  Similarity=0.262  Sum_probs=41.7

Q ss_pred             cccCCCcEEEEE-------cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecCCCC
Q psy15979          2 RLETTERRIMET-------RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (152)
Q Consensus         2 ~l~~~~r~~i~~-------~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~P~p   56 (152)
                      +|..++++.+..       ....+.|.|.++..+|+|.|+|+|+|.+|.+++.+.|.....|
T Consensus        40 ~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          40 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             ECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCT
T ss_pred             EccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            455666554431       1124679999999999999999999999999999888754433

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.8e-09  Score=67.43  Aligned_cols=62  Identities=18%  Similarity=0.317  Sum_probs=49.1

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC-------C-CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-------P-SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-------~-~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ..+++.|+|..+...+|..|.++|+..+...       + ....+.   |.+++.|+|+|.|.|..|.|+++.
T Consensus        14 ~~~s~~vsW~~P~~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~~   86 (93)
T d1owwa_          14 QPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR   86 (93)
T ss_dssp             CTTCEEEEEECCSSSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEEE
T ss_pred             CCCEEEEEeecccccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeCCCccCcEE
Confidence            4589999999876678999999999875433       1 124455   555999999999999999998773

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.5e-09  Score=68.83  Aligned_cols=68  Identities=19%  Similarity=0.299  Sum_probs=52.4

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCCCCC-----cceEE---ecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPS-----PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~-----~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ..+++.|+|..+.  +.+|..|.++|+..+.....     ..++.   |.+++.|.|+|.|.|..|.|.+|....+.+
T Consensus        23 s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~v~T  100 (103)
T d1x5ga1          23 SPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT  100 (103)
T ss_dssp             ETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCCCEEECSSEEEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEEC
T ss_pred             cCCEEEEEEECCcCCCccEEEEEEEEEeCCCceeEEEeccccEEecCCCCCCCEEEEEEEEEcCCcCcCCCCCEEEEc
Confidence            4689999999743  45899999999987655422     23444   556999999999999999999987765543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.90  E-value=4.9e-10  Score=70.83  Aligned_cols=47  Identities=32%  Similarity=0.363  Sum_probs=40.2

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      +|..++|+.+.    .+.|.|.+++.+|+|.|+|+|+|.+|.+.+++.|.+
T Consensus        41 ~i~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4          41 PLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV   87 (89)
T ss_dssp             ECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccccceeeee----eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            56778888885    247999999999999999999999999988877654

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=1.2e-08  Score=65.29  Aligned_cols=81  Identities=10%  Similarity=0.090  Sum_probs=55.3

Q ss_pred             cCCCCceeec---CCCCCCCCeEEEEEEecCC------CCcceEEEEEEECCCCCCC------cceEE---ecCCCeEEE
Q psy15979         52 GKPNPAIFRS---HPQGRLPNSYNITWMVSSY------TPLEEFKIKYRKIPGNEPS------PMSNQ---LTGTNQYQN  113 (152)
Q Consensus        52 ~~P~p~~~~~---~~~~~~~~~~~L~W~~~~~------~pi~~y~~~~r~~~~~~~~------~~~~~---L~~~~~Y~~  113 (152)
                      ++|.||....   ........++.|+|..+..      ..+..|.++|+..+...+.      ...+.   |.+++.|.|
T Consensus         1 vkP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   80 (103)
T d1f6fb2           1 VEPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTGHQTQFKVFDLYPGQKYLV   80 (103)
T ss_dssp             BCCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEETCSEEEECCCCTTCEEEE
T ss_pred             CCCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecccceeEEEeCCCCcceEEEE
Confidence            3677775322   1123346789999997532      2567899999988765422      13343   556999999


Q ss_pred             EEEEEcCCC-CCCCCCCccc
Q psy15979        114 RRLVRKRFD-RGNSTNGGLI  132 (152)
Q Consensus       114 rV~A~N~~G-~g~~s~~~~~  132 (152)
                      ||+|+|..| ||+.|....+
T Consensus        81 rVra~~~~G~wS~wS~~~~~  100 (103)
T d1f6fb2          81 QTRCKPDHGYWSRWSQESSV  100 (103)
T ss_dssp             EEEEEESSSCCCCCCCCEEE
T ss_pred             EEEEEeCCCCCCCCcCceee
Confidence            999999999 6998887654

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.7e-09  Score=71.14  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=57.3

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCC---------CCcceE---EecCCCeEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE---------PSPMSN---QLTGTNQYQNRRLV  117 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~---------~~~~~~---~L~~~~~Y~~rV~A  117 (152)
                      +.|.||..... .....+++.|.|..+.  +.+|..|.|+|+......         .....+   .|.+++.|+|||.|
T Consensus        19 ~~P~~P~~~~~-~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   97 (117)
T d1wfoa1          19 DVPGPPMGILF-PEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITA   97 (117)
T ss_dssp             CCCCCCCCCEE-EEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEE
T ss_pred             CCCcCCCCcEE-EEecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEEE
Confidence            44655442211 1234689999998753  357999999998876543         111334   46669999999999


Q ss_pred             EcCCCCCCCCCCcccccc
Q psy15979        118 RKRFDRGNSTNGGLIVPK  135 (152)
Q Consensus       118 ~N~~G~g~~s~~~~~~~~  135 (152)
                      .|..|.|+++....++++
T Consensus        98 ~n~~G~g~~S~~~~~tT~  115 (117)
T d1wfoa1          98 QTRKGWGEAAEALVVTTE  115 (117)
T ss_dssp             ECSSCEEEEEEEEEECCS
T ss_pred             ECCCcCCCCcCCEEEECC
Confidence            999999999876655554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.85  E-value=5.3e-10  Score=70.71  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             CcccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus         1 ~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      ++|.+++||.+..++..+.|.|.+++.+|+|.|+|.|.|..+++...
T Consensus        39 ~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~sa~l~   85 (89)
T d1tiua_          39 QPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKSAANLK   85 (89)
T ss_dssp             CCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBCCEEEE
T ss_pred             eecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEEEEEEE
Confidence            46888999999999999999999999999999999999988776543

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.8e-09  Score=67.02  Aligned_cols=82  Identities=15%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEec---CCCCcceEEEEEEECCCCC--------CCcceE---EecCCCeEEEEEEEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNE--------PSPMSN---QLTGTNQYQNRRLVR  118 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~--------~~~~~~---~L~~~~~Y~~rV~A~  118 (152)
                      .|.+|..... .....+++.|+|..+   ...++..|.++|+......        .....+   .|.+++.|+|||.|.
T Consensus        10 ~P~~P~~l~~-~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A~   88 (107)
T d1x5fa1          10 LPSAPRDVVA-SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQ   88 (107)
T ss_dssp             CCCCCEEEEE-EEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCcCCCccEE-EEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEEE
Confidence            4565543221 123568999999864   3457889999999875543        112344   366699999999999


Q ss_pred             cCCCCCCCCCCcccccc
Q psy15979        119 KRFDRGNSTNGGLIVPK  135 (152)
Q Consensus       119 N~~G~g~~s~~~~~~~~  135 (152)
                      |..|.|++|....+.++
T Consensus        89 n~~G~g~~S~~i~v~T~  105 (107)
T d1x5fa1          89 NKHGSGESSAPLRVETQ  105 (107)
T ss_dssp             CSSCEEEECCCEEEECC
T ss_pred             eCCCCcCCCCCEEEECC
Confidence            99999999887766543

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=4.6e-09  Score=69.71  Aligned_cols=80  Identities=9%  Similarity=0.035  Sum_probs=55.9

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCCCc--------------------------ceEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSP--------------------------MSNQ  104 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~~--------------------------~~~~  104 (152)
                      .|.+|.....  ....+++.|+|..+  .+.+|..|.|+|+.........                          ....
T Consensus         7 ~P~aP~~v~v--~~~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   84 (123)
T d1wfta_           7 GPGAPSTVRI--SKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHID   84 (123)
T ss_dssp             CCCCCEEEEE--EECSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCB
T ss_pred             CCcCCcccEE--EeCCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcC
Confidence            4665544321  23468899999964  3458999999998865443100                          0114


Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      |.+++.|.|||+|.|..|.|.+|....+..
T Consensus        85 L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t  114 (123)
T d1wfta_          85 YTSRPAIVFRISAKNEKGYGPATQIRWLQG  114 (123)
T ss_dssp             CSSSCEEEEEEEEBSSSSBCCCEEEEEECC
T ss_pred             CCCCCEEEEEEEEecCCcCCCCCCcEEEEe
Confidence            777999999999999999999887655544

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.7e-08  Score=65.00  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=51.0

Q ss_pred             CCCCeEEEEEEecC--CCCcceEEEEEEECCCCCC----------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEP----------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~----------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ....++.|+|..+.  +.++..|.+.|+.......          ....+.   |.+++.|+|||.|.|..|.|.+|...
T Consensus        25 ~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v  104 (111)
T d1x5ka1          25 GKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV  104 (111)
T ss_dssp             SCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEEECSSCBCCCCCCE
T ss_pred             CCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEEEcCCCCcCCCCCE
Confidence            45689999999753  4588999999987654331          112344   55599999999999999999999876


Q ss_pred             ccc
Q psy15979        131 LIV  133 (152)
Q Consensus       131 ~~~  133 (152)
                      .+.
T Consensus       105 ~~~  107 (111)
T d1x5ka1         105 QFR  107 (111)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.5e-08  Score=65.08  Aligned_cols=76  Identities=16%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             CCCCceeec-CCCCCCCCeEEEEEEec----CCCCcceEEEEEEECCCCCCC-------cceEE---ecCCCeEEEEEEE
Q psy15979         53 KPNPAIFRS-HPQGRLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEPS-------PMSNQ---LTGTNQYQNRRLV  117 (152)
Q Consensus        53 ~P~p~~~~~-~~~~~~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~~-------~~~~~---L~~~~~Y~~rV~A  117 (152)
                      +|.||.... .......+.+.|+|..+    +...+..|.++|+......+.       ...+.   |.+++.|+|||+|
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra   80 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRA   80 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEE
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccceEEEEECCCCCCCEEEEEEEE
Confidence            477765432 12233467899999974    234678899999987655422       12343   5569999999999


Q ss_pred             EcCCCCCCCCC
Q psy15979        118 RKRFDRGNSTN  128 (152)
Q Consensus       118 ~N~~G~g~~s~  128 (152)
                      +|.+|.|.+|+
T Consensus        81 ~n~~g~g~wSe   91 (104)
T d1n26a3          81 QEEFGQGEWSE   91 (104)
T ss_dssp             EETTTBSCCCC
T ss_pred             EeCCCccCCcC
Confidence            99999988775

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.8e-10  Score=70.20  Aligned_cols=43  Identities=19%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             EEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE-EEEe
Q psy15979          9 RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS   51 (152)
Q Consensus         9 ~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-~~v~   51 (152)
                      ..+...+..++|.|.+++.+|+|.|+|+|.|..|.+.+. .+|.
T Consensus        51 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~   94 (96)
T d2c9aa1          51 KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV   94 (96)
T ss_dssp             EEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEE
Confidence            334444456789999999999999999999999987654 4554

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.1e-09  Score=67.02  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=52.3

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCcccc
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~  133 (152)
                      .+.+++.|.|..+  .+.++..|.++|+........       ...+   .|.+++.|+|||.|.|..|.|++|....+.
T Consensus        12 ~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~   91 (95)
T d2djsa1          12 ATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQ   91 (95)
T ss_dssp             ECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESSCEEEECCCEEEE
T ss_pred             ecCCEEEEEEEECCCCCcceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEcCCCCCCCCCCEEEE
Confidence            4578999999875  345899999999987654321       1223   467799999999999999999988776554

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.6e-09  Score=65.34  Aligned_cols=63  Identities=11%  Similarity=0.045  Sum_probs=49.5

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|..+...++..|.++|+......        ....++.   |.+++.|.|+|.|.|..|.|+|+.
T Consensus        17 ~t~~si~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~~   90 (95)
T d2fnba_          17 ITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT   90 (95)
T ss_dssp             CCSSCEEEECCCCCCSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETTEECCCCE
T ss_pred             EcCCEEEEEEEecCCceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCCcEeCCEE
Confidence            45789999999876678999999998875443        1123454   555999999999999999998873

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.5e-08  Score=64.49  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=55.4

Q ss_pred             CCCCeEEEEEEec----CCCCcceEEEEEEECCCCCC----------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEP----------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~----------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|...    ...++..|.+.|+.......          ...++.   |++++.|+|+|.|.|..|.|++|+
T Consensus        13 ~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~n~~G~s~~S~   92 (101)
T d1x4ya1          13 VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSN   92 (101)
T ss_dssp             SSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCCCCCC
T ss_pred             EcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEEEEcCCCCCCCCC
Confidence            3578999999853    23588999999998754331          113343   666999999999999999999999


Q ss_pred             Ccccccccc
Q psy15979        129 GGLIVPKAK  137 (152)
Q Consensus       129 ~~~~~~~~~  137 (152)
                      ...+.+++|
T Consensus        93 ~~~~~T~~~  101 (101)
T d1x4ya1          93 VMICETKAR  101 (101)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEEccCC
Confidence            888877764

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2e-09  Score=69.48  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=50.7

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ...+++.|+|..+  ++.+|..|.++++........       ...+   .|.+++.|+|||.|.|.+|.|++|+...+
T Consensus        22 ~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~N~~G~s~~S~~~~~  100 (105)
T d1x3da1          22 RTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLY  100 (105)
T ss_dssp             EETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEE
T ss_pred             ccCCEEEEEEECCCCCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEEEEEECCCeEcCCCCcEEE
Confidence            3568999999975  356899999998865443311       1233   46669999999999999999999876644

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.5e-09  Score=67.84  Aligned_cols=80  Identities=13%  Similarity=0.054  Sum_probs=56.6

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCC-------C-CcceE---EecCCCeEEEEEEEEcC
Q psy15979         54 PNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE-------P-SPMSN---QLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~-------~-~~~~~---~L~~~~~Y~~rV~A~N~  120 (152)
                      |.||.....  ....+++.|+|..+  ...+|..|.++|+......       . ....+   .|.+++.|+|||.|.|.
T Consensus         8 ~sPP~~~~~--~~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~   85 (108)
T d1v5ja_           8 LSPPRGLVA--VRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAG   85 (108)
T ss_dssp             CCCCEEEEE--EECSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEET
T ss_pred             CCcCCCeEE--EEcCCEEEEEEEecccCCCceeEEEEEeeeeeeeeeeccccccceeeeEEEEeccCCcEEEEEEEEEeC
Confidence            445544432  23467899999974  3457899999999865432       1 11334   35669999999999999


Q ss_pred             CCCCCCCCCcccccc
Q psy15979        121 FDRGNSTNGGLIVPK  135 (152)
Q Consensus       121 ~G~g~~s~~~~~~~~  135 (152)
                      .|.|++++...+.+.
T Consensus        86 ~g~s~~S~~~~~~T~  100 (108)
T d1v5ja_          86 SFVSDPSNTANVSTS  100 (108)
T ss_dssp             TEEEEECSCCCCCCS
T ss_pred             CCEeCCcCceEEECC
Confidence            999999987766543

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.2e-08  Score=65.15  Aligned_cols=77  Identities=22%  Similarity=0.234  Sum_probs=53.3

Q ss_pred             cCCCCceee-cCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC----------cceEE---ecCCCeEEEEE
Q psy15979         52 GKPNPAIFR-SHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS----------PMSNQ---LTGTNQYQNRR  115 (152)
Q Consensus        52 ~~P~p~~~~-~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~----------~~~~~---L~~~~~Y~~rV  115 (152)
                      .+|.||... .........++.|+|..+  .+.++..|.++|+........          ...+.   |.+++.|+|||
T Consensus         3 vkP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V   82 (115)
T d1bqua2           3 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI   82 (115)
T ss_dssp             EECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEE
T ss_pred             eECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEE
Confidence            356666543 222334568899999974  346788999999987654411          13444   55599999999


Q ss_pred             EEEcCCCCCCCCC
Q psy15979        116 LVRKRFDRGNSTN  128 (152)
Q Consensus       116 ~A~N~~G~g~~s~  128 (152)
                      .|+|..|.|.+++
T Consensus        83 ~a~~~~G~g~~S~   95 (115)
T d1bqua2          83 RCMKEDGKGYWSD   95 (115)
T ss_dssp             EEEETTSCSCCCC
T ss_pred             EEEeCCCccCCcC
Confidence            9999999987664

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2e-08  Score=62.85  Aligned_cols=68  Identities=13%  Similarity=0.087  Sum_probs=52.3

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      ...+++.|+|..+. ..+..|.++|+........       ...+   .|.+++.|.|||.|.|..|.|.+|....+.+
T Consensus        13 ~s~~si~l~W~~p~-~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T   90 (92)
T d1qg3a1          13 AGSRKIHFNWLPPS-GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRT   90 (92)
T ss_dssp             CSTTCEEEEEECCS-SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEEC
T ss_pred             ccCCEEEEEEEecC-CCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCCcCcCCCCCEEEEc
Confidence            35789999999864 4678999999987654311       1234   4666999999999999999999998776544

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.9e-09  Score=66.84  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ....+.|.|.+++.+|+|.|+|+|.|..|+.+.++.|.
T Consensus        51 ~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~   88 (90)
T d1gsma1          51 DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL   88 (90)
T ss_dssp             ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEE
Confidence            45678999999999999999999999999999887764

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.79  E-value=7.1e-10  Score=70.98  Aligned_cols=37  Identities=32%  Similarity=0.555  Sum_probs=33.3

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...++|.|.+++.+|+|.|+|+|+|.+|.++.++.|.
T Consensus        59 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   95 (97)
T d3dara1          59 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   95 (97)
T ss_dssp             GGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            3457899999999999999999999999999887775

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=4.6e-08  Score=63.12  Aligned_cols=63  Identities=13%  Similarity=0.066  Sum_probs=46.2

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCC-CCC--------cceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGN-EPS--------PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~-~~~--------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ....++.|+|..+  ....+..|.++|+..... .+.        ...+.   |.+++.|+|||+|.|..|.|..|+
T Consensus        19 ~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~g~g~wS~   95 (106)
T d1cd9b2          19 HQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP   95 (106)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCC
T ss_pred             CCCCEEEEEEcCcccCCccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeCCCCCCCcC
Confidence            3578999999974  345688999999976433 211        13343   555999999999999999987665

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5e-08  Score=62.65  Aligned_cols=63  Identities=10%  Similarity=0.157  Sum_probs=46.3

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCCC--------CC-cceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE--------PS-PMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~--------~~-~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|..+  ....+..|.++|+......        .. ...+.   |.+++.|+|||+|.|..|.|.+|+
T Consensus        18 ~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~~g~G~~S~   94 (105)
T d2d9qb2          18 PQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSD   94 (105)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCC
T ss_pred             CCCCeEEEEEcCCCCCCceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeCCCCCCCcC
Confidence            3578999999974  3346788999999865432        11 12344   556999999999999999976554

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.3e-08  Score=65.50  Aligned_cols=69  Identities=17%  Similarity=0.298  Sum_probs=52.3

Q ss_pred             CCCCeEEEEEEecC-CCCcceEEEEEEECCCCC------------CCcceE---EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSS-YTPLEEFKIKYRKIPGNE------------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~~-~~pi~~y~~~~r~~~~~~------------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ..++++.|+|..+. ..+|..|+++|+......            ....++   .|.+++.|+|||.|.|..|.|.+|+.
T Consensus        27 ~s~tsi~v~W~~p~~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S~~  106 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSES  106 (120)
T ss_dssp             CBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCCCC
T ss_pred             eCCCeEEEEecCCCCCCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCCCCC
Confidence            35789999999863 357889999999875432            111334   36669999999999999999999987


Q ss_pred             ccccc
Q psy15979        130 GLIVP  134 (152)
Q Consensus       130 ~~~~~  134 (152)
                      ..+.+
T Consensus       107 ~~~~T  111 (120)
T d1ujta_         107 KTVRT  111 (120)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            75533

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.76  E-value=7.4e-09  Score=65.12  Aligned_cols=42  Identities=29%  Similarity=0.376  Sum_probs=35.4

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.|+.+..    ..|.|.+++.+|+|.|+|+|+|.+|.+...+.|.
T Consensus        46 ~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~   87 (89)
T d1biha4          46 GGRATVTD----SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ   87 (89)
T ss_dssp             SSSEEEET----TEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cccEEEee----eeEEECCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            45777752    2599999999999999999999999998877664

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=4.4e-09  Score=66.87  Aligned_cols=49  Identities=31%  Similarity=0.520  Sum_probs=39.1

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEec
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSG   52 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~~   52 (152)
                      +|..+.++++..  ..++|.|.+++.+|+|.|+|.|.|.+|...+ .+.|..
T Consensus        42 ~l~~~~~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V   91 (96)
T d1l6za2          42 SLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI   91 (96)
T ss_dssp             ECCCCTTEEEET--TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEE
T ss_pred             ecccccceeccC--CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEE
Confidence            466778888764  3468999999999999999999999998865 344443

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.1e-09  Score=71.66  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .+.|.|.+++.+|+|.|+|+|+|..|.+++.+.|.+
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  102 (113)
T d2dava1          67 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV  102 (113)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEE
T ss_pred             EEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEE
Confidence            457999999999999999999999999988655553

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.6e-09  Score=70.62  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=33.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ..+.|.|.+++.+|+|.|+|+|+|..|.+++.+.|.+
T Consensus        70 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  106 (110)
T d2avga1          70 YLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV  106 (110)
T ss_dssp             EEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEE
Confidence            3467999999999999999999999999999887764

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-08  Score=64.29  Aligned_cols=68  Identities=7%  Similarity=0.062  Sum_probs=49.9

Q ss_pred             CCCCeEEEEEEecC---CCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         66 RLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        66 ~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      .+.+++.|+|..+.   ..++..|.++++........       ..++   .|.+++.|.|||.|.|..|.|++|....+
T Consensus        12 ~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~G~s~~S~~~~~   91 (96)
T d1x5xa1          12 AGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEF   91 (96)
T ss_dssp             ECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEE
T ss_pred             ecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcCCcEeCCCCCEEE
Confidence            35689999999742   35788888888766544311       1334   46669999999999999999999876654


Q ss_pred             c
Q psy15979        133 V  133 (152)
Q Consensus       133 ~  133 (152)
                      +
T Consensus        92 ~   92 (96)
T d1x5xa1          92 T   92 (96)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.75  E-value=2.9e-09  Score=67.26  Aligned_cols=36  Identities=33%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ..++|.|.+++.+|+|.|+|+|+|.+|.++..+.|.
T Consensus        53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   88 (91)
T d1cs6a3          53 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII   88 (91)
T ss_dssp             SSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEE
Confidence            356899999999999999999999999998877664

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.2e-09  Score=65.47  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ....+.|.|.+++.+|+|.|+|+|.|..|.++.++.|.
T Consensus        50 ~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~   87 (90)
T d1vcaa2          50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE   87 (90)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEE
T ss_pred             ecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEE
Confidence            35678999999999999999999999999999987765

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.6e-08  Score=60.61  Aligned_cols=62  Identities=16%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------CcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------SPMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+.+++.|+|..+...++..|.++|+.......        ....+   .|.+++.|+|+|.|.|..|.|+|.
T Consensus        12 ~~~~sv~l~W~~p~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~S~p~   84 (91)
T d1fnfa2          12 IGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL   84 (91)
T ss_dssp             CCSSCEEEEEECCTTCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             eCCCEEEEEEEecCCCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCCCCCCE
Confidence            457899999998766788999999998765431        12334   366699999999999999998765

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.7e-09  Score=66.16  Aligned_cols=40  Identities=23%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      .++.+..++..+.|.|.+++.+|+|.|+|+|.|..+++..
T Consensus        46 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~a~l   85 (90)
T d1x44a1          46 SRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKL   85 (90)
T ss_dssp             CSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEEEEEEE
T ss_pred             ccEEEEEeCCccEEEECccccccCEEEEEEEecceEEEEE
Confidence            4578888888999999999999999999999996554443

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.73  E-value=2.4e-08  Score=64.28  Aligned_cols=65  Identities=11%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             CCCCeEEEEEEec----CCCCcceEEEEEEECCCCCC---------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEP---------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~---------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ...+++.|+|...    .+.++..|.|.|+.......         ...++.   |.+++.|+|+|.|.|..|.|.++..
T Consensus        16 ~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G~gp~S~~   95 (105)
T d1cfba2          16 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAE   95 (105)
T ss_dssp             SSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCC
T ss_pred             ccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcCCCCCCC
Confidence            3568999999852    34589999999998764431         123444   5559999999999999999998865


Q ss_pred             c
Q psy15979        130 G  130 (152)
Q Consensus       130 ~  130 (152)
                      .
T Consensus        96 ~   96 (105)
T d1cfba2          96 E   96 (105)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.72  E-value=6.6e-09  Score=67.04  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=33.3

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...+.|.|.+++.+|+|.|+|+|+|.+|.+.+++.|.
T Consensus        71 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~  107 (109)
T d2fdbp2          71 KEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT  107 (109)
T ss_dssp             EEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEE
Confidence            3457899999999999999999999999999887775

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.2e-08  Score=61.56  Aligned_cols=81  Identities=11%  Similarity=0.077  Sum_probs=51.6

Q ss_pred             cCCCCceeecCC---CCCCCCeEEEEEEecCC------CCcceEEEEEEECCCCCCC------cceE---EecCCCeEEE
Q psy15979         52 GKPNPAIFRSHP---QGRLPNSYNITWMVSSY------TPLEEFKIKYRKIPGNEPS------PMSN---QLTGTNQYQN  113 (152)
Q Consensus        52 ~~P~p~~~~~~~---~~~~~~~~~L~W~~~~~------~pi~~y~~~~r~~~~~~~~------~~~~---~L~~~~~Y~~  113 (152)
                      ++|.||......   ......++.|+|..+..      ..+..|.++|+........      ...+   .|.+++.|.|
T Consensus         1 vkP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   80 (104)
T d3d48r2           1 VQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLV   80 (104)
T ss_dssp             BCCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEETCSEEEECC--CCCEEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccccccEEEECCCCCCCEEEE
Confidence            367777543211   12346789999997531      2456788888887654321      1233   4666999999


Q ss_pred             EEEEEcCCCC-CCCCCCccc
Q psy15979        114 RRLVRKRFDR-GNSTNGGLI  132 (152)
Q Consensus       114 rV~A~N~~G~-g~~s~~~~~  132 (152)
                      ||+|+|..|. |+.|....+
T Consensus        81 rVrA~n~~G~ws~wS~~~~v  100 (104)
T d3d48r2          81 QVRCKPDHGYWSAWSPATFI  100 (104)
T ss_dssp             EEEEEESSSCCCCCCCCEEE
T ss_pred             EEEEEeCCCCCCCCcCCEEE
Confidence            9999999995 999987754

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.5e-08  Score=64.89  Aligned_cols=63  Identities=11%  Similarity=0.198  Sum_probs=47.0

Q ss_pred             CCCCeEEEEEEec---CCCCcceEEEEEEECCCCCC--------CcceE---EecCCCeEEEEEEEEcCCCC-CCCCC
Q psy15979         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEP--------SPMSN---QLTGTNQYQNRRLVRKRFDR-GNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~~~~--------~~~~~---~L~~~~~Y~~rV~A~N~~G~-g~~s~  128 (152)
                      .+.+++.|+|..+   ++.++..|.++++.......        ....+   .|.+++.|+|||.|.|.+|. |+++.
T Consensus        14 ~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n~~G~~s~~S~   91 (104)
T d1bpva_          14 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSE   91 (104)
T ss_dssp             EETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEECTTSCEEEEEE
T ss_pred             ecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEECCCCCCCCcC
Confidence            3568999999864   34689999999988765431        11334   46669999999999999997 66654

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=1.8e-08  Score=64.04  Aligned_cols=47  Identities=23%  Similarity=0.318  Sum_probs=37.2

Q ss_pred             CCCcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE-EEEEEe
Q psy15979          5 TTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELS   51 (152)
Q Consensus         5 ~~~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~~~v~   51 (152)
                      .++|+.+. .....++|.|.+++.+|+|.|+|+|+|..|... +++.|.
T Consensus        46 ~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~   94 (97)
T d1epfa1          46 NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK   94 (97)
T ss_dssp             BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEE
T ss_pred             ccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEE
Confidence            45677765 355678999999999999999999999999754 455543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=5.7e-09  Score=65.25  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ++|.|.+++.+|+|.|+|.|+|..|.++.++.|.+
T Consensus        54 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          54 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            47999999999999999999999999998877753

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.8e-08  Score=65.75  Aligned_cols=63  Identities=13%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             CCCeEEEEEEecC--CCCcceEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        67 ~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ..+++.|.|..+.  +.++..|.|+|+......      .....+.   |.+++.|.|+|.|.|..|.|+++..
T Consensus        32 ~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~~~~  105 (113)
T d1x5ia1          32 LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE  105 (113)
T ss_dssp             ETTEEEEEEECCSCTTBCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCC
T ss_pred             CCCEEEEEEEccccCCccEEEEEEEeeeccccceeeeeeCCccEEEEeccccCcEEEEEEEEECCCcCCCCeee
Confidence            3578999999753  358999999998654332      1123444   5559999999999999999997643

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=6e-09  Score=66.67  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=33.3

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ...+.|.|.+++.+|+|.|+|+|+|.+|.++..+.|.
T Consensus        60 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   96 (100)
T d1qz1a3          60 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK   96 (100)
T ss_dssp             TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            4567899999999999999999999999999877765

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.1e-08  Score=63.99  Aligned_cols=63  Identities=10%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             CCCeEEEEEEec--CCCCcceEEEEEEECCCCCC-------------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP-------------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        67 ~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~-------------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ..+++.|+|..+  .+.++..|.+.|+.......             ....+.   |++++.|+|||.|.|..|.|.++.
T Consensus        15 ~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~   94 (103)
T d1qg3a2          15 SSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPERE   94 (103)
T ss_dssp             ETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEEEEEEETTEECCCEE
T ss_pred             cCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEEEEEEcCCccCCCcc
Confidence            468999999975  34689999999987754321             113344   666999999999999999998775


Q ss_pred             C
Q psy15979        129 G  129 (152)
Q Consensus       129 ~  129 (152)
                      .
T Consensus        95 ~   95 (103)
T d1qg3a2          95 A   95 (103)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.6e-08  Score=65.13  Aligned_cols=64  Identities=14%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             CCCCeEEEEEEecC--CCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ...+++.|+|..+.  +.+|..|.++|+......        ....++.   |.+++.|.|+|.|.|..|.|+++..
T Consensus        22 ~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~   98 (106)
T d1wfna1          22 ILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS   98 (106)
T ss_dssp             CCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSSCEEEEEEE
T ss_pred             ecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEEECCCCCcCCcCC
Confidence            35689999998753  347899999998875432        1123444   6669999999999999999988754

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1e-08  Score=64.41  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=34.4

Q ss_pred             cccCCCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979          2 RLETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus         2 ~l~~~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +|..++++.+..  ....+.|.|.+++.+|+|.|+|+|+|..|...+
T Consensus        36 ~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1          36 VVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             ECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             ccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            355555555543  334568999999999999999999999998643

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.68  E-value=5.9e-09  Score=66.54  Aligned_cols=45  Identities=31%  Similarity=0.547  Sum_probs=35.4

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEe
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~   51 (152)
                      .++........++|.|.+++.+|+|.|+|+|.|.+|.+.+ ++.|.
T Consensus        50 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~   95 (97)
T d1biha3          50 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT   95 (97)
T ss_dssp             SSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEE
T ss_pred             eeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEE
Confidence            3444444455678999999999999999999999998765 56654

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.9e-08  Score=61.94  Aligned_cols=76  Identities=11%  Similarity=0.087  Sum_probs=48.9

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCC------CcceEEEEEEECCCCCCC------cceEEecCCCeEEEEEEEEcC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYT------PLEEFKIKYRKIPGNEPS------PMSNQLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~------pi~~y~~~~r~~~~~~~~------~~~~~L~~~~~Y~~rV~A~N~  120 (152)
                      +|.||..........+..+.|+|..+...      -.+.|.++|+..+.....      .....|.+++.|.|||+|++.
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~~~t~~~L~p~~~Y~v~VRa~~~   80 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDR   80 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESSSEEEECCCSSCEEEEEEEES
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccccceEEEecCCCCEEEEEEEecC
Confidence            57777644321112246699999986421      156899999876654422      145678899999999999999


Q ss_pred             CCCCCCCC
Q psy15979        121 FDRGNSTN  128 (152)
Q Consensus       121 ~G~g~~s~  128 (152)
                      +|.|..|+
T Consensus        81 ~~~g~WSe   88 (94)
T d3d85d3          81 YYSSSWSE   88 (94)
T ss_dssp             SSCCCCCC
T ss_pred             CCCCCCcc
Confidence            99887765

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=8.4e-09  Score=64.18  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      ...|.|.+++.+|+|.|+|+|.|..|..+..+.|.+.
T Consensus        44 ~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~   80 (84)
T d2nxyb2          44 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL   80 (84)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEE
T ss_pred             eeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEE
Confidence            3579999999999999999999999999998777643

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.3e-08  Score=63.10  Aligned_cols=65  Identities=14%  Similarity=0.131  Sum_probs=50.3

Q ss_pred             CCCCeEEEEEEec----CCCCcceEEEEEEECCCCCCC-------cceEEecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEPS-------PMSNQLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~----~~~pi~~y~~~~r~~~~~~~~-------~~~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ...+++.|.|...    .+.+|..|.++|+........       .....|.+++.|.|||.|.|..|.|.++...
T Consensus        29 ~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v  104 (117)
T d1wj3a_          29 ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQI  104 (117)
T ss_dssp             EETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEESSSEEEEECCCSSCEEEEEEEEESSCCCCBCCCE
T ss_pred             ecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeeceeeEEEeeccCCcEEEEEEEEEcCCccCCCCCCE
Confidence            3568999999852    235889999999987654421       1234688899999999999999999988654

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.9e-08  Score=63.28  Aligned_cols=80  Identities=16%  Similarity=0.309  Sum_probs=55.9

Q ss_pred             EecCCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCCCC---------cceE---EecCCCeEEEEE
Q psy15979         50 LSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPS---------PMSN---QLTGTNQYQNRR  115 (152)
Q Consensus        50 v~~~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~~---------~~~~---~L~~~~~Y~~rV  115 (152)
                      +...|.||..... .....+++.|+|..+  ...++..|.++|+........         ...+   .|.+++.|+|||
T Consensus        13 v~d~P~~P~~~~v-~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   91 (127)
T d1ueya_          13 VYDVPNPPFDLEL-TDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRV   91 (127)
T ss_dssp             CCCSCCCCEEEEE-ECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEE
T ss_pred             ccccCcCCCCcEE-EEecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEEEEE
Confidence            3456776643311 134568999999975  345788999999876544311         1223   477799999999


Q ss_pred             EEEcCCCCCCCCCCc
Q psy15979        116 LVRKRFDRGNSTNGG  130 (152)
Q Consensus       116 ~A~N~~G~g~~s~~~  130 (152)
                      .|.|..|.|+++...
T Consensus        92 ~A~n~~G~s~~S~~s  106 (127)
T d1ueya_          92 MAVNSIGKSLPSEAS  106 (127)
T ss_dssp             EEEESSCBCCCCSCC
T ss_pred             EEEcCCcCcCCcCCc
Confidence            999999999988643

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.6e-07  Score=59.27  Aligned_cols=60  Identities=13%  Similarity=0.189  Sum_probs=45.8

Q ss_pred             CCeEEEEEEecCCCCcceEEEEEEECCCCC--------C-CcceEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         68 PNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------P-SPMSNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        68 ~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~-~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ...+.|+|..+....+..|++.|+......        . ....+.   |.+++.|+|+|.|.|..|.|.|.
T Consensus        16 ts~i~v~W~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~p~   87 (94)
T d1fnfa1          16 TGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPI   87 (94)
T ss_dssp             SSCEEEEEECCSCSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEEETTEECCCE
T ss_pred             CCEEEEEeeCCCCCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEEEcCCCEeCCE
Confidence            456899999876666899999999875432        1 123454   55699999999999999998765

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-07  Score=60.28  Aligned_cols=69  Identities=17%  Similarity=0.179  Sum_probs=51.7

Q ss_pred             CCCCeEEEEEEecC----CCCcceEEEEEEECCCCCC------------CcceE---EecCCCeEEEEEEEEcCCCCCCC
Q psy15979         66 RLPNSYNITWMVSS----YTPLEEFKIKYRKIPGNEP------------SPMSN---QLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        66 ~~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~~~------------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ...+++.|.|..+.    +.++..|.+.|+.......            ....+   .|.+++.|.|+|+|.|..|.|.+
T Consensus        20 ~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~g~~   99 (109)
T d1va9a1          20 VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS   99 (109)
T ss_dssp             CSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEEEETTEECCC
T ss_pred             ecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEEEEEEEcCCcCCCC
Confidence            35789999999642    3588899999998754331            11233   46669999999999999999999


Q ss_pred             CCCccccc
Q psy15979        127 TNGGLIVP  134 (152)
Q Consensus       127 s~~~~~~~  134 (152)
                      |....+.+
T Consensus       100 S~~v~~~T  107 (109)
T d1va9a1         100 SSEINATT  107 (109)
T ss_dssp             CCCEECCC
T ss_pred             CCCEEEEc
Confidence            98765543

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.1e-08  Score=67.41  Aligned_cols=69  Identities=10%  Similarity=0.028  Sum_probs=48.5

Q ss_pred             CCCCeEEEEEEec---CCCCcceEEEEEEECCC----CCC------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIPG----NEP------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~---~~~pi~~y~~~~r~~~~----~~~------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ...+++.|.|..+   +..++..|.++|+....    ..+      ....+   .|.+++.|.|||+|.|..|.|+++..
T Consensus        27 vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~  106 (120)
T d1wfua_          27 VTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPV  106 (120)
T ss_dssp             EETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEEECSSSCEEECCC
T ss_pred             ecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeEEEEEEeCCcEeCCCCC
Confidence            4568999999864   23577888888764211    111      11234   46669999999999999999999977


Q ss_pred             ccccc
Q psy15979        130 GLIVP  134 (152)
Q Consensus       130 ~~~~~  134 (152)
                      ..+.+
T Consensus       107 ~~~~T  111 (120)
T d1wfua_         107 VSVAT  111 (120)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            75544

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=6.6e-08  Score=61.30  Aligned_cols=69  Identities=12%  Similarity=0.058  Sum_probs=50.2

Q ss_pred             CCCCeEEEEEEecC---CCCcceEEEEEEECCCCC---CCcceE---EecCCCeEEEEEEEEcCCCCCCCCCCccccc
Q psy15979         66 RLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNE---PSPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGGLIVP  134 (152)
Q Consensus        66 ~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~---~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~  134 (152)
                      .+.+++.|+|..+.   ...+..|.++|+..+...   .....+   .|.+++.|.|||.|.|..|.|.+|....+.+
T Consensus        14 ~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rV~A~n~~G~g~~S~~~~~~T   91 (94)
T d1x5aa1          14 KEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT   91 (94)
T ss_dssp             EETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEEEEEESSSEEEEESCCSSCEEEEEEEEECSSSCCCCCCCEEEEC
T ss_pred             cCCCEEEEEEecccCCCCCcEEEEEEEEecCCceEEEeeccCEEEECCCCCCCEEEEEEEEEcCCcCcCCCCCEEEEe
Confidence            35689999998642   245668999998765432   112334   4666999999999999999999987765443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.1e-08  Score=63.57  Aligned_cols=44  Identities=20%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             cccC-CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979          2 RLET-TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (152)
Q Consensus         2 ~l~~-~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (152)
                      +|.. ++++.+...++.+.|.|.+++.+|+|.|+|+|.|..+++.
T Consensus        45 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~s~~   89 (94)
T d1pd6a_          45 EIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE   89 (94)
T ss_dssp             EECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTEEECCE
T ss_pred             cceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeEEEEEE
Confidence            4544 4678888888899999999999999999999988655544

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.2e-07  Score=58.75  Aligned_cols=71  Identities=14%  Similarity=0.062  Sum_probs=50.3

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEEECCCCCCC------cceE---EecCCCeEEEEEEEEcCCCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS------PMSN---QLTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~------~~~~---~L~~~~~Y~~rV~A~N~~G~  123 (152)
                      +|.||..... ...+.+++.|+|..+....+..|.++|+........      ...+   .|.+++.|+|||+|++..|.
T Consensus         2 ~P~~P~nl~v-~~~~~~~v~l~W~~p~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frVRa~~~~~~   80 (95)
T d2b5ic1           2 IPWAPENLTL-HKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLC   80 (95)
T ss_dssp             ECCCCEEEEE-EEEETTEEEEEEECSSCSTTCEEEEEEEETTCSSCEEEEECSSCEEEECSCCTTSCEEEEEEEECCSSS
T ss_pred             CCcCCCCCEE-EEEeCCEEEEEECCCCCceeEEEEEEEEcCCCceeeEeeecccceeEcCCCCCCCEEEEEEEEeeCCCC
Confidence            5776654421 123468999999987667788999999988665422      1233   46679999999999987663


Q ss_pred             C
Q psy15979        124 G  124 (152)
Q Consensus       124 g  124 (152)
                      |
T Consensus        81 ~   81 (95)
T d2b5ic1          81 G   81 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.3e-07  Score=58.70  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ...+++.|+|..+. ..+..|.++|+.......        ....+.   |.+++.|.|||.|.|..|.|.++...
T Consensus        11 v~~~si~l~W~~p~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~s~~~~~~   85 (90)
T d1fnha1          11 VTPTSLSAQWTPPN-VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV   85 (90)
T ss_dssp             ECSSCEEEEEECCS-SCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEE
T ss_pred             ecCCEEEEEEEccc-eeccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCCCcCCEeEE
Confidence            45789999999764 467789999987754331        123444   56699999999999999999987543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.57  E-value=1e-08  Score=64.71  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=27.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ..++|.|.+++.+|+|.|+|+|+|.+|.+.+
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1          56 DEGSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             cceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            3567999999999999999999999998664

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.3e-07  Score=59.77  Aligned_cols=66  Identities=14%  Similarity=0.240  Sum_probs=48.2

Q ss_pred             CCeEEEEEEecCC------CCcceEEEEEEECCCCCCC------cceE---EecCCCeEEEEEEEEcCCC--CCCCCCCc
Q psy15979         68 PNSYNITWMVSSY------TPLEEFKIKYRKIPGNEPS------PMSN---QLTGTNQYQNRRLVRKRFD--RGNSTNGG  130 (152)
Q Consensus        68 ~~~~~L~W~~~~~------~pi~~y~~~~r~~~~~~~~------~~~~---~L~~~~~Y~~rV~A~N~~G--~g~~s~~~  130 (152)
                      ..++.|+|..+..      ..+..|.++|+..+...+.      ...+   .|.+++.|.|||+|+|..|  ||+.|...
T Consensus        20 ~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~~~~~~~i~~L~~~t~Y~frVRa~~~~~g~ws~wS~~v   99 (106)
T d1axib2          20 HADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVL   99 (106)
T ss_dssp             EEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCE
T ss_pred             cCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeecccceEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCE
Confidence            4579999997532      2457899999987665421      1233   5677999999999999776  69999887


Q ss_pred             ccc
Q psy15979        131 LIV  133 (152)
Q Consensus       131 ~~~  133 (152)
                      .+.
T Consensus       100 ~v~  102 (106)
T d1axib2         100 YVT  102 (106)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            653

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=98.55  E-value=6.2e-08  Score=60.54  Aligned_cols=79  Identities=9%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCC-CCcceEEEEEEECCCCCCCcceE---EecCCCeEEEEEEEEcCCC-CCCCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSY-TPLEEFKIKYRKIPGNEPSPMSN---QLTGTNQYQNRRLVRKRFD-RGNST  127 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~-~pi~~y~~~~r~~~~~~~~~~~~---~L~~~~~Y~~rV~A~N~~G-~g~~s  127 (152)
                      .|.+|..... .....+++.|+|..+.. ..+..|.+++...........++   .|.+++.|.|+|.|.|..| .|.+|
T Consensus         3 AP~~P~~l~~-~~~~~~sv~lsW~~p~~~~~i~~Y~i~~~~~~~~~~~~t~~~~~~L~p~t~Y~~~V~A~n~~G~~s~~S   81 (88)
T d1k85a_           3 APTAPTNLAS-TAQTTSSITLSWTASTDNVGVTGYDVYNGTALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAAS   81 (88)
T ss_dssp             SCCCCEEEEE-EEECSSCEEEEEECCSCCSSEEEEEEEESSSEEEEESSSEEEECCCCSSCEEEEEEEEEETTTEECCCC
T ss_pred             CcCCCCCcEE-EEecCCEEEEEEeCCCCCCCEEEEEEEccceEEEecCCCEEEECCCCCCCEEEEEEEEEECCCCcCCCC
Confidence            4555543321 12356899999997543 35777888643221111222344   4566999999999999999 68888


Q ss_pred             CCccc
Q psy15979        128 NGGLI  132 (152)
Q Consensus       128 ~~~~~  132 (152)
                      +...+
T Consensus        82 ~~v~v   86 (88)
T d1k85a_          82 NAVSV   86 (88)
T ss_dssp             CCEEE
T ss_pred             cCEEE
Confidence            76543

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.4e-07  Score=57.82  Aligned_cols=61  Identities=20%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      +.+++.|.|..+. .++..|.++|+.......        ...++.   |.+++.|+|+|.|.|..|.|.++.
T Consensus         9 t~~sv~l~W~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~~~s   80 (91)
T d1fnaa_           9 TPTSLLISWDAPA-VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASS   80 (91)
T ss_dssp             CSSCEEEECCCCS-SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCSSCSC
T ss_pred             CCCEEEEEEEccc-eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccCCCcC
Confidence            4689999999764 468899999998764431        123444   556999999999999999998764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.53  E-value=1.7e-08  Score=65.29  Aligned_cols=43  Identities=35%  Similarity=0.438  Sum_probs=33.7

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~   49 (152)
                      .+.|+.+.  ...+.|.|.+++.+|+|.|+|+|+|..|.....+.
T Consensus        50 ~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v~   92 (105)
T d1cs6a2          50 ADGRRFVS--QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVF   92 (105)
T ss_dssp             CCSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEE
T ss_pred             ccceeeee--cCCCEEeecccccccCcEEEEEEEECCCCEEEEEE
Confidence            34454443  33457999999999999999999999999887643

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.6e-08  Score=63.38  Aligned_cols=41  Identities=20%  Similarity=0.326  Sum_probs=30.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceE
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (152)
                      +|..+.+..+..+   +.|.|.+++.+|+|.|+|+|.|..|...
T Consensus        45 ~l~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          45 PLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             ECCCCSSSEEEET---TEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             cccCCCcEEEecC---CEEEEcccccccCcEEEEEEEECcCCEE
Confidence            4555544444333   3699999999999999999999887544

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.8e-07  Score=57.28  Aligned_cols=62  Identities=13%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------CcceEE---ecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------SPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|..+. .++..|.+.|+.......        ....+.   |.+++.|+|+|.|.|..|.|.++.
T Consensus        13 ~s~~s~~l~W~~p~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~   85 (90)
T d1tena_          13 VTDTTALITWFKPL-AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAK   85 (90)
T ss_dssp             CCSSCEEEEEECCS-SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             ecCCEEEEEEEeCc-eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeCCCEeCCEE
Confidence            35789999999754 578899999998764331        123444   566999999999999999998763

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.4e-08  Score=63.63  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=32.1

Q ss_pred             EeEEEEceeCCCCCE-EEEEEEEcCCCceEEEEEEe
Q psy15979         17 RHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~~~v~   51 (152)
                      .+.|.|.+++.+|+| +|+|.|+|.+|.+++.+.|.
T Consensus        69 ~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          69 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             eEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            457999999999999 69999999999999998875

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.7e-08  Score=62.51  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=32.1

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEec
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      ++|.|.+++.+|+|.|+|+|.|..|..+.++.|.+
T Consensus        59 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V   93 (101)
T d1iray1          59 EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF   93 (101)
T ss_dssp             TEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEeccceecCCEEEEEEEECCCCeEEEEEEEEE
Confidence            48999999999999999999999999998877764

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.7e-07  Score=57.71  Aligned_cols=75  Identities=9%  Similarity=0.057  Sum_probs=45.3

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecC---CC--CcceEEEEEEECCCCCCC----------cceE---EecCCCeEEEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSS---YT--PLEEFKIKYRKIPGNEPS----------PMSN---QLTGTNQYQNR  114 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~--pi~~y~~~~r~~~~~~~~----------~~~~---~L~~~~~Y~~r  114 (152)
                      +|.||..... .....+++.|+|..+.   ..  ....|.++|+........          ...+   .|.+++.|+||
T Consensus         1 kP~~P~~l~v-~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   79 (101)
T d1iarb2           1 KPRAPGNLTV-HTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR   79 (101)
T ss_dssp             CCCCCEEEEE-C----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEE
T ss_pred             CcccCCcCEE-EEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEE
Confidence            4666654321 1234689999998642   11  234599999887654311          1222   56779999999


Q ss_pred             EEEEcCCCCCCCCC
Q psy15979        115 RLVRKRFDRGNSTN  128 (152)
Q Consensus       115 V~A~N~~G~g~~s~  128 (152)
                      |+|+|..|.|.+|+
T Consensus        80 VrA~~~~g~g~wSe   93 (101)
T d1iarb2          80 VRAWAQAYNTTWSE   93 (101)
T ss_dssp             EEEECGGGTCCCCC
T ss_pred             EEEEcCCCCCCCcC
Confidence            99999999887664

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=7.6e-09  Score=66.59  Aligned_cols=69  Identities=16%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             CCCCeEEEEEEec--CCCCcceEEEEEEECCCCCC----------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP----------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~~----------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ...+++.|+|..+  .+.+|..|.++|+.......          ....+   .|.++ .|.|||+|.|..|.|++|+..
T Consensus        16 ~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-tY~~rV~A~n~~G~g~~S~~v   94 (102)
T d2dtge1          16 FENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPT   94 (102)
T ss_dssp             SSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCC
T ss_pred             ECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCCceeeeeeecccceEEEEEecccee-eEEEEEEEEcCCccCCCCCCE
Confidence            3568999999965  34578999999987654321          01223   35555 699999999999999999887


Q ss_pred             cc-ccc
Q psy15979        131 LI-VPK  135 (152)
Q Consensus       131 ~~-~~~  135 (152)
                      .| +|+
T Consensus        95 ~f~~~e  100 (102)
T d2dtge1          95 YFYVTD  100 (102)
T ss_dssp             EECCCC
T ss_pred             EEEccC
Confidence            44 444

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.3e-07  Score=58.79  Aligned_cols=70  Identities=21%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             ecCCCCceeecCCCCCCCCeEEEEEEecCC---CCcceEEEEEEECCCCCCC--------cceE---EecCCCeEEEEEE
Q psy15979         51 SGKPNPAIFRSHPQGRLPNSYNITWMVSSY---TPLEEFKIKYRKIPGNEPS--------PMSN---QLTGTNQYQNRRL  116 (152)
Q Consensus        51 ~~~P~p~~~~~~~~~~~~~~~~L~W~~~~~---~pi~~y~~~~r~~~~~~~~--------~~~~---~L~~~~~Y~~rV~  116 (152)
                      ..++.||.+..   ....+++.|+|..+..   ..+..|.++|+........        ...+   .|.+++.|+|||+
T Consensus         3 ~Vk~~Pp~l~v---~~~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVR   79 (100)
T d2gysa4           3 NIQMAPPSLQV---TKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVR   79 (100)
T ss_dssp             SBCCCCCEEEE---C---CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEE
T ss_pred             cccCCCCccEE---EECCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEE
Confidence            35667776443   2345789999987532   3566899999876544211        1223   4666999999999


Q ss_pred             EEcCCCC
Q psy15979        117 VRKRFDR  123 (152)
Q Consensus       117 A~N~~G~  123 (152)
                      |+|..|.
T Consensus        80 a~~~~g~   86 (100)
T d2gysa4          80 VRTSRTG   86 (100)
T ss_dssp             EEECCTT
T ss_pred             EEECCCC
Confidence            9999884

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.49  E-value=4.1e-07  Score=56.42  Aligned_cols=61  Identities=18%  Similarity=0.415  Sum_probs=48.0

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCCC-------cceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS-------PMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~-------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ...+++.|+|.++. .++..|.++|+......+.       ...+   .|.+++.|.|+|.|.|..|.|+|.
T Consensus        12 v~~~s~~l~W~~~~-~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~   82 (88)
T d1qr4a2          12 ITENSATVSWTPPR-SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPI   82 (88)
T ss_dssp             CCSSCEEEEECCCS-SCCSEEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTEECCCE
T ss_pred             ecCCEEEEEEEccc-EeeceEEEEEEeccCCceEEEEecCCccEEEECCCCCCCEEEEEEEEEeCCCCcCCE
Confidence            35789999999764 4788999999987665422       1334   466699999999999999999885

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.4e-07  Score=59.56  Aligned_cols=74  Identities=8%  Similarity=-0.074  Sum_probs=49.4

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCC-CCcceEEEEEEECCCCCC-------C-cce---EEecCCCeEEEEEEEEcC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSY-TPLEEFKIKYRKIPGNEP-------S-PMS---NQLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~-~pi~~y~~~~r~~~~~~~-------~-~~~---~~L~~~~~Y~~rV~A~N~  120 (152)
                      +|.||....- ......++.|+|..+.. .....|.++|+.......       . ...   ..|.+++.|.|||.|.|.
T Consensus         3 PP~~P~n~~~-~~~~~~si~~~W~p~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~   81 (95)
T d1bqua1           3 PPEKPKNLSC-IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENA   81 (95)
T ss_dssp             CCCCCEEEEE-EEETTSCCEEEEECCSCCSSCCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEET
T ss_pred             CcCCCeeeEE-EEccCCEEEEEEeCcccCCCceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEEeC
Confidence            4666654321 12346889999998532 233689999988754321       1 112   257779999999999999


Q ss_pred             CCCCCCC
Q psy15979        121 FDRGNST  127 (152)
Q Consensus       121 ~G~g~~s  127 (152)
                      +|.|+++
T Consensus        82 ~G~s~S~   88 (95)
T d1bqua1          82 LGKVTSD   88 (95)
T ss_dssp             TEEEECC
T ss_pred             CccccCC
Confidence            9999744

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=4.3e-07  Score=56.29  Aligned_cols=60  Identities=15%  Similarity=0.258  Sum_probs=46.7

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCCCC----------cceEE---ecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS----------PMSNQ---LTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~----------~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..+++.|+|..+. .++..|.++|+........          ..++.   |.+++.|.|+|.|.|..|.|+|+
T Consensus        13 ~~~sv~v~W~~p~-~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~   85 (92)
T d1tdqa2          13 TATSLDLEWDNSE-AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA   85 (92)
T ss_dssp             CSSCEEEEEECCS-SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             cCCEEEEEEEecC-CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEeCCCEecCE
Confidence            5689999999764 4688999999987654311          12344   66699999999999999999876

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=2.7e-08  Score=64.36  Aligned_cols=32  Identities=31%  Similarity=0.449  Sum_probs=28.7

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ...+.|.|.+++.+|+|.|+|+|+|.+|.+..
T Consensus        64 ~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~   95 (110)
T d1f97a2          64 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR   95 (110)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSSCCEE
T ss_pred             ecccceEECCCCccCCEEEEEEEEECCCcEEE
Confidence            34567999999999999999999999998876

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.3e-08  Score=66.28  Aligned_cols=37  Identities=30%  Similarity=0.470  Sum_probs=33.0

Q ss_pred             EeEEEEceeCCCC-CEEEEEEEEcCCCceEEEEEEecC
Q psy15979         17 RHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus        17 ~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      .+.|.|.+++.+| +|.|+|+|+|.+|+++..+.|...
T Consensus        68 ~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          68 ISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             EEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEE
Confidence            4679999999999 699999999999999998887654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.3e-08  Score=63.40  Aligned_cols=40  Identities=18%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL   48 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~   48 (152)
                      ++++.+..   +++|.|.+++.+|+|.|+|+|+|..|..+...
T Consensus        41 ~~~~~~~~---~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1          41 SPKYGLMG---RKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             SSSBCCTT---TTCEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             eeeeecce---eeEEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            45555543   34699999999999999999999999877643

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.4e-07  Score=56.27  Aligned_cols=65  Identities=9%  Similarity=0.074  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEEEecCCCCcceEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         65 GRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        65 ~~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+.+++.|+|..+. .++..|.+.|+..+...      ....++.   |.+++.|+|+|.|.|..|.|+++...
T Consensus        11 ~~t~~si~l~W~~p~-~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~~~s~~~~~~   84 (102)
T d2cuha1          11 NLTEGFAVLHWKPPQ-NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASIT   84 (102)
T ss_dssp             CCSSSCEEEEEECCS-SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTEECCCEEEE
T ss_pred             EeCCCEEEEEEEeee-ccceeeEEEEEeccccceeeeeeeeeeeEEEccEEeeEEEEEEEEEEeCCCCcCCEEEE
Confidence            345799999999754 46889999998765433      1123454   55599999999999999999876433

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.7e-07  Score=60.14  Aligned_cols=74  Identities=15%  Similarity=0.037  Sum_probs=46.8

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEec--CCCCcceEEEEEEECCCCC---------------CCcceE---EecCCCeEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNE---------------PSPMSN---QLTGTNQYQ  112 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~--~~~pi~~y~~~~r~~~~~~---------------~~~~~~---~L~~~~~Y~  112 (152)
                      +|.+|....-......++++++|.++  ++.++ .|.+.|.......               ....++   .|.+++.|.
T Consensus         4 PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~~-~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y~   82 (107)
T d1cd9b1           4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPT-SFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMA   82 (107)
T ss_dssp             CCCCCEEEEEEEETTTTEEEEEEECCSCCSSCC-EEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCEE
T ss_pred             ccCCCcCCEEEEecCCCEEEEEEcCCCCCCCCc-ceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCceEE
Confidence            46666643211123468999999974  34454 5777776543211               011234   366699999


Q ss_pred             EEEEEEcCCCCCCCC
Q psy15979        113 NRRLVRKRFDRGNST  127 (152)
Q Consensus       113 ~rV~A~N~~G~g~~s  127 (152)
                      |||.|.|.+|.|+++
T Consensus        83 frV~A~N~~G~s~S~   97 (107)
T d1cd9b1          83 IWVQAENMLGSSESP   97 (107)
T ss_dssp             EEEEEEETTEEEECC
T ss_pred             EEEEEEeCCccccCC
Confidence            999999999999744

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.6e-07  Score=55.84  Aligned_cols=63  Identities=14%  Similarity=0.145  Sum_probs=47.6

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      ...+++.|+|..+. .++..|.+.|+..+...      ....++.   |.+++.|.|+|.|.|..|.|.++..
T Consensus        13 ~~~~sv~l~W~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~   84 (93)
T d2cuma1          13 VTPRTALLTWTEPP-VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVST   84 (93)
T ss_dssp             CCSSCEEEEEECCS-SCCSEEEEEEECTTSCEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTTBCCCCEEE
T ss_pred             eCCCEEEEEEEccc-cccccEEEEEEccccccEEEEECCCccEEEEeCccCCCEEEEEEEEEeCCCCCCCEEE
Confidence            34689999999764 46889999998765432      1123444   6669999999999999999988643

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.6e-08  Score=62.78  Aligned_cols=69  Identities=22%  Similarity=0.269  Sum_probs=50.5

Q ss_pred             CCCCeEEEEEEecC----CCCcceEEEEEEECCCCC-------CC-cceE---EecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979         66 RLPNSYNITWMVSS----YTPLEEFKIKYRKIPGNE-------PS-PMSN---QLTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus        66 ~~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~~-------~~-~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ...+++.|.|..+.    +.+|..|.++|+......       .. ..++   .|.+++.|+|+|.|.|..|.|.+|...
T Consensus        23 ~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~G~~S~~~  102 (119)
T d1x5ha1          23 RNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL  102 (119)
T ss_dssp             CSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECEEEETTEEEEECCCE
T ss_pred             ecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEEEEcCCcCCCCCCCE
Confidence            34689999999642    247889999998765422       11 1334   466699999999999999999988766


Q ss_pred             cccc
Q psy15979        131 LIVP  134 (152)
Q Consensus       131 ~~~~  134 (152)
                      .+.+
T Consensus       103 ~~~T  106 (119)
T d1x5ha1         103 SAET  106 (119)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            5533

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.4e-07  Score=56.71  Aligned_cols=60  Identities=18%  Similarity=0.275  Sum_probs=45.9

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC-------C-CcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-------P-SPMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-------~-~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..+++.|+|..+. .++..|.++|+..+...       . ....+   .|.+++.|+|+|.|.|..|.|+|.
T Consensus        13 ~~~s~~l~W~~p~-~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~g~S~p~   83 (89)
T d1fnha3          13 TPNSLLVSWQPPR-ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL   83 (89)
T ss_dssp             ETTEEEEEEECCS-SCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSSCEEEEE
T ss_pred             cCCEEEEEEeCCC-cCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCCCEeCCE
Confidence            4689999999764 47889999999765432       1 11334   466699999999999999988764

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.4e-07  Score=55.14  Aligned_cols=62  Identities=13%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCCC--------cceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS--------PMSN---QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~--------~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .+.+++.|+|..+. .++..|.+.|+........        ..++   .|.+++.|.|+|.|.|..|.|+|..
T Consensus        12 vt~~sv~l~W~~p~-~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~~   84 (89)
T d1fnfa3          12 ITANSFTVHWIAPR-ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI   84 (89)
T ss_dssp             CCSSEEEEEEECCS-SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             ecCCEEEEEEEeCC-CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCCcCcCCEE
Confidence            45789999999764 4688999999876544311        1334   4666999999999999999998753

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.3e-07  Score=57.89  Aligned_cols=79  Identities=14%  Similarity=0.113  Sum_probs=52.0

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecCC--------CCcceEEEEEEECCCCCCC---------cceE---EecCCCeE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSY--------TPLEEFKIKYRKIPGNEPS---------PMSN---QLTGTNQY  111 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~~--------~pi~~y~~~~r~~~~~~~~---------~~~~---~L~~~~~Y  111 (152)
                      .+|.||.....  ....+++.|+|..+..        ..+..|.++|+........         ...+   .|.+++.|
T Consensus         4 vkP~pP~nl~v--~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y   81 (114)
T d2gysa2           4 VQPPEPRDLQI--STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTY   81 (114)
T ss_dssp             BCCCCCEEEEE--EEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEE
T ss_pred             ccCCcCCCeEE--EEeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEE
Confidence            46777765432  2346789999997521        1245799999987654311         1223   36669999


Q ss_pred             EEEEEEEcCCCC------CCCCCCccc
Q psy15979        112 QNRRLVRKRFDR------GNSTNGGLI  132 (152)
Q Consensus       112 ~~rV~A~N~~G~------g~~s~~~~~  132 (152)
                      +|||+|+|..|.      |+.|....+
T Consensus        82 ~~rVRa~~~~g~~~~g~wS~WS~~v~~  108 (114)
T d2gysa2          82 VARVRTRLAPGSRLSGRPSKWSPEVCW  108 (114)
T ss_dssp             EEEEEEEECTTSSCCBCCCCCCCCEEE
T ss_pred             EEEEEEEeCCCCCCCCCccCCcCCEee
Confidence            999999999985      455555544

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=7.8e-07  Score=55.29  Aligned_cols=61  Identities=15%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCC-------CcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP-------SPMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~-------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ...+++.|+|..+. .++..|.++|+.......       ....+   .|.+++.|+|+|.|.|..|.|.|.
T Consensus        13 ~~~~si~v~W~~p~-~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~p~   83 (90)
T d1fnha2          13 ATETTITISWRTKT-ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV   83 (90)
T ss_dssp             ECSSEEEEEEECCS-SCCCCEEEEEEESSSSCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEETTEECCCE
T ss_pred             ecCCEEEEEEECCC-CCCceeEEEEEEccCCceEEEecCCCccEEEeCCCCCCcEEEEEEEEEeCCCCcCCE
Confidence            45789999999654 478899999998755431       11233   477799999999999999999865

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.42  E-value=1.5e-07  Score=58.84  Aligned_cols=39  Identities=15%  Similarity=0.195  Sum_probs=30.9

Q ss_pred             EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE-EEEEe
Q psy15979         13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (152)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~~~v~   51 (152)
                      .......|.|.+++.+|+|.|+|+|.|..|...+ .+.|.
T Consensus        44 ~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~   83 (88)
T d2fcba2          44 FSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT   83 (88)
T ss_dssp             EESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence            3345678999999999999999999999997654 34443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=6.1e-08  Score=61.95  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=30.1

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ++|.|.+++.+|+|.|+|.|.|..|.+...+.|.
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~  101 (105)
T d1nbqa1          68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK  101 (105)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEE
T ss_pred             ceEEEecccccceeeEEEEEEECCCCEEEEEEEE
Confidence            4799999999999999999999999998865543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=6.8e-08  Score=60.83  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=27.7

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      ++|.|.+++.+|+|.|+|.|.|..|.......|
T Consensus        56 ~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i   88 (92)
T d1epfa2          56 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI   88 (92)
T ss_dssp             SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEE
T ss_pred             eeEEECCCCHHhCEEEEEEEEECcCCEEEEEEE
Confidence            469999999999999999999998876554333

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4e-08  Score=61.81  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             cCCEeEEEEceeCCCCCE-EEEEEEEcCCCceEEEEEEe
Q psy15979         14 RGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ......|.|.+++.+|.| .|+|+|+|.+|.++.++.|.
T Consensus        52 ~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          52 GLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             CSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred             eccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence            456778999999999999 79999999999999887764

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.2e-07  Score=56.80  Aligned_cols=69  Identities=14%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             CCCCeEEEEEEecC------CCCcceEEEEEEECCCCCC-------CcceE---EecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSS------YTPLEEFKIKYRKIPGNEP-------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~~------~~pi~~y~~~~r~~~~~~~-------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .+..++.|+|..+.      ...+..|.+.|+..+....       ....+   .|.+++.|.|||.|.|..|.|.+|+.
T Consensus        13 ~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~s~~S~~   92 (100)
T d1x5ja1          13 LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT   92 (100)
T ss_dssp             EETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEEECSSCBCCCCCC
T ss_pred             ecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEEEeCCcCcCCCCe
Confidence            35799999998632      1345678888876654331       11334   46669999999999999999999988


Q ss_pred             ccccc
Q psy15979        130 GLIVP  134 (152)
Q Consensus       130 ~~~~~  134 (152)
                      ..+++
T Consensus        93 ~~~~T   97 (100)
T d1x5ja1          93 AHGTT   97 (100)
T ss_dssp             CCEEC
T ss_pred             EEEEe
Confidence            76654

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.8e-06  Score=54.92  Aligned_cols=81  Identities=9%  Similarity=0.002  Sum_probs=50.0

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC---CCCcceEEEEEEECCCCC-------CC-cceEE---ecCCCeEEEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNE-------PS-PMSNQ---LTGTNQYQNRRLV  117 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~-------~~-~~~~~---L~~~~~Y~~rV~A  117 (152)
                      ++|.||.............+.+.|..+.   ...+..|.++|+..+...       .. ..++.   |.+++.|.|||+|
T Consensus         3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRa   82 (105)
T d1erna2           3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA   82 (105)
T ss_dssp             BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEE
Confidence            4677776543222223467999998743   245668999999876443       11 12343   5669999999999


Q ss_pred             EcCC--C---CCCCCCCccc
Q psy15979        118 RKRF--D---RGNSTNGGLI  132 (152)
Q Consensus       118 ~N~~--G---~g~~s~~~~~  132 (152)
                      ++..  |   ||+.|....+
T Consensus        83 r~~~~~~~G~WSeWS~~v~~  102 (105)
T d1erna2          83 RMAEPSFGGFWSAWSEPVSL  102 (105)
T ss_dssp             EECSSSCCBCCCCCCCCEEE
T ss_pred             EECCCCCCCCCCCCCCCEEe
Confidence            9653  3   4566665543

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.6e-07  Score=59.35  Aligned_cols=82  Identities=11%  Similarity=0.101  Sum_probs=48.9

Q ss_pred             cCCCCceeecCCCCCCCCeEEEEEEecC----CCCcceEEEEEEECCCCC-------C-C-cceEE---ecCCCeEEEEE
Q psy15979         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS----YTPLEEFKIKYRKIPGNE-------P-S-PMSNQ---LTGTNQYQNRR  115 (152)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~~-------~-~-~~~~~---L~~~~~Y~~rV  115 (152)
                      ++|.||............++.|+|..+.    +..+..|.+.|+-.....       . . ...+.   |.+++.|+|+|
T Consensus         9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~v~V   88 (117)
T d2cspa1           9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTADSTAVELVRLRSLEAKGVTV   88 (117)
T ss_dssp             CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSEEEEECCTTCSEEEEESHHHHHHTCSCBEE
T ss_pred             CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeecccceeeeeeccceeeeeccCCCCCcEEEEEE
Confidence            4566665543222234568999998642    122333444444322111       1 1 13444   55599999999


Q ss_pred             EEEcCCCCCCCCCCcccc
Q psy15979        116 LVRKRFDRGNSTNGGLIV  133 (152)
Q Consensus       116 ~A~N~~G~g~~s~~~~~~  133 (152)
                      .|.|..|.|.+|....+.
T Consensus        89 ~A~n~~G~s~~S~~v~i~  106 (117)
T d2cspa1          89 RTLSAQGESVDSAVAAVP  106 (117)
T ss_dssp             EEEESSCCCCCCSCBCCC
T ss_pred             EEEcCCCcCCCCCCEEee
Confidence            999999999988776553

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-06  Score=55.29  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             cCCCCceeecC-CCCCCCCeEEEEEEecC-----CCCcceEEEEEEECCCCCCC------cceEE---ecCCCeEEEEEE
Q psy15979         52 GKPNPAIFRSH-PQGRLPNSYNITWMVSS-----YTPLEEFKIKYRKIPGNEPS------PMSNQ---LTGTNQYQNRRL  116 (152)
Q Consensus        52 ~~P~p~~~~~~-~~~~~~~~~~L~W~~~~-----~~pi~~y~~~~r~~~~~~~~------~~~~~---L~~~~~Y~~rV~  116 (152)
                      ++|.||..... .......++.|+|..+.     ...+..|.++++........      ...+.   |.+++.|.|||+
T Consensus         6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~rVr   85 (109)
T d1uc6a_           6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVA   85 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEESSCSEEEETTCCSSSCEEEEEE
T ss_pred             EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccCCceeEEeCCCCCCCEEEEEEE
Confidence            46888754422 22335688999999752     12356799999887654421      23444   555999999999


Q ss_pred             EEcCCC--CCCCCCCccccc
Q psy15979        117 VRKRFD--RGNSTNGGLIVP  134 (152)
Q Consensus       117 A~N~~G--~g~~s~~~~~~~  134 (152)
                      |+|.++  ||+.|.....+|
T Consensus        86 A~~~~~g~wS~WS~~~~~tt  105 (109)
T d1uc6a_          86 AKDNEIGTWSDWSVAAHATP  105 (109)
T ss_dssp             CCBSSSCCCCCCCEEEEECC
T ss_pred             EEECCCCCcCCCCCCEEeEC
Confidence            999754  356665555544

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=1.9e-07  Score=59.39  Aligned_cols=33  Identities=18%  Similarity=0.417  Sum_probs=29.3

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      ++|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus        65 ~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v   97 (102)
T d1f97a1          65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI   97 (102)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEE
T ss_pred             CEEEEeECCccCCEEEEEEEEECCCCEEEEEEE
Confidence            479999999999999999999999998776444

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.7e-08  Score=60.68  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      ..+++|+|.+++.+|+|.|+|.|.|..|+.+..+.|
T Consensus        57 ~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~~~l~V   92 (93)
T d1ccza1          57 TVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV   92 (93)
T ss_dssp             TTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEE
T ss_pred             CCeeEEEEEecChhhCEEEEEEEECCCcEEEEEEEE
Confidence            445789999999999999999999999988877665

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.4e-07  Score=56.08  Aligned_cols=69  Identities=10%  Similarity=0.059  Sum_probs=44.8

Q ss_pred             eEEEEEEecCCCCcceEEEEEEECCCCCCCc---------c-----eEEecCCCeEEEEEEEEcCCCCCCCCCCcccccc
Q psy15979         70 SYNITWMVSSYTPLEEFKIKYRKIPGNEPSP---------M-----SNQLTGTNQYQNRRLVRKRFDRGNSTNGGLIVPK  135 (152)
Q Consensus        70 ~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~~---------~-----~~~L~~~~~Y~~rV~A~N~~G~g~~s~~~~~~~~  135 (152)
                      ...|+|..+....-..|.+++..........         .     ...|..++.|.|||+|.|..|.|+++.+.-+++ 
T Consensus        15 ~~~L~W~pP~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~~g~S~ws~s~~f~~-   93 (98)
T d1fyhb1          15 NPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAV-   93 (98)
T ss_dssp             CCEEEEECCCCSSCCEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEETTEECCCEECCCBCH-
T ss_pred             cEEEEECCCCCCCCCceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcCCcccCCccCCCcEE-
Confidence            4569999864333334666666554332110         1     113556899999999999999999998776553 


Q ss_pred             ccccc
Q psy15979        136 AKREG  140 (152)
Q Consensus       136 ~~~~~  140 (152)
                       .|+|
T Consensus        94 -~~~~   97 (98)
T d1fyhb1          94 -CRDG   97 (98)
T ss_dssp             -HHHS
T ss_pred             -eecC
Confidence             3444

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.33  E-value=1.7e-06  Score=53.29  Aligned_cols=61  Identities=13%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC------CCcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+.+++.|+|..+. .++..|.+.|+......      ....++   .|.+++.|.|+|.|.|..|.|.|+
T Consensus        11 ~t~~sv~v~W~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~~~   80 (87)
T d1qr4a1          11 PTETTLSLRWRRPV-AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPT   80 (87)
T ss_dssp             CCSSEEEEEEECCS-SCCSEEEEEEECTTCCEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSCBCCCE
T ss_pred             ecCCEEEEEEECCC-CCcceeEEEeecCCcceeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCCCccCE
Confidence            35689999999764 46889999998765432      111334   466699999999999999999876

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=6.6e-07  Score=55.81  Aligned_cols=63  Identities=11%  Similarity=0.159  Sum_probs=47.4

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC--------CCcceEE---ecCCCeEEEEEEEEcCCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------PSPMSNQ---LTGTNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~~~~~~~---L~~~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .+.+++.|+|..+. .++..|.++|+......        ....++.   |.+++.|.|+|.|.|..|.|.|...
T Consensus        13 vt~~sv~l~W~~p~-~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~S~p~~~   86 (94)
T d1j8ka_          13 VDVDSIKIAWESPQ-GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIG   86 (94)
T ss_dssp             EETTEEEEECCCCS-SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSSCCCCCEEE
T ss_pred             ecCCEEEEEEeCCC-ccccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCCCCcCCEEE
Confidence            34689999999764 46889999998765432        1123444   6669999999999999999987643

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.5e-08  Score=62.54  Aligned_cols=32  Identities=38%  Similarity=0.551  Sum_probs=28.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      ..+.|.|.+++.+|+|.|+|+|+|.+|++..+
T Consensus        64 ~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s   95 (104)
T d1nbqa2          64 TTGELVFDPLSASDTGEYSCEARNGYGTPMTS   95 (104)
T ss_dssp             TTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             cccceEECCCCcccCcEEEEEEEECCCceEEE
Confidence            34679999999999999999999999998774

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=6.6e-07  Score=56.48  Aligned_cols=62  Identities=11%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCC--------C--------CcceE---EecCCCeEEEEEEEEcCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--------P--------SPMSN---QLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--------~--------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ...+++.|+|..+. .++..|.++|+......        .        ...++   .|++++.|+|+|.|.|..|.|++
T Consensus        15 ~t~~sv~v~W~pp~-~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~~V~a~~~~g~g~~   93 (101)
T d2cuia1          15 VTTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS   93 (101)
T ss_dssp             CCSSCEEEECCCCT-TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECSSSEEEE
T ss_pred             ECCCEEEEEEEecc-ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCEEEEEEEEEeCCcEeCC
Confidence            35789999998654 46889999998765332        0        11233   47779999999999999999987


Q ss_pred             CC
Q psy15979        127 TN  128 (152)
Q Consensus       127 s~  128 (152)
                      +.
T Consensus        94 ~~   95 (101)
T d2cuia1          94 IQ   95 (101)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.9e-06  Score=53.41  Aligned_cols=80  Identities=15%  Similarity=0.004  Sum_probs=49.5

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCC----CCcceEEEEEEECCCCC--------CC-cceEE---ecCCCeEEEEEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSY----TPLEEFKIKYRKIPGNE--------PS-PMSNQ---LTGTNQYQNRRL  116 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~----~pi~~y~~~~r~~~~~~--------~~-~~~~~---L~~~~~Y~~rV~  116 (152)
                      ++.||..... ...+.+++.|+|..+..    ..+..|.++|+......        .. ...+.   |.+++.|+|||+
T Consensus         2 rl~pP~~l~v-~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   80 (104)
T d2b5ib2           2 RLMAPISLQV-VHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVR   80 (104)
T ss_dssp             CCCCCEEEEE-EEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEE
T ss_pred             ccCCCCCcEE-EEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEE
Confidence            4455543321 12356899999987532    34557888887665432        11 12333   666999999999


Q ss_pred             EEcCCCC----CCCCCCcccc
Q psy15979        117 VRKRFDR----GNSTNGGLIV  133 (152)
Q Consensus       117 A~N~~G~----g~~s~~~~~~  133 (152)
                      |+|..|.    |+.|....+.
T Consensus        81 a~~~~g~~g~wS~wS~~v~~~  101 (104)
T d2b5ib2          81 VKPLQGEFTTWSPWSQPLAFR  101 (104)
T ss_dssp             EEESCCSSCCCCCCCCCEEEE
T ss_pred             EEECCCCCCCCCCCcCCEEEE
Confidence            9999984    4555554443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-07  Score=58.74  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             cccCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         2 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      +|..+++.....   +.+|.|.+++.+|+|.|+|.|.|..+.
T Consensus        47 ~l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~~   85 (93)
T d1n26a1          47 AAGSHPSRWAGM---GRRLLLRSVQLHDSGNYSCYRAGRPAG   85 (93)
T ss_dssp             SSSCCCEEEEEE---SSEEEECSCCGGGCEEEEEESSSSCSC
T ss_pred             cccceeeEEecC---CCEEEECCCChhcCEEEEEEECCcccc
Confidence            455556655443   347999999999999999999997644

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.30  E-value=7.6e-08  Score=61.02  Aligned_cols=30  Identities=33%  Similarity=0.480  Sum_probs=26.5

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ...|.|..++.+|+|.|+|+|+|.+|.+.+
T Consensus        61 ~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S   90 (97)
T d1cs6a1          61 GDLVISNPVKAKDAGSYQCVATNARGTVVS   90 (97)
T ss_dssp             TEEEEESCCHHHHCEEEEEEEEETTEEEEC
T ss_pred             eeEEEEecccccCCEEEEEEEEECCCEEEE
Confidence            357889999999999999999999998654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.4e-07  Score=58.00  Aligned_cols=40  Identities=18%  Similarity=0.259  Sum_probs=31.6

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCCCceEE---EEEEecCC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP   54 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~~~v~~~P   54 (152)
                      .....|.|.+++.+|+|+|.|+|.|..|...+   .+.|...|
T Consensus        46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          46 YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence            34568999999999999999999999886554   35555544

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.9e-07  Score=58.90  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ...|.|.+++.+|+|.|+|.|+|..|...+
T Consensus        64 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s   93 (104)
T d2aw2a1          64 FFILHFEPVLPNDNGSYRCSANFQSNLIES   93 (104)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEEEEEccccHHHCCeEEEEEEcCCCeEEE
Confidence            456999999999999999999999998654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.4e-07  Score=57.63  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=27.9

Q ss_pred             EEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         20 LMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +.|.+++.+|+|.|+|+|.|.+|+++..+.|.
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~   80 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQGEVTREVTVN   80 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeeeccccCCCCEEEEEEEcCCCEEEEEEEEE
Confidence            45678999999999999999999998877665

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=5.2e-07  Score=57.52  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=33.4

Q ss_pred             CCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEE--EEEE
Q psy15979          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLEL   50 (152)
Q Consensus         5 ~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~~~v   50 (152)
                      .++|+.+..   +++|.|.+++.+|+|.|+|.+.|..|....  ++.|
T Consensus        50 ~~~~~~~~~---ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L   94 (98)
T d1hnga1          50 KSGAFEILA---NGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL   94 (98)
T ss_dssp             SSTTEEECT---TSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEE
T ss_pred             CCCeEEECC---CccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEE
Confidence            345666542   347999999999999999999999998744  4444

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=3.3e-06  Score=51.91  Aligned_cols=60  Identities=15%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC------CCcceE---EecCCCeEEEEEEEEcCCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PSPMSN---QLTGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..+++.|+|..+. .++..|.+.|+......      .....+   .|.+++.|.|+|.|.|..|.|.|+
T Consensus        13 ~~~s~~l~W~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~s~p~   81 (86)
T d1tdqa3          13 SETSISLIWTKAS-GPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES   81 (86)
T ss_dssp             CSSCEEEEEECCC-SCCSEEEEEEECSSSCCEEEEEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCE
T ss_pred             cCCEEEEEEeCCC-CCccceEEEEecccccceEEEeCCCccEEEECCCccccEEEEEEEEEcCCCEECCE
Confidence            4688999999864 47889999998765433      112334   466699999999999999998775

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=3.9e-06  Score=52.26  Aligned_cols=62  Identities=10%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             CCCCeEEEEEEecCCCCcceEEEEEEECCCCCC--------CcceE---EecCCCeEEEEEEEEcCCCCCCCCC
Q psy15979         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEP--------SPMSN---QLTGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~--------~~~~~---~L~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      ...+++.|+|..+. .++..|.+.|+.......        ....+   .|.+++.|+|+|.|.|..|.|+++.
T Consensus        15 v~~~si~v~W~~p~-~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~~~   87 (93)
T d1tdqa1          15 VSDTVAFVEWTPPR-AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASS   87 (93)
T ss_dssp             ECSSCEEEEEECCS-SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             eCCCEEEEEEEccc-cCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEeCCCCcCCEE
Confidence            34689999999754 478899999998765431        12344   4666999999999999999998763

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.7e-06  Score=56.65  Aligned_cols=69  Identities=10%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             CCCCeEEEEEEecCC-----------CCcceEEEEEEECCCCCC-------CcceE---EecCCCeEEEEEEEEcCCCCC
Q psy15979         66 RLPNSYNITWMVSSY-----------TPLEEFKIKYRKIPGNEP-------SPMSN---QLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        66 ~~~~~~~L~W~~~~~-----------~pi~~y~~~~r~~~~~~~-------~~~~~---~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ...+++.|+|..+..           ..+..|.+.++.......       ....+   .|.+++.|+|+|.|.|..|.|
T Consensus        29 v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~P~t~Y~f~V~A~n~~G~g  108 (137)
T d1wk0a_          29 IQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKG  108 (137)
T ss_dssp             CCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEECEEEEEEETTEEC
T ss_pred             eEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECCCCCCcEEEEEEEEEcCCccc
Confidence            457999999996421           145568887765543321       11334   366699999999999999999


Q ss_pred             CCCCCccccc
Q psy15979        125 NSTNGGLIVP  134 (152)
Q Consensus       125 ~~s~~~~~~~  134 (152)
                      +++....+..
T Consensus       109 ~~S~~~~~~T  118 (137)
T d1wk0a_         109 TPSEAEIFTT  118 (137)
T ss_dssp             CCCCCCCEEC
T ss_pred             CCCCCEEEEC
Confidence            9998665533

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.17  E-value=6.2e-07  Score=56.09  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=26.8

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      ....|.|.+++.+|+|.|+|+|.|..|...+
T Consensus        49 ~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2          49 HNSDFHIPKATLKDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             ECCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             cccccEECccceeccceEEEEEEeCCCCeEE
Confidence            3457999999999999999999999986543

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=1e-06  Score=57.71  Aligned_cols=47  Identities=26%  Similarity=0.276  Sum_probs=37.0

Q ss_pred             CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEecC
Q psy15979          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (152)
Q Consensus         7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~~~   53 (152)
                      .|..+..   ..+..+|.|.+++.+|+|.|.|.+.|..|..+..+.|.+.
T Consensus        67 ~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          67 GRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             TSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeEEEeeccccCCeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            3555542   2346789999999999999999999999988887776653

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.3e-06  Score=54.91  Aligned_cols=68  Identities=15%  Similarity=0.174  Sum_probs=49.0

Q ss_pred             CCCeEEEEEEecC----CCCcceEEEEEEECCCCCC---------------CcceE---EecCCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVSS----YTPLEEFKIKYRKIPGNEP---------------SPMSN---QLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~~----~~pi~~y~~~~r~~~~~~~---------------~~~~~---~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..+++.|+|..+.    ..++..|.+.|+.......               ....+   .|.+++.|+|||.|.|..|.|
T Consensus        27 ~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g  106 (125)
T d1uena_          27 NSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEG  106 (125)
T ss_dssp             ETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEEEEEEEEEESSCEE
T ss_pred             cCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCEEEEEEEEEeCCccc
Confidence            4689999999642    3577888888876543220               01223   466699999999999999999


Q ss_pred             CCCCCccccc
Q psy15979        125 NSTNGGLIVP  134 (152)
Q Consensus       125 ~~s~~~~~~~  134 (152)
                      .+|....+..
T Consensus       107 ~~S~~~~~~T  116 (125)
T d1uena_         107 PASPDRVFNT  116 (125)
T ss_dssp             EECCCEEEEC
T ss_pred             CCCCCEEEEC
Confidence            9988766544

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.11  E-value=1.5e-06  Score=56.50  Aligned_cols=43  Identities=21%  Similarity=0.228  Sum_probs=33.5

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCE---EEEEEEEcCCCceEEEEEEec
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFG---NYSCEATNPMGKHRAYLELSG   52 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G---~YtC~A~N~~G~~~~~~~v~~   52 (152)
                      .++.+.   ..++|.|.+++.+|+|   .|+|.|+|.+|.++..+.+..
T Consensus        55 ~~~~~~---~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~  100 (111)
T d1biha2          55 RRITAG---PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  100 (111)
T ss_dssp             TTEEEC---TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             eeeccc---cccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEE
Confidence            344443   3457999999999887   699999999999988765543

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5e-06  Score=52.74  Aligned_cols=75  Identities=12%  Similarity=0.047  Sum_probs=49.7

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCC-CCcceEEEEEEECCCCCCCc-------ce-------EEecCCCeEEEEEEE
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSY-TPLEEFKIKYRKIPGNEPSP-------MS-------NQLTGTNQYQNRRLV  117 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~-~pi~~y~~~~r~~~~~~~~~-------~~-------~~L~~~~~Y~~rV~A  117 (152)
                      .|.|+.+...   .......|.|.++.. .....|.++|+......+..       ..       ..|..+..|.|||.|
T Consensus         4 lP~P~nv~~~---s~n~~~~L~W~pp~~~g~~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA   80 (99)
T d1y6kr1           4 LPSPPSVWFE---AEFFHHILHWTPIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRA   80 (99)
T ss_dssp             CCCCSCEEEE---EETTEEEEEECCCTTCCTTCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEE
T ss_pred             CCCCCcceEE---EECCEEEEEEcCCCCcCCCCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEE
Confidence            4556544421   223568899997543 34467999999886654321       11       124447899999999


Q ss_pred             EcCCCCCCCCCCc
Q psy15979        118 RKRFDRGNSTNGG  130 (152)
Q Consensus       118 ~N~~G~g~~s~~~  130 (152)
                      .|..|.|+.+...
T Consensus        81 ~n~~g~S~Ws~t~   93 (99)
T d1y6kr1          81 VDGSRHSQWTVTN   93 (99)
T ss_dssp             EETTEECCCEECS
T ss_pred             EcCCCcCCCcccC
Confidence            9999999887543

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.2e-06  Score=57.55  Aligned_cols=70  Identities=14%  Similarity=0.122  Sum_probs=48.3

Q ss_pred             CCCCeEEEEEEecC---CCCcceEEEEEEECCCCC-------------------------------CCcceE---EecCC
Q psy15979         66 RLPNSYNITWMVSS---YTPLEEFKIKYRKIPGNE-------------------------------PSPMSN---QLTGT  108 (152)
Q Consensus        66 ~~~~~~~L~W~~~~---~~pi~~y~~~~r~~~~~~-------------------------------~~~~~~---~L~~~  108 (152)
                      .+++++.|+|..+.   ...|..|.|.|++.....                               ....++   .|.++
T Consensus        13 ~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~   92 (125)
T d2dtge3          13 TSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPW   92 (125)
T ss_dssp             ECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECSCCSS
T ss_pred             ecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCEEEECCCccC
Confidence            35789999999742   357889999998754321                               001223   35569


Q ss_pred             CeEEEEEEEEcCCCC-----CCCCCCcccccc
Q psy15979        109 NQYQNRRLVRKRFDR-----GNSTNGGLIVPK  135 (152)
Q Consensus       109 ~~Y~~rV~A~N~~G~-----g~~s~~~~~~~~  135 (152)
                      +.|.|+|.|.|..|.     |..|+-..+.++
T Consensus        93 T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          93 TQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             CBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             CEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            999999999999995     555655555443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8.5e-07  Score=54.52  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ....|.|.+++.+|+|.|.|.|.|..+++...+.|.
T Consensus        46 ~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~v~l~V~   81 (82)
T d1f2qa1          46 TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF   81 (82)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEE
T ss_pred             ccceeEECCCChhhCCcEEEEecCCCCcccEEEEEE
Confidence            456799999999999999999999888877666553

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.03  E-value=1e-06  Score=54.41  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=28.5

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~   49 (152)
                      ....|.|.+++.+|+|.|+|.|.|..+++...+.
T Consensus        50 ~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~~v~L~   83 (84)
T d1fnla1          50 QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLE   83 (84)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEE
T ss_pred             cceeeEecCCcccCCEEEEEEccCCCccccEEEE
Confidence            4568999999999999999999998877655544

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.98  E-value=9.6e-07  Score=54.58  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=30.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      ....|.|.+++.+|+|.|+|+|.|..+++...+.|.
T Consensus        49 ~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~v~l~V~   84 (85)
T d2fcba1          49 HTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL   84 (85)
T ss_dssp             CCSSEEEEECCGGGCEEEEEECTTSBCCCCEEEEEE
T ss_pred             cccceEEeeccccCCcEEEEECCCCcccccEEEEEE
Confidence            456799999999999999999999988877666653

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.5e-06  Score=52.82  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      +.+.|.....+|+|.|+|+|+|.+|...+
T Consensus        49 ~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S   77 (85)
T d1rhfa2          49 SPSVLNVTGVTQSTMFSCEAHNLKGLASS   77 (85)
T ss_dssp             SSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred             cceEEecCCccccEEEEEEEEcCCCcEEE
Confidence            44666677778999999999999997654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.6e-06  Score=55.65  Aligned_cols=35  Identities=11%  Similarity=0.021  Sum_probs=29.4

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v   50 (152)
                      ..+.|.|..+..+|.|+|+|+|+|.+|.....+.+
T Consensus        58 ~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~   92 (103)
T d1iama1          58 AEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFE   92 (103)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEE
T ss_pred             ceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEee
Confidence            45689999999999999999999999987654443

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5e-06  Score=53.77  Aligned_cols=45  Identities=18%  Similarity=0.392  Sum_probs=35.1

Q ss_pred             CcEEEEE---cCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|..+..   ..+..+|+|.+++.+|+|.|.|.+.|..|.....+.|.
T Consensus        74 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~  121 (124)
T d1eaja_          74 GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV  121 (124)
T ss_dssp             TTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cceEEEccCCCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEE
Confidence            4555532   22346799999999999999999999998887776664

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=6.1e-06  Score=53.22  Aligned_cols=42  Identities=19%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCC-ceEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLEL   50 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G-~~~~~~~v   50 (152)
                      .+|..+..   +++|.|.+|+.+|+|.|+|.+.|.-+ ..++.+.|
T Consensus        62 ~gR~~l~~---ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L  104 (107)
T d1l6za1          62 SGREIIYS---NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRF  104 (107)
T ss_dssp             CSSEEECT---TSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEE
T ss_pred             eeEEEEcc---cccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEE
Confidence            35787753   35899999999999999999988754 44444544

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=4.7e-05  Score=48.88  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=26.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      +|+.+..  ..+..+|.|.+++.+|+|.|.|.+.|.-+
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          68 ERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             TCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC---
T ss_pred             eEEEEEEECCCCEEEEEECCCChHHCEEEEEEEEECCC
Confidence            4666642  23456899999999999999999998543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=8.6e-05  Score=46.94  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      .|..+...+ +.+|.|.+++.+|+|.|.|.+.+.-+
T Consensus        55 ~r~~~~~~g-~~sL~I~~v~~~D~G~Y~C~V~~~~~   89 (105)
T d1dr9a1          55 NRTIFDITN-NLSIVILALRPSDEGTYECVVLKYEK   89 (105)
T ss_dssp             TTEEEESTT-TTEEEECSCCGGGCEEEEEEEEECCT
T ss_pred             eeeeeccCC-cEEEEECcCChHHCeEEEEEEEeCCC
Confidence            455555443 56899999999999999998876543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=5.3e-05  Score=48.32  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=24.9

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcCCCceEEEE
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYL   48 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~   48 (152)
                      .+.|.|.....+|.|+|+|+|+|.+|.....+
T Consensus        62 ~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~   93 (106)
T d1zxqa1          62 TATFNSTADREDGHRNFSCLAVLDLMSRGGNI   93 (106)
T ss_dssp             EEEEEEECCGGGGGCEEEEEEEEECGGGTCCE
T ss_pred             eEEEEEeeehhcCCcEEEEEEEecCCCCCCee
Confidence            35677877788888899999999998654433

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=4.1e-05  Score=47.91  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=21.4

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEcC
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      ..+|.|.+++.+|+|.|.|.+.|.
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~~   89 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVEDQ   89 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE
T ss_pred             EEEEEECCCChHHCEEEEEEEecC
Confidence            457999999999999999999774

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00025  Score=45.35  Aligned_cols=45  Identities=16%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEEEEEe
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~~~v~   51 (152)
                      +|+.+.  ......+|+|.+++.+|+|.|.|.+...-......+.|+
T Consensus        61 ~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~  107 (116)
T d1xeda_          61 GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLE  107 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEE
T ss_pred             CCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEE
Confidence            455553  344567899999999999999998765433333334443

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.03  E-value=0.0003  Score=45.16  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=27.0

Q ss_pred             EEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        10 ~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      .+...+....|.|.+++.+|+|.|-|.+....+.
T Consensus        66 ~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~   99 (114)
T d2ak4d1          66 NFQKSTSSFNFTITASQVVDSAVYFCALSGFYNT   99 (114)
T ss_dssp             EEETTTTEEEEEESSCCGGGCEEEEEEEECSBTT
T ss_pred             EEcCCCCEEEEeecccccccCCCceEeCCCCCCC
Confidence            3344566788999999999999999988776543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.01  E-value=0.00033  Score=44.70  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....++..+|+|.+++.+|+|.|-|.+.+
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          59 PSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            4688887677788999999999999999997654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00049  Score=44.21  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .+|+.+...++...|+|.+++.+|+|.|-|.+.
T Consensus        65 ~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~   97 (114)
T d1akjd_          65 TQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL   97 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CcEEEEECCCCChhcEEccCCCCCCEEEeEeEc
Confidence            467888777778899999999999999999876

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.95  E-value=0.00053  Score=44.20  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (152)
                      +||.+..  .....+|+|.+++.+|+|.|-|......+..
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~  102 (116)
T d1tvda_          63 GRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTD  102 (116)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTTTC
T ss_pred             eEEEEEecCceeEEeeeecCccccccccceeeEecCCCCc
Confidence            6887754  3344679999999999999999877654443

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00046  Score=43.56  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=22.5

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      ....+|.|.+|+.+|+|.|.|.....-
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          66 SDSWTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             CCeEEEEECCCChhHCEEEEEEEEecC
Confidence            345689999999999999999986543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00027  Score=44.56  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=28.0

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+..  ..+..+|.|.+|+.+|+|.|.|+++..
T Consensus        65 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CCCeEEEEeCcCCEEEEEECCCChhHCEEEEEEEEeC
Confidence            46777753  345778999999999999999999754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.81  E-value=0.00059  Score=43.42  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+....++....|+|.+++.+|+|.|-|.+.+
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcceecccCCEEEEEEcccCcCCCEEEEEEcCC
Confidence            4688888788889999999999999999997654

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0008  Score=44.93  Aligned_cols=77  Identities=5%  Similarity=0.056  Sum_probs=33.3

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecC--CCCcceEEEEEEECCCCCCCc-----ceEEecCCCeEEEEEEEEcCCCCCC
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPSP-----MSNQLTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~--~~pi~~y~~~~r~~~~~~~~~-----~~~~L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      .|.||..... ...+..++.|+|..+.  +.++..|.|+|+.........     ....+...+.|.++|.|.|..|.+.
T Consensus         2 ~Ps~P~~~~~-~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~~~~   80 (196)
T d2dtge2           2 NPSVPLDPIS-VSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQ   80 (196)
T ss_dssp             CCCCCEEEEE-EECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSCTTCSSSCSCCCCCC-----------------
T ss_pred             cCcCCcCCEE-EeccCCEEEEEEECCCCCCCcEEEEEEEEEcCCCCCceeEEeeEEeccccceeEEEEEEEEEcCCcccc
Confidence            3555543321 1235789999999753  357899999998875543221     1224555889999999999999887


Q ss_pred             CCCCc
Q psy15979        126 STNGG  130 (152)
Q Consensus       126 ~s~~~  130 (152)
                      ++...
T Consensus        81 ~~~~~   85 (196)
T d2dtge2          81 SEYED   85 (196)
T ss_dssp             -----
T ss_pred             CcCCc
Confidence            66543

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.68  E-value=0.0013  Score=42.00  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      .+++.....++...|.|.+++.+|+|.|-|.+.+..
T Consensus        61 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          61 SDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             cccEEEECCCCEeeEEeCcCccccCEEEEEeeecCC
Confidence            467777767788999999999999999999876543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0014  Score=41.24  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=27.8

Q ss_pred             CCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         6 ~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      .+|+.+..  ..+..+|.|.+++.+|+|.|.|.....-
T Consensus        56 ~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~~   93 (108)
T d1hkfa_          56 TSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPS   93 (108)
T ss_dssp             STTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred             eeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecCC
Confidence            35666643  4567789999999999999999877543

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.64  E-value=0.00085  Score=42.77  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=26.5

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .++.+...+....|.|.+++.+|+|.|.|.+.-
T Consensus        58 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (110)
T d2esvd1          58 ASLIITEDRKSSTLILPHATLRDTAVYYCIVVR   90 (110)
T ss_dssp             CEEEECTTCSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ceeeecccCCeeeehhcccccCCceEEEEEEeC
Confidence            345555566788899999999999999998754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0004  Score=44.68  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=26.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+..  .....+|.|.+|+.+|+|.|.|..+.
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          70 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEe
Confidence            5777753  23567899999999999999998874

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.0016  Score=41.65  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             CCCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          5 TTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         5 ~~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .++|+.+..  ++....|.|.+++.+|+|.|.|.+...
T Consensus        58 ~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          58 QDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             SCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             ccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeC
Confidence            357888764  334577999999999999999987643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.62  E-value=0.00093  Score=42.42  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....+...+|+|.+++.+|+|.|-|.+.+
T Consensus        58 ~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          58 PSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             CcceEeecCCCEeeeEehhhcccCCEeEEEEEeC
Confidence            3678887777888999999999999999997654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.0013  Score=41.69  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=28.2

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .+|+.....+....|.|.+++.+|+|.|-|.+.
T Consensus        58 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          58 PARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            367888777788899999999999999999554

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.57  E-value=0.0043  Score=39.80  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .+|+.+...+....|.|.+++.+|+|.|-|.+.
T Consensus        60 ~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~   92 (114)
T d2rhea_          60 SDRFSASKSGTSASLAISGLESEDEADYYCAAW   92 (114)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcceecCCCCeeeeEecccCcccCceEEEeec
Confidence            367777766778899999999999999999876

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.55  E-value=0.0012  Score=41.81  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.....+....|.|.+++.+|+|.|-|.+..
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          59 SRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             CceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            678887777888999999999999999997653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.55  E-value=0.0011  Score=42.34  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....++...|.|.+++.+|+|.|-|.+..
T Consensus        60 ~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          60 PDRFSGSKSGTSATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             ccceeeeCCCCEeeeEEeeeccccCcceEEeecC
Confidence            3678777777889999999999999999997753

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.54  E-value=0.0008  Score=42.84  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.+...+....|.|.+++.+|+|.|-|.+..
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          59 PSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             CTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             ccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            4688887777888999999999999999997653

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.53  E-value=0.0014  Score=41.64  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=29.0

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....++...|+|.+++.+|+|.|-|.+..
T Consensus        61 ~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          61 PSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            4678887777888999999999999999997643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.53  E-value=0.0014  Score=41.42  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=28.6

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .+|+.+........|+|.+++.+|+|.|-|.+.
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          59 PDRFTGSGSATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cceEEeeccCCeeecEEHhheecCCceEEEEec
Confidence            467887777788999999999999999999764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.51  E-value=0.0012  Score=41.89  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .+|+.....+....|.|.+++.+|+|.|-|.+.
T Consensus        60 ~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          60 ADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ccceeeecCCCEEEEEehHheecccEEEeeecC
Confidence            467887777778899999999999999999764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.50  E-value=0.0014  Score=41.58  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.....+....|.|.+++.+|+|.|-|.+..
T Consensus        60 ~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          60 SRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CceeecccCCEEEccccccCCcCCEEEEeeecc
Confidence            678887777888999999999999999996543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0015  Score=41.51  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=25.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+..  ..+..+|+|.+++.+|+|.|.|...
T Consensus        63 ~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~   96 (113)
T d1smoa_          63 GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIY   96 (113)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CeEEEEEECCCCEEEEEEccCCcccCceEEEEEE
Confidence            5787753  3455679999999999999999754

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.48  E-value=0.0011  Score=42.26  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....++...|.|.+++.+|+|.|-|.+.+
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          59 PKRFSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            4567666666788999999999999999997654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.46  E-value=0.0013  Score=42.06  Aligned_cols=34  Identities=32%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ..|+....++....|.|.+++.+|+|.|-|.+.+
T Consensus        63 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTN   96 (111)
T ss_dssp             CTTEEEECSSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcEEEecCCCEEEEEEcccccccCccEEEeecC
Confidence            3577777777889999999999999999997654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.0017  Score=41.59  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.+...+....|.|.+++.+|+|.|-|.+..
T Consensus        61 ~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          61 PARFSGSLIGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             ceeeeecccccceeeecCCCCccccEeEEEEccc
Confidence            3688877777889999999999999999998653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.44  E-value=0.0016  Score=41.52  Aligned_cols=32  Identities=28%  Similarity=0.569  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.....+....|.|.+++.+|+|.|-|.+.
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          60 SRFSGSGSGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEeccCCEEEEEEccccccCCeeEEEeee
Confidence            57777767788899999999999999999765

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0018  Score=42.02  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=25.1

Q ss_pred             CcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .|+... ..+...+|+|.+++.+|+|.|.|.+.
T Consensus        70 ~~~s~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          70 KLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             GTEEEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cEEEEECCCCCEeEEEEcccccCCCEEEEeeEe
Confidence            456554 34556789999999999999999764

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.40  E-value=0.0014  Score=41.60  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .+|+.....++...|.|.+++++|+|.|-|.+.
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          59 PDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCCeeecCCCCeeeeeechhheecceeEEEeEC
Confidence            367888777788999999999999999999654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.40  E-value=0.0016  Score=40.14  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=27.0

Q ss_pred             CCcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+...  ..++..+|.|.+++.+|+|.|.|.+..
T Consensus        43 ~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          43 DGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            3567664  345567899999999999999998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.38  E-value=0.002  Score=41.27  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .+|+....++....|.|.+++.+|+|.|-|.+.
T Consensus        65 ~~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          65 PDRFTGSGSGTDFTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CccEEEeCCCCeEeEEecccccCCCeEEEeccc
Confidence            467888777788899999999999999999654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.36  E-value=0.0013  Score=42.08  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      +|+.+.  ......+|+|.+++.+|+|.|.|.+.+.
T Consensus        59 ~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          59 GRYTATLDADTKQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             TTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             CccceeecCcccccccEEcccChhhCcccceeeecC
Confidence            566654  3446778999999999999999999874

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.34  E-value=0.0024  Score=40.03  Aligned_cols=34  Identities=35%  Similarity=0.445  Sum_probs=28.7

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ..|+..........|.|.+++.+|+|.|-|.+..
T Consensus        56 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          56 PQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCcEEECCCCCccCceEcCcchhHCceEEeeecC
Confidence            3567777677789999999999999999997654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.27  E-value=0.0023  Score=40.20  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +++.....+....|.|.+++.+|+|.|-|.+.
T Consensus        58 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          58 VRFSGSGSGTSYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ceEEEecCCCEEEEEecccCcccCCeEEEEec
Confidence            56666666778899999999999999999653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.25  E-value=0.0026  Score=40.63  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....+....|+|.+++.+|+|.|-|.+..
T Consensus        63 ~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          63 PARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcEEEecCCCchhcccccccccCCceEEEEECC
Confidence            3688887777888999999999999999996543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.17  E-value=0.0038  Score=39.67  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=27.4

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +++.....+....|+|.+++.+|+|.|-|.+.+
T Consensus        60 ~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          60 SRFSGSGSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             TTEEEEESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             ccccccCCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            456666677788999999999999999996554

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.15  E-value=0.0025  Score=40.37  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+....++....|+|.+++.+|+|.|-|.+.+
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          59 PSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CcceEEeccCCEEEEEeccceeCcCceEEEEECc
Confidence            3577777677888999999999999999996543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.13  E-value=0.0032  Score=40.29  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....+....|+|.+++.+|+|.|-|.+.+
T Consensus        65 ~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          65 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CTTEEEEECSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCeeeeccCCcccCccCCCCcccCEEEEEEECC
Confidence            3677777677888999999999999999995443

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.12  E-value=0.0022  Score=40.86  Aligned_cols=29  Identities=38%  Similarity=0.554  Sum_probs=23.8

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ..+...|.|.+++.+|+|.|-|.+....|
T Consensus        67 ~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          67 RARYSTLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             SSSEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             CCceeEEEECCCCHhHCEEEEEEecCCCC
Confidence            34566899999999999999998876443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.09  E-value=0.0028  Score=40.29  Aligned_cols=32  Identities=31%  Similarity=0.369  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+...+....|.|.+++.+|+|.|-|.+.
T Consensus        58 ~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   89 (108)
T d1nfde1          58 ERFSGSTSGTTATLTISGAQPEDEAAYYCLSS   89 (108)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGCSEEEEEEE
T ss_pred             ceeeecCCCCEeeeeEcCccccCCceEEEEee
Confidence            68888777778899999999999999999765

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.09  E-value=0.0017  Score=41.60  Aligned_cols=35  Identities=17%  Similarity=0.071  Sum_probs=26.0

Q ss_pred             CCcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.+.  .......|.|.+++.+|+|.|.|.+...
T Consensus        59 ~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          59 HQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             CSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             eeeeeeeccCCCCeEEeeccccccccCccceEEEEcC
Confidence            3455553  2334567999999999999999987654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.09  E-value=0.0041  Score=39.35  Aligned_cols=33  Identities=12%  Similarity=0.246  Sum_probs=25.9

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+...........|+|.+++.+|+|.|.|.+..
T Consensus        63 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          63 GYEASRPSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             TCEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEEeccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            334444556788999999999999999997653

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0038  Score=38.63  Aligned_cols=27  Identities=19%  Similarity=0.194  Sum_probs=22.6

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ....+.|.+|+..|+|.|.|...+..+
T Consensus        55 ~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          55 NKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            345799999999999999999887543

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.09  E-value=0.0015  Score=41.42  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.....++..+|.|.+++.+|+|.|-|.+.
T Consensus        60 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          60 SRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             TTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             CCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            56666666778899999999999999999654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.02  E-value=0.0011  Score=42.42  Aligned_cols=30  Identities=23%  Similarity=0.217  Sum_probs=23.9

Q ss_pred             EEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         10 IMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        10 ~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+...++...|.|.+++.+|+|.|.|.+..
T Consensus        65 ~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          65 EFSKSNSSFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             ECBTTTTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEeCcCCEEEEecccccccccceecccccC
Confidence            333455667899999999999999997763

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0043  Score=38.43  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      ..+.|.+|+.+|+|.|.|...|..+-
T Consensus        62 a~F~l~~vt~~~~G~Y~C~y~~~~~~   87 (99)
T d1ucta1          62 PEFVIDHMDANKAGRYQCQYRIGHYR   87 (99)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             EEEEecCCCHHHCceEEEEEECCCcc
Confidence            45899999999999999999987653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.91  E-value=0.0043  Score=39.61  Aligned_cols=32  Identities=34%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.....++...|.|.+++.+|+|.|-|...
T Consensus        65 ~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          65 DRFTGSGSGTDFTLKISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             ceEEeeCCCCEEEEEECccccCcCEeEEEEcC
Confidence            57777666778899999999999999999543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.91  E-value=0.0042  Score=39.60  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=27.3

Q ss_pred             cCCCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          4 ETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         4 ~~~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ..++|+.+.-  ......|+|.+++.+|+|.|.|.+..
T Consensus        50 ~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          50 SIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            3456776642  34456899999999999999998864

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.90  E-value=0.0059  Score=38.81  Aligned_cols=35  Identities=31%  Similarity=0.419  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .+|+.....+....|.|.+++.+|+|.|-|.+...
T Consensus        58 ~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          58 PERFSGSNSGNMATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             eeeEeeecCCCccceEEeeeccCCCEEEEEEecCC
Confidence            36777777778889999999999999999987643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.88  E-value=0.0039  Score=39.85  Aligned_cols=37  Identities=19%  Similarity=0.298  Sum_probs=27.5

Q ss_pred             cCCCcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          4 ETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         4 ~~~~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      ..+.|+...-  ..+...|+|.+++.+|+|.|.|.+.-.
T Consensus        49 ~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          49 SKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             ccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            3456776642  335668999999999999999976643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.84  E-value=0.0046  Score=39.23  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             EcCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         13 TRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      .......|.|.+++.+|+|.|.|.+.-..|
T Consensus        67 ~~~~~~~L~i~~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          67 KSSGRSTLYIAASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             TTTTEEEEEESSCCGGGCEEEEEEEEESSS
T ss_pred             cCCCEEEeeeecCCCCCCcEEeEeEecCCC
Confidence            355677999999999999999998875443

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0039  Score=39.88  Aligned_cols=33  Identities=9%  Similarity=0.113  Sum_probs=25.5

Q ss_pred             CcEEE--EEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i--~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+  ...++..+|.|.+++.+|+|.|.|.++.
T Consensus        64 ~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          64 TGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             SSCEEEEEECSSEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CcEEEEEECCCCeEEEEECCCCcccCeEEEEEEec
Confidence            44444  3445667899999999999999998764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.81  E-value=0.0039  Score=39.65  Aligned_cols=32  Identities=28%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+.  .......|+|.+++.+|+|.|.|.+.
T Consensus        66 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          66 KRNIILESSDSRRPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             TCCEEEESTTSSSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEeecccCCCCCcEEEEeEc
Confidence            454443  34456789999999999999999764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.78  E-value=0.0046  Score=39.24  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=26.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      +|+.+..  ......|.|.+++.+|+|.|-|.+.-..
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          60 GHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDY   96 (115)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECCC
T ss_pred             CceEEEEeccCCEEEEEECCCCccccccccceeecCC
Confidence            4565543  4456789999999999999999876443

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.76  E-value=0.004  Score=39.46  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=25.0

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.... ......|+|.+++.+|+|.|.|.+.
T Consensus        61 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          61 DRFFAERPEGSVSTLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             TTEEEECTTSSCEEEEESSCCGGGCEEEEEEEE
T ss_pred             CceeeECCcCCEEEEEECCCCcCCCEEEEEeee
Confidence            5665543 3356789999999999999999764

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.75  E-value=0.005  Score=39.20  Aligned_cols=31  Identities=35%  Similarity=0.479  Sum_probs=27.1

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEE
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCE   36 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~   36 (152)
                      .+|+.....+....|.|.+++.+|+|.|-|.
T Consensus        64 ~~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa   94 (112)
T d1mjul1          64 PDRFSGSGSGTAFTLRISRVEAEDVGVYYCL   94 (112)
T ss_dssp             CTTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCcEEeecCCCEEEEEECCccccCCceEEEE
Confidence            3577777777888999999999999999994

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.73  E-value=0.0027  Score=40.00  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=22.4

Q ss_pred             EcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979         13 TRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      ..+....|.|.+++.+|+|.|-|.+.
T Consensus        66 ~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          66 KREKKLSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             TGGGEEEEEESSCCTTSCSEEEECCE
T ss_pred             CCCCeeEeEeccCCCCCceeEeeeec
Confidence            34567789999999999999999765

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.0046  Score=39.97  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.....+....|.|.+++.+|+|.|-|.+.+
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          59 PSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             CTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             eeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            3567666666778999999999999999997654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.70  E-value=0.0043  Score=39.69  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=27.3

Q ss_pred             CcEEE--EEcCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          7 ERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         7 ~r~~i--~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      +++.+  ........|+|.+++.+|+|.|.|.+....+
T Consensus        58 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (115)
T d1ogad1          58 KRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQG   95 (115)
T ss_dssp             TTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             cccccccccccceeeeeecCCCccceeeEcccccCCCC
Confidence            44444  3456788999999999999999998774433

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0084  Score=38.12  Aligned_cols=29  Identities=31%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             EEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         11 METRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .........|.|.+++.+|+|.|.|.++.
T Consensus        68 ~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          68 GTFNESRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EeCCCCEEEEEhhcCccccCEeEEEEEec
Confidence            34455678899999999999999997763

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.56  E-value=0.0097  Score=38.03  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=27.1

Q ss_pred             CCcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .+|+.+.. .+....|.|.+++.+|+|.|-|.+.-
T Consensus        64 ~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          64 KDKFLINHASPTLSTLTVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             TTTEEEEECSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cccceeeccccccccccccccccccCceEEEEEec
Confidence            46777764 34567899999999999999998764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.56  E-value=0.011  Score=37.14  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+...  ..+...+|.|.+++.+|+|.|-|.+.
T Consensus        59 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (111)
T d1bd2d1          59 GRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAM   92 (111)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CcceEEEEccCCEEEEEECCCcccccEEEEeecc
Confidence            455543  34578899999999999999999776

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.016  Score=35.84  Aligned_cols=78  Identities=9%  Similarity=0.112  Sum_probs=41.6

Q ss_pred             CCCCceeecCCCCCCCCeEEEEEEecCCCCcceEEEEEE--ECCCCC---------------CCcceEEecC-----CCe
Q psy15979         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYR--KIPGNE---------------PSPMSNQLTG-----TNQ  110 (152)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~W~~~~~~pi~~y~~~~r--~~~~~~---------------~~~~~~~L~~-----~~~  110 (152)
                      +|.+|.+...........+.|.|.+....|...+.|...  ......               .....+.|..     .+.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            455554443322223678999998754344445555321  110100               0011233333     789


Q ss_pred             EEEEEEEEcCCCCCCCCCCccc
Q psy15979        111 YQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus       111 Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      |.|  .|.|.+|....+....+
T Consensus        82 Y~C--~a~N~~G~~~~s~~v~l  101 (110)
T d1f97a2          82 YYC--QAQNGYGTAMRSEAAHM  101 (110)
T ss_dssp             EEE--EEECSSSCCEECCCEEE
T ss_pred             EEE--EEEECCCcEEEEEEEEE
Confidence            988  77999998877665544

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.52  E-value=0.0026  Score=40.62  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=25.2

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      +|+....  ......|+|.+++.+|+|.|-|.+...
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          60 NGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred             CCCEEEECCCCCEEEEeeccccccCCccceeeecCC
Confidence            3444432  233457999999999999999998764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.50  E-value=0.0069  Score=38.25  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=26.1

Q ss_pred             CCcEEEEEc-CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         6 ~~r~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ++|+..... +....|+|.+++.+|+|.|.|.+..
T Consensus        60 ~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          60 NNRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             STTEEEECTTSSSEEEEESSCCGGGCEEEEEEEES
T ss_pred             CccEEEEcCCCCEEEEEECCcccCCCceEEEeeeC
Confidence            456766543 3456899999999999999997653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.50  E-value=0.0072  Score=38.23  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=25.6

Q ss_pred             CcEEEEE-cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.... ......|+|.+++.+|+|.|-|.+..
T Consensus        60 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          60 GRFSGRQFSNSRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             cceeeccCcCCeeEEEECCCCcccceeeeeeeeC
Confidence            4554443 44567899999999999999998764

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.012  Score=37.42  Aligned_cols=33  Identities=12%  Similarity=0.254  Sum_probs=26.4

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+..  ..+.-+|+|.+++.+|+|.|-|....
T Consensus        59 gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~   93 (110)
T d1u9ka_          59 GKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYH   93 (110)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cEEEEEEECCCCEEEEEECccccCCCEEEEEEEeC
Confidence            5788864  34567799999999999999997654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.14  E-value=0.0072  Score=38.25  Aligned_cols=32  Identities=13%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             cEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          8 RRIME-TRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         8 r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ++... .......|.|.+++.+|+|.|-|.+..
T Consensus        62 ~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          62 GYSVSREKKERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             TEEEECSSTTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             cceEEeccCcEeeeEeccCccCCcccEEeeEcc
Confidence            34433 345567899999999999999998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.12  E-value=0.016  Score=37.46  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=26.7

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +||.+.-  ..+...|.|.+++.+|+|.|-|.+..
T Consensus        67 ~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          67 GKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             TSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceeEEeeeccccceeecccccccccCcEEEEeeeC
Confidence            5888764  34567899999999999999997643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.11  E-value=0.01  Score=37.41  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=26.8

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+.-  .++...|.|.+++.+|+|.|-|.+.+
T Consensus        61 ~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          61 DRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYD   95 (111)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CceeEeecCCCCccccccccCCcccCcEEEEeecc
Confidence            5666643  45678999999999999999997654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.02  E-value=0.0091  Score=38.47  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=25.7

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+..  ..+...|+|.+++.+|+|.|-|.+.
T Consensus        66 ~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          66 KKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             SEEEEEECCTTTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             cccccccccccccccccccccccccceeEEEEEc
Confidence            5677753  3456789999999999999999654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.97  E-value=0.011  Score=37.20  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=25.7

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+...  ..+....|.|.+++.+|+|.|-|.+..
T Consensus        59 ~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          59 RGFEATYNKEATSFHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             TTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred             CceeeeecCCCCEEeeeecCcCcCCCcccceeecC
Confidence            456554  234567899999999999999998764

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.019  Score=35.77  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=34.6

Q ss_pred             cCCCcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979          4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus         4 ~~~~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      .+.+.|.|..+   ++|.|.++..+|+|.|...+=|.-|.....
T Consensus        52 ~~~~~y~i~~n---GtLkIK~L~~~d~GtYkv~vYd~~Gk~vle   92 (101)
T d1hnfa1          52 KEKDTYKLFKN---GTLKIKHLKTDDQDIYKVSIYDTKGKNVLE   92 (101)
T ss_dssp             ESCTTEEECTT---SCEEECSCCGGGCEEEEEEEEETTSCEEEE
T ss_pred             CCCceEEEccC---CcEEeeeeeecCCCcEEEEEEcCCCcEeee
Confidence            45667888644   589999999999999999999999987763

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.93  E-value=0.0057  Score=38.75  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=25.6

Q ss_pred             cEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         8 r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      |+.+..+.....|.|.+++.+|+|.|-|.+.-
T Consensus        59 ~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          59 SLAIAEDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             EEEECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             ceeecccCCeeEEEEeecccccceeEeeeEec
Confidence            45555556677899999999999999997653

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.93  E-value=0.0097  Score=37.69  Aligned_cols=25  Identities=12%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .....|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~~~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          69 KESFPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             TTBCCEEECSCCSCCCEEEEEEEES
T ss_pred             CCeEEEEECcCCcCCceeEEEeecc
Confidence            4456799999999999999996653

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.71  E-value=0.0069  Score=38.32  Aligned_cols=27  Identities=15%  Similarity=0.254  Sum_probs=22.4

Q ss_pred             EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         13 TRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .......|.|.+++++|+|.|-|.+..
T Consensus        67 ~~~~~~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          67 STTEDFPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             SSSSBCCEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEeecC
Confidence            344566899999999999999997763

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.012  Score=37.46  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=23.2

Q ss_pred             EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         13 TRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ..+....|.|.+++.+|+|.|-|.++.
T Consensus        70 ~~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          70 SSGNQVNLTIQGLRAMDTGLYICKVEL   96 (118)
T ss_dssp             BCSSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEeeccccCCCEEEEEeEec
Confidence            345677899999999999999998774

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.56  E-value=0.0031  Score=39.15  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=27.5

Q ss_pred             CcEEEE--EcCCEeEEEEceeCCCCCEEEEEEEEcCCCc
Q psy15979          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (152)
Q Consensus         7 ~r~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (152)
                      .|+.+.  ...+...|.|.+++.+|+|.|-|.+....|.
T Consensus        51 ~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~~g~   89 (96)
T d1ymmd1          51 GRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGT   89 (96)
T ss_dssp             SSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred             ccceeeccCcceecccCcCCCCcccCEEEeEeEecCCCC
Confidence            455543  2334567999999999999999988766554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.036  Score=33.69  Aligned_cols=25  Identities=16%  Similarity=0.264  Sum_probs=18.5

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      .+.+.|.|  .|.|.+|....++...+
T Consensus        76 ~D~G~Y~C--~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          76 SDTGEYSC--EARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             GGCCCEEE--EEECSSSCCEECCCBCC
T ss_pred             ccCcEEEE--EEEECCCceEEEEEEEE
Confidence            34789988  77999998876655443

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.32  E-value=0.024  Score=36.29  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=26.4

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+..  ..+...|.|.+++.+|+|.|.|....
T Consensus        62 ~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          62 DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccceeeccccccceecccccccccCCceeecCccc
Confidence            5776653  44678999999999999999997654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.057  Score=32.57  Aligned_cols=56  Identities=9%  Similarity=0.121  Sum_probs=32.5

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC------CC----------cceEE-----ec-CCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PS----------PMSNQ-----LT-GTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~----------~~~~~-----L~-~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..+.+.|.|.+.+.++...+.| |+......      ..          ...+.     +. +.+.|.|  .|.|.+|..
T Consensus        16 ~G~~v~l~C~v~g~P~p~~i~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C--~A~N~~G~~   92 (101)
T d3b5ha1          16 EGETAMLVCKSESVPPVTDWAW-YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRC--NGTSSKGSD   92 (101)
T ss_dssp             TTSCEEEEEECCCSSCCCEEEE-EECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEE--EEEETTEEE
T ss_pred             cCCeEEEEEEEEecCCeeEEEE-EeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEE--EEEECCCEE
Confidence            4678899999887765555555 33221111      00          01122     22 3788988  789999965


Q ss_pred             C
Q psy15979        125 N  125 (152)
Q Consensus       125 ~  125 (152)
                      .
T Consensus        93 ~   93 (101)
T d3b5ha1          93 Q   93 (101)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.04  Score=33.67  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      ......+.|.+|+.+|+|+|+|...
T Consensus        50 ~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          50 GKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCceeEEEecccChhcCceEEEEeE
Confidence            3456789999999999999999643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.77  E-value=0.018  Score=36.18  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=23.3

Q ss_pred             cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979         14 RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      ......|.|.+++.+|+|.|-|.+.-..|
T Consensus        67 ~~~~~~L~i~~~~~~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          67 RTEHFPLTLESARPSHTSQYLCASSENIG   95 (112)
T ss_dssp             SSSBCCEEBSSCCTTTCSEEEEEEECSSS
T ss_pred             CCCceEeeeccccccccccEEEEEecCCC
Confidence            34456799999999999999998775443

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.76  E-value=0.05  Score=34.11  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=24.0

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      +|+.|..  ..+.-.|.|.+++.+|++.|-|......|
T Consensus        53 ~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~~~~~   90 (103)
T d1oari_          53 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARMWYYG   90 (103)
T ss_dssp             TTEEEEC----CEEEEEECCC---CCSEEEEEEEECSS
T ss_pred             eceEEeccccccEEEeeeeeccccccEEEEeEEECCCC
Confidence            6788863  24455799999999999999997655444

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.044  Score=32.57  Aligned_cols=55  Identities=11%  Similarity=0.108  Sum_probs=32.4

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEEC---CCCCCCc---ceEEecCCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKI---PGNEPSP---MSNQLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~---~~~~~~~---~~~~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ...++.|.|.+.+.+....|.| |+..   .......   ....+++.+.|.|  .|.|.+|..
T Consensus        15 ~G~~~~l~C~~~g~P~P~~i~W-~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C--~A~N~~G~~   75 (85)
T d1rhfa2          15 PNAPFQLSCEAVGPPEPVTIVW-WRGTTKIGGPAPSPSVLNVTGVTQSTMFSC--EAHNLKGLA   75 (85)
T ss_dssp             TTCCEEEEEEEECSSSCCEEEE-EETTEECSCSEESSEEEEECCCSSCEEEEE--EEEETTEEE
T ss_pred             CCCEEEEEEEEecCCcceEEEE-EECCEECCCCCCcceEEecCCccccEEEEE--EEEcCCCcE
Confidence            3578899999877643234555 3321   1110111   1224566899988  889999964

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.40  E-value=0.09  Score=32.05  Aligned_cols=59  Identities=15%  Similarity=0.176  Sum_probs=37.7

Q ss_pred             CeEEEEEEecCCCCc-ceEEEEEEECCCCC--------CC-cce--EEecC---CCeEEEEEEEEcCCCCCCCC
Q psy15979         69 NSYNITWMVSSYTPL-EEFKIKYRKIPGNE--------PS-PMS--NQLTG---TNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus        69 ~~~~L~W~~~~~~pi-~~y~~~~r~~~~~~--------~~-~~~--~~L~~---~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ..+.-+|.+....++ +.|.+.|+......        .. ..+  +...+   ...|.|.|.|.|..|...+.
T Consensus        14 ~~~~C~W~~G~~t~L~T~Y~l~~~~~~~~~~~eCp~y~~~~~~~C~f~~~~~~~~~~y~i~V~a~N~LG~~~Sd   87 (96)
T d1f6fb1          14 ETFTCWWNPGTDGGLPTNYSLTYSKEGEKTTYECPDYKTSGPNSCFFSKQYTSIWKIYIITVNATNQMGSSSSD   87 (96)
T ss_dssp             SCEEEEEECCCCTTSCCEEEEEEEETTEEEEEECSCSSTTCTTEEEECTTTCCSSCEEEEEEEEEETTEEEECC
T ss_pred             CEEEEEeeCCCcCCcCceEEEEEEecCCCccccCCcccCCCceeEEECCccCccceEEEEEEEEEcCCCCcccc
Confidence            457778887543333 67999987653221        11 112  23232   68999999999999977554

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.038  Score=34.04  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             EeEEEEceeCCCCCEEEEEEEEc
Q psy15979         17 RHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ...+.|.+|+.+|+|+|+|.-.-
T Consensus        59 ~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2          59 RAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             EEEEEECCCCTTSCEEEEEEEEC
T ss_pred             EEEEEeeecccCCCeEEEEeeEc
Confidence            34689999999999999997754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.36  E-value=0.033  Score=35.90  Aligned_cols=31  Identities=16%  Similarity=0.280  Sum_probs=24.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.+.-  ..+.-.|.|.+++.+|++.|-|..
T Consensus        66 gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~   98 (119)
T d1qnzh_          66 GKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAI   98 (119)
T ss_dssp             TTEEEEEETTTTEEEEEEEEECGGGCEEEEEEE
T ss_pred             ccceeecccccceeeeeecccCccceeEEEEEE
Confidence            5888864  334556999999999999999943

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.32  E-value=0.044  Score=35.29  Aligned_cols=33  Identities=12%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .|+.|..  ..+.-.|.|.+++.+|.+.|.| |...
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYC-Ar~~  100 (119)
T d1eapb1          66 VKATLTADQSSSTAYMQLNSLTSEDSAVYFC-KRSY  100 (119)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEE-EECC
T ss_pred             cceEEEcccCcceEEeeeecccCCcceEEEE-EEec
Confidence            4787863  3345679999999999999999 4443

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.31  E-value=0.052  Score=34.99  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+..  ..+.-.|.|.+++.+|++.|-|...
T Consensus        67 gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          67 SRLTITKDASKKQVVLTLTNLDPVDTATYYCART  100 (120)
T ss_dssp             SSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             cccceecccccceeeeeEEeeeeccceEEeeEec
Confidence            5888864  3345679999999999999999644

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=92.82  E-value=0.025  Score=35.66  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=24.8

Q ss_pred             CcEEEE-EcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+... ..+....|+|.+++.+|+|.|-|.+..
T Consensus        62 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          62 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             TTCCCEECTTSCEEEECCSCCGGGCEEECEEEES
T ss_pred             cceeeEcCCCCeEEEEecccCcCCceeEEEEeec
Confidence            455443 234456899999999999999997653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.068  Score=32.74  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=20.9

Q ss_pred             CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         15 GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +....+.|.+|+.+|+|+|.|....
T Consensus        53 ~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          53 EHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             SSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CcccEEEEeccccccCcEEEEEEEc
Confidence            3446789999999999999998764

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.61  E-value=0.1  Score=33.55  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|.-+  .+.-.|.|.+++.+|++.|-|...-
T Consensus        64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSL   98 (119)
T ss_dssp             TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cceEEecccCCcceecccccCCcCCcceEeeeecc
Confidence            58888643  3455799999999999999996543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=92.47  E-value=0.087  Score=33.79  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEcCCC
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (152)
                      .|+.|.-  ..+.-.|.|.+++.+|++.|-|......|
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYG  103 (118)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             eeEEEeecCccceeeccccccCCCcceEEEeeEecCCC
Confidence            5788864  33455699999999999999997665443

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=92.41  E-value=0.052  Score=35.27  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+.-+  .+.-.|.|.+++.+|++.|-|...
T Consensus        67 ~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          67 SRLTVSKDTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeEEecccCCcEEEcceecccccccceEEEEEe
Confidence            58888643  445679999999999999999753

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.035  Score=36.32  Aligned_cols=28  Identities=7%  Similarity=-0.035  Sum_probs=22.4

Q ss_pred             EecCCCeEEEEEEEEcCCCCCCC-CCCcc
Q psy15979        104 QLTGTNQYQNRRLVRKRFDRGNS-TNGGL  131 (152)
Q Consensus       104 ~L~~~~~Y~~rV~A~N~~G~g~~-s~~~~  131 (152)
                      .|.+++.|.|+|.|.|..|.|.+ +.+..
T Consensus       161 ~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~  189 (196)
T d2dtge2         161 GLRHFTGYRIELQACNQDTPEERCSVAAY  189 (196)
T ss_dssp             SSCSSCEEEECCEEESCSSSSCCBCCCCC
T ss_pred             CCCCCCEEEEEEEEEECCCCCCCccCcce
Confidence            36669999999999999999976 34443

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.35  E-value=0.049  Score=35.08  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=25.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..  ..+.-.|.|.+++.+|.+.|.|...
T Consensus        66 gRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          66 GRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            5888864  3455679999999999999999653

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.30  E-value=0.064  Score=34.85  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=25.2

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|.-+  .+.-.|.|.+++.+|++.|-|....
T Consensus        65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eeEEEEecCCceEEEEEEeccCcccCceeEEEeec
Confidence            58888643  3445599999999999999996543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.28  E-value=0.085  Score=34.00  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=25.7

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|-|...
T Consensus        66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeEEeccccceeEEeeeeecccccceEEEEEEe
Confidence            58888653  455679999999999999999654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.20  E-value=0.053  Score=34.82  Aligned_cols=33  Identities=12%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+..  ..+.-.|.|.+++.+|++.|.|....
T Consensus        66 gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          66 GSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             eeeeeecccccceEEEeecccCcCcceEEEEeEcC
Confidence            6788864  33455699999999999999997543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.15  E-value=0.072  Score=34.40  Aligned_cols=32  Identities=13%  Similarity=0.224  Sum_probs=25.4

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|.|...
T Consensus        67 gR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeEEeccCCcceeeecccccCCCcceEEEEeec
Confidence            68888643  345569999999999999999655

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=92.07  E-value=0.077  Score=33.59  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=25.7

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .|+.|..+  .+.-.|.|.+++.+|++.|-|.-.
T Consensus        68 gR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          68 DRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceeccccccceeEecccCCCHhHCEEEEEEEc
Confidence            48888753  455679999999999999999644

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.59  Score=27.22  Aligned_cols=54  Identities=9%  Similarity=0.074  Sum_probs=30.4

Q ss_pred             CCeEEEEEEecCCCCcceEEEEEEECCCCCC-------CcceEEec-----CCCeEEEEEEEEcCCCCCC
Q psy15979         68 PNSYNITWMVSSYTPLEEFKIKYRKIPGNEP-------SPMSNQLT-----GTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        68 ~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~-------~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~  125 (152)
                      .+.+.|.|.+.+.++ ..+.|. +.......       ....+.|.     +.+.|.|  .|.|.+|..+
T Consensus        16 G~~v~l~C~~~g~p~-p~i~W~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~N~~g~~~   81 (90)
T d1vcaa2          16 GDSVSLTCSTTGCES-PFFSWR-TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC--TATCESRKLE   81 (90)
T ss_dssp             TSCEEEEEEEESCSS-CEEEEE-ETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEE--EEEETTEEEE
T ss_pred             CCEEEEEEeccCCCC-ceEEEE-ecCccceeeeeeeecCCcEEEEecccccccceEEE--EEEeCCCEEE
Confidence            577888888876543 334442 22211111       11223333     3899998  7799998643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=91.93  E-value=0.13  Score=33.28  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=26.6

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .|+.|.-+  .+.-.|.|.+++.+|++.|-|.....
T Consensus        66 gR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr~~~  101 (126)
T d1dfbh1          66 GRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGRD  101 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             cceEEeccCCCcEEEeeeeeeccCcceEEEEEeccC
Confidence            57888643  45567999999999999999976543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.79  E-value=0.066  Score=34.21  Aligned_cols=30  Identities=13%  Similarity=0.275  Sum_probs=24.0

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCE   36 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~   36 (152)
                      +|+.+..  ..+.-.|.|.+++.+|++.|-|.
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCA   97 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCA   97 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEe
Confidence            5788864  23455699999999999999994

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.70  E-value=0.053  Score=34.67  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=24.7

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|-|..
T Consensus        66 gRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          66 GRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             eeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence            58888643  34456999999999999999953

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=91.64  E-value=0.094  Score=33.72  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=25.1

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..  ..+.-.|.|.+++.+|++.|-| |.
T Consensus        65 gRftiS~D~s~nt~~L~i~~l~~eDtA~YYC-Ar   97 (120)
T d1dn0b1          65 SRVTISVDTSKNQFSLKLSSVTAADTAVYYC-AR   97 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEE-EE
T ss_pred             eeeEEeccCchheecccccccccccccEEEE-Ee
Confidence            5888874  3445679999999999999999 54

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=91.62  E-value=0.12  Score=33.06  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=25.7

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+..  ..+.-.|.|.+++.+|++.|-|...
T Consensus        65 gR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~   98 (116)
T d7fabh1          65 GRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccchhhhhccccccccccceEEEeeee
Confidence            5788864  3456779999999999999999653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.089  Score=31.47  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=15.3

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      ++.+.|.|  .|.|..|....+
T Consensus        70 ~D~G~Y~C--~a~N~~G~~~s~   89 (96)
T d2c9aa1          70 RDAGKYRC--MIRTEGGVGISN   89 (96)
T ss_dssp             GGCSEEEE--EEEETTEEEEEE
T ss_pred             HHCeEEEE--EEEeCCCeEEEE
Confidence            33899998  779999976444

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.54  E-value=0.054  Score=35.50  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=25.3

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+.-  ..+.-.|.|.+++.+|++.|-|...
T Consensus        67 ~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          67 TRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceecccccccEEEcccccCCcccceEEEEEEe
Confidence            5888854  2345569999999999999999655

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.51  E-value=0.069  Score=34.31  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|-| |..
T Consensus        66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYC-Ar~   99 (118)
T d1nlbh1          66 GRFAFSLETSASTAYLQINSLKNEDTATYFC-ARF   99 (118)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEE-EEE
T ss_pred             eeeEEEecCCceeEEeeeeecccCcceEEEE-eee
Confidence            58888642  345569999999999999999 443

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=0.057  Score=33.05  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=18.9

Q ss_pred             eEEEEceeCCCCCEEEEEEEE
Q psy15979         18 HTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      ..+.|.+|+.+|+|.|.|...
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1          57 GQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             TEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEecCHHHCCeEEEEEe
Confidence            479999999999999999865

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.49  E-value=0.092  Score=34.09  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+.-  ..+.-.|.|.+++.+|++.|-|.+.-
T Consensus        71 gR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          71 GRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             cceeEeccCCceEEEEeeecccccceeEEEEEEEe
Confidence            4888863  34566799999999999999997653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.49  E-value=0.1  Score=33.74  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|.|....
T Consensus        65 gR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          65 GRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATR   99 (124)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cccEEecccccceeeceeccccCCcceEEEEeecc
Confidence            57888643  4556799999999999999997654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.48  E-value=0.068  Score=34.57  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=25.7

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|.-  ..+.-.|.|.+++.+|++.|-|....
T Consensus        66 gR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          66 GRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEEecCcccccccceeeeccCcccceeEEecC
Confidence            5788864  33455699999999999999996554

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.45  E-value=0.058  Score=34.63  Aligned_cols=32  Identities=13%  Similarity=0.308  Sum_probs=25.2

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|.-  ..+.-.|.|.+++.+|++.|-|...
T Consensus        65 gRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          65 GKATLTSDKSSNTAYLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             TCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEeccCceeEeecccccCCCcceEEEEeec
Confidence            6888864  3455579999999999999999643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.42  E-value=0.066  Score=34.53  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|-|..
T Consensus        66 gRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr   98 (121)
T d2p49b1          66 GRFTISRDKGKNTVYLQMDSLKPEDTATYYCAA   98 (121)
T ss_dssp             TTEEEECTTSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EeEEEeecCCceEEEEEeeeccccceeEEeeec
Confidence            58888743  34456999999999999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.38  E-value=0.087  Score=33.94  Aligned_cols=32  Identities=13%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..  ..+.-.|.|.+++.+|++.|-|...
T Consensus        66 gR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEEeecCCceeeecccccCcCcceEEEeEee
Confidence            4888864  3345679999999999999999654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.13  E-value=0.13  Score=33.37  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=26.6

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|.-+  .+.-.|.|.+++.+|.+.|-|....
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          66 GRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEeecCCCceEEeeeeeccccCceEEEEeEEe
Confidence            68888643  4566799999999999999997654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.10  E-value=0.14  Score=32.77  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=24.8

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|-|..
T Consensus        66 gRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          66 GKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeccCccceeeecccccCCCcceEEEEee
Confidence            58888643  34556999999999999999954

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.99  E-value=0.069  Score=34.25  Aligned_cols=31  Identities=16%  Similarity=0.276  Sum_probs=25.1

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      .|+.|.-  ..+.-.|.|.+++.+|.+.|.|..
T Consensus        66 gR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          66 DRFTISRDKSKNTLYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             TTEEEECCTTTTEEEEEECSCCGGGCEEEECCE
T ss_pred             eeEEEEeccccceEEeeeccccCCcceEEEEcc
Confidence            5888873  345667999999999999999954

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.46  Score=28.81  Aligned_cols=57  Identities=9%  Similarity=0.140  Sum_probs=31.6

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCC--------CCCCcceEEec-----CCCeEEEEEEEEcCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPG--------NEPSPMSNQLT-----GTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~--------~~~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~  125 (152)
                      .+..++|+|.+.+..|....+|.+.+.+.        .......+.|.     +++.|.|  .|.|.+|...
T Consensus        18 ~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC--~A~n~~g~~~   87 (103)
T d1iama1          18 VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSC--RTELDLRPQG   87 (103)
T ss_dssp             TTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEE--EEEEECGGGT
T ss_pred             CCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEE--EEEeCCCCcc
Confidence            36889999998765443332222222111        00111223333     3789998  7899998653

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=90.96  E-value=0.12  Score=33.19  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=25.2

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|.-  ..+.-.|.|.+++.+|++.|-|...
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEec
Confidence            5788864  3445679999999999999999643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=90.91  E-value=0.053  Score=33.29  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             eEEEEceeCCCCCEEEEEEEEc
Q psy15979         18 HTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      -.+.|.+|+.+|+|+|.|.-..
T Consensus        57 a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          57 ANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEB
T ss_pred             EEEEEcccCcccCeEEEEEEEc
Confidence            4689999999999999998764

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.87  E-value=0.21  Score=31.99  Aligned_cols=33  Identities=9%  Similarity=0.334  Sum_probs=25.8

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.+..  ..+.-.|.|.+++.+|++.|-|....
T Consensus        66 gR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          66 DKATLTVDRSSTTAYIELVRLTSNDSAVYYCARED  100 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             hcceeeeccCcceEEccccccCCCcceEEEeeecC
Confidence            5888864  34455699999999999999997543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=90.84  E-value=0.078  Score=34.26  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=24.8

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.+.-+  .+.-.|.|.+++.+|++.|-|...
T Consensus        67 ~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          67 SRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEccccccceeEEcceeecccccceEEeeccc
Confidence            57887642  344569999999999999999643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.84  E-value=0.14  Score=32.71  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=26.0

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|..  ..+.-.|.|.+++.+|.+.|.|....
T Consensus        66 gR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          66 DRATISADNSKNTAYLQMNSLRAEDTAVYYCARDT  100 (117)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeEEEEeccccceEEecccccCCCCceEEEEeecC
Confidence            6788864  34556799999999999999996543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.19  Score=29.79  Aligned_cols=28  Identities=25%  Similarity=0.612  Sum_probs=19.0

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEc-CCCceE
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATN-PMGKHR   45 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~   45 (152)
                      ....+.|..  .+|+|.|.|+-.+ +.|.+.
T Consensus        48 ~~tey~V~~--~D~SGeY~CVFl~~P~~~a~   76 (80)
T d3b5ha2          48 QKTEFKVDS--DDQWGEYSCVFLPEPMGTAN   76 (80)
T ss_dssp             SEEEEEECG--GGCCEEEEEEEESTTSCEEE
T ss_pred             CceEEEEec--CCCCceEEEEEcCCCcceeE
Confidence            445677764  7899999998764 344433

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.75  E-value=0.12  Score=32.97  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=24.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      .|+.|..  ..+.-.|.|.+++.+|++.|-|..
T Consensus        65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr   97 (117)
T d1c5db1          65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTR   97 (117)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEecccccceeeccccccccCcceEEEEec
Confidence            5888864  334567999999999999999953

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=90.73  E-value=0.11  Score=31.80  Aligned_cols=24  Identities=17%  Similarity=0.128  Sum_probs=19.3

Q ss_pred             CEeEEEEceeCCCCCEEEEEEEEc
Q psy15979         16 SRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      ....+.|..+...|+|+|.|.-..
T Consensus        57 ~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          57 GTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             TEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             ccEEEEEeccccccCEEEEEEeec
Confidence            345578889999999999997664

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.61  E-value=0.16  Score=32.57  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=25.4

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|.-  ..+.-.|.|.+++.+|++.|-|...
T Consensus        68 gRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          68 GRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccccceeccceeeccCCCceEEEeeEe
Confidence            5888864  2455679999999999999999654

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.60  E-value=0.076  Score=34.66  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=24.8

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .|+.|..+  .+.-.|.|.+++.+|.+.|.|...
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          66 GRVSITADESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceEEeeeeecCCCccEEEEEEEe
Confidence            57777643  345568999999999999999653

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.54  E-value=0.13  Score=32.84  Aligned_cols=31  Identities=10%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      .|+.+..+  .+.-.|.|.+++.+|++.|-|..
T Consensus        66 ~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          66 AKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence            47777643  34557999999999999999953

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=90.50  E-value=0.13  Score=33.12  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=26.1

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .|+.|.-  ..+.-.|.|.+++.+|.+.|-|....
T Consensus        68 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDH  102 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             ecceeeeecccceeccceeeeccCcceEEEEEecC
Confidence            5888863  34556799999999999999997644

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=90.43  E-value=0.095  Score=33.03  Aligned_cols=31  Identities=16%  Similarity=0.199  Sum_probs=24.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      .|+.|.-  ..+.-.|.|.+++.+|++.|-|..
T Consensus        58 gR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          58 GRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             TCEEEEECTTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred             cceEEecCCceeEEEEeecCCCcccceeeeEec
Confidence            5788864  334456999999999999999953

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.27  Score=30.04  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=22.7

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceEEE
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (152)
                      -++|.+++..|.|.|.|.|.-. |....+
T Consensus        60 Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S   87 (95)
T d1fltx_          60 GFIISNATYKEIGLLTCEATVN-GHLYKT   87 (95)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET-TEEEEE
T ss_pred             CEEEeCCCcccCeEEEEEEEEC-CEEEEE
Confidence            4899999999999999999754 555444

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=90.31  E-value=0.23  Score=32.14  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcC
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (152)
                      .|+.|..+  .+.-.|.|.+++.+|.+.|.|.....
T Consensus        66 gR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGG  101 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ceEEEeccCCccEEEeeeeeeeecceeEEEEEEecC
Confidence            57888643  45567999999999999999976543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=90.23  E-value=0.21  Score=32.09  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=25.8

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|..+  .+.-.|.|.+++.+|.+.|-|...+
T Consensus        66 gRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          66 GRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeEEEeccCCccEeEeeeeeecccCceEEEeecCC
Confidence            57888632  3456799999999999999996654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.21  E-value=0.11  Score=33.60  Aligned_cols=31  Identities=10%  Similarity=0.253  Sum_probs=25.3

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|.-  ..+.-.|.|.+++.+|.+.|.|..
T Consensus        65 gRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          65 GKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            6888863  346677999999999999999954

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.13  E-value=0.15  Score=33.17  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=25.8

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .|+.|.-+  .+.-.|.|.+++.+|++.|-|....
T Consensus        65 gR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          65 GRVTFTADQATSTAYMELTNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeEEeccCCccEEEEEeeccCCCCcEEEEEEeec
Confidence            58888643  3455699999999999999997654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.03  E-value=0.38  Score=28.21  Aligned_cols=55  Identities=7%  Similarity=-0.029  Sum_probs=32.3

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC----CCcceEEec-----CCCeEEEEEEEEcCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE----PSPMSNQLT-----GTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~----~~~~~~~L~-----~~~~Y~~rV~A~N~~G~g~  125 (152)
                      ....+.|.|.+.+.++. .+.| ++......    .....+.|.     +.+.|.|  .|.|.+|...
T Consensus        19 ~G~~v~l~C~~~g~P~p-~i~W-~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C--~a~N~~G~~~   82 (91)
T d1cs6a3          19 TGQMVTLECFAFGNPVP-QIKW-RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC--EAENIKGRDT   82 (91)
T ss_dssp             TTCCEEEECEEEEESCC-EEEE-EECCSCCSCCCSBSSSEEEECSCCGGGCEEEEE--EEEETTEEEE
T ss_pred             cCCcEEEEEEEEEccCC-EEEE-EecccccceEeeeeeeEEEeCCCCccCCEEEEE--EEEECCCEEE
Confidence            35788999988765433 3443 44332211    112233433     3889998  7799999653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.97  E-value=0.13  Score=32.91  Aligned_cols=31  Identities=13%  Similarity=0.322  Sum_probs=24.6

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|..  ..+.-.|.|.+++.+|.+.|-|..
T Consensus        66 gR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeeEecccccceeEecccccCCCCceEEEEcc
Confidence            5888863  345567999999999999999953

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=89.90  E-value=0.27  Score=31.71  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=26.2

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|.-  ..+.-.|.|.+++.+|.+.|-|....
T Consensus        66 gRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cceEEeccCccceEeeeeeccCCccceeEeEeecc
Confidence            5788864  34566799999999999999997543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=89.82  E-value=0.33  Score=28.56  Aligned_cols=18  Identities=11%  Similarity=0.200  Sum_probs=13.8

Q ss_pred             cCCCeEEEEEEEEcCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      ++.+.|.|  .|.|.+|...
T Consensus        68 ~D~G~Y~C--~a~N~~G~~~   85 (94)
T d1biha1          68 SDEGHYQC--FAETPAGVAS   85 (94)
T ss_dssp             GGCEEEEE--EEEETTEEEE
T ss_pred             hcCeEEEE--EEEeCCCEEE
Confidence            34788988  7799999643

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=89.80  E-value=0.14  Score=33.47  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=25.8

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|.-+  .+.-.|.|.+++.+|.+.|.|....
T Consensus        66 gRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          66 GRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             TTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEBS
T ss_pred             EeEEEeccCCCceeEecEeeeCcccceeeEEEEec
Confidence            58888643  3445699999999999999996543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=89.77  E-value=0.14  Score=32.64  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .|+.|..  ..+.-.|.|.+++.+|.+.|-|.-..
T Consensus        65 gR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          65 SRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER   99 (116)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             ccceEeccCCCceEEcceeeeeeccceEEEEEEeC
Confidence            4787864  33455699999999999999996543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.72  E-value=0.51  Score=27.26  Aligned_cols=56  Identities=14%  Similarity=0.039  Sum_probs=31.3

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCCCC-----cceEE-----ecCCCeEEEEEEEEcCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPS-----PMSNQ-----LTGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~-----~~~~~-----L~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      ..+.+.|.|.+.+..|...+.| ++........     ...+.     ..+.+.|.|  .|.|.+|...
T Consensus        16 ~G~~~~l~C~~~~~~p~~~v~W-~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~   81 (89)
T d1gl4b_          16 PGADVTFICTAKSKSPAYTLVW-TRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVC--TGSNMFAMDQ   81 (89)
T ss_dssp             TTCCEEEEEEEEESSSCCEEEE-EEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEE--EEECSSCEEE
T ss_pred             CCCcEEEEEEccCCCCCCEEEE-ecCCceeeccccEeeceEEEEecCCcccCEEEEE--EEEECCCEEE
Confidence            3577888888865444444444 3321111111     12233     344889998  7799999653

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.1  Score=30.57  Aligned_cols=55  Identities=9%  Similarity=0.068  Sum_probs=31.4

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC-CCcceE-----EecCCCeEEEEEEEEcCCCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE-PSPMSN-----QLTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~-~~~~~~-----~L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .+.++.|.|.+.+.++ ..+.|. + ..... .....+     ...+.+.|.|  .|.|..|.-..
T Consensus        13 ~G~~~~L~C~~~g~p~-P~i~W~-~-~~~~~~~~~~~l~i~~v~~~DsG~Y~C--~a~N~~g~~~~   73 (84)
T d2nxyb2          13 QGQSLTLTLESPPGSS-PSVQCR-S-PRGKNIQGGKTLSVSQLELQDSGTWTC--TVLQNQKKVEF   73 (84)
T ss_dssp             TTCCEEEEEECCTTCC-CEEEEE-C-TTCCEEEESSEEEESSCCGGGCEEEEE--EEEETTEEEEE
T ss_pred             CCCeEEEEEEeEcCCc-hheEEE-e-ecccceeeeeeeeeeecccccccEEEE--EEEeCCCEEEE
Confidence            3578888888877643 334432 2 11111 111222     3444899999  77999986543

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.13  Score=31.66  Aligned_cols=27  Identities=11%  Similarity=0.075  Sum_probs=18.9

Q ss_pred             eEEEEceeCCCCCEEEEEEEEcCCCce
Q psy15979         18 HTLMIRKVVASDFGNYSCEATNPMGKH   44 (152)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (152)
                      +.|++.-...+|...|+|+|+|.++..
T Consensus        64 s~l~~~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          64 LEVTFTPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             EEEEccCChHHCCcEEEEEEEcCcCCc
Confidence            457775554455558999999987653

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.33  E-value=0.16  Score=32.43  Aligned_cols=30  Identities=17%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCE   36 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~   36 (152)
                      +|+.|..  ..+.-.|.|.+++.+|++.|-|.
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA   97 (118)
T d2jelh1          66 GKATMTVDKSSSTAYMELARLTSEDSAIYYCA   97 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccEEEecccCcceEeecccccccCcceeeeEE
Confidence            5787764  33455799999999999999994

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.22  E-value=0.19  Score=32.42  Aligned_cols=32  Identities=13%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..+  .+.-.|.|.+++.+|++.|-|...
T Consensus        66 ~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          66 DKAILTADRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEecccCcceEeeeeeccCcccceEEEEeee
Confidence            57777542  355669999999999999999654

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=89.14  E-value=0.1  Score=33.89  Aligned_cols=30  Identities=17%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (152)
                      +|+.|..+  .+.-.|.|.+++.+|.+.|-|.
T Consensus        66 gR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCA   97 (127)
T d1n0xh1          66 DRVTFTADTSANTAYMELRSLRSADTAVYYCA   97 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccceEecccCceEEEEEEEccCCCCceEEEEE
Confidence            57888643  3456699999999999999995

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.23  Score=30.08  Aligned_cols=21  Identities=14%  Similarity=0.264  Sum_probs=15.7

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNSTN  128 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s~  128 (152)
                      .+.+.|+|  .|.|.+|..+.+.
T Consensus        72 ~D~G~Y~C--~a~N~~G~~~~~~   92 (105)
T d1wwca_          72 YNNGNYTL--IAKNPLGTANQTI   92 (105)
T ss_dssp             GGCEEEEE--EEEETTEEEEEEE
T ss_pred             ccceEEEE--EEEcCCCEEEEEE
Confidence            34788988  7799999875443

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.94  E-value=0.21  Score=32.22  Aligned_cols=31  Identities=13%  Similarity=0.274  Sum_probs=25.0

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|..+  .+.-.|.|.+++.+|.+.|.|..
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR   98 (124)
T d1yedb1          66 GKATLTADKSSSTAYMQLSSLKSEDSAVYFCTR   98 (124)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred             eeEEEEccCCcceEEecccccCCCcceEEEecc
Confidence            58888643  45566999999999999999964

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.94  E-value=0.34  Score=31.50  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEcCC
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM   41 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (152)
                      .|+.|.-+  .+.-.|.+.+++.+|++.|-|......
T Consensus        65 gR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~~~~  101 (133)
T d1rzfh1          65 GRVTISADESTRTVYLHLRGLRSDDTAVYYCASNSIA  101 (133)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEECC
T ss_pred             ccEEEEeccCcceeEEeeccCCCCCCEEEEeeeccCC
Confidence            68888643  456679999999999999999655433

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.88  E-value=0.21  Score=32.00  Aligned_cols=32  Identities=13%  Similarity=0.235  Sum_probs=25.5

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..  ..+.-.|.|.+++.+|.+.|.|...
T Consensus        66 gRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          66 GRATLTVDTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEecCcceEEeccccccCCCcceEEEEEEc
Confidence            6787763  3456779999999999999999643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=88.85  E-value=0.25  Score=32.10  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      .|+.|.-+  .+.-.|.|.+++.+|++.|-|...
T Consensus        68 gR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          68 GRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEecccccceeecceeccccCCceEEEEecc
Confidence            57878643  456679999999999999999755

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=88.79  E-value=0.23  Score=29.34  Aligned_cols=55  Identities=7%  Similarity=0.010  Sum_probs=33.4

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC--CCcceEE-----ecCCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--PSPMSNQ-----LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .++.+.|.|.+.+..|...|.| |+....-.  .....+.     .++.+.|.|  .|.|..|..
T Consensus        14 eG~~v~L~C~~~~~~p~~~~~W-~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C--~a~n~~g~~   75 (88)
T d2fcba2          14 EGETIVLRCHSWKDKPLVKVTF-FQNGKSKKFSRSDPNFSIPQANHSHSGDYHC--TGNIGYTLY   75 (88)
T ss_dssp             TTCCEEEEEEEGGGCCCEEEEE-EETTEEEEEESSCCEEEETTCCGGGCEEEEE--EEEETTEEE
T ss_pred             cCCeEEEEEEecCCCCCcEEEE-EeecccccccccccccccCccCHHHCCeEEE--EEEeCCCCE
Confidence            4689999999876666555554 44211100  1122333     444899999  578988854

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.62  E-value=0.29  Score=31.60  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .|+.|..+  .+.-.|.|.+++.+|.+.|-|....
T Consensus        66 gR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~~  100 (127)
T d2fx7h1          66 GRITITADRSTSTAYLELNSLRPEDTAVYYCAREG  100 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEeccCccceEeeeecccCcccceEEEEeecc
Confidence            57878643  3556799999999999999997553

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=88.58  E-value=0.16  Score=32.43  Aligned_cols=31  Identities=13%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      .|+.|..  ..+.-.|.|.+++.+|.+.|.|..
T Consensus        66 gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          66 DKARLTVDTSSSTAYMQFSSLTTEDSAIYYCAR   98 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEecCccceEEecccccCCCcceEEEEee
Confidence            4777753  335567999999999999999954

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=88.51  E-value=0.12  Score=30.73  Aligned_cols=55  Identities=7%  Similarity=-0.064  Sum_probs=33.0

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC--CCcceE-----EecCCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE--PSPMSN-----QLTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~--~~~~~~-----~L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      .++.+.|.|...+..|...|.| |+....-.  .....+     ..++.+.|.|  .|.|..|..
T Consensus        16 eG~~v~L~C~~~~~~p~~~~~W-~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C--~a~n~~~~~   77 (89)
T d1fnla2          16 EEDPIHLRCHSWKNTALHKVTY-LQNGKDRKYFHHNSDFHIPKATLKDSGSYFC--RGLVGSKNV   77 (89)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEE-EETTEEEEEEEECCCEEESSCCGGGCEEEEE--EEEETTEEE
T ss_pred             cCCeEEEEEEecCCCCCcEEEE-EEcccccceeccccccEECccceeccceEEE--EEEeCCCCe
Confidence            4688999999876666666665 43211000  011222     3444889999  568888753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.33  E-value=0.24  Score=30.08  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=21.7

Q ss_pred             EEEEceeCCCCCEEEEEEEEcCCCceEE
Q psy15979         19 TLMIRKVVASDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (152)
                      .|.+..+-.+|.|.|+|.|.=.-|..++
T Consensus        69 vLhF~pvl~sDnGsYrCSanf~s~vieS   96 (104)
T d1xaua_          69 VLHFKPIHLSDNGSYSCSTNFNSQVINS   96 (104)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEEeeeeeecCCCceEEecCCChhheec
Confidence            4778889999999999998755554443

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=88.19  E-value=0.37  Score=30.72  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=24.9

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|..  ..+.-.|.|.+++.+|.+.|-|..
T Consensus        66 gR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1ncwh1          66 SRISITRDTSKNQFFLQLNSVTTEDTATYYCAG   98 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceEecccccceeeccccccccCCceEEEEeE
Confidence            5888864  345567999999999999999953

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.28  Score=28.92  Aligned_cols=18  Identities=6%  Similarity=0.108  Sum_probs=13.9

Q ss_pred             CC-eEEEEEEEEcCCCCCCCC
Q psy15979        108 TN-QYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       108 ~~-~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+ .|.|  .|.|.+|..+.+
T Consensus        68 ~G~~Y~C--~a~N~~G~~~~s   86 (92)
T d2ifga1          68 NRKNVTC--WAENDVGRAEVS   86 (92)
T ss_dssp             TTCCEEE--CCEETTEECCEE
T ss_pred             cceEEEE--EEEcCCCEEEEE
Confidence            45 6998  779999987554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.86  E-value=0.57  Score=28.43  Aligned_cols=23  Identities=9%  Similarity=-0.091  Sum_probs=16.7

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ++.+.|.|  .|.|.+|.-..+...
T Consensus        78 ~D~G~Y~C--~a~N~~G~~~~~~~L  100 (113)
T d2dava1          78 NFAGNYRC--EVTYKDKFDSCSFDL  100 (113)
T ss_dssp             TSCEEEEE--EEECSSCEEEECCEE
T ss_pred             HHCeEEEE--EEEeCCCEEEEEEEE
Confidence            34899999  679999987555433

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=87.57  E-value=0.18  Score=32.21  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=24.8

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..  ..+.-.|.|.+++.+|.+.|-|...
T Consensus        65 gR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          65 GRFTISRDIVRNILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             TTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEeccccceeeeeccccccCCcceEEEeccc
Confidence            4777764  3345679999999999999999643

>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-alpha/beta receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=1.7  Score=26.89  Aligned_cols=50  Identities=12%  Similarity=0.122  Sum_probs=32.5

Q ss_pred             eEEEEEEecCCC-CcceEEEEEEECCCCC-CC---------cceEEecC-----CCeEEEEEEEEc
Q psy15979         70 SYNITWMVSSYT-PLEEFKIKYRKIPGNE-PS---------PMSNQLTG-----TNQYQNRRLVRK  119 (152)
Q Consensus        70 ~~~L~W~~~~~~-pi~~y~~~~r~~~~~~-~~---------~~~~~L~~-----~~~Y~~rV~A~N  119 (152)
                      ...|.|.+.... +-..|.++|+..+... +.         ...-.|++     ...|.+||+|.-
T Consensus        22 ~~iL~W~p~~~s~~~~~YtVqy~~~~~~~~W~~v~~C~~it~t~CDLT~e~~~~~~~Y~~RV~A~~   87 (109)
T d2hyma1          22 RSILSWELKNHSIVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFS   87 (109)
T ss_dssp             CEEEEEECCCSSCCCCEEEEEEEETTCTTCCEECSSSSSBSCSEEECTTTCCCSSSCEEEEEEEEE
T ss_pred             ceEEEECCCCCCCCCeEEEEEEEEEcccccCccchhhhCCCCCeEeCchhhccCCccEEEEEEEEc
Confidence            458999985433 4457999998765432 21         12334444     667999999984

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=87.37  E-value=0.19  Score=30.02  Aligned_cols=20  Identities=5%  Similarity=-0.208  Sum_probs=15.1

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      ..+.+.|.|  .|.|.+|.-..
T Consensus        70 ~~D~G~Y~c--~a~N~~G~~~~   89 (98)
T d1g1ca_          70 GEDSASIMV--KAINIAGETSS   89 (98)
T ss_dssp             GGGCEEEEE--EEEETTEEEEE
T ss_pred             cccCEEEEE--EEEECCcEEEE
Confidence            344889988  78999997543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.24  E-value=0.16  Score=32.41  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=24.4

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      .|+.|.-  ..+.-.|.|.+++.+|++.|-|....
T Consensus        65 gR~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr~~   99 (116)
T d1fn4b1          65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDL   99 (116)
T ss_dssp             TTBCCEEEGGGTEEECCEESCCCCCCEEEEEEEEC
T ss_pred             ceEEEccccccchhhcceeccCCCCCEEEEEEeec
Confidence            4666653  23445688999999999999996543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.16  E-value=1.7  Score=25.30  Aligned_cols=17  Identities=12%  Similarity=0.122  Sum_probs=12.9

Q ss_pred             cCCCeEEEEEEEEcCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ++.+.|.|  .|.|..|..
T Consensus        70 ~D~G~Y~C--~a~N~~G~~   86 (97)
T d1epfa1          70 DDAGIYKC--VVTAEDGTQ   86 (97)
T ss_dssp             GGCEEEEE--EEEETTTEE
T ss_pred             hhceEEEE--EEEeCCCcE
Confidence            33789988  679999853

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=87.15  E-value=1.1  Score=25.78  Aligned_cols=51  Identities=6%  Similarity=0.001  Sum_probs=28.4

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCCCCcceE-----EecCCCeEEEEEEEEcC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSN-----QLTGTNQYQNRRLVRKR  120 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~~~~~-----~L~~~~~Y~~rV~A~N~  120 (152)
                      .++.++|.|.+.+.++...| +||+....-......+     ...+.+.|.|+  |.|.
T Consensus        18 ~G~~v~L~C~~~~~~~~~~~-~w~~~g~~~~~~~~~l~i~~v~~~dsG~Y~C~--a~ns   73 (85)
T d2fcba1          18 QEDSVTLTCRGTHSPESDSI-QWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQ--TGQT   73 (85)
T ss_dssp             TTCEEEEEEECSSCCCTTCC-EEEETTEECTTCCSSEEEEECCGGGCEEEEEE--CTTS
T ss_pred             CCCeEEEEEEEeeccceeEE-EeecccccccccccceEEeeccccCCcEEEEE--CCCC
Confidence            47899999998776544333 3443211111111222     34458999995  4554

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.14  E-value=0.16  Score=32.61  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=24.4

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (152)
                      +|+.|..+  .+.-.|.|.+++.+|.+.|.|...
T Consensus        68 gR~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          68 GRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             TTBCCEECTTTSEEEEEEESCCGGGCEECEEEEE
T ss_pred             eeeEEccccccceeeceecccCCCcceEEEEecc
Confidence            46666543  445569999999999999999654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.04  E-value=0.57  Score=27.66  Aligned_cols=20  Identities=5%  Similarity=0.102  Sum_probs=15.4

Q ss_pred             CCeEEEEEEEEcCCCCCCCCCC
Q psy15979        108 TNQYQNRRLVRKRFDRGNSTNG  129 (152)
Q Consensus       108 ~~~Y~~rV~A~N~~G~g~~s~~  129 (152)
                      .+.|.|  .|.|.+|....+..
T Consensus        69 ~G~Y~C--~a~N~~G~~~~~~~   88 (97)
T d1koaa1          69 KGEYTV--RAKNSYGTKEEIVF   88 (97)
T ss_dssp             GSCEEE--EEEETTEEEEEEEC
T ss_pred             CEEEEE--EEEECCCEEEEEEE
Confidence            889988  77999997654433

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.51  E-value=0.83  Score=26.82  Aligned_cols=54  Identities=9%  Similarity=-0.098  Sum_probs=30.8

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCC------CCcceEE-----ecCCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNE------PSPMSNQ-----LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~------~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ...++.|.|.+.+..|...+.|  +..+...      .....+.     ..+.+.|.|  .|.|..|.-
T Consensus        17 ~G~~~~l~C~~~~g~p~p~v~W--~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C--~Asn~~g~~   81 (90)
T d1gsma1          17 LGASRQLTCRLACADRGASVQW--RGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVC--VGSCGGRTF   81 (90)
T ss_dssp             TTCCEEEEEEECCSSTTCEEEE--ESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEE--EEEETTEEE
T ss_pred             eCCcEEEEEEecCCCCccEEEE--EEeeeeeeeeeccCceeeEEcCccChhhCCcEEE--EEEeCCCcE
Confidence            3678889998764444444554  2222111      1112233     344899999  779988753

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.34  Score=29.30  Aligned_cols=24  Identities=4%  Similarity=0.257  Sum_probs=17.6

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+.+.|.|  .|.|.+|....+...
T Consensus        71 ~~D~G~Y~C--~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          71 HMNNGDYTL--IAKNEYGKDEKQISA   94 (103)
T ss_dssp             GGGCEEEEE--EEECSSCEEEEEEEE
T ss_pred             HHhCceEEE--EEeccCCEEEEEEEE
Confidence            445899988  889999987544333

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=86.16  E-value=1.1  Score=25.82  Aligned_cols=48  Identities=6%  Similarity=-0.043  Sum_probs=26.8

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCCCCCCcceEE-----ecCCCeEEEEE
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQ-----LTGTNQYQNRR  115 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~~~~~~~~~~-----L~~~~~Y~~rV  115 (152)
                      ..++++|.|.+.+.++.. +.++|+..........++.     ..+.+.|.|++
T Consensus        19 ~G~~vtL~C~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a   71 (84)
T d1fnla1          19 EKDSVTLKCQGAYSPEDN-STQWFHNESLISSQASSYFIDAATVNDSGEYRCQT   71 (84)
T ss_dssp             TTCCEEEEEECCCBTTBC-CCEEEETTEEEESSCSEEEESSCCGGGCEEEEEEC
T ss_pred             CCCeEEEEEEeccCCCCe-EEEEeeeceeeeecceeeEecCCcccCCEEEEEEc
Confidence            468999999987665433 3344442211111223343     44489999953

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.09  E-value=0.23  Score=31.97  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=24.4

Q ss_pred             CcEEEEEc--CCEeEEEEceeCCCCCEEEEEEE
Q psy15979          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (152)
Q Consensus         7 ~r~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (152)
                      +|+.|..+  .+.-.|.|.+++.+|.+.|-|..
T Consensus        66 gR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          66 GQVTMSADRSTNTAHLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             TTCEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             eeEEEeecCCCcEEEEeeeccccccceEEEEee
Confidence            57777643  34567999999999999999943

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=86.07  E-value=0.62  Score=27.57  Aligned_cols=18  Identities=11%  Similarity=0.130  Sum_probs=14.3

Q ss_pred             cCCCeEEEEEEEEcCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGN  125 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~  125 (152)
                      ++.+.|.|  .|.|.+|..+
T Consensus        71 ~D~G~Y~C--~a~N~~G~~~   88 (97)
T d1biha3          71 EDEGVYTC--EVDNGVGKPQ   88 (97)
T ss_dssp             GGCEEEEE--EECCSSSSCE
T ss_pred             cccEEEEE--EEEECCCcEE
Confidence            44889988  7799999764

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=1.1  Score=27.09  Aligned_cols=26  Identities=12%  Similarity=0.193  Sum_probs=18.6

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      ..+.+.|.|  .|.|.+|....+....+
T Consensus        72 ~~D~G~Y~C--~A~N~~G~~~~~i~v~v   97 (107)
T d1he7a_          72 HVNNGNYTL--LAANPFGQASASIMAAF   97 (107)
T ss_dssp             GGGCEEEEE--EEEETTEEEEEEEEECC
T ss_pred             HHHCcEEEE--EEEeCCCEEEEEEEEEE
Confidence            445899998  77999998755544433

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.64  E-value=0.8  Score=27.33  Aligned_cols=18  Identities=11%  Similarity=0.021  Sum_probs=14.1

Q ss_pred             CCCeEEEEEEEEcCCCCCCC
Q psy15979        107 GTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       107 ~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      +.+.|.|  .|.|..|.-.+
T Consensus        76 D~G~Y~C--~A~N~~G~~~s   93 (104)
T d2aw2a1          76 DNGSYRC--SANFQSNLIES   93 (104)
T ss_dssp             GCEEEEE--EEEETTEEEEC
T ss_pred             HCCeEEE--EEEcCCCeEEE
Confidence            4899988  88999996443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=1.1  Score=26.73  Aligned_cols=62  Identities=13%  Similarity=-0.044  Sum_probs=37.3

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCC------CC-C---CcceEEecC-----CCeEEEEEEEEcCCCCCCCCCCcc
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPG------NE-P---SPMSNQLTG-----TNQYQNRRLVRKRFDRGNSTNGGL  131 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~------~~-~---~~~~~~L~~-----~~~Y~~rV~A~N~~G~g~~s~~~~  131 (152)
                      ..+.++|.|....  +...|.+.......      .. .   ....+.|.+     ++.|.|+  .+|.++|+++|+...
T Consensus        20 ~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~--y~~~~~~S~~Sdpl~   95 (99)
T d1ucta1          20 LDGSVKIQCQAIR--EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ--YRIGHYRFRYSDTLE   95 (99)
T ss_dssp             TTCCEEEEECCCT--TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE--EEETTTEEEECCCEE
T ss_pred             CCCeEEEEEcCCC--CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEE--EECCCcccCCCCCEE
Confidence            3688999998653  33456654322110      00 0   112344444     8899996  478999999998764


Q ss_pred             c
Q psy15979        132 I  132 (152)
Q Consensus       132 ~  132 (152)
                      +
T Consensus        96 L   96 (99)
T d1ucta1          96 L   96 (99)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=0.64  Score=27.24  Aligned_cols=54  Identities=4%  Similarity=-0.189  Sum_probs=32.1

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECCC--CCCCcceE-----EecCCCeEEEEEEEEcCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPG--NEPSPMSN-----QLTGTNQYQNRRLVRKRFDR  123 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~~--~~~~~~~~-----~L~~~~~Y~~rV~A~N~~G~  123 (152)
                      .++.+.|+|...+..+...|.| |+....  .......+     ..++.+.|.|  .|.|..|.
T Consensus        14 eG~~v~L~C~~~~~~~~~~~~w-~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C--~a~n~~~~   74 (89)
T d1f2qa2          14 EGQPLFLRCHGWRNWDVYKVIY-YKDGEALKYWYENHNISITNATVEDSGTYYC--TGKVWQLD   74 (89)
T ss_dssp             TTSCEEEEEEEGGGCCEEEEEE-EETTEECCSCCCSSEEEESSCCGGGCEEEEE--EEEETTEE
T ss_pred             CCCEEEEEEEecCCCCCeEEEE-EEeeeccccccccceEEEeeeeeecCcEEEE--EEEeCCCC
Confidence            4688999999876555555554 443211  11122233     3444899999  57887764

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=85.17  E-value=0.5  Score=30.43  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             CcEEEEE--cCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+.|..  ..+.-.|.|.+++.+|.+.|-|....
T Consensus        66 gR~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr~~  100 (127)
T d3cx5j1          66 DRLSITRDTSKNQFFLKLNSVTTEDTATYYCARSE  100 (127)
T ss_dssp             TTBCCEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceeecccccceeecceeccccccceEEEeeeec
Confidence            4666653  34566799999999999999997543

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=0.45  Score=28.84  Aligned_cols=20  Identities=20%  Similarity=0.032  Sum_probs=15.9

Q ss_pred             cCCCeEEEEEEEEcCCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNST  127 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~s  127 (152)
                      .+.+.|.|  .|.|.+|....+
T Consensus        82 ~D~G~Y~C--~a~N~~G~~~~~  101 (110)
T d2avga1          82 AFTGGYRC--EVSTKDKFDCSN  101 (110)
T ss_dssp             TCCEEEEE--EEEETTEEEEEE
T ss_pred             HHCcEEEE--EEEECCCeEEEE
Confidence            34899988  779999988655

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=82.82  E-value=0.84  Score=27.94  Aligned_cols=32  Identities=9%  Similarity=0.098  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCEeEEEEceeCCCCCEEEEEEEEc
Q psy15979          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (152)
Q Consensus         7 ~r~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (152)
                      +|+..... ....|.|..++.+|++.|.|.+.-
T Consensus        64 ~~f~~~~~-~~~~l~l~~~~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          64 ADYLATRV-TDTELRLQVANMSQGRTLYCTCSA   95 (112)
T ss_dssp             EEEEEEEE-ETTEEEEEEESCCSCEEEEEEEES
T ss_pred             cccccccc-cccEEEEecCCccCCccEEEEEec
Confidence            45554422 235789999999999999998653

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.67  E-value=1.3  Score=26.24  Aligned_cols=24  Identities=13%  Similarity=0.099  Sum_probs=17.3

Q ss_pred             ecCCCeEEEEEEEEcCCCCCCCCCCc
Q psy15979        105 LTGTNQYQNRRLVRKRFDRGNSTNGG  130 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g~~s~~~  130 (152)
                      ..+.+.|.|  .|.|.+|....+...
T Consensus        65 ~~D~G~Y~C--~a~N~~G~~~~~~~l   88 (101)
T d2cqva1          65 QEHCGCYTL--LVENKLGSRQAQVNL   88 (101)
T ss_dssp             TTTCEEEEE--EEECSSCEEECCEEE
T ss_pred             cccCEEEEE--EEEECCCEEEEEEEE
Confidence            344899988  779999987555433

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.48  E-value=2.9  Score=24.20  Aligned_cols=54  Identities=9%  Similarity=0.083  Sum_probs=29.5

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEE--ECCCCC-----CCcceEE-----ecCCCeEEEEEEEEcCCCCC
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYR--KIPGNE-----PSPMSNQ-----LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r--~~~~~~-----~~~~~~~-----L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..+.+.|.|.+.+. + ..+.|+..  ......     .....+.     ..+.+.|.|  .|.|.+|..
T Consensus        17 ~g~~v~l~C~~~~~-~-~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C--~a~N~~g~~   82 (96)
T d1l6za2          17 ELDSVTLTCLSNDI-G-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC--EISNPVSVR   82 (96)
T ss_dssp             TTSCEEEEECCCCS-S-CEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEE--EEESSSCCE
T ss_pred             CCCeEEEEEccCCC-C-CCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEE--EEEeCCCCe
Confidence            36789999987553 3 34554331  111111     1112233     334789998  679998854

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=82.34  E-value=2.2  Score=25.10  Aligned_cols=19  Identities=11%  Similarity=0.146  Sum_probs=14.9

Q ss_pred             cCCCeEEEEEEEEcCCCCCCC
Q psy15979        106 TGTNQYQNRRLVRKRFDRGNS  126 (152)
Q Consensus       106 ~~~~~Y~~rV~A~N~~G~g~~  126 (152)
                      .+.+.|.|  .|.|.+|....
T Consensus        84 ~D~G~Y~C--~a~N~~G~~~~  102 (109)
T d2fdbp2          84 EDAGEYTC--LAGNSIGISFH  102 (109)
T ss_dssp             GGCEEEEE--EEECSSCEEEE
T ss_pred             HHCeEEEE--EEEECCCEEEE
Confidence            34899999  77999997643

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.67  E-value=0.23  Score=29.80  Aligned_cols=25  Identities=36%  Similarity=0.670  Sum_probs=15.8

Q ss_pred             eEEEEceeCC-CCCEEEEEEEEcCCCceEE
Q psy15979         18 HTLMIRKVVA-SDFGNYSCEATNPMGKHRA   46 (152)
Q Consensus        18 ~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~   46 (152)
                      .+|+| .|.. .|+|+|||. .+  |..-.
T Consensus        51 ntltV-~VkE~~~aGnYTCh-k~--g~~Ln   76 (87)
T d3d85d1          51 KTLTI-QVKEFGDAGQYTCH-KG--GEVLS   76 (87)
T ss_dssp             SEEEE-EECSGGGCEEEEEE-ET--TEEEE
T ss_pred             CEEEE-EEEeccCCcceeEe-CC--CcEee
Confidence            35666 4544 699999996 33  55444

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.26  E-value=2.2  Score=24.35  Aligned_cols=18  Identities=11%  Similarity=0.065  Sum_probs=13.6

Q ss_pred             ecCCCeEEEEEEEEcCCCCC
Q psy15979        105 LTGTNQYQNRRLVRKRFDRG  124 (152)
Q Consensus       105 L~~~~~Y~~rV~A~N~~G~g  124 (152)
                      ..+.+.|.|  .|.|.+|..
T Consensus        63 ~~D~G~Y~C--~a~N~~G~~   80 (91)
T d1rhfa1          63 RSDAGRYWC--QVEDGGETE   80 (91)
T ss_dssp             GGGCEEEEE--EESSCTTCE
T ss_pred             cccCEEEEE--EEEECCCCE
Confidence            344789998  679999864

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.71  E-value=3.1  Score=24.47  Aligned_cols=61  Identities=10%  Similarity=-0.069  Sum_probs=36.8

Q ss_pred             CCCeEEEEEEecCCCCcceEEEEEEECC-----CCC---CCc-ceEEecC-----CCeEEEEEEEEcCCCCCCCCCCccc
Q psy15979         67 LPNSYNITWMVSSYTPLEEFKIKYRKIP-----GNE---PSP-MSNQLTG-----TNQYQNRRLVRKRFDRGNSTNGGLI  132 (152)
Q Consensus        67 ~~~~~~L~W~~~~~~pi~~y~~~~r~~~-----~~~---~~~-~~~~L~~-----~~~Y~~rV~A~N~~G~g~~s~~~~~  132 (152)
                      .+..++|.|.....  ...|.+. +...     ...   ... ..+.|.+     ++.|.|+  .+|.++|+++|+..-+
T Consensus        17 ~G~~VTL~C~~~~~--~~~f~L~-k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~--y~~~~~~S~~Sd~leL   91 (95)
T d1olla1          17 KEKQVTICCQGNYG--AVEYQLH-FEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCI--YRVGELWSEPSNLLDL   91 (95)
T ss_dssp             TTCCEEEEEECCTT--CCEEEEE-ETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEE--EEETTEECCCCCCEEE
T ss_pred             CCCcEEEEEecCCC--ccEEEEE-ECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEE--eCCCCCccCCCCCEEE
Confidence            36889999986532  3345443 2210     001   111 3455544     8899985  5789999999988643