Psyllid ID: psy16005
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 248 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VU68 | 608 | Actin-interacting protein | yes | N/A | 0.995 | 0.406 | 0.475 | 7e-60 | |
| Q5RKI0 | 606 | WD repeat-containing prot | yes | N/A | 0.459 | 0.188 | 0.615 | 4e-43 | |
| Q9W7F2 | 607 | WD repeat-containing prot | N/A | N/A | 0.495 | 0.202 | 0.582 | 1e-42 | |
| Q6DIF4 | 607 | WD repeat-containing prot | yes | N/A | 0.495 | 0.202 | 0.589 | 1e-42 | |
| Q6PAX7 | 607 | WD repeat-containing prot | N/A | N/A | 0.459 | 0.187 | 0.607 | 1e-42 | |
| O88342 | 606 | WD repeat-containing prot | yes | N/A | 0.459 | 0.188 | 0.607 | 2e-42 | |
| O93277 | 609 | WD repeat-containing prot | yes | N/A | 0.495 | 0.201 | 0.568 | 2e-42 | |
| O75083 | 606 | WD repeat-containing prot | yes | N/A | 0.983 | 0.402 | 0.380 | 2e-42 | |
| Q2KJH4 | 606 | WD repeat-containing prot | yes | N/A | 0.495 | 0.202 | 0.568 | 6e-42 | |
| P90587 | 601 | 66 kDa stress protein OS= | N/A | N/A | 0.475 | 0.196 | 0.616 | 3e-39 |
| >sp|Q9VU68|WDR1_DROME Actin-interacting protein 1 OS=Drosophila melanogaster GN=flr PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 230 bits (587), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/265 (47%), Positives = 161/265 (60%), Gaps = 18/265 (6%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 61
+Y NK I+ATLPRTQRGQPIVLG DPKGKNFLYTNGNSVIIRNIENPAI+D+YTEHSCAV
Sbjct: 8 AYENKNIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAV 67
Query: 62 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV 121
NVAKYSPSGFYIASGD SGK+RIWDTVNKEH+LKNEF PI GPIKDI+WSPDNQR++++
Sbjct: 68 NVAKYSPSGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVG 127
Query: 122 ENGAKVSSLPIDYEPSSI-----------SLDHEHG---LVAVGGADSKISIVEN---GA 164
E + + + +S+ S D + G D+ I++ E
Sbjct: 128 EGRERFGHVFMSETGTSVGEISGQSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKF 187
Query: 165 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHLGPVTDCSF 223
K++ ++ + A G D KV +Y+ + L + H G V ++
Sbjct: 188 KMTKQDHSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKGGVYALAW 247
Query: 224 SPSNEYLVASDAHRKVVLYRVPDFE 248
P + L+ + L+ V E
Sbjct: 248 KPDSTQLLTCSGDKTCRLWTVESRE 272
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Essential for organismal and cell viability. Required for the development of normal wing cell planar polarity. Drosophila melanogaster (taxid: 7227) |
| >sp|Q5RKI0|WDR1_RAT WD repeat-containing protein 1 OS=Rattus norvegicus GN=Wdr1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 100/130 (76%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG +LGGDPKG NFLYTNG VI+RNI+NPA++DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGDISGK+RIWDT KEHILK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSL 130
E K ++
Sbjct: 121 GEGREKFGAV 130
|
Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Rattus norvegicus (taxid: 10116) |
| >sp|Q9W7F2|WDR1A_XENLA WD repeat-containing protein 1-A OS=Xenopus laevis GN=wdr1-a PE=2 SV=2 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 103/139 (74%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG +L GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+
Sbjct: 1 MPYELKKVFASLPQMERGVAKILAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VA+Y+PSGFYIASGD SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 AVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSI 139
E K +S+ + SS+
Sbjct: 121 GEGREKFASVFLWDTGSSV 139
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin. Xenopus laevis (taxid: 8355) |
| >sp|Q6DIF4|WDR1_XENTR WD repeat-containing protein 1 OS=Xenopus tropicalis GN=wdr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 103/139 (74%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++ GDPKG NFLYTNG SVIIRNIENPAI+DIYTEH+
Sbjct: 1 MPYELKKVFASLPQVERGVAKIITGDPKGNNFLYTNGKSVIIRNIENPAIADIYTEHAHP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VA+Y+PSGFYIASGD SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSI 139
E K S+ + SS+
Sbjct: 121 GEGREKFGSVFLWDTGSSV 139
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin. Xenopus tropicalis (taxid: 8364) |
| >sp|Q6PAX7|WDR1B_XENLA WD repeat-containing protein 1-B OS=Xenopus laevis GN=wdr1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 99/130 (76%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++ GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVAKIIAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VA+Y+PSGFYIASGD SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSL 130
E K S+
Sbjct: 121 GEGREKFGSV 130
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin. Xenopus laevis (taxid: 8355) |
| >sp|O88342|WDR1_MOUSE WD repeat-containing protein 1 OS=Mus musculus GN=Wdr1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 100/130 (76%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG +LGGDPKG +FLYTNG VI+RNI+NPAI+DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGDISGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSL 130
E K ++
Sbjct: 121 GEGREKFGAV 130
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Mus musculus (taxid: 10090) |
| >sp|O93277|WDR1_CHICK WD repeat-containing protein 1 OS=Gallus gallus GN=WDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 104/139 (74%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++GGDPKG NFLYTNG V+IRNI+NPAI+DIYTEH+
Sbjct: 3 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVVIRNIDNPAIADIYTEHAHQ 62
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGD+SGK+RIWDT KEH+LK E+ P G IKD+AW+ D++R+ +
Sbjct: 63 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDLAWTEDSKRIAVV 122
Query: 121 VENGAKVSSLPIDYEPSSI 139
E K ++ + SS+
Sbjct: 123 GEGREKFGAVFLWDSGSSV 141
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Gallus gallus (taxid: 9031) |
| >sp|O75083|WDR1_HUMAN WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 19/263 (7%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++GGDPKG NFLYTNG VI+RNI+NPA++DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGD+SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSISLDHEHGLV--------------AVGGADSKISIVENGAKV 166
E K ++ + SS+ H V A G D+ + E
Sbjct: 121 GEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFK 180
Query: 167 SSLPI-DYEP--SSISLDHEHGLVAVGGADSKVHIYE--LNNKSLSPKAELDHLGPVTDC 221
I D+ + + + A AD +++IY+ K + H G +
Sbjct: 181 FKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYAI 240
Query: 222 SFSPSNEYLVASDAHRKVVLYRV 244
S+SP + +L+++ + ++ V
Sbjct: 241 SWSPDSTHLLSASGDKTSKIWDV 263
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Homo sapiens (taxid: 9606) |
| >sp|Q2KJH4|WDR1_BOVIN WD repeat-containing protein 1 OS=Bos taurus GN=WDR1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 104/139 (74%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++GGDPKG +FLYTNG VI+RNI+NPAI+DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGD+SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSI 139
E K ++ + SS+
Sbjct: 121 GEGREKFGAVFLWDSGSSV 139
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Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Bos taurus (taxid: 9913) |
| >sp|P90587|WD66_PHYPO 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 92/120 (76%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MS++ K I++ P T RG+P+VLGGDPKG NFLYT GN+VIIRNI+NP +DIY EH+
Sbjct: 1 MSFALKTIYSPSPATTRGKPVVLGGDPKGNNFLYTCGNAVIIRNIKNPNQADIYYEHAQP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VAKY+PSGFYIASGD+SG +RIWDT EH LK E + GPI DIAWS D+QR++ +
Sbjct: 61 ATVAKYAPSGFYIASGDLSGTLRIWDTTQLEHPLKIELKVLSGPIADIAWSADSQRLVVV 120
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Associated with the process of cyst formation. Physarum polycephalum (taxid: 5791) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 248 | ||||||
| 328719143 | 603 | PREDICTED: actin-interacting protein 1-l | 0.959 | 0.394 | 0.526 | 2e-63 | |
| 328719145 | 604 | PREDICTED: actin-interacting protein 1-l | 0.959 | 0.394 | 0.526 | 2e-63 | |
| 340715670 | 603 | PREDICTED: actin-interacting protein 1-l | 0.955 | 0.393 | 0.520 | 3e-63 | |
| 340715668 | 602 | PREDICTED: actin-interacting protein 1-l | 0.955 | 0.393 | 0.520 | 3e-63 | |
| 350417912 | 602 | PREDICTED: actin-interacting protein 1-l | 0.955 | 0.393 | 0.520 | 3e-63 | |
| 350417914 | 603 | PREDICTED: actin-interacting protein 1-l | 0.955 | 0.393 | 0.520 | 3e-63 | |
| 383853060 | 603 | PREDICTED: actin-interacting protein 1-l | 0.955 | 0.393 | 0.520 | 4e-63 | |
| 345479794 | 602 | PREDICTED: actin-interacting protein 1-l | 0.955 | 0.393 | 0.516 | 3e-62 | |
| 307186838 | 564 | Putative actin-interacting protein 1 [Ca | 0.939 | 0.413 | 0.512 | 5e-62 | |
| 270011670 | 602 | hypothetical protein TcasGA2_TC005722 [T | 0.955 | 0.393 | 0.505 | 1e-61 |
| >gi|328719143|ref|XP_003246675.1| PREDICTED: actin-interacting protein 1-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 164/268 (61%), Gaps = 30/268 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSYSNKYI++TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR+IENPAISD+YTEHSCA
Sbjct: 1 MSYSNKYIYSTLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRDIENPAISDVYTEHSCA 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGK+RIWDTVNKEHILKNEFHP GGPIKDI+WSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKIRIWDTVNKEHILKNEFHPFGGPIKDISWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSSISLDHEHGLVAVGGADSKISIV 160
E G V S PI D+ PS + G D+ I +
Sbjct: 121 GEGRERFGHVFMAETGTSVGEITGQSKPINSCDFRPS------RPFRIVTGSEDNTIGVF 174
Query: 161 EN---GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-SPKAELDHLG 216
E K++ ++ A G D KV +YE N L S H G
Sbjct: 175 EGPPFKFKMTKQDHSRFVQAVRFSPNGNFFASAGFDGKVFLYEGTNADLVSEIGSPAHKG 234
Query: 217 PVTDCSFSPSNEYLVASDAHRKVVLYRV 244
V ++S + L+ S + L+ V
Sbjct: 235 GVYGVAWSADSTRLLTSSGDKTCKLWDV 262
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328719145|ref|XP_001943831.2| PREDICTED: actin-interacting protein 1-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/268 (52%), Positives = 164/268 (61%), Gaps = 30/268 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSYSNKYI++TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIR+IENPAISD+YTEHSCA
Sbjct: 1 MSYSNKYIYSTLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRDIENPAISDVYTEHSCA 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGK+RIWDTVNKEHILKNEFHP GGPIKDI+WSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKIRIWDTVNKEHILKNEFHPFGGPIKDISWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSSISLDHEHGLVAVGGADSKISIV 160
E G V S PI D+ PS + G D+ I +
Sbjct: 121 GEGRERFGHVFMAETGTSVGEITGQSKPINSCDFRPS------RPFRIVTGSEDNTIGVF 174
Query: 161 EN---GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-SPKAELDHLG 216
E K++ ++ A G D KV +YE N L S H G
Sbjct: 175 EGPPFKFKMTKQDHSRFVQAVRFSPNGNFFASAGFDGKVFLYEGTNADLVSEIGSPAHKG 234
Query: 217 PVTDCSFSPSNEYLVASDAHRKVVLYRV 244
V ++S + L+ S + L+ V
Sbjct: 235 GVYGVAWSADSTRLLTSSGDKTCKLWDV 262
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340715670|ref|XP_003396332.1| PREDICTED: actin-interacting protein 1-like isoform 2 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 163/269 (60%), Gaps = 32/269 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSY KYIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC
Sbjct: 1 MSYETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D+ P+ I+ ++ + G K
Sbjct: 121 GEGRERFGHVFMAETGTSVGEISGQSKPINSCDFRPTRPFRLITGSEDNTIAVFEGPPFK 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHL 215
+ + + Y PS L A G D KV IY+ + L + H
Sbjct: 181 FKMTKQEHTRFVQAVRYSPSG-------NLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQ 233
Query: 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
G V ++ P L+ + + L+ V
Sbjct: 234 GGVYGVAWKPDGTQLLTASGDKTCKLWDV 262
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340715668|ref|XP_003396331.1| PREDICTED: actin-interacting protein 1-like isoform 1 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 163/269 (60%), Gaps = 32/269 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSY KYIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC
Sbjct: 1 MSYETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D+ P+ I+ ++ + G K
Sbjct: 121 GEGRERFGHVFMAETGTSVGEISGQSKPINSCDFRPTRPFRLITGSEDNTIAVFEGPPFK 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHL 215
+ + + Y PS L A G D KV IY+ + L + H
Sbjct: 181 FKMTKQEHTRFVQAVRYSPSG-------NLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQ 233
Query: 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
G V ++ P L+ + + L+ V
Sbjct: 234 GGVYGVAWKPDGTQLLTASGDKTCKLWDV 262
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350417912|ref|XP_003491641.1| PREDICTED: actin-interacting protein 1-like isoform 1 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 163/269 (60%), Gaps = 32/269 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSY KYIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC
Sbjct: 1 MSYETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D+ P+ I+ ++ + G K
Sbjct: 121 GEGRERFGHVFMAETGTSVGEISGQSKPINSCDFRPARPFRLITGSEDNTIAVFEGPPFK 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHL 215
+ + + Y PS L A G D KV IY+ + L + H
Sbjct: 181 FKMTKQEHTRFVQAVRYSPSG-------NLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQ 233
Query: 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
G V ++ P L+ + + L+ V
Sbjct: 234 GGVYGVAWKPDGTQLLTASGDKTCKLWDV 262
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350417914|ref|XP_003491642.1| PREDICTED: actin-interacting protein 1-like isoform 2 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 163/269 (60%), Gaps = 32/269 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSY KYIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC
Sbjct: 1 MSYETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D+ P+ I+ ++ + G K
Sbjct: 121 GEGRERFGHVFMAETGTSVGEISGQSKPINSCDFRPARPFRLITGSEDNTIAVFEGPPFK 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHL 215
+ + + Y PS L A G D KV IY+ + L + H
Sbjct: 181 FKMTKQEHTRFVQAVRYSPSG-------NLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQ 233
Query: 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
G V ++ P L+ + + L+ V
Sbjct: 234 GGVYGVAWKPDGTQLLTASGDKTCKLWDV 262
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383853060|ref|XP_003702042.1| PREDICTED: actin-interacting protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 163/269 (60%), Gaps = 32/269 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSY KYIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC
Sbjct: 1 MSYETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D+ P+ I+ ++ + G K
Sbjct: 121 GEGRERFGHVFMAETGTSVGEISGQSKPINSCDFRPARPFRLITGSEDNTIAVFEGPPFK 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHL 215
+ + + Y PS L A G D KV IY+ + L + H
Sbjct: 181 FKMTKQEHTRFVQAVRYSPSG-------NLFASAGFDGKVFIYDGTSSDLVGEVGSPAHQ 233
Query: 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
G V ++ P L+ + + L+ V
Sbjct: 234 GGVYGVAWKPDGTQLLTASGDKTCKLWDV 262
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345479794|ref|XP_001604198.2| PREDICTED: actin-interacting protein 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 161/269 (59%), Gaps = 32/269 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSY KYIFATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAISDIYTEHSC
Sbjct: 1 MSYETKYIFATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAISDIYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D+ PS I+ ++ + G
Sbjct: 121 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFRPSRPFRLITGSEDNTIAVFEGPPXX 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHL 215
+ Y P+ L A G D KV++Y+ + L + H
Sbjct: 181 XXXXXXXXXXXXQAVRYSPTG-------HLFASAGFDGKVYLYDGTSSELVGEVGSPAHQ 233
Query: 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
G V ++ P L+ + + L+ V
Sbjct: 234 GGVYGVAWKPDGTQLLTASGDKTCKLWDV 262
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307186838|gb|EFN72255.1| Putative actin-interacting protein 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/273 (51%), Positives = 164/273 (60%), Gaps = 40/273 (14%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MSY KYIFA LPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+DIYTEHSC
Sbjct: 1 MSYETKYIFAALPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIDNPAIADIYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD+QRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDSQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D+ P+ I+ ++ + G K
Sbjct: 121 GEGRERFGHVFMAETGTSVGEISGQSKPINSCDFRPARPFRLITGSEDNTIAVFEGPPFK 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-----SPKAE 211
+ + + Y P + L A GG D KV IY L SP
Sbjct: 181 FKMTKQEHTRFVQTVRYSP-------DGNLFASGGFDGKVFIYNGTTSDLIGEVGSPA-- 231
Query: 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
H G V ++ P ++ L+ + + L+ V
Sbjct: 232 --HQGGVYGVAWKPDSKQLLTASGDKTCKLWDV 262
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270011670|gb|EFA08118.1| hypothetical protein TcasGA2_TC005722 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/269 (50%), Positives = 167/269 (62%), Gaps = 32/269 (11%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MS+++K I+ATLPRTQRGQP+VLGGDPKGKNFLYTNGNSVIIRNI+NPAI+D+YTEHSC
Sbjct: 1 MSFASKSIYATLPRTQRGQPLVLGGDPKGKNFLYTNGNSVIIRNIQNPAIADVYTEHSCP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VNVAKYSPSGFYIASGD SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM+ +
Sbjct: 61 VNVAKYSPSGFYIASGDQSGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMVVV 120
Query: 121 ------------VENGAKV-----SSLPI---DYEPSS----ISLDHEHGLVAVGGADSK 156
E G V S PI D++P+ I+ ++ + G K
Sbjct: 121 GEGRERFGHVFMSETGTSVGEISGQSKPINSCDFKPTRPFRIITGSEDNTIAVFEGPPFK 180
Query: 157 ISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-AELDHL 215
+ + + Y P+ L A G D KV +Y+ + L + H
Sbjct: 181 FKMTKQEHSRFVQAVRYSPTG-------NLFASAGFDGKVFLYDGTSSDLVGEVGSPAHS 233
Query: 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
G V S+SP + L+ + + L+ V
Sbjct: 234 GGVYGVSWSPDGKQLLTASGDKTAKLWDV 262
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 248 | ||||||
| FB|FBgn0260049 | 608 | flr "flare" [Drosophila melano | 0.487 | 0.199 | 0.851 | 8.8e-59 | |
| UNIPROTKB|Q6DIF4 | 607 | wdr1 "WD repeat-containing pro | 0.524 | 0.214 | 0.615 | 7.7e-52 | |
| UNIPROTKB|Q9W7F2 | 607 | wdr1-a "WD repeat-containing p | 0.524 | 0.214 | 0.607 | 9.9e-52 | |
| UNIPROTKB|O93277 | 609 | WDR1 "WD repeat-containing pro | 0.625 | 0.254 | 0.532 | 4.2e-49 | |
| RGD|1305789 | 606 | Wdr1 "WD repeat domain 1" [Rat | 0.625 | 0.255 | 0.551 | 2e-47 | |
| UNIPROTKB|Q2KJH4 | 606 | WDR1 "WD repeat-containing pro | 0.633 | 0.259 | 0.531 | 3.3e-47 | |
| UNIPROTKB|O75083 | 606 | WDR1 "WD repeat-containing pro | 0.633 | 0.259 | 0.531 | 4.2e-47 | |
| MGI|MGI:1337100 | 606 | Wdr1 "WD repeat domain 1" [Mus | 0.625 | 0.255 | 0.544 | 4.2e-47 | |
| UNIPROTKB|Q6PAX7 | 607 | wdr1-b "WD repeat-containing p | 0.524 | 0.214 | 0.607 | 1.1e-42 | |
| DICTYBASE|DDB_G0278733 | 597 | aip1 "actin-interacting protei | 0.495 | 0.206 | 0.540 | 1.3e-40 |
| FB|FBgn0260049 flr "flare" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 103/121 (85%), Positives = 114/121 (94%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 61
+Y NK I+ATLPRTQRGQPIVLG DPKGKNFLYTNGNSVIIRNIENPAI+D+YTEHSCAV
Sbjct: 8 AYENKNIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAV 67
Query: 62 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV 121
NVAKYSPSGFYIASGD SGK+RIWDTVNKEH+LKNEF PI GPIKDI+WSPDNQR++++
Sbjct: 68 NVAKYSPSGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVG 127
Query: 122 E 122
E
Sbjct: 128 E 128
|
|
| UNIPROTKB|Q6DIF4 wdr1 "WD repeat-containing protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 80/130 (61%), Positives = 99/130 (76%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++ GDPKG NFLYTNG SVIIRNIENPAI+DIYTEH+
Sbjct: 1 MPYELKKVFASLPQVERGVAKIITGDPKGNNFLYTNGKSVIIRNIENPAIADIYTEHAHP 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VA+Y+PSGFYIASGD SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSL 130
E K S+
Sbjct: 121 GEGREKFGSV 130
|
|
| UNIPROTKB|Q9W7F2 wdr1-a "WD repeat-containing protein 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 79/130 (60%), Positives = 99/130 (76%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG +L GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+
Sbjct: 1 MPYELKKVFASLPQMERGVAKILAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VA+Y+PSGFYIASGD SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 AVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSL 130
E K +S+
Sbjct: 121 GEGREKFASV 130
|
|
| UNIPROTKB|O93277 WDR1 "WD repeat-containing protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 83/156 (53%), Positives = 109/156 (69%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++GGDPKG NFLYTNG V+IRNI+NPAI+DIYTEH+
Sbjct: 3 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVVIRNIDNPAIADIYTEHAHQ 62
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGD+SGK+RIWDT KEH+LK E+ P G IKD+AW+ D++R+ +
Sbjct: 63 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDLAWTEDSKRIAVV 122
Query: 121 VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSK 156
E K ++ + SS+ H V + D K
Sbjct: 123 GEGREKFGAVFLWDSGSSVGEITGHNKV-INSVDIK 157
|
|
| RGD|1305789 Wdr1 "WD repeat domain 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 86/156 (55%), Positives = 109/156 (69%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG +LGGDPKG NFLYTNG VI+RNI+NPA++DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGDISGK+RIWDT KEHILK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSK 156
E K ++ + SS+ H V + D K
Sbjct: 121 GEGREKFGAVFLWDTGSSVGEITGHNKV-INSVDIK 155
|
|
| UNIPROTKB|Q2KJH4 WDR1 "WD repeat-containing protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 84/158 (53%), Positives = 110/158 (69%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++GGDPKG +FLYTNG VI+RNI+NPAI+DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGD+SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKIS 158
E K ++ + SS+ H V + D K S
Sbjct: 121 GEGREKFGAVFLWDSGSSVGEITGHNKV-INSVDIKQS 157
|
|
| UNIPROTKB|O75083 WDR1 "WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 84/158 (53%), Positives = 110/158 (69%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++GGDPKG NFLYTNG VI+RNI+NPA++DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGD+SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKIS 158
E K ++ + SS+ H V + D K S
Sbjct: 121 GEGREKFGAVFLWDSGSSVGEITGHNKV-INSVDIKQS 157
|
|
| MGI|MGI:1337100 Wdr1 "WD repeat domain 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 85/156 (54%), Positives = 109/156 (69%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG +LGGDPKG +FLYTNG VI+RNI+NPAI+DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VAKY+PSGFYIASGDISGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSK 156
E K ++ + SS+ H V + D K
Sbjct: 121 GEGREKFGAVFLWDTGSSVGEITGHNKV-INSVDIK 155
|
|
| UNIPROTKB|Q6PAX7 wdr1-b "WD repeat-containing protein 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 79/130 (60%), Positives = 99/130 (76%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
M Y K +FA+LP+ +RG ++ GDPKG NFLYTNG SVIIRNI+NPAI+DIYTEH+
Sbjct: 1 MPYEIKKVFASLPQVERGVAKIIAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
V VA+Y+PSGFYIASGD SGK+RIWDT KEH+LK E+ P G IKDIAW+ D++R+ +
Sbjct: 61 VVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120
Query: 121 VENGAKVSSL 130
E K S+
Sbjct: 121 GEGREKFGSV 130
|
|
| DICTYBASE|DDB_G0278733 aip1 "actin-interacting protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 67/124 (54%), Positives = 91/124 (73%)
Query: 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA 60
MS + K I A P T RG+ + + GDPKG+N +Y +G+S+IIRN++NP ++DIY EH C
Sbjct: 1 MSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMVADIYYEHPCQ 60
Query: 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120
VAKY+PSG YIASGD+ G +RIWDT+ KEHILK + + G I DIAW+ DNQR++ +
Sbjct: 61 TTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAWTSDNQRLV-V 119
Query: 121 VENG 124
V +G
Sbjct: 120 VGDG 123
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6DIF4 | WDR1_XENTR | No assigned EC number | 0.5899 | 0.4959 | 0.2026 | yes | N/A |
| O93277 | WDR1_CHICK | No assigned EC number | 0.5683 | 0.4959 | 0.2019 | yes | N/A |
| Q2KJH4 | WDR1_BOVIN | No assigned EC number | 0.5683 | 0.4959 | 0.2029 | yes | N/A |
| Q5RKI0 | WDR1_RAT | No assigned EC number | 0.6153 | 0.4596 | 0.1881 | yes | N/A |
| O88342 | WDR1_MOUSE | No assigned EC number | 0.6076 | 0.4596 | 0.1881 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 248 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| pfam08662 | 194 | pfam08662, eIF2A, Eukaryotic translation initiatio | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-17
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 27/202 (13%)
Query: 51 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110
H+ V +SP G +A+G G +++WD E + + H GP++D+A
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT--GPVRDVAA 59
Query: 111 SPDNQRMIS----------IVENGAKVSSL-----PIDYEPSSISLDHEHGLVAVGGADS 155
S D + S +E G V +L + SS++ + +++ D
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV----SSVAFSPDGRILSSSSRDK 115
Query: 156 KISI--VENGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL 212
I + VE G +++L +S++ + VA D + +++L + A L
Sbjct: 116 TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGKCVATL 173
Query: 213 -DHLGPVTDCSFSPSNEYLVAS 233
H G V +FSP E L++S
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSS 195
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-14
Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 39/211 (18%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97
++ + ++E T H+ V+ +SP G ++S +++WD +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTT 130
Query: 98 FHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKI 157
+ +A+SPD VA D I
Sbjct: 131 LRGHTDWVNSVAFSPDGT-------------------------------FVASSSQDGTI 159
Query: 158 SI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD- 213
+ + G V++L +S++ + + +D + +++L+ L
Sbjct: 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--LGTLRG 217
Query: 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244
H V +FSP L + + ++ +
Sbjct: 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-12
Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 37/198 (18%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97
++ + ++E H+ VN +SP G ++AS G +++WD + +
Sbjct: 115 KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174
Query: 98 FHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKI 157
H G + +A+SPD ++++S +D I
Sbjct: 175 GHT--GEVNSVAFSPDGEKLLS-------------------------------SSSDGTI 201
Query: 158 SIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH 214
+ + G + +L + +S++ + L+A G D + +++L H
Sbjct: 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-H 260
Query: 215 LGPVTDCSFSPSNEYLVA 232
VT ++SP + L +
Sbjct: 261 TNSVTSLAWSPDGKRLAS 278
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (131), Expect = 8e-09
Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 29/196 (14%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 112
+ HS +V +SP G +ASG G VR+WD + + GP+ +++SP
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338
Query: 113 DNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPID 172
D ++S + + + +L+ +
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV------------------------- 373
Query: 173 YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232
S+S + +V+ G D V +++L+ SL H VT FSP + L +
Sbjct: 374 ---LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN-LDGHTSRVTSLDFSPDGKSLAS 429
Query: 233 SDAHRKVVLYRVPDFE 248
+ + L+ +
Sbjct: 430 GSSDNTIRLWDLKTSL 445
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (116), Expect = 6e-07
Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 23/247 (9%)
Query: 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79
++ G + L + ++ + S + H ++ +SP G + SG
Sbjct: 29 SLLSLGSSESGILLLALLSDSLVSLPD--LSSLLLRGHEDSITSIAFSPDGELLLSGSSD 86
Query: 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAW-SPDNQRMISIVENG---AKVSSLPIDYE 135
G +++WD N E ++K+ + +A SPD ++ + K+ L +
Sbjct: 87 GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146
Query: 136 PSSISLDHEHG------------LVAVGGADSKISI--VENGAKVSSLPIDYEPSSISLD 181
H L + D I + + G +S+L +P S
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206
Query: 182 HEHG--LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239
G L+A G +D + +++L+ L H V SFSP L + + +
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTI 265
Query: 240 VLYRVPD 246
L+ +
Sbjct: 266 RLWDLRS 272
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (112), Expect = 2e-06
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 40/216 (18%)
Query: 26 DPKGKNFLYTNG---NSVIIRNIENPA-ISDIYTEHSCAVNVAKYSPSGFYIASG-DISG 80
P G + L + +V + ++ P + HS +V +SP G +ASG + G
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178
Query: 81 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSIS 140
+++WD + + H P+ +A+SPD +I
Sbjct: 179 TIKLWDLRTGKPLSTLAGHT--DPVSSLAFSPDGGLLI---------------------- 214
Query: 141 LDHEHGLVAVGGADSKISI--VENGAKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKVH 197
A G +D I + + G + S + S +S G L+A G +D +
Sbjct: 215 --------ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266
Query: 198 IYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233
+++L + S + H V +FSP + L +
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 137 SSISLDHEHGLVAVGGADSKISI--VENGAKVSSLPIDYEP-SSISLDHEHGLVAVGGAD 193
+ ++ + L+A G D I + +E G + +L P ++ + +A G +D
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72
Query: 194 SKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ +++L L H V+ +FSP L +S + + ++ V +
Sbjct: 73 KTIRLWDLETGECV--RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 5e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
H+ V +SP G Y+ASG G +++WD
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS---GDISGKVR 83
P GK F G + + I++ N +SP G + G+++G++
Sbjct: 69 PNGKEFAVIYGYMPAKITFFDLKGNVIHSLGEQPRNTIFWSPFGRLVLLAGFGNLAGQIE 128
Query: 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI-------VENGAKV 127
WD NK+ I E D WSPD + ++ V+NG K+
Sbjct: 129 FWDVKNKKKIATAE-ASNA---TDCEWSPDGRYFLTATTSPRLRVDNGFKI 175
|
This is a family of eukaryotic translation initiation factors. Length = 194 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 2e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
H+ V +SP G +ASG G VR+WD
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 248 | |||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0283|consensus | 712 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0643|consensus | 327 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0640|consensus | 430 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0305|consensus | 484 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0319|consensus | 775 | 100.0 | ||
| KOG1446|consensus | 311 | 100.0 | ||
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0294|consensus | 362 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG0973|consensus | 942 | 99.98 | ||
| KOG0313|consensus | 423 | 99.98 | ||
| KOG0310|consensus | 487 | 99.98 | ||
| KOG0292|consensus | 1202 | 99.98 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| KOG0277|consensus | 311 | 99.97 | ||
| KOG0292|consensus | 1202 | 99.97 | ||
| KOG0281|consensus | 499 | 99.97 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0645|consensus | 312 | 99.97 | ||
| KOG0306|consensus | 888 | 99.97 | ||
| KOG0285|consensus | 460 | 99.97 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| KOG1446|consensus | 311 | 99.97 | ||
| KOG0276|consensus | 794 | 99.97 | ||
| KOG0288|consensus | 459 | 99.97 | ||
| KOG0275|consensus | 508 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG0641|consensus | 350 | 99.97 | ||
| KOG1408|consensus | 1080 | 99.97 | ||
| KOG0316|consensus | 307 | 99.97 | ||
| KOG0268|consensus | 433 | 99.97 | ||
| KOG0647|consensus | 347 | 99.97 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0265|consensus | 338 | 99.97 | ||
| KOG0646|consensus | 476 | 99.97 | ||
| KOG0299|consensus | 479 | 99.96 | ||
| KOG0640|consensus | 430 | 99.96 | ||
| KOG0313|consensus | 423 | 99.96 | ||
| KOG0278|consensus | 334 | 99.96 | ||
| KOG0277|consensus | 311 | 99.96 | ||
| KOG0772|consensus | 641 | 99.96 | ||
| KOG0772|consensus | 641 | 99.96 | ||
| KOG0973|consensus | 942 | 99.96 | ||
| KOG0264|consensus | 422 | 99.96 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG1332|consensus | 299 | 99.96 | ||
| KOG0289|consensus | 506 | 99.96 | ||
| KOG0274|consensus | 537 | 99.96 | ||
| KOG0282|consensus | 503 | 99.96 | ||
| KOG1407|consensus | 313 | 99.96 | ||
| KOG0269|consensus | 839 | 99.96 | ||
| KOG1274|consensus | 933 | 99.96 | ||
| KOG0641|consensus | 350 | 99.96 | ||
| KOG2096|consensus | 420 | 99.96 | ||
| KOG1273|consensus | 405 | 99.96 | ||
| KOG0308|consensus | 735 | 99.96 | ||
| KOG0305|consensus | 484 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0299|consensus | 479 | 99.95 | ||
| KOG0274|consensus | 537 | 99.95 | ||
| KOG1036|consensus | 323 | 99.95 | ||
| KOG0647|consensus | 347 | 99.95 | ||
| KOG2445|consensus | 361 | 99.95 | ||
| KOG2055|consensus | 514 | 99.95 | ||
| KOG0639|consensus | 705 | 99.95 | ||
| KOG0283|consensus | 712 | 99.95 | ||
| KOG0293|consensus | 519 | 99.95 | ||
| KOG1539|consensus | 910 | 99.94 | ||
| KOG0643|consensus | 327 | 99.94 | ||
| KOG1036|consensus | 323 | 99.94 | ||
| KOG0300|consensus | 481 | 99.94 | ||
| KOG4283|consensus | 397 | 99.94 | ||
| KOG0639|consensus | 705 | 99.94 | ||
| KOG0268|consensus | 433 | 99.94 | ||
| KOG2106|consensus | 626 | 99.93 | ||
| KOG2048|consensus | 691 | 99.93 | ||
| KOG1408|consensus | 1080 | 99.93 | ||
| KOG0321|consensus | 720 | 99.93 | ||
| KOG0300|consensus | 481 | 99.93 | ||
| KOG2096|consensus | 420 | 99.93 | ||
| KOG1063|consensus | 764 | 99.93 | ||
| KOG0267|consensus | 825 | 99.93 | ||
| KOG4328|consensus | 498 | 99.93 | ||
| KOG1538|consensus | 1081 | 99.93 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG0269|consensus | 839 | 99.93 | ||
| KOG0302|consensus | 440 | 99.92 | ||
| KOG1034|consensus | 385 | 99.92 | ||
| KOG0294|consensus | 362 | 99.92 | ||
| KOG2048|consensus | 691 | 99.92 | ||
| KOG0301|consensus | 745 | 99.92 | ||
| KOG1332|consensus | 299 | 99.92 | ||
| KOG2919|consensus | 406 | 99.92 | ||
| KOG1539|consensus | 910 | 99.92 | ||
| KOG0264|consensus | 422 | 99.91 | ||
| KOG0771|consensus | 398 | 99.91 | ||
| KOG0270|consensus | 463 | 99.91 | ||
| KOG0301|consensus | 745 | 99.91 | ||
| KOG1274|consensus | 933 | 99.91 | ||
| KOG0288|consensus | 459 | 99.91 | ||
| KOG0308|consensus | 735 | 99.9 | ||
| KOG0267|consensus | 825 | 99.9 | ||
| KOG2055|consensus | 514 | 99.9 | ||
| KOG0650|consensus | 733 | 99.9 | ||
| KOG1445|consensus | 1012 | 99.89 | ||
| KOG4378|consensus | 673 | 99.89 | ||
| KOG1009|consensus | 434 | 99.89 | ||
| KOG4378|consensus | 673 | 99.89 | ||
| KOG0307|consensus | 1049 | 99.89 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.89 | |
| KOG0321|consensus | 720 | 99.88 | ||
| KOG0642|consensus | 577 | 99.88 | ||
| KOG4328|consensus | 498 | 99.88 | ||
| KOG0646|consensus | 476 | 99.88 | ||
| KOG0302|consensus | 440 | 99.88 | ||
| KOG1524|consensus | 737 | 99.88 | ||
| KOG4283|consensus | 397 | 99.87 | ||
| KOG1188|consensus | 376 | 99.87 | ||
| KOG1273|consensus | 405 | 99.87 | ||
| KOG2106|consensus | 626 | 99.87 | ||
| KOG1523|consensus | 361 | 99.87 | ||
| KOG0322|consensus | 323 | 99.87 | ||
| KOG2445|consensus | 361 | 99.86 | ||
| KOG0303|consensus | 472 | 99.86 | ||
| KOG1007|consensus | 370 | 99.86 | ||
| KOG2919|consensus | 406 | 99.86 | ||
| KOG1063|consensus | 764 | 99.85 | ||
| KOG1963|consensus | 792 | 99.85 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| KOG0307|consensus | 1049 | 99.85 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.85 | |
| KOG1587|consensus | 555 | 99.85 | ||
| KOG2110|consensus | 391 | 99.84 | ||
| KOG2111|consensus | 346 | 99.84 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.84 | |
| KOG0290|consensus | 364 | 99.84 | ||
| KOG1007|consensus | 370 | 99.83 | ||
| KOG0303|consensus | 472 | 99.82 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0650|consensus | 733 | 99.82 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| KOG0270|consensus | 463 | 99.82 | ||
| KOG1009|consensus | 434 | 99.82 | ||
| KOG4227|consensus | 609 | 99.81 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.81 | |
| KOG0644|consensus | 1113 | 99.8 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.8 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.8 | |
| KOG2394|consensus | 636 | 99.8 | ||
| KOG1963|consensus | 792 | 99.79 | ||
| KOG1523|consensus | 361 | 99.79 | ||
| KOG1310|consensus | 758 | 99.79 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.79 | |
| KOG1445|consensus | 1012 | 99.79 | ||
| KOG4497|consensus | 447 | 99.79 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.78 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG0290|consensus | 364 | 99.78 | ||
| KOG1034|consensus | 385 | 99.78 | ||
| KOG1272|consensus | 545 | 99.77 | ||
| KOG4497|consensus | 447 | 99.77 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.77 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG1587|consensus | 555 | 99.75 | ||
| KOG2110|consensus | 391 | 99.75 | ||
| KOG1524|consensus | 737 | 99.75 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.75 | |
| KOG0649|consensus | 325 | 99.74 | ||
| KOG2315|consensus | 566 | 99.74 | ||
| KOG0642|consensus | 577 | 99.74 | ||
| KOG2139|consensus | 445 | 99.74 | ||
| KOG1334|consensus | 559 | 99.72 | ||
| KOG1538|consensus | 1081 | 99.72 | ||
| KOG1272|consensus | 545 | 99.72 | ||
| KOG1517|consensus | 1387 | 99.71 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.7 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1240|consensus | 1431 | 99.7 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.7 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG2321|consensus | 703 | 99.69 | ||
| KOG0649|consensus | 325 | 99.69 | ||
| KOG0771|consensus | 398 | 99.68 | ||
| KOG3881|consensus | 412 | 99.68 | ||
| KOG2139|consensus | 445 | 99.68 | ||
| KOG1240|consensus | 1431 | 99.68 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.67 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1188|consensus | 376 | 99.67 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.67 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2394|consensus | 636 | 99.65 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.64 | |
| KOG2314|consensus | 698 | 99.64 | ||
| KOG1354|consensus | 433 | 99.63 | ||
| KOG0322|consensus | 323 | 99.63 | ||
| KOG2321|consensus | 703 | 99.62 | ||
| KOG4227|consensus | 609 | 99.61 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2111|consensus | 346 | 99.61 | ||
| KOG1310|consensus | 758 | 99.61 | ||
| KOG1517|consensus | 1387 | 99.6 | ||
| KOG0644|consensus | 1113 | 99.58 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.58 | |
| KOG4547|consensus | 541 | 99.56 | ||
| KOG2041|consensus | 1189 | 99.55 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.55 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.54 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.53 | |
| KOG1409|consensus | 404 | 99.51 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.51 | |
| KOG3881|consensus | 412 | 99.51 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.51 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.49 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.47 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.45 | |
| KOG1354|consensus | 433 | 99.45 | ||
| KOG1064|consensus | 2439 | 99.45 | ||
| KOG0280|consensus | 339 | 99.43 | ||
| KOG0974|consensus | 967 | 99.41 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.41 | |
| KOG3914|consensus | 390 | 99.41 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.41 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.41 | |
| KOG0974|consensus | 967 | 99.38 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.35 | |
| KOG1409|consensus | 404 | 99.34 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.32 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.3 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.29 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.28 | |
| KOG2315|consensus | 566 | 99.28 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.28 | |
| KOG4190|consensus | 1034 | 99.27 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.26 | |
| KOG1912|consensus | 1062 | 99.25 | ||
| KOG3617|consensus | 1416 | 99.24 | ||
| KOG4532|consensus | 344 | 99.23 | ||
| KOG1334|consensus | 559 | 99.22 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.22 | |
| KOG4714|consensus | 319 | 99.18 | ||
| KOG2041|consensus | 1189 | 99.17 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.14 | |
| KOG4547|consensus | 541 | 99.13 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.13 | |
| KOG0280|consensus | 339 | 99.12 | ||
| KOG0309|consensus | 1081 | 99.12 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.11 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.1 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.1 | |
| KOG1920|consensus | 1265 | 99.08 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 99.07 | |
| KOG1275|consensus | 1118 | 99.05 | ||
| KOG4532|consensus | 344 | 99.04 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.02 | |
| KOG1645|consensus | 463 | 99.01 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 99.01 | |
| KOG1832|consensus | 1516 | 99.0 | ||
| KOG3914|consensus | 390 | 99.0 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.98 | |
| KOG1064|consensus | 2439 | 98.95 | ||
| KOG1920|consensus | 1265 | 98.95 | ||
| KOG1912|consensus | 1062 | 98.93 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.91 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.89 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.89 | |
| KOG2066|consensus | 846 | 98.88 | ||
| KOG4190|consensus | 1034 | 98.86 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.85 | |
| KOG2314|consensus | 698 | 98.85 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.85 | |
| KOG2066|consensus | 846 | 98.84 | ||
| KOG4714|consensus | 319 | 98.84 | ||
| KOG1832|consensus | 1516 | 98.83 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.83 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.82 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.79 | |
| KOG0882|consensus | 558 | 98.78 | ||
| KOG2695|consensus | 425 | 98.78 | ||
| KOG0309|consensus | 1081 | 98.78 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.78 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.78 | |
| KOG2114|consensus | 933 | 98.78 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.73 | |
| KOG2695|consensus | 425 | 98.7 | ||
| KOG0882|consensus | 558 | 98.69 | ||
| KOG1275|consensus | 1118 | 98.69 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.69 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.63 | |
| KOG4649|consensus | 354 | 98.61 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.58 | |
| KOG3621|consensus | 726 | 98.58 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.55 | |
| KOG3617|consensus | 1416 | 98.54 | ||
| KOG1008|consensus | 783 | 98.53 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.52 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.45 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.43 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.39 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.39 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.38 | |
| KOG4640|consensus | 665 | 98.38 | ||
| KOG3621|consensus | 726 | 98.35 | ||
| KOG1645|consensus | 463 | 98.33 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.33 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.32 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 98.29 | |
| KOG4640|consensus | 665 | 98.28 | ||
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.27 | |
| KOG1008|consensus | 783 | 98.25 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.25 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.24 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.24 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.23 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.22 | |
| KOG2114|consensus | 933 | 98.11 | ||
| KOG2395|consensus | 644 | 98.1 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.1 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.06 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.03 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.0 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.99 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.99 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.94 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.86 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.84 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.82 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.82 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.81 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.79 | |
| PRK10115 | 686 | protease 2; Provisional | 97.76 | |
| KOG2395|consensus | 644 | 97.73 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.69 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.68 | |
| KOG2444|consensus | 238 | 97.68 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.67 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.66 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.64 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.61 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.59 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.58 | |
| KOG2079|consensus | 1206 | 97.57 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.54 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.5 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.43 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.42 | |
| KOG4649|consensus | 354 | 97.41 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| KOG2079|consensus | 1206 | 97.32 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.18 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.18 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.16 | |
| KOG2280|consensus | 829 | 97.15 | ||
| KOG4441|consensus | 571 | 97.06 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 97.01 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.98 | |
| KOG4499|consensus | 310 | 96.97 | ||
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.91 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 96.77 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 96.77 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.77 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.73 | |
| KOG1897|consensus | 1096 | 96.65 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.61 | |
| KOG2377|consensus | 657 | 96.59 | ||
| KOG3630|consensus | 1405 | 96.59 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.5 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.38 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 96.37 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.36 | |
| KOG4441|consensus | 571 | 96.27 | ||
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.27 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.26 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.24 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.24 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 96.01 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.0 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.85 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 95.83 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.8 | |
| KOG1916|consensus | 1283 | 95.73 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.72 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 95.69 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.67 | |
| KOG4499|consensus | 310 | 95.66 | ||
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.62 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 95.6 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.58 | |
| KOG2444|consensus | 238 | 95.55 | ||
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.55 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.54 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.34 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.3 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.23 | |
| KOG2377|consensus | 657 | 95.2 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 95.13 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.91 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.85 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.59 | |
| KOG1916|consensus | 1283 | 94.57 | ||
| PRK10115 | 686 | protease 2; Provisional | 94.48 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.42 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.32 | |
| KOG1900|consensus | 1311 | 94.15 | ||
| KOG4460|consensus | 741 | 94.06 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.06 | |
| KOG2247|consensus | 615 | 94.06 | ||
| KOG2280|consensus | 829 | 93.89 | ||
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 93.87 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 93.87 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.75 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.73 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 93.73 | |
| KOG3630|consensus | 1405 | 93.67 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 93.66 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.63 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.61 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 93.57 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.43 | |
| KOG1898|consensus | 1205 | 93.42 | ||
| KOG4460|consensus | 741 | 93.37 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.13 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 93.1 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 92.76 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.61 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.54 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 92.43 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.33 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.32 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.11 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.09 | |
| KOG1897|consensus | 1096 | 91.93 | ||
| KOG1900|consensus | 1311 | 91.32 | ||
| KOG2247|consensus | 615 | 91.21 | ||
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.14 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 91.14 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 90.92 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.91 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 90.41 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 90.22 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.18 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 89.72 | |
| KOG1983|consensus | 993 | 89.52 | ||
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 89.39 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.94 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 88.45 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.94 | |
| KOG1898|consensus | 1205 | 87.31 | ||
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.17 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 86.29 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 86.28 | |
| KOG4659|consensus | 1899 | 86.06 | ||
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 85.99 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 85.88 | |
| KOG1896|consensus | 1366 | 85.76 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=267.75 Aligned_cols=236 Identities=16% Similarity=0.271 Sum_probs=194.3
Q ss_pred ccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 10 ATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
.++ .+|.++|.|++|+|+|..|++|+ |.++++||+.+..+..+.++|..-|.|++|+|||+.||+|+.||+|++||.+
T Consensus 109 sS~-~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSI-AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccc-CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 344 35999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEec-----CCCEEEEEeCCc-EEEEEccCC----------CCCceeEeC----------
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSP-----DNQRMISIVENG-AKVSSLPID----------YEPSSISLD---------- 142 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~-~~i~~~~~~----------~~~~~~~~~---------- 142 (248)
+++.+ -..+.+|...|++++|.| ..++|++++.|+ ++||++... ..++++.|-
T Consensus 188 tg~~~-g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~ 266 (480)
T KOG0271|consen 188 TGQQI-GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQ 266 (480)
T ss_pred CCCcc-cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCC
Confidence 98864 367889999999999976 467899988776 599997421 122222222
Q ss_pred ------------------------------------------CCC-------------------------CEEEEEcCCC
Q psy16005 143 ------------------------------------------HEH-------------------------GLVAVGGADS 155 (248)
Q Consensus 143 ------------------------------------------~~~-------------------------~~~~~~~~~~ 155 (248)
|.+ +.+++|+.|.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 212 2366666666
Q ss_pred eEEEEECCc---eeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 156 KISIVENGA---KVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 156 ~i~~~~~~~---~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
++.+|+..+ ++..+ .|...++.+.||||++++|+++.|.+|++||.++++.+..+. +|-+.|..++|+.|.++|+
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh-hccceeEEEEeccCccEEE
Confidence 666666222 22222 244557899999999999999999999999999999987776 8999999999999999999
Q ss_pred EEcCCCeEEEEECCCCC
Q psy16005 232 ASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~~ 248 (248)
+++.|.++++|++++.+
T Consensus 426 S~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 426 SGSKDSTLKVWDVRTKK 442 (480)
T ss_pred EcCCCceEEEEEeeeee
Confidence 99999999999998753
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=257.22 Aligned_cols=230 Identities=16% Similarity=0.243 Sum_probs=209.6
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcC--CcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
+..+++..+.||+|++.|++|+ +|.+++|+..+.+.+.++.+|...+.++.|+|. +..+|||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 4668999999999999999998 999999999999999999999999999999995 6789999999999999999877
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
.+ ..+.+|...|..++|+|+|++|++++-|.. ++||+.. ...+.+++|.++|.++++|+.|..-++|
T Consensus 253 ~l--~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 253 PL--QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred ch--hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 44 788899999999999999999999998887 9999864 4568899999999999999999999999
Q ss_pred E--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC-CCcEEEEEcCC
Q psy16005 161 E--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP-SNEYLVASDAH 236 (248)
Q Consensus 161 ~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 236 (248)
| ++.++..+. |..+|..++|+|+|-.||+|+.|++++|||++..+....+. +|.+-|+.|+|+| .|.+|++++.|
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccC
Confidence 9 666766665 55678999999999999999999999999999988866554 8999999999999 68899999999
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
+++++|.-.++
T Consensus 410 ~t~kiWs~~~~ 420 (459)
T KOG0272|consen 410 NTVKIWSTRTW 420 (459)
T ss_pred cceeeecCCCc
Confidence 99999988765
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=257.97 Aligned_cols=227 Identities=18% Similarity=0.227 Sum_probs=206.7
Q ss_pred ccccCCcEEEEeCCC--CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 14 RTQRGQPIVLGGDPK--GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~--~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.+|.+.+.++.|+|. +..+++++ ||++++|++++..++..+.+|...|..++|+|+|++|+|++.|.+-++||++++
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 469999999999997 56889987 999999999998999999999999999999999999999999999999999999
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
..+ ....+|...|.+++|.+||..+++++-|.. ++||++.. .++..++|+|+|..+|+|+.|+++++
T Consensus 294 ~El--L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kV 371 (459)
T KOG0272|consen 294 SEL--LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKV 371 (459)
T ss_pred hhh--HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEE
Confidence 865 566799999999999999999999998887 99999754 56789999999999999999999999
Q ss_pred EE--CCceeeeecc-cCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 160 VE--NGAKVSSLPI-DYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 160 ~~--~~~~~~~~~~-~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
|| ....+..++. ..-|..+.|+| .|.+|++++.|++++||..++..+...+. +|.+.|.++.++||++++++++.
T Consensus 372 WDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 372 WDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred eeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEecc
Confidence 99 4455666664 45578999999 77899999999999999999999887766 99999999999999999999999
Q ss_pred CCeEEEEE
Q psy16005 236 HRKVVLYR 243 (248)
Q Consensus 236 d~~i~vw~ 243 (248)
|+++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=259.57 Aligned_cols=226 Identities=18% Similarity=0.255 Sum_probs=202.5
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc-------------------------------eeeeeecCCcceEEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA-------------------------------ISDIYTEHSCAVNVAK 65 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-------------------------------~~~~~~~~~~~v~~~~ 65 (248)
..++|..|++|+..+|.|- |..|++|.+...+ ..+.+.+|.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 4588999999999888885 9999999887311 2234679999999999
Q ss_pred ECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC----------C
Q psy16005 66 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID----------Y 134 (248)
Q Consensus 66 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~----------~ 134 (248)
|+|+.++|+++|.|+++|+|.+.+...+ ....+|..+|..+.|+|-|-++++++.|++ ++|..... .
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~--V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls 536 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCL--VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS 536 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeE--EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc
Confidence 9999999999999999999999998865 566699999999999999999999999887 99997643 3
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
.+.++.|+|+.+++++|+.|.++++|| +|..++.+. |..++.+++|||+|++|++|+.||.|.+||+.+++.+..+.
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 467899999999999999999999999 778888776 56678999999999999999999999999999999887766
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+|.+.|.++.||.||..||+++.|+.|++||+..
T Consensus 617 -~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 617 -GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred -cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 8999999999999999999999999999999864
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=224.28 Aligned_cols=237 Identities=17% Similarity=0.236 Sum_probs=200.2
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
++.+++ +..++|+.+...|+++.||+++...|++||+.+++ ++..+.+|...|+++.|..+|+++++|++||+++||
T Consensus 32 C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIW 110 (311)
T KOG0315|consen 32 CSRTIQ-HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIW 110 (311)
T ss_pred EEEEEe-cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEE
Confidence 444554 36689999999999999999999999999998765 577899999999999999999999999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCCCCCEEEEEcC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-----------YEPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 153 (248)
|++.... .....|..+|+++..+|+...|+++..+| +++||+..+ ..+.++...|+|..++.+..
T Consensus 111 dlR~~~~---qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 111 DLRSLSC---QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN 187 (311)
T ss_pred eccCccc---chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence 9998543 23334679999999999999999998776 699998643 45788999999999999999
Q ss_pred CCeEEEEEC-C-c------eeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEc
Q psy16005 154 DSKISIVEN-G-A------KVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFS 224 (248)
Q Consensus 154 ~~~i~~~~~-~-~------~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s 224 (248)
.|..++|+. + . ++..++ +...+..+.+|||+++|++++.|.+++||+.++.-.......+|...+..++||
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 999999992 1 1 122222 445578889999999999999999999999998722233334799999999999
Q ss_pred CCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 225 PSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 225 ~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.||+||++++.|+.+++|+++.+|
T Consensus 268 ~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 268 ADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred cCccEEEecCCCCceeecccccCc
Confidence 999999999999999999998875
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=239.81 Aligned_cols=226 Identities=16% Similarity=0.261 Sum_probs=199.2
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee-eeeecCCcceEEEEECc-----CCcEEEEEccCCeEEEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSP-----SGFYIASGDISGKVRIWD 86 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iwd 86 (248)
.+|...|.|++|+|||+.||+|+ +|.|++||..+++++ +.+.+|...|++++|.| ..++||+++.||.|+|||
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 45899999999999999999998 999999999888765 57889999999999977 568999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------------------------------
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP---------------------------------- 131 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~---------------------------------- 131 (248)
+..+..+ ..+.+|..+|+|+.|--+| ++++++.|+ +++|+..
T Consensus 234 ~~~~~~~--~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 234 TKLGTCV--RTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred ccCceEE--EEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 9988854 7788999999999997543 778888776 4888740
Q ss_pred -------------------------------------------------------CCCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 132 -------------------------------------------------------IDYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 132 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
+...+..+.|+||++++|+++-|+.
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 1123567899999999999999999
Q ss_pred EEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 157 ISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 157 i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
|++|+ +|+.+..+. |-..+..++|+.|.++|++|+.|.++++||+++.+....+. +|...|.++.|+|||+.+++|
T Consensus 391 VkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred eeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeecC
Confidence 99999 888888888 55668899999999999999999999999999999866554 899999999999999999999
Q ss_pred cCCCeEEEEE
Q psy16005 234 DAHRKVVLYR 243 (248)
Q Consensus 234 ~~d~~i~vw~ 243 (248)
+.|..+++|.
T Consensus 470 gkdkv~~lw~ 479 (480)
T KOG0271|consen 470 GKDKVLRLWR 479 (480)
T ss_pred CCceEEEeec
Confidence 9999999995
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=224.44 Aligned_cols=234 Identities=15% Similarity=0.200 Sum_probs=198.6
Q ss_pred ccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 10 ATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
..+. +|...|..+..++||++.++++ |+.+++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|++|++.
T Consensus 57 r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 57 RRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eeee-ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 3443 4888899999999999999998 9999999999999999999999999999999999999999999999999997
Q ss_pred CCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCcE-EEEEccC----------CCCCceeEeCCCCCEEEEEcCCC
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENGA-KVSSLPI----------DYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
..... ...-..+.+.|.++.|+|+ ..++++++.|+. ++|+++. ...++.+.++|||.+.++|+.||
T Consensus 136 g~ck~-t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 136 GVCKY-TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred ccEEE-EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 65432 2222233789999999997 678999998885 9999863 45678899999999999999999
Q ss_pred eEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC--------CcCeEEEEEcC
Q psy16005 156 KISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH--------LGPVTDCSFSP 225 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--------~~~v~~~~~s~ 225 (248)
.+.+|| .++.+..+.+...+.+++|+|+.-+|+.+. +..|+|||+.++..+..+.... .....+++|++
T Consensus 215 ~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred eEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 999999 667788888889999999999987776665 4459999999988765544321 22356789999
Q ss_pred CCcEEEEEcCCCeEEEEECCC
Q psy16005 226 SNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 226 ~~~~l~~~~~d~~i~vw~~~~ 246 (248)
||+.|+++-.|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 999999999999999999864
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=217.81 Aligned_cols=230 Identities=16% Similarity=0.223 Sum_probs=195.4
Q ss_pred cccccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCC-----CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 13 PRTQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIEN-----PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
-.+|.+.|..++..+.+. .++.++ |..+.+|++.. |.+++.+.+|...|..+..++||++.++++.|+++++|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 356999999999999865 455555 99999998754 66788999999999999999999999999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------C-CCCCceeEeCCC--CCEEEEE
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP----------I-DYEPSSISLDHE--HGLVAVG 151 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~----------~-~~~~~~~~~~~~--~~~~~~~ 151 (248)
|+.+++ ....+.+|...|.+++|++|.+.+++++.|.. ++|+.. . ...+.++.|+|+ ..+++++
T Consensus 91 Dl~~g~--~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 91 DLATGE--STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred EecCCc--EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 999997 44788999999999999999999999998875 899863 1 456889999998 6799999
Q ss_pred cCCCeEEEEECCce--eeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 152 GADSKISIVENGAK--VSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 152 ~~~~~i~~~~~~~~--~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
+.|+++++||...+ ...+ .+...++.+++||||...++|+.||.+.+||++.++....+ +|...|.+++|+|+..
T Consensus 169 s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnry 246 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRY 246 (315)
T ss_pred cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCce
Confidence 99999999994433 2233 24556899999999999999999999999999999885444 6889999999999876
Q ss_pred EEEEEcCCCeEEEEECCCC
Q psy16005 229 YLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 229 ~l~~~~~d~~i~vw~~~~~ 247 (248)
.|+.+ .+..|+|||++++
T Consensus 247 wL~~a-t~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 247 WLCAA-TATSIKIWDLESK 264 (315)
T ss_pred eEeec-cCCceEEEeccch
Confidence 66555 4556999999875
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=231.59 Aligned_cols=234 Identities=19% Similarity=0.313 Sum_probs=201.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee---cCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT---EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
+.|..-|.|+.|+|||+++++++ ||++++||=.+++.+..+. +|++.|.+++|+||++.++|++.|.+++|||+.+
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 45777899999999999999986 9999999999999999887 8999999999999999999999999999999976
Q ss_pred Cceeee-----------------------------------------eeccCCCCCeeEEEEecCCCEEEEEeCCcE-EE
Q psy16005 90 KEHILK-----------------------------------------NEFHPIGGPIKDIAWSPDNQRMISIVENGA-KV 127 (248)
Q Consensus 90 ~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i 127 (248)
.+.+.. ..+.+|...|++++.+||+++|++++.+|. .-
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 652211 234579999999999999999999998875 55
Q ss_pred EEc-----------------------------------------------------------------------------
Q psy16005 128 SSL----------------------------------------------------------------------------- 130 (248)
Q Consensus 128 ~~~----------------------------------------------------------------------------- 130 (248)
|+.
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 654
Q ss_pred --------------cCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CC----ceeeeecccCCCceEEEcCCCCEEEEEc
Q psy16005 131 --------------PIDYEPSSISLDHEHGLVAVGGADSKISIVE-NG----AKVSSLPIDYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 131 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 191 (248)
+....+.+++++|++..+++|++|+.+++|. .+ +....+++..+++++++|||+.+||++.
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 0123456788999999999999999999998 22 2335567889999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..+.+.+||+.+.+.......-|.+.|.+++|+|+.+++|+|+-|-.|.||+++.+
T Consensus 507 a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 507 ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 99999999999988754444349999999999999999999999999999999764
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=212.61 Aligned_cols=223 Identities=13% Similarity=0.177 Sum_probs=197.8
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC------ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP------AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
...|..++|+|.|+++|+|+ |+...||++.+. +..+.+.+|.+.+.|+.|-+| ..|+|+|.|.+..+||+++
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET 175 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc
Confidence 46789999999999999998 999999999864 345678899999999999885 5699999999999999999
Q ss_pred CceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCcE-EEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENGA-KVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
++.+ ..+.+|.+.|.++.++| +++.+++++-|+. ++|+++. +..+..+.|.|+|.-+++|+.|++.
T Consensus 176 g~~~--~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 176 GQQT--QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred ceEE--EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence 9955 78889999999999999 9999999987775 9999874 4567899999999999999999999
Q ss_pred EEEEC--Cceeeeecc---cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 158 SIVEN--GAKVSSLPI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 158 ~~~~~--~~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
++||. .+.+..+.+ ..++++++||..|++|++|..|..+.+||.-.++....+. +|++.|+++..+|||.-+++
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVAT 332 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEe
Confidence 99993 446666654 3457999999999999999999999999998888766555 89999999999999999999
Q ss_pred EcCCCeEEEEE
Q psy16005 233 SDAHRKVVLYR 243 (248)
Q Consensus 233 ~~~d~~i~vw~ 243 (248)
|+.|..++||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=227.02 Aligned_cols=228 Identities=19% Similarity=0.279 Sum_probs=192.8
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
...|++++|+.+|..||+|+ +|.+++|+ .+|.++..+..|+++|.++.|+.+|.+|++++.|+++.+||..+++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~-- 311 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK-- 311 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE--
Confidence 35799999999999999998 99999999 457888889999999999999999999999999999999999998855
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENGA- 164 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 164 (248)
..+..|..+-..+.|-.+..+..+..+..+.++.+. +...+..+.|+|.+.+|++++.|+++++|..++
T Consensus 312 q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 556667777788899865544444444446887764 456678999999999999999999999999443
Q ss_pred -eeeeec-ccCCCceEEEcCCC---------CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 165 -KVSSLP-IDYEPSSISLDHEH---------GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 165 -~~~~~~-~~~~~~~~~~s~~~---------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
....+. +...+..+.|+|+| ..+++++.|++|++||+..+.++..+. .|..+|.+++|+|+|+++|+|
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCcEEEec
Confidence 333333 45567778888754 478999999999999999999987766 799999999999999999999
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
+.||.|.+|+.++++
T Consensus 471 s~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGK 485 (524)
T ss_pred CCCCeeEeccccchh
Confidence 999999999998874
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=224.68 Aligned_cols=248 Identities=43% Similarity=0.657 Sum_probs=219.6
Q ss_pred CC-cCcceecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 1 MS-YSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 1 m~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
|+ ++++++++.+|...++...-+.-.|.|+.++++.++.+.+.++++......+..|..+++-..|||.|.++|+|...
T Consensus 1 ms~~~lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~s 80 (603)
T KOG0318|consen 1 MSEYELKETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVS 80 (603)
T ss_pred CchhhhhhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCc
Confidence 77 78889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-----EEEEc------------------------
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-----KVSSL------------------------ 130 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-----~i~~~------------------------ 130 (248)
|+|+|||....+.+.+.+++...++|..++|+.|++++++.+++.- .+|+-
T Consensus 81 G~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 81 GKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP 160 (603)
T ss_pred CcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc
Confidence 9999999988787888888888999999999999999999987653 34542
Q ss_pred ---------------------------cCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec----ccCCCce
Q psy16005 131 ---------------------------PIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP----IDYEPSS 177 (248)
Q Consensus 131 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~----~~~~~~~ 177 (248)
.+..-+.++.++|||..+++.+.||++.+|| +++.+..+. +...+.+
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 0123357889999999999999999999999 788887775 6777999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC------------------------------------------cccccCC
Q psy16005 178 ISLDHEHGLVAVGGADSKVHIYELNNKSLSP------------------------------------------KAELDHL 215 (248)
Q Consensus 178 ~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~------------------------------------------~~~~~~~ 215 (248)
++|+||+..+++++.|.+++|||+.+.+++. ....+|.
T Consensus 241 lsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred EEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 9999999999999999999999998764322 1223789
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..|+++..+||+++|++++.||.|.-|+..+|+
T Consensus 321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred cceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 999999999999999999999999999998763
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=209.23 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=203.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC--
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-- 90 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-- 90 (248)
.+|.+.|.++.|++|.+++++++ ||.+.|||.-+...++.++.....|..++|+|.|+++|.|+-|....||++.+.
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 56999999999999999999998 999999999998888888888889999999999999999999999999999854
Q ss_pred c--eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------CCCceeEeCC-CCCEEEEEcCCCeE
Q psy16005 91 E--HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------YEPSSISLDH-EHGLVAVGGADSKI 157 (248)
Q Consensus 91 ~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~i 157 (248)
+ ......+.+|.+.+.+..|.+|++.|-..++....+|+++.. ..+.+++++| +++.+++|+-|+..
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence 2 234567899999999999998665555555555699998743 4567888999 99999999999999
Q ss_pred EEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCcEEEEE
Q psy16005 158 SIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 158 ~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~ 233 (248)
++|| .+...+.++ +...++++.|.|+|.-+++|+.|++.++||++..+.+..+... -..+|++++||..|++|++|
T Consensus 212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred eeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 9999 566677776 6778999999999999999999999999999998876655432 35689999999999999999
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
..|.++.+||.-.+|
T Consensus 292 y~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGE 306 (343)
T ss_pred ecCCceeEeeccccc
Confidence 999999999986543
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=202.09 Aligned_cols=232 Identities=17% Similarity=0.236 Sum_probs=191.9
Q ss_pred ccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCc---eeeee-ecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 14 RTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPA---ISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~---~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
.+|.+++..++|+|- |..||+++ |+.|++|+...+. +...+ .+|+..|.+++|+|.|++|+++|.|.++.||.-
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 458889999999998 89999987 9999999987432 22222 279999999999999999999999999999998
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC-------------CCCCceeEeCCCCCEEEEEcC
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI-------------DYEPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~-------------~~~~~~~~~~~~~~~~~~~~~ 153 (248)
..++......+.+|...|.+++|+++|++|+++++++. .+|.... ...+..+.|+|...+|++++.
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEecc
Confidence 88887778899999999999999999999999998874 8888752 345678899999999999999
Q ss_pred CCeEEEEECC-----ceeeeecc-cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC-------CC--------------
Q psy16005 154 DSKISIVENG-----AKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNK-------SL-------------- 206 (248)
Q Consensus 154 ~~~i~~~~~~-----~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~-------~~-------------- 206 (248)
|.+|++|+.. ...+++.. ...+.+++|+|.|..|++++.|++++||-..+. +.
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~g 250 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGG 250 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEecc
Confidence 9999999832 24555653 447899999999999999999999999973221 00
Q ss_pred ---------------------CCcccccCCcCeEEEEEcCC-CcEEEEEcCCCeEEEEECC
Q psy16005 207 ---------------------SPKAELDHLGPVTDCSFSPS-NEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 207 ---------------------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~ 245 (248)
.......|...|++++|.|. ...|++++.||.+++|.+.
T Consensus 251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 00111247889999999995 6789999999999999875
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=229.09 Aligned_cols=233 Identities=17% Similarity=0.246 Sum_probs=201.6
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...++++++||||+++++|+ ||.|+|||...+-+..++..|++.|+.+.|+..++.+++++-||+|+.||+...+.
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 46889999999999999999997 99999999999999999999999999999999999999999999999999998776
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
...+..+ ......+++.+|.|..+.+++.+. +.+|.++ +++++.+++|+|.+..|++++.|++|++|
T Consensus 427 fRTft~P-~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 427 FRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeecCC-CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 5434333 234667899999999999999887 4888876 45788899999999999999999999999
Q ss_pred E---CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc----------------c---ccCCcCe
Q psy16005 161 E---NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA----------------E---LDHLGPV 218 (248)
Q Consensus 161 ~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~----------------~---~~~~~~v 218 (248)
| ......++++...+..++|+|+|+.|++++-||.|.+||.+.+...... . .......
T Consensus 506 ~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F 585 (893)
T KOG0291|consen 506 DIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF 585 (893)
T ss_pred EeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence 9 4447788888999999999999999999999999999999765432111 0 0123578
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 219 TDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+.+++|+||.++++|+..+.|++|++.++
T Consensus 586 tti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 586 TTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 99999999999999999999999999864
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=221.56 Aligned_cols=228 Identities=18% Similarity=0.360 Sum_probs=197.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
...+..|..+.|.|+|+.|++|+ .|.+.+|+..+......++.|..+|.++.|++++.++++|+.+|.|++|+..-...
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 34567899999999999999997 89999999877666667789999999999999999999999999999999876542
Q ss_pred eeeeeccC-CCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 93 ILKNEFHP-IGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 93 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
..+.. |...|++++|+|+...++++++|+. +||+... +..+++++|+|...++++++.|..|++|
T Consensus 173 ---k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 173 ---KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred ---HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence 23344 4589999999999999999998885 9999754 3458899999999999999999999999
Q ss_pred E--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC-cEEEEEcCC
Q psy16005 161 E--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN-EYLVASDAH 236 (248)
Q Consensus 161 ~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d 236 (248)
| ++.++.++. +...|..+.|+|++++|++++.|..+++||+++.+.+.... +|...|+++.|+|-. ..|.+|+.|
T Consensus 250 DprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 250 DPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred cCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCC
Confidence 9 667776665 56678999999999999999999999999999777665555 899999999999965 467788999
Q ss_pred CeEEEEECC
Q psy16005 237 RKVVLYRVP 245 (248)
Q Consensus 237 ~~i~vw~~~ 245 (248)
|.|..|.+.
T Consensus 329 gsvvh~~v~ 337 (464)
T KOG0284|consen 329 GSVVHWVVG 337 (464)
T ss_pred CceEEEecc
Confidence 999999876
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=198.73 Aligned_cols=216 Identities=16% Similarity=0.250 Sum_probs=187.3
Q ss_pred EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEE
Q psy16005 31 NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIA 109 (248)
Q Consensus 31 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 109 (248)
+|++++ |.+|++|...+|.+.++++...+.|+.+...|+++.||+++. ..|++||++++.......+.+|...|..+.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 566776 999999999999999999877889999999999999998875 589999999988777789999999999999
Q ss_pred EecCCCEEEEEeCCcE-EEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceee--ee--cccCCC
Q psy16005 110 WSPDNQRMISIVENGA-KVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVS--SL--PIDYEP 175 (248)
Q Consensus 110 ~~~~~~~l~~~~~~~~-~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~--~~~~~~ 175 (248)
|..+|+.++++++||. +||+++ ...+++++..+|+...|+++.++|.|++||.+.... .+ +....+
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSI 170 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcce
Confidence 9999999999999996 999986 356788999999999999999999999999554322 22 124557
Q ss_pred ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc-----ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 176 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-----AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.++...|||.+++.+...|..++|++-+...... ....|.+.+..+.+|||+++|++++.|.+++||+.++.
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 8999999999999999999999999977543222 12368999999999999999999999999999998764
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=229.23 Aligned_cols=235 Identities=15% Similarity=0.254 Sum_probs=197.9
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
.+...+...+.++.|+|+|+.+++++ ++.+++|+..+.+ ..+.+.+|...|.+++|+|+++++++++.|++|+|||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34444578899999999999999986 9999999997777 67777899999999999999999999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
+.... ....+.+|...|++++|+|+++.+++++.|+ +++|+++. ...+..++++++++++++++.|+.
T Consensus 233 ~~~~~-~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 233 KDDGR-NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred cCCCe-EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 44422 3367789999999999999999999999887 59999874 346788999999999999999999
Q ss_pred EEEEE--CCc--eeeeeccc-C--CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCc---CeEEEEEcCC
Q psy16005 157 ISIVE--NGA--KVSSLPID-Y--EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLG---PVTDCSFSPS 226 (248)
Q Consensus 157 i~~~~--~~~--~~~~~~~~-~--~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~---~v~~~~~s~~ 226 (248)
|++|| .+. ....+... . .+.+++|+|+++++++++.|+.+++||+..++...... +|.. .+.+...++.
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTG 390 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCC
Confidence 99999 333 12333322 2 46899999999999999999999999999988876655 5544 3445566789
Q ss_pred CcEEEEEcCCCeEEEEECCCC
Q psy16005 227 NEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++++++++.|+.|++|++.++
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCeEEEEeCCceEEEEeCCcc
Confidence 999999999999999999875
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=215.20 Aligned_cols=232 Identities=13% Similarity=0.189 Sum_probs=202.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|+.+|+.+-|+|+-..+++++ |.+|++||..+++..+.+++|.+.+.+++|+..|+++++++.|-.+++||..+.. .
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-~ 184 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-R 184 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH-H
Confidence 4888999999999999999986 9999999999999999999999999999999999999999999999999998742 2
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCC----------CCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDY----------EPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
....+.+|...|.++.|-|.|.++++++.|. ++.|++.... .++.+..+.||.++++++.|.++++|-.
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV 264 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence 3356778999999999999999999999776 5999987543 4567788999999999999999999983
Q ss_pred Cc--eeeee-cccCCCceEEEcCC---------------CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEc
Q psy16005 163 GA--KVSSL-PIDYEPSSISLDHE---------------HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFS 224 (248)
Q Consensus 163 ~~--~~~~~-~~~~~~~~~~~s~~---------------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s 224 (248)
+. ....+ .++.++.+++|.|. +.++.+++.|++|++||+.++.++.++. +|...|..++|+
T Consensus 265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~ 343 (406)
T KOG0295|consen 265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFS 343 (406)
T ss_pred ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEc
Confidence 33 33333 35667778887652 2589999999999999999999877665 899999999999
Q ss_pred CCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 225 PSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 225 ~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|.|+||+++..|+++++||+++++
T Consensus 344 p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 344 PGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred CCCeEEEEEecCCcEEEEEeccce
Confidence 999999999999999999998763
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=219.29 Aligned_cols=233 Identities=14% Similarity=0.219 Sum_probs=201.2
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecC-CcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
+..+...|..+|.++.|+++|.++++|+ +|.|++|+..- +.++.+..| ...|++++|+|+...++++|.||+|+|||
T Consensus 130 FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 130 FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence 4556678999999999999999999998 89999999654 444445554 58999999999889999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC----------CCCceeEeCCCCCEEEEEcCCC
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID----------YEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
....+.. ..+.+|.-.|.+++|+|....++++++|.. ++||.+.. ..+..+.|++++++|++++.|.
T Consensus 209 f~~~kee--~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 209 FRMPKEE--RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred ccCCchh--heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 9877643 567899999999999999999999998774 99997643 4567889999999999999999
Q ss_pred eEEEEECC--ceeeeec-ccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 156 KISIVENG--AKVSSLP-IDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 156 ~i~~~~~~--~~~~~~~-~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
.++++|.+ +.++.+. +...+++++|+| ...+|.+|+.||.|..|.+...+.+.....+|...|.+++|+|=|..|+
T Consensus 287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEe
Confidence 99999954 4444454 677899999999 4558899999999999999977777777778999999999999999999
Q ss_pred EEcCCCeEEEEEC
Q psy16005 232 ASDAHRKVVLYRV 244 (248)
Q Consensus 232 ~~~~d~~i~vw~~ 244 (248)
+|+.|.++++|.-
T Consensus 367 tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 367 TGSNDRTVRFWTR 379 (464)
T ss_pred ecCCCcceeeecc
Confidence 9999999999975
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=210.16 Aligned_cols=230 Identities=18% Similarity=0.282 Sum_probs=198.6
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|.++|.+++|+|+++++++++ ++.+++|++.+++....+..|...+..+.|+|+++.+++++.+|.|++||+.+++..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 5889999999999999999987 999999999988888888899999999999999999999999999999999987644
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIV-ENGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
..+..|...+.++.|+++++.+++++ ++.+.+|++. ....+.++.++|++.++++++.++.+++||.
T Consensus 87 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 87 --RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred --EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 45567788999999999988888888 5557999976 2345788999999999998888999999993
Q ss_pred --Cceeeeecc-cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 163 --GAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 163 --~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
++....+.. ...+.+++|+|+++.+++++.++.|++||+++++...... .|...+.++.|+|++.++++++.||.+
T Consensus 165 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred cccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 455555543 3478999999999999999999999999999877765553 678899999999998888888889999
Q ss_pred EEEECCCC
Q psy16005 240 VLYRVPDF 247 (248)
Q Consensus 240 ~vw~~~~~ 247 (248)
++|++.++
T Consensus 244 ~i~~~~~~ 251 (289)
T cd00200 244 RVWDLRTG 251 (289)
T ss_pred EEEEcCCc
Confidence 99999764
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=208.37 Aligned_cols=234 Identities=15% Similarity=0.184 Sum_probs=207.8
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
+..+-.+|.+.|.|+++.|-++++++|+ |+++.|||+.++++..++.+|...|..+++|+...|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 3344567999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC----------CCCceeEeCCCCCEEEEEcCCCe
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID----------YEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
+..+.+ ....+|-..|++++..|.-..|++++.|.+ ++||++.. ..+..+.+.|-...+++|+.|++
T Consensus 223 e~nkvI--R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVI--RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred hhhhhH--HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 998855 678899999999999999999999998885 99999754 45667778888899999999999
Q ss_pred EEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 157 ISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 157 i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
|++|| .++....+. +...+.+++.+|....+|+++.|. |+-|++..+..... ..+|.+.|++++...|+ ++++|
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n-lsgh~~iintl~~nsD~-v~~~G 377 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN-LSGHNAIINTLSVNSDG-VLVSG 377 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc-cccccceeeeeeeccCc-eEEEc
Confidence 99999 566666555 566789999999999999999885 99999999998777 44899999999988775 68889
Q ss_pred cCCCeEEEEECCCC
Q psy16005 234 DAHRKVVLYRVPDF 247 (248)
Q Consensus 234 ~~d~~i~vw~~~~~ 247 (248)
+..|.+.+||.++|
T Consensus 378 ~dng~~~fwdwksg 391 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSG 391 (460)
T ss_pred CCceEEEEEecCcC
Confidence 99999999999876
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=226.19 Aligned_cols=229 Identities=20% Similarity=0.314 Sum_probs=198.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEec-CCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNI-ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.+|...|..++|+|+++++++++ |+++++||+ ..+..++.+.+|...|++++|+|+++++++|+.|++|+|||+++++
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 56889999999999999999998 999999999 5568889999999999999999999999999999999999999987
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCC--------------CCceeEeCCCCCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDY--------------EPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
.. ..+.+|.+.|.+++|++++++|++++.++ +++|++.... .+..+.|+|++.+++++..|+.
T Consensus 280 ~~--~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 280 CV--RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred EE--EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 44 78889999999999999999999998777 5999986544 4578899999999999999999
Q ss_pred EEEEE--CCceeeeecc-cC---CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcE
Q psy16005 157 ISIVE--NGAKVSSLPI-DY---EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEY 229 (248)
Q Consensus 157 i~~~~--~~~~~~~~~~-~~---~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 229 (248)
+++|| .+.....+.. .. .+.+...++.++++++|+.|+.|++||+.++..+..+. +| ...+..+.++|...+
T Consensus 358 ~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-GHSKAAVSDLSSHPTENL 436 (456)
T ss_pred EEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-CCCCCceeccccCCCcCe
Confidence 99999 3444444432 22 22334457899999999999999999999987766665 78 889999999999999
Q ss_pred EEEEc--CCCeEEEEECC
Q psy16005 230 LVASD--AHRKVVLYRVP 245 (248)
Q Consensus 230 l~~~~--~d~~i~vw~~~ 245 (248)
+++++ .|+.+++|..+
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 99997 78999999864
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=212.30 Aligned_cols=231 Identities=17% Similarity=0.245 Sum_probs=178.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
..|...|.-+.||++|++||+++ |.+..+|.+.... ...++.+|..+|..+.||||.++|++++.|..+.+||+.+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 45889999999999999999998 8999999875533 4667889999999999999999999999999999999999
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
+.....+.- ++...+.+.+|.|||..+++|+.++ +..|+++.. ..+..+++++||+.+++...|..++
T Consensus 301 gd~~~~y~~-~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 301 GDLRHLYPS-GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred chhhhhccc-CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 986533332 3567899999999999999999776 477877532 2355667777777777777777777
Q ss_pred EEECCc--eeeeecccCCCceEE--------------------------------------------Ec-CCCCEEEEEc
Q psy16005 159 IVENGA--KVSSLPIDYEPSSIS--------------------------------------------LD-HEHGLVAVGG 191 (248)
Q Consensus 159 ~~~~~~--~~~~~~~~~~~~~~~--------------------------------------------~s-~~~~~l~~~~ 191 (248)
+++... ....+..+.++++++ |- .+..++++|+
T Consensus 380 l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 380 LYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred eechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC
Confidence 765111 110111112222222 21 2346889999
Q ss_pred CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~ 246 (248)
+|+.|+||+..+++++..+. +|...|++|+|+|..+ ++|+++.||+|+||-...
T Consensus 460 ED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 460 EDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999987766 9999999999999765 678899999999998753
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=220.47 Aligned_cols=229 Identities=19% Similarity=0.300 Sum_probs=200.1
Q ss_pred ccCCcEEEEeCCCCCEEEEeCC--cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNG--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~--~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.+.+|..++|+..|..+|.|+. |.+.||+..+...+...++|...+++++++|||+++|||+.||.|+|||...+-+.
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 3467899999999999999974 69999999998888888999999999999999999999999999999999998755
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEcCCC-eEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGADS-KISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ 160 (248)
.++..|+..|+.+.|+..|+.+++++-|| ++.||+.. +.+-.+++.+|.|.++.+|+.|. .|.+|
T Consensus 386 --vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 386 --VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred --EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence 78889999999999999999999999777 59999742 33446788899999999999876 68899
Q ss_pred E--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 161 E--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 161 ~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
+ +|+.+..+. |+.++.+++|+|++..|++++.|.+|++||+-......... .+...+..++|+|||+.|++++-||
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence 8 888888876 67788999999999999999999999999997654322222 5677899999999999999999999
Q ss_pred eEEEEECCCC
Q psy16005 238 KVVLYRVPDF 247 (248)
Q Consensus 238 ~i~vw~~~~~ 247 (248)
.|.+||...+
T Consensus 543 qItf~d~~~~ 552 (893)
T KOG0291|consen 543 QITFFDIKEA 552 (893)
T ss_pred eEEEEEhhhc
Confidence 9999998653
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=193.41 Aligned_cols=244 Identities=15% Similarity=0.142 Sum_probs=201.6
Q ss_pred CCcCcceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
|..+.+..-...-..++++|.++.|+-||++.++++ |.+|++|+...+.+++++.+|...|..++.+.|+..+++|+.|
T Consensus 1 ~~~e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 1 MRLELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred CCccCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCC
Confidence 444555433333356889999999999999988875 9999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCC--Cc--------eeEeCCCCCEE
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYE--PS--------SISLDHEHGLV 148 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~--~~--------~~~~~~~~~~~ 148 (248)
..+.+||+.+|+.. ..+.+|.+.|+.++|+.+...+++++-|. +++|+-+.... +. -....-.+..+
T Consensus 81 k~v~vwDV~TGkv~--Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heI 158 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVD--RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEI 158 (307)
T ss_pred ceEEEEEcccCeee--eecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEE
Confidence 99999999999955 78899999999999999999999999665 69999864322 21 12233346689
Q ss_pred EEEcCCCeEEEEECCce-eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe--EEEEEcC
Q psy16005 149 AVGGADSKISIVENGAK-VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPV--TDCSFSP 225 (248)
Q Consensus 149 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v--~~~~~s~ 225 (248)
+.|+.||+++.||.+.- +..-....+++++.|++|++..++++.|+++++.|-.+++.+.... +|...- ...+++.
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~q 237 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQ 237 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecc
Confidence 99999999999994332 2233357789999999999999999999999999999999876665 675543 4456777
Q ss_pred CCcEEEEEcCCCeEEEEECCCC
Q psy16005 226 SNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 226 ~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
....+++|++||.+++||+.+.
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred cceeEEeccCCceEEEEEeccc
Confidence 7889999999999999999764
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=206.64 Aligned_cols=227 Identities=16% Similarity=0.262 Sum_probs=201.6
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
..|+++|.++.|+.+|.+|++++ |+++.+||..+++..+.+..|..+-..+.|-.+ ..+++++.||.|+|+.+.....
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P 351 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRP 351 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCc
Confidence 45999999999999999999998 999999999999999999999888788899754 5699999999999999987774
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------CCCCCceeEeCCCC---------CEEEEEc
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP----------IDYEPSSISLDHEH---------GLVAVGG 152 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~----------~~~~~~~~~~~~~~---------~~~~~~~ 152 (248)
. .++.+|.++|.++.|+|.|..|+++++|+. ++|... +...+..+.|+|.+ ..+++++
T Consensus 352 ~--~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 352 V--KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred c--eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee
Confidence 4 677889999999999999999999999986 999964 34567778888864 4789999
Q ss_pred CCCeEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE
Q psy16005 153 ADSKISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.|+++++|| .+.++..+ .+..+|.+++|+|+|+++|+|+.||.|.+|+.++++...... ..+.|..++|+.+|.+
T Consensus 430 ~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~k 507 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDK 507 (524)
T ss_pred cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCE
Confidence 999999999 78888887 678889999999999999999999999999999999866553 4567999999999999
Q ss_pred EEEEcCCCeEEEEECC
Q psy16005 230 LVASDAHRKVVLYRVP 245 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~ 245 (248)
|..+-.|+.+++.|++
T Consensus 508 l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 508 LGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEecCCCceEEEec
Confidence 9999999999999985
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=202.05 Aligned_cols=228 Identities=15% Similarity=0.220 Sum_probs=196.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|+..|+++.||.+|.+||+|. +|.|+||...++.....+...-+.+.-+.|+|.+..|+.|+.||.+..|.+.++.
T Consensus 103 tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~- 181 (399)
T KOG0296|consen 103 TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA- 181 (399)
T ss_pred cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-
Confidence 46899999999999999999998 9999999999999888886667789999999999999999999999999999865
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCC-------------------------------------
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDY------------------------------------- 134 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~------------------------------------- 134 (248)
....+.+|+.++++-.|.|+|++++++..++. ++|++....
T Consensus 182 -~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 182 -LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred -eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 33678899999999999999999999998885 899973210
Q ss_pred ---------------------------CCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCC
Q psy16005 135 ---------------------------EPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHG 185 (248)
Q Consensus 135 ---------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~ 185 (248)
.+..+.++..=.+.|+|+-||+|.+|| ..+..+..+++..+..+.|-+ ..
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TD 339 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cc
Confidence 011122233335678889999999999 444566677888899999998 77
Q ss_pred EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 186 LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|++++.+|.|++||.+++++..... +|...|.+++++|+++++++++.|++.+||++.
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYT-GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEe-cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999977666 899999999999999999999999999999875
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=213.31 Aligned_cols=230 Identities=15% Similarity=0.214 Sum_probs=190.6
Q ss_pred cccccccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCC-CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIEN-PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
+..+ .+|...|.++.|.| .+.+|++++ |+.|+||++.. +++++++.+|..+|.+++|+++|..+++++.|+.+++|
T Consensus 207 ~~~~-~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 207 SHNL-SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred eeec-cCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 3444 35888999999999 777888887 99999999876 88999999999999999999999999999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCC-CEEEEEeCC-cEEEEEccCC----------CCCceeEeCCCCCEEEEEcC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDN-QRMISIVEN-GAKVSSLPID----------YEPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~-~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 153 (248)
|+++|+....+.. ...+.++.|.||+ +.+++|+.+ .++.||++.+ ..+..+.|-++++.+++.+.
T Consensus 286 DtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 286 DTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred ccccceEEEEEec---CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999997654443 4678999999998 666666554 4799998754 56788999999999999999
Q ss_pred CCeEEEEECCcee----------eeec-----------------------------------------ccCCCceEEEcC
Q psy16005 154 DSKISIVENGAKV----------SSLP-----------------------------------------IDYEPSSISLDH 182 (248)
Q Consensus 154 ~~~i~~~~~~~~~----------~~~~-----------------------------------------~~~~~~~~~~s~ 182 (248)
|+.+++|+.+..+ .+++ ..+....+.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 9999999832211 0000 001123578999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC-cEEEEEcCCCeEEEEE
Q psy16005 183 EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN-EYLVASDAHRKVVLYR 243 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~ 243 (248)
||++|++|+.||.+.+||.++-+....+. .|.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999998877666 789999999999976 4789999999999996
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=221.04 Aligned_cols=234 Identities=15% Similarity=0.208 Sum_probs=189.0
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC--------------------------------C-------
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN--------------------------------P------- 48 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~--------------------------------~------- 48 (248)
...+...|.+.|.++.||+||++||+|+ |+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 3455558999999999999999999998 99999998654 0
Q ss_pred ---------------------ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 49 ---------------------AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 49 ---------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
++.+.+.+|.+.|.++.||.+ ++|+++|.|.+|++|++...+++.. -.|.+.|+|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~---F~HndfVTc 414 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV---FSHNDFVTC 414 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeE---EecCCeeEE
Confidence 123446699999999999975 5899999999999999998887633 348999999
Q ss_pred EEEec-CCCEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCce--eeeec----
Q psy16005 108 IAWSP-DNQRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISIVENGAK--VSSLP---- 170 (248)
Q Consensus 108 ~~~~~-~~~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~---- 170 (248)
++|+| |.+++++|+-|+ +++|.+. .+.-++.+++.|+|+..++|+.+|.+++|++... .....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999 889999999665 6999985 4567899999999999999999999999994322 11111
Q ss_pred -----ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 171 -----IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 171 -----~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
....|+.+.+.|... .+++.+.|..|+|||.+...++..+...+ ...-....|+.||++|++++.|..|++|+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 122589999987443 68888899999999998888776665222 22335668999999999999999999999
Q ss_pred CCC
Q psy16005 244 VPD 246 (248)
Q Consensus 244 ~~~ 246 (248)
...
T Consensus 575 ~~~ 577 (712)
T KOG0283|consen 575 NDS 577 (712)
T ss_pred CCC
Confidence 743
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=217.96 Aligned_cols=240 Identities=20% Similarity=0.295 Sum_probs=210.3
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCC--cEEEEEccCCeEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG--FYIASGDISGKVR 83 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~ 83 (248)
+++..+...|.+++.-++|+|.|..+++|+ |+.++|||+..+.....+++|.+.|.++.|+|+- ..|++|..|++++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 345566667999999999999998899987 9999999999999999999999999999999964 4589999999999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEc--------------------------------
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSL-------------------------------- 130 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~-------------------------------- 130 (248)
+||+.+... ....+..|.+.|++++|.+|+..++++++|.+ .+|++
T Consensus 175 vwnl~~~~t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 175 VWNLNDKRT-CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEcccCch-HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 999997664 34667789999999999999999999998886 77875
Q ss_pred --------------------------------------------------------------------------------
Q psy16005 131 -------------------------------------------------------------------------------- 130 (248)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (248)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy16005 131 -------------------------------------------------------------------------------- 130 (248)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (248)
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence
Q ss_pred -----------------------------------------------cCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 131 -----------------------------------------------PIDYEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 131 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
.++..+++++++|+..++++|++|++.++|+
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 0224567889999999999999999999999
Q ss_pred CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 162 NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 162 ~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.......+. |...+.++.|+|..+.+++++.|++|+||.+.+..+..++. +|...|..+.|-.+|+.|++++.||.++
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEE
Confidence 344455555 56678999999999999999999999999999999988776 8999999999999999999999999999
Q ss_pred EEECCCCC
Q psy16005 241 LYRVPDFE 248 (248)
Q Consensus 241 vw~~~~~~ 248 (248)
+|++++.+
T Consensus 573 lWnikt~e 580 (775)
T KOG0319|consen 573 LWNIKTNE 580 (775)
T ss_pred EEeccchh
Confidence 99998864
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=216.49 Aligned_cols=229 Identities=14% Similarity=0.217 Sum_probs=204.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
+..+|-++.++|....++++- +|.|.|||.++...++.+.-..-+|.+..|-+..+++++|+.|..|+||+..+++.+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV- 90 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV- 90 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee-
Confidence 667899999999999998885 999999999999999999888899999999999999999999999999999999855
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC-----------CCCCceeEeCCC-CCEEEEEcCCCeEEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI-----------DYEPSSISLDHE-HGLVAVGGADSKISIVE 161 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 161 (248)
..+..|.+.|++++.+|...+++++++|-. ++|+.+. ..-+..++++|. .+.+++++-|++|++|.
T Consensus 91 -~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 -KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred -EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 788899999999999999999999999875 8999763 234678889885 57999999999999999
Q ss_pred CCceee--eec-ccCCCceEEEcCCC--CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 162 NGAKVS--SLP-IDYEPSSISLDHEH--GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 162 ~~~~~~--~~~-~~~~~~~~~~s~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
.++... ++. +...++|+.+-+-| .+|++|+.|..++|||..+..++.++. +|...|..+.|+|.-..+++|+.|
T Consensus 170 lgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred cCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcEEEEecCC
Confidence 665543 343 56679999998744 599999999999999999999987776 899999999999999999999999
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
|+++||+-.|.
T Consensus 249 GTvriWhs~Ty 259 (794)
T KOG0276|consen 249 GTVRIWNSKTY 259 (794)
T ss_pred ccEEEecCcce
Confidence 99999998775
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=202.81 Aligned_cols=226 Identities=17% Similarity=0.301 Sum_probs=195.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...+..+.|+|+++.+++++ ++.+++|++.+++....+..|...+.++.|+|+++++++++.+|.+.+||+.+++..
T Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 128 (289)
T cd00200 49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128 (289)
T ss_pred cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE
Confidence 4667788999999998888887 999999999988888888889989999999999899999888999999999977644
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIV-ENGAKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
..+..|...+.+++|+|+++++++++ ++.+.+|+++. ...+.++.++|+++.+++++.++.+++||.
T Consensus 129 --~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 129 --TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred --EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 45567888999999999999999888 55679999753 235788999999999999999999999994
Q ss_pred --Cceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 163 --GAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 163 --~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
++....+ .+...+.+++|+|++.++++++.++.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.+
T Consensus 207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 4556666 455678999999998899888889999999999877665555 788899999999999999999999999
Q ss_pred EEEE
Q psy16005 240 VLYR 243 (248)
Q Consensus 240 ~vw~ 243 (248)
++|+
T Consensus 286 ~iw~ 289 (289)
T cd00200 286 RIWD 289 (289)
T ss_pred EecC
Confidence 9996
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=199.98 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=203.1
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC-CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN-PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
...+ .+|...+..++|+..|+++++++ |-.+++||.++ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|+
T Consensus 143 e~~L-rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 143 ERSL-RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhh-hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 3444 45777899999999999999998 66799999987 556677779999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCC-----------
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHE----------- 144 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~----------- 144 (248)
+.++..+ ..+.+|...|..++.+.||..+++++.+. +++|-+.. +..+.+++|.|.
T Consensus 222 ~~tg~cv--~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 222 CDTGYCV--KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred cccceeE--EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 9999855 78999999999999999999999999776 59998753 345667776542
Q ss_pred ----CCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 145 ----HGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 145 ----~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
++++.+++.|++|++|| ++.++.++. +...+..++|+|.|++|+++..|+++++||++++++..... .|..-
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hf 378 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHF 378 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcce
Confidence 35899999999999999 777777765 56679999999999999999999999999999999977776 79999
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++++.|..+..++++|+-|.++++|..
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999975
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=197.11 Aligned_cols=230 Identities=15% Similarity=0.248 Sum_probs=202.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|.+.|.+..++.+....++++ |-+.++||.-+|..+..+ .|+..|.+++|+.|.++|++|+.+..++|||++..+..
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 5899999999998888888876 889999999999999888 78999999999999999999999999999999887653
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
..++.+|.+.|..+.|....+.++++++++ +++||.+. +..++++.++++|+++.+ ...+.|.+||
T Consensus 136 -p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdak 213 (334)
T KOG0278|consen 136 -PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAK 213 (334)
T ss_pred -chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEE-ecCceeEEeccc
Confidence 367889999999999999888888876665 69999764 456777788888887765 4557899999
Q ss_pred CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 162 NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
.-..+..+..+..+.+..++|+...+++|++|..++.||..+++.+.....+|.++|.++.|+|||...++|+.||+|++
T Consensus 214 sf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 214 SFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred cccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 55678888889999999999999999999999999999999999877765689999999999999999999999999999
Q ss_pred EECCCC
Q psy16005 242 YRVPDF 247 (248)
Q Consensus 242 w~~~~~ 247 (248)
|.+..+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 987654
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=187.68 Aligned_cols=230 Identities=14% Similarity=0.213 Sum_probs=193.7
Q ss_pred cccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
-.+|..+++-+.++.+|.+|++++ |....+|-..+|+.+.++.+|.+.|+|++.+.+.+.+++|+.|.++++||+++|+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 356999999999999999999998 9999999988999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc------EEEEEccC-----------------CCCCceeEeCCCCCEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG------AKVSSLPI-----------------DYEPSSISLDHEHGLV 148 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------~~i~~~~~-----------------~~~~~~~~~~~~~~~~ 148 (248)
.+..... +.+|..+.|+++|++++.+.++. +.+++++. +..++..-|.|-++.+
T Consensus 86 ~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 86 QLATWKT---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred EEEEeec---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 7644433 57899999999999999887653 35666542 2456778899999999
Q ss_pred EEEcCCCeEEEEE--CCce-eeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC----------------
Q psy16005 149 AVGGADSKISIVE--NGAK-VSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP---------------- 208 (248)
Q Consensus 149 ~~~~~~~~i~~~~--~~~~-~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~---------------- 208 (248)
++|..+|.|..|| +++. +... .+...++.++++||..++++++.|.+-++||..+.+.+.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence 9999999999999 3333 2222 356679999999999999999999999999987632111
Q ss_pred ---------------------------c-----------ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 209 ---------------------------K-----------AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 209 ---------------------------~-----------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+ ...+|-++|++++|+|+|+..++|+.||.|++..++
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 0 012688999999999999999999999999997654
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=202.76 Aligned_cols=217 Identities=17% Similarity=0.244 Sum_probs=181.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
....|.|+.+. ...+++|. |++|+|||..+....+.+.+|++.|.|+.|. .+.+++||.|.+|++||+++++.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l- 270 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL- 270 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh-
Confidence 34568888884 56788887 9999999999999999999999999999994 569999999999999999999965
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCC-------------CceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYE-------------PSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
..+-.|...|..+.|+ +.++++++.|. +.+|++..+.. +..+.| +.+++++++.|.+|++|
T Consensus 271 -~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 271 -NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 345 (499)
T ss_pred -hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEE
Confidence 5677899999999997 46888888776 59999875433 334444 45699999999999999
Q ss_pred E--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 161 E--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 161 ~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
+ +++.++.+. +...+.|+.+ .++++++|+.|.+|++||+..|.+...+. +|+.-|.++.| |.+.+++|+.||
T Consensus 346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRF--d~krIVSGaYDG 420 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDG 420 (499)
T ss_pred eccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheee--cCceeeeccccc
Confidence 9 556666665 3445666655 48899999999999999999999977666 89999999999 568899999999
Q ss_pred eEEEEECCCC
Q psy16005 238 KVVLYRVPDF 247 (248)
Q Consensus 238 ~i~vw~~~~~ 247 (248)
+|++||+.++
T Consensus 421 kikvWdl~aa 430 (499)
T KOG0281|consen 421 KIKVWDLQAA 430 (499)
T ss_pred eEEEEecccc
Confidence 9999999765
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=196.13 Aligned_cols=232 Identities=14% Similarity=0.203 Sum_probs=193.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC------------C------ceeeeeecCCcceEEEEECcCCcEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN------------P------AISDIYTEHSCAVNVAKYSPSGFYIA 74 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~------------~------~~~~~~~~~~~~v~~~~~s~~~~~l~ 74 (248)
..|.+++.+.+|||||.++++|+ |..|+|.|++. + ..++++..|.++|+++.|+|....|+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 35889999999999999999998 99999999872 1 24567779999999999999999999
Q ss_pred EEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc-------------CCCCCceeE
Q psy16005 75 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP-------------IDYEPSSIS 140 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~-------------~~~~~~~~~ 140 (248)
+|+.|++|++||+........+..-....+|.++.|+|.|.+|+++.+..+ ++|++. +...++++.
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR 268 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence 999999999999976543222222233578999999999999999988765 888874 345688999
Q ss_pred eCCCCCEEEEEcCCCeEEEEE--CCceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC-------
Q psy16005 141 LDHEHGLVAVGGADSKISIVE--NGAKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP------- 208 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~------- 208 (248)
+++.+++.++++.||.|++|| .++++.++. ....+.+..|..+|+++++.+.|..+++|.+.+++.+.
T Consensus 269 Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~ 348 (430)
T KOG0640|consen 269 YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT 348 (430)
T ss_pred ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc
Confidence 999999999999999999999 777777765 24457889999999999999999999999997764321
Q ss_pred -----------------------------------------cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 209 -----------------------------------------KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 209 -----------------------------------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.+..+|++.++.+.-||.+.-+++++.|..+++|--+
T Consensus 349 tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 349 TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 1223789999999999999999999999999999654
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=216.18 Aligned_cols=189 Identities=19% Similarity=0.311 Sum_probs=171.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.|+|..+.|+|+.++|++++ |.++++|.+.+....-.+++|..+|.++.|+|.|-++||++.|++-++|.......
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 46999999999999999999998 89999999999999999999999999999999999999999999999999988774
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
+ +.+.+|-+.|.|+.|+|+..++++++.|.. ++|+.. +..++.+++++|.|++|++|+.|+.|.+||
T Consensus 528 l--RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 528 L--RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred h--hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 4 788899999999999999999999998874 999975 356788999999999999999999999999
Q ss_pred --CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 162 --NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 162 --~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
.+..+..+ .+...+.++.|+.+|..||+|+.|++|++||+...
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 44555444 35666899999999999999999999999998654
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=192.47 Aligned_cols=229 Identities=17% Similarity=0.258 Sum_probs=189.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...+.+++.+|+.+++++|+ |...++|++.+++....+.+|+..|+++.||.+|.+||||+.+|.|+||+..++...
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE
Confidence 5889999999999999999987 899999999999999999999999999999999999999999999999999998855
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
. .+...-..+.-+.|+|-+..|++++.+|. .+|.++.. .+.++=.|.|+|+.++++..||+|++|+
T Consensus 142 ~--~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 142 W--KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred E--EeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 3 33333567888999999999999998885 88988753 3445567899999999999999999999
Q ss_pred -CCceeeeecccC----------------------------------------------------CCceEEE---cCCCC
Q psy16005 162 -NGAKVSSLPIDY----------------------------------------------------EPSSISL---DHEHG 185 (248)
Q Consensus 162 -~~~~~~~~~~~~----------------------------------------------------~~~~~~~---s~~~~ 185 (248)
+++++..+.... ...++.+ +..-.
T Consensus 220 ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp 299 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP 299 (399)
T ss_pred CCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc
Confidence 565555443000 0011222 22334
Q ss_pred EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 186 LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+.|+|+-||+|.|||+...+..... .|...|..+.|-+ ..+|++++.+|+|+.||.++|+
T Consensus 300 L~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 300 LAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 6788999999999999988775444 6889999999998 7899999999999999999984
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=188.13 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=169.2
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC-CCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE-NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.+|.+.|..+.|+|+|.+|++|+ |..|.+|+.. ..+-...+++|++.|..+.|.+|++.+++++.|.+|+.||+++|+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 46999999999999999999997 9999999954 345566788999999999999999999999999999999999998
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEE-EEeCCc-EEEEEccC---------CCC-------------------------
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMI-SIVENG-AKVSSLPI---------DYE------------------------- 135 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~-~~i~~~~~---------~~~------------------------- 135 (248)
.. +.+..|..-+..+.-+.-|..++ ++++|+ +++||++. .++
T Consensus 124 ~~--rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvW 201 (338)
T KOG0265|consen 124 RI--RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVW 201 (338)
T ss_pred ee--ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeee
Confidence 55 56666777777776444444443 344444 37777652 223
Q ss_pred -----------------CceeEeCCCCCEEEEEcCCCeEEEEECC-----c-eeeeec---cc--CCCceEEEcCCCCEE
Q psy16005 136 -----------------PSSISLDHEHGLVAVGGADSKISIVENG-----A-KVSSLP---ID--YEPSSISLDHEHGLV 187 (248)
Q Consensus 136 -----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-~~~~~~---~~--~~~~~~~~s~~~~~l 187 (248)
++.+..+++|..+.+-+.|.++++||.+ + ++..+. +. .....++|+|++..+
T Consensus 202 d~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i 281 (338)
T KOG0265|consen 202 DLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI 281 (338)
T ss_pred ccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcc
Confidence 3444444455555555555555555511 1 122221 11 112356899999999
Q ss_pred EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 188 AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.+|+.|..+++||......+..+. +|.+.|.+++|+|....|.+++.|.+|++=+
T Consensus 282 ~ags~dr~vyvwd~~~r~~lyklp-Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 282 TAGSADRFVYVWDTTSRRILYKLP-GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccccccceEEEeecccccEEEEcC-CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999888766555 8999999999999999999999999998743
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=185.43 Aligned_cols=231 Identities=18% Similarity=0.243 Sum_probs=189.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee--eeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD--IYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~--~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
..|...+.+++|+.+|..|++++ |+++.+|+++..+... ...+|.+.|-.++|+| ....+++++.|.+|++||++.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 46888999999999999999998 9999999998775544 3458999999999998 668899999999999999999
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
++........ ..-.-+.|+|+|+++++++.+. +...+.+ ....+..+.|+.++.++......|.|.+
T Consensus 97 ~k~~~~i~~~---~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 97 GKCTARIETK---GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred CcEEEEeecc---CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 9876444433 3345688999999999998665 3444432 3456778899988888888888899999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
.. .-++++.+. |+....|+.|+|+|++||+|+.|..+.+||+..--+++.+. .+.-+|+.++||.||++||++++|
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEEeccCcceeeccCcc
Confidence 76 555666665 44556788999999999999999999999998776655554 688899999999999999999999
Q ss_pred CeEEEEECCCCC
Q psy16005 237 RKVVLYRVPDFE 248 (248)
Q Consensus 237 ~~i~vw~~~~~~ 248 (248)
..|-|=+++||+
T Consensus 253 h~IDIA~vetGd 264 (313)
T KOG1407|consen 253 HFIDIAEVETGD 264 (313)
T ss_pred ceEEeEecccCC
Confidence 999888888774
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-31 Score=220.78 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=183.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC----c----eeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP----A----ISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRI 84 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~----~----~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 84 (248)
.|.+.|.+++|+|+|+++++++ |+.|+||++... . ....+ .+...+.+++|+| ++.+|++++.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 3788899999999999999987 999999997532 1 12223 3356799999987 5789999999999999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccCC---------CCCceeEe-CCCCCEEEEEc
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPID---------YEPSSISL-DHEHGLVAVGG 152 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~~---------~~~~~~~~-~~~~~~~~~~~ 152 (248)
||+.+++.+ ..+.+|...|.+++|+| ++.+|++++.++ +++|++... ..+.++.| .+++..+++|+
T Consensus 560 Wd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 560 WDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 999988754 56778999999999997 788999999877 599998643 34566777 45789999999
Q ss_pred CCCeEEEEECCc---eeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC------CCCCcccccCCcCeEEEE
Q psy16005 153 ADSKISIVENGA---KVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK------SLSPKAELDHLGPVTDCS 222 (248)
Q Consensus 153 ~~~~i~~~~~~~---~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~------~~~~~~~~~~~~~v~~~~ 222 (248)
.|+.|++||... ....+ .+...+.++.|. ++.+|++++.|+.|++||++.. +.+.. ..+|...+..++
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~-~~gh~~~i~~v~ 715 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHS-FMGHTNVKNFVG 715 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEE-EcCCCCCeeEEE
Confidence 999999999432 23333 355678899997 6789999999999999999753 22222 337888999999
Q ss_pred EcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 223 FSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 223 ~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
|+|++++|++|+.|+.|++|+...
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCC
Confidence 999999999999999999999753
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=205.37 Aligned_cols=226 Identities=17% Similarity=0.247 Sum_probs=198.8
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...|+++.|+++|.+|++|. +|.|.|||..+.+.++.+.+ |...|.+++|+ +..+.+|+.++.|..+|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 68899999999999999997 99999999999999988888 99999999998 6689999999999999999888665
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------CCCCCceeEeCCC-CCEEEEEc--CCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP----------IDYEPSSISLDHE-HGLVAVGG--ADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~----------~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~ 160 (248)
. .+.+|...|..+.|++|++++++++.|. +.||+.. +...+..++|+|- ..+||+|+ .|+.|++|
T Consensus 295 ~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 S-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred h-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 4 5889999999999999999999999766 5999973 3456788999985 55788754 68999999
Q ss_pred E--CCceeeeecccCCCceEEEcCCCCEEEEE--cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 161 E--NGAKVSSLPIDYEPSSISLDHEHGLVAVG--GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 161 ~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
| .+..+..+.....|..+.|++..+.|+++ ..++.|.||+..+.+.+..+. +|...|..++++|||..+++|+.|
T Consensus 374 n~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 374 NTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-CCcceeEEEEECCCCCEEEEeccc
Confidence 9 77888888889999999999999877765 456789999999977766555 899999999999999999999999
Q ss_pred CeEEEEECCC
Q psy16005 237 RKVVLYRVPD 246 (248)
Q Consensus 237 ~~i~vw~~~~ 246 (248)
.++++|++=+
T Consensus 453 ETlrfw~~f~ 462 (484)
T KOG0305|consen 453 ETLRFWNLFD 462 (484)
T ss_pred CcEEeccccC
Confidence 9999999743
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=219.36 Aligned_cols=224 Identities=13% Similarity=0.158 Sum_probs=182.3
Q ss_pred cCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
...+.+++|+|. +.+|++++ |+.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 467889999874 67888887 99999999999998888999999999999997 7899999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEe-cCCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWS-PDNQRMISIVENG-AKVSSLPID-----------YEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
..+.. ...+.++.|+ +++.+|++++.++ +++|+++.. ..+..+.|. ++..+++++.|+.|++|
T Consensus 612 --~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 612 --GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred --EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 33333 3678999995 5789999999777 599998642 245567775 67899999999999999
Q ss_pred ECC--------ceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc------------cccCCcCeE
Q psy16005 161 ENG--------AKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA------------ELDHLGPVT 219 (248)
Q Consensus 161 ~~~--------~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------~~~~~~~v~ 219 (248)
|.. ..+..+. +...+.+++++|++.+|++|+.|+.|++|+.......... ...+...|.
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 943 3344444 3455788999999999999999999999998655322111 113556799
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+++|+|++..|++++.||.|+||++
T Consensus 768 ~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999999996
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=209.90 Aligned_cols=233 Identities=14% Similarity=0.182 Sum_probs=201.6
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc----eeeeeecCCcceEEEEECcCC-cEEEEEccCCeEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA----ISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRI 84 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i 84 (248)
.+-.+|...|.++....+|.+|++++ |+++++|.++++. ++....+|.+.|.+++++..+ .+|+++|.|+++++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 35567999999999777888999998 9999999874432 344567999999999998744 78999999999999
Q ss_pred EECCCCce-------eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------CCCCCceeEeCCCCC
Q psy16005 85 WDTVNKEH-------ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP----------IDYEPSSISLDHEHG 146 (248)
Q Consensus 85 wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~----------~~~~~~~~~~~~~~~ 146 (248)
|++...+. ........|...|++++.+|+.+.+++++.|.. ++|+++ +...+.++.|++..+
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence 99986221 111234578999999999999999999999886 999986 345678999999999
Q ss_pred EEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 147 LVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
.+++++.|++|++|. +..++.++. +...+..+.|-.+|+.|++++.||-+++|++++++++..+. .|+..|++++-
T Consensus 519 ~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~ 597 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSV 597 (775)
T ss_pred eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEee
Confidence 999999999999998 778889998 67778999999999999999999999999999999987776 79999999999
Q ss_pred cCCCcEEEEEcCCCeEEEEEC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+|...++++|+.||.|.+|.=
T Consensus 598 ~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 598 SPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred cCccceeEecCCCeEEEEeec
Confidence 999999999999999999963
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-30 Score=181.06 Aligned_cols=230 Identities=9% Similarity=0.159 Sum_probs=193.1
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc--CCeEEEEECCCCce
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEH 92 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~ 92 (248)
..+.|.++.|+++|.++++++ |..+++||..++++.+++..++-.+..++|......++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 567899999999999999976 789999999999999999888888999999876666666665 88999999999996
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCCC--------CCceeEeCCCCCEEEEEcCCCeEEEEEC-
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPIDY--------EPSSISLDHEHGLVAVGGADSKISIVEN- 162 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 162 (248)
+ +.+.+|...|..++.+|-+..+++++.| .+++||++... .....+++|+|-++|++...+.|++||.
T Consensus 93 l--RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 93 L--RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred E--EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 5 7899999999999999988999999877 56999998543 3456789999999999999889999992
Q ss_pred ---Cceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCc---CeEEEEEcCCCcEEEE
Q psy16005 163 ---GAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLG---PVTDCSFSPSNEYLVA 232 (248)
Q Consensus 163 ---~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~ 232 (248)
..+...+.. ..+.+.+.|||||++++.++..+.+++.|.-+|.....+. .+.. -.-...|+||++++++
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSATFTPDSKFVLS 249 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEEECCCCcEEEE
Confidence 334444443 3346889999999999999999999999999998665544 2221 2256789999999999
Q ss_pred EcCCCeEEEEECCCCC
Q psy16005 233 SDAHRKVVLYRVPDFE 248 (248)
Q Consensus 233 ~~~d~~i~vw~~~~~~ 248 (248)
++.||+|.+|++++|+
T Consensus 250 gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 250 GSDDGTIHVWNLETGK 265 (311)
T ss_pred ecCCCcEEEEEcCCCc
Confidence 9999999999999874
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=203.94 Aligned_cols=202 Identities=15% Similarity=0.247 Sum_probs=154.8
Q ss_pred ccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCc-------eeeeeecCCcceEEEEECcCC-cEEEEEccCCeEE
Q psy16005 14 RTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPA-------ISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVR 83 (248)
Q Consensus 14 ~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 83 (248)
.+|.+.|.+++|+| ++++|++++ |+.|++||+.++. .+..+.+|...|.+++|+|++ ++|++++.|++|+
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 46889999999999 888999887 9999999997642 456678999999999999975 7999999999999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
+||+++++.. ..+..|...|.+++|+|+++.|++ ++.|+.|++||
T Consensus 152 IWDl~tg~~~--~~l~~h~~~V~sla~spdG~lLat-------------------------------gs~Dg~IrIwD~r 198 (493)
T PTZ00421 152 VWDVERGKAV--EVIKCHSDQITSLEWNLDGSLLCT-------------------------------TSKDKKLNIIDPR 198 (493)
T ss_pred EEECCCCeEE--EEEcCCCCceEEEEEECCCCEEEE-------------------------------ecCCCEEEEEECC
Confidence 9999988744 566788899999999998876655 45556666666
Q ss_pred CCceeeeecccC--CCceEEEcCCCCEEEEEc----CCCcEEEEEcCCCCCCCccc-ccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 162 NGAKVSSLPIDY--EPSSISLDHEHGLVAVGG----ADSKVHIYELNNKSLSPKAE-LDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 162 ~~~~~~~~~~~~--~~~~~~~s~~~~~l~~~~----~d~~v~i~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
.++.+..+..+. ....+.|.+++..+++++ .|+.|++||+++........ ..+...+....|++++++|++++
T Consensus 199 sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 199 DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 333444443222 234677888877776653 47899999998765433222 22344566778999999998887
Q ss_pred -CCCeEEEEECCCCC
Q psy16005 235 -AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 -~d~~i~vw~~~~~~ 248 (248)
.|+.|++||+.+++
T Consensus 279 kgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 279 KGEGNIRCFELMNER 293 (493)
T ss_pred eCCCeEEEEEeeCCc
Confidence 59999999998763
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=184.63 Aligned_cols=225 Identities=17% Similarity=0.267 Sum_probs=187.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCc--EEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF--YIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|.+.+++++.+ ++++++|+ |.+|+|||+.+......+..|.+.|+++.|.+... .|++|+.||.|.+|+...-+
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~ 118 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE 118 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE
Confidence 588999999986 89999997 99999999999999988989999999999998654 89999999999999998775
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
....+.+|.+.|+.++.+|.++..++.+.|+. +.|++- .......+.|+|.|.+++.+..+ .|-+|.
T Consensus 119 --~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q 195 (362)
T KOG0294|consen 119 --LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQ 195 (362)
T ss_pred --EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEe
Confidence 44788999999999999999999998888775 999974 34456678999999998887775 456665
Q ss_pred --CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE--cCCCcEEEEEcCCC
Q psy16005 162 --NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF--SPSNEYLVASDAHR 237 (248)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~ 237 (248)
.......+..+..+.|+.|- ++..|++|..|+.|.+||.....+...+. +|...|.++.+ .|++.+|+++++||
T Consensus 196 ~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 196 LDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred cccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-cchhheeeeEEEecCCceEEEEeccCc
Confidence 44444445445555566554 56689999999999999999866655444 89999999984 46788999999999
Q ss_pred eEEEEECCC
Q psy16005 238 KVVLYRVPD 246 (248)
Q Consensus 238 ~i~vw~~~~ 246 (248)
.|+|||++.
T Consensus 274 ~I~vWd~~~ 282 (362)
T KOG0294|consen 274 FIKVWDIDM 282 (362)
T ss_pred eEEEEEccc
Confidence 999999864
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=189.25 Aligned_cols=236 Identities=14% Similarity=0.199 Sum_probs=193.6
Q ss_pred ccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee--------ecCCcceEEEEECcCCcEEEEEccCC
Q psy16005 10 ATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY--------TEHSCAVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~dg 80 (248)
..+.-+....+.|..|||||++|++|+ ||.|.+||..+|+....+ --+..+|.|+.||.|...+|+|+.||
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 445566778899999999999999999 999999999998865543 35678999999999999999999999
Q ss_pred eEEEEECCCCceeeeeecc-CCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC----------CCCCceeEeCCCCCEE
Q psy16005 81 KVRIWDTVNKEHILKNEFH-PIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI----------DYEPSSISLDHEHGLV 148 (248)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~~~~ 148 (248)
.|++|.+++|.++. .+. .|...|.++.|+.|+..+++++.|.. ++.-+.. ..-++...|.++|..+
T Consensus 286 kIKvWri~tG~ClR--rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 286 KIKVWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred cEEEEEEecchHHH--HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeE
Confidence 99999999999763 443 78999999999999999999987764 7777653 3446788899999999
Q ss_pred EEEcCCCeEEEEE--CCceeeeec---ccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCccccc--CCcCeEE
Q psy16005 149 AVGGADSKISIVE--NGAKVSSLP---IDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELD--HLGPVTD 220 (248)
Q Consensus 149 ~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~v~~ 220 (248)
++++.||++++|+ +++++.++. .+.+++.+..-| +-..++++...++|+|.++... .+..+..+ ..+...+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFSSGKREGGDFIN 442 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeeccCCccCCceEE
Confidence 9999999999999 566666554 355677777766 4458899999999999998643 33344333 3455667
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 221 CSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 221 ~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
...||.|.++++.+.|+.++.|.+.+|+
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 7899999999999999999999987764
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=208.84 Aligned_cols=232 Identities=18% Similarity=0.195 Sum_probs=189.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC-------C-----------ceeeeeecCCcceEEEEECcCCcEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN-------P-----------AISDIYTEHSCAVNVAKYSPSGFYIA 74 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~-------~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~ 74 (248)
..|.+.|.|+.|+|||++||+|+ |+.|.||.... + +....+.+|...|..++|+|++.+|+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 35899999999999999999998 78899998772 1 24567889999999999999999999
Q ss_pred EEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC----------------CCCCc
Q psy16005 75 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI----------------DYEPS 137 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~----------------~~~~~ 137 (248)
+++.|++|.|||..+.+. ...+.+|.+.|..+.|+|-|++|++-++|+. ++|+... .....
T Consensus 146 S~s~DnsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EecccceEEEEcccccee--eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 999999999999999864 4778899999999999999999999998885 9998421 22346
Q ss_pred eeEeCCCCCEEEEEcC----CCeEEEEECCce---eeeecccCCCceEEEcC------CC-------C----EEEEEcCC
Q psy16005 138 SISLDHEHGLVAVGGA----DSKISIVENGAK---VSSLPIDYEPSSISLDH------EH-------G----LVAVGGAD 193 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~----~~~i~~~~~~~~---~~~~~~~~~~~~~~~s~------~~-------~----~l~~~~~d 193 (248)
.+.|+|||++|++... ...+.+.+.+.- ..-+.|..++.++.|+| .. . .+|+|+.|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 7899999999997543 335777764332 22334677788999987 11 1 68899999
Q ss_pred CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++|.||.....++......-....|.+++|+|||-.|++++.||+|.+..++..
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 999999997777655544335678999999999999999999999999988654
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=187.39 Aligned_cols=229 Identities=17% Similarity=0.202 Sum_probs=192.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcC---CcEEEEEccCCeEEEEECCCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS---GFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.|...|.++... ++++++|+ ||.+++||. .|+...++.+|.++|.+++|.-. ...+++++.|.++++|..+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 477888888877 77899987 999999995 58888889999999998888542 346999999999999999887
Q ss_pred ceeeeee--ccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc-----------------------------------C
Q psy16005 91 EHILKNE--FHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP-----------------------------------I 132 (248)
Q Consensus 91 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~-----------------------------------~ 132 (248)
+...... ..+|...|.++...++|..+++++-|. +.+|+.. +
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 7543333 348999999999999999999999776 5999942 1
Q ss_pred CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CCC
Q psy16005 133 DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS--LSP 208 (248)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~--~~~ 208 (248)
..++..+.|++ ...+.+++.|.+|+.|| ++.....+......+++..+|..++|++|+.|..+++||.+++. .+.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence 23456677777 77888999999999999 78888888888999999999999999999999999999998864 344
Q ss_pred cccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCCC
Q psy16005 209 KAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 209 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~ 247 (248)
....+|.+.|.++.|+|... .|++++.|+++++||+++-
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 45558999999999999876 5678899999999999864
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=191.94 Aligned_cols=229 Identities=17% Similarity=0.269 Sum_probs=192.2
Q ss_pred ccCCcEEEEeCCCCCE-EEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 16 QRGQPIVLGGDPKGKN-FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~-l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
....|.+++|||...+ +++++.-.+.+|+..+....+.+......+.++.|-.||++|+.|+..|.|+|+|+.+.. .
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--I 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--H
Confidence 4467999999997764 777778899999999888888787888999999999999999999999999999966543 3
Q ss_pred eeeccCCCCCeeEEEEecCCC-EEEEEeCCcE-EEEEccC----------CCCCceeEeCCCC-CEEEEEcCCCeEEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQ-RMISIVENGA-KVSSLPI----------DYEPSSISLDHEH-GLVAVGGADSKISIVE 161 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 161 (248)
...+.+|..++..+.|+|+++ .+++++++++ ++|++.. ...+++.+++|.. ..+++|+.||.|++||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 367889999999999999654 5566667775 8888754 3446778888764 4889999999999999
Q ss_pred C---CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 162 N---GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 162 ~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
. ...+.++.+..++..+.+-|.|..+++++. +.|++||+.++.........|...|+|+++..++..|++++-|+.
T Consensus 183 tR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 183 TRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred eccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 3 356788889999999999999999999885 469999999766554555459999999999999999999999999
Q ss_pred EEEEECCCC
Q psy16005 239 VVLYRVPDF 247 (248)
Q Consensus 239 i~vw~~~~~ 247 (248)
+++||+.+.
T Consensus 262 VKVfd~t~~ 270 (487)
T KOG0310|consen 262 VKVFDTTNY 270 (487)
T ss_pred eEEEEccce
Confidence 999998765
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-30 Score=201.92 Aligned_cols=232 Identities=11% Similarity=0.146 Sum_probs=197.5
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
+..+ ..|.|+|..++|+|++.++++|+ |-.|++|+..+.+++.++.+|-+-|..+.|++.-.+|+++|.|.+|+||+.
T Consensus 44 i~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 44 IDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred Hhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 3344 35999999999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc-----------------------------------
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP----------------------------------- 131 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~----------------------------------- 131 (248)
.+++++ ..+.+|+..|.|.+|+|....+++++-|. +++||+.
T Consensus 123 qsr~~i--avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 123 QSRKCI--AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred cCCceE--EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 999966 67889999999999999999999999665 5999973
Q ss_pred ----CCCCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cceeeee----cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC
Q psy16005 132 ----IDYEPSSISLDHEHGLVAVGGADSKISIVEN-GAKVSSL----PIDYEPSSISLDHEHGLVAVGGADSKVHIYELN 202 (248)
Q Consensus 132 ----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~ 202 (248)
++..++-++|+|.-.++++|+.|..|++|.. ....... .|...+.++-|+|...++++.++|++|++||+.
T Consensus 201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred eecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 1234566788999999999999999999993 3333333 356779999999999999999999999999999
Q ss_pred CCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 203 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..+.+..+... .+..+.++-+|..+.+++|. |+-+.||.++
T Consensus 281 kRt~v~tfrre-ndRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 281 KRTSVQTFRRE-NDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred cccceeeeecc-CCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 99887777643 45789999999998777664 5555666554
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=198.01 Aligned_cols=229 Identities=19% Similarity=0.242 Sum_probs=202.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.+|+..|.++++|.+...+++++++.+++|+..+.++++++.. +.+.+..|-|.++++++|...|.+.+||+.+...+
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 4699999999999999999999999999999999999998864 37899999999999999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------------------CCCCCceeEeCCCCCEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP----------------------IDYEPSSISLDHEHGLVAV 150 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~----------------------~~~~~~~~~~~~~~~~~~~ 150 (248)
-..++|.+.++.++.+||++.+++++.|.. ++|++. ....+.++.++||++++++
T Consensus 448 --Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 448 --ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred --hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 456689999999999999999999998875 899863 2344678899999999999
Q ss_pred EcCCCeEEEEECCc---eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 151 GGADSKISIVENGA---KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 151 ~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
+--|.++++|-... .+.-+.|.-++.|+.+|||++.+++|+.|..|++|-++-|.+...+. +|...|.++.|.|..
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKT 604 (888)
T ss_pred EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccc
Confidence 99999999976322 23444577889999999999999999999999999999999876665 899999999999999
Q ss_pred cEEEEEcCCCeEEEEECCCC
Q psy16005 228 EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~~ 247 (248)
..+++++.|+.|+-||-..+
T Consensus 605 ~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred eeEEEecCcceEEeechhhh
Confidence 99999999999999987654
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=177.97 Aligned_cols=226 Identities=13% Similarity=0.176 Sum_probs=182.2
Q ss_pred cCCcEEEEeCCCCC-E-EEEeCCcEEEEEecCC-CceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCce
Q psy16005 17 RGQPIVLGGDPKGK-N-FLYTNGNSVIIRNIEN-PAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 17 ~~~v~~~~~s~~~~-~-l~~~~~~~v~v~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
...+..++|+++.. . +++.+||.+++||+.. ..+++.++.|...|.++.|++ +++.++++|.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 45688899999654 3 3334599999999643 457788999999999999999 667788899999999999988885
Q ss_pred eeeeeccCCCCCeeEEEEec-CCCEEEEEeCCcE-EEEEccCCC----------CCceeEeCC-CCCEEEEEcCCCeEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSP-DNQRMISIVENGA-KVSSLPIDY----------EPSSISLDH-EHGLVAVGGADSKISI 159 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~-~i~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~i~~ 159 (248)
+ .++.+|+..|+..+|+| ..+.+++++.|+. ++|+++..+ ++.++.|+. +.+.+++|+.|+.|+.
T Consensus 140 v--~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 140 V--QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred e--EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 5 67889999999999999 5678888887775 999987543 345566664 5678999999999999
Q ss_pred EECC---ceeeee-cccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC-CcEEEEE
Q psy16005 160 VENG---AKVSSL-PIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS-NEYLVAS 233 (248)
Q Consensus 160 ~~~~---~~~~~~-~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~ 233 (248)
||.+ .++..+ .+...+..+.|||... .|++++.|-+++|||...+.........|..-+..+.||+- +.++|++
T Consensus 218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred EehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 9933 344444 3566789999999654 89999999999999998766544444468889999999985 5689999
Q ss_pred cCCCeEEEEEC
Q psy16005 234 DAHRKVVLYRV 244 (248)
Q Consensus 234 ~~d~~i~vw~~ 244 (248)
+.|+.++||+-
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999983
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=204.29 Aligned_cols=229 Identities=12% Similarity=0.231 Sum_probs=197.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...++-.++|+|....++++- .|.|.+||..-+.++..+..|.++|..++|+|++.++++|+.|-.|++|+.++.+++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl- 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL- 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-
Confidence 446788999999999999986 999999999999999999999999999999999999999999999999999998855
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCC----------CCceeEeCCCCCEEEEEcCCCeEEEEE-C
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDY----------EPSSISLDHEHGLVAVGGADSKISIVE-N 162 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 162 (248)
+++.+|-+.|+.+.|++.-..++++++|.. +||+++... -+.+..|+|...++++++-|.+|++|| .
T Consensus 87 -ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 87 -FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred -hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 889999999999999999999999998885 999987543 356778999999999999999999999 1
Q ss_pred Ccee------------------------------eee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-CCcc
Q psy16005 163 GAKV------------------------------SSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-SPKA 210 (248)
Q Consensus 163 ~~~~------------------------------~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~ 210 (248)
|-.. +.+ .|...++.++|+|.-.++++|+.|..|++|.+...+. ....
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh
Confidence 1100 001 1345578899999999999999999999999876543 1223
Q ss_pred cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 211 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..+|.+.|.++-|+|....+++.+.|+.|+|||+..
T Consensus 246 crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred hhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 348999999999999999999999999999999864
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=184.33 Aligned_cols=224 Identities=17% Similarity=0.241 Sum_probs=183.1
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.|.|.|+.|. .+.+++|+ |.+|++||.++++++.++-.|.+.|..+.|+. .+++++|.|.++.+||+.....
T Consensus 234 ~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 234 TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD 309 (499)
T ss_pred hcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH
Confidence 4699999999985 56888886 99999999999999999999999999999974 5899999999999999987643
Q ss_pred e-eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCCCc-------eeEe-CCCCCEEEEEcCCCeEEEEE-
Q psy16005 93 I-LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYEPS-------SISL-DHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 93 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~i~~~~- 161 (248)
+ ....+.+|...|..+.|+ .+++++++.|. +++|++....-++ .++. .-.++++++|+.|.+|++||
T Consensus 310 it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEec
Confidence 2 335677999999999995 56999988776 5999987544333 2332 33578999999999999999
Q ss_pred -CCceeeeeccc-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc--------ccccCCcCeEEEEEcCCCcEEE
Q psy16005 162 -NGAKVSSLPID-YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK--------AELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 162 -~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
.|.+++.++.+ .-+.|+.|+ .+.+++|+.||.|++||+..+..... ....|.+.|..+.| |...++
T Consensus 388 ~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIv 463 (499)
T KOG0281|consen 388 ECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQII 463 (499)
T ss_pred cccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEE
Confidence 78888877754 447888886 57899999999999999987654321 12258899999999 567899
Q ss_pred EEcCCCeEEEEECCCC
Q psy16005 232 ASDAHRKVVLYRVPDF 247 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~ 247 (248)
+++.|.+|.+||+.++
T Consensus 464 sssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNG 479 (499)
T ss_pred eccCCCeEEEEEcCCC
Confidence 9999999999998765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=192.59 Aligned_cols=211 Identities=14% Similarity=0.171 Sum_probs=159.3
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCcee------eeeeccCCCCCeeEEE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHI------LKNEFHPIGGPIKDIA 109 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~~~ 109 (248)
.+.+++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||+|++||+.++... ....+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 568999998777777888999999999999996 789999999999999999864321 1235678999999999
Q ss_pred EecCCCEE-EEEeCCc-EEEEEccC---------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccC-CC
Q psy16005 110 WSPDNQRM-ISIVENG-AKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDY-EP 175 (248)
Q Consensus 110 ~~~~~~~l-~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~-~~ 175 (248)
|+|++..+ ++++.|+ +++|++.. ...+.+++|+|+|.++++++.|+.|++|| .++.+..+..+. .+
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 99998765 5667665 69999864 34577899999999999999999999999 455555555332 22
Q ss_pred ce-----EEEcCCCCEEEEEcCCC----cEEEEEcCCC-CCCCccccc-CCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 176 SS-----ISLDHEHGLVAVGGADS----KVHIYELNNK-SLSPKAELD-HLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 176 ~~-----~~~s~~~~~l~~~~~d~----~v~i~d~~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.. ..|++++.+|++++.++ +|+|||+++. +.+...... +.+.+......++|.++++|+.|+.|++|++
T Consensus 213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 22 23568888888877664 7999999963 333332212 2333333334556888999999999999999
Q ss_pred CCC
Q psy16005 245 PDF 247 (248)
Q Consensus 245 ~~~ 247 (248)
..+
T Consensus 293 ~~~ 295 (568)
T PTZ00420 293 SLG 295 (568)
T ss_pred cCC
Confidence 754
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=171.19 Aligned_cols=194 Identities=17% Similarity=0.245 Sum_probs=160.2
Q ss_pred eeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCc-eeeeeec-cCCCCCeeEEEEecCCCEEEEEeCCcE-
Q psy16005 50 ISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKE-HILKNEF-HPIGGPIKDIAWSPDNQRMISIVENGA- 125 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~- 125 (248)
..+.+++|++.+..++|+|- |..||+++.|..|++|+...+. ...+..+ .+|+..|++++|+|.|++|++++-|..
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45677899999999999997 8899999999999999998533 2232222 478999999999999999999998775
Q ss_pred EEEEcc------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC--c---eeeee-cccCCCceEEEcCCCCEE
Q psy16005 126 KVSSLP------------IDYEPSSISLDHEHGLVAVGGADSKISIVENG--A---KVSSL-PIDYEPSSISLDHEHGLV 187 (248)
Q Consensus 126 ~i~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~---~~~~~-~~~~~~~~~~~s~~~~~l 187 (248)
.||.-. ++..+.+++|+++|++||+++.|+.+-+|... . ....+ +|...+..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 676632 45678999999999999999999999999822 2 23333 356678999999999999
Q ss_pred EEEcCCCcEEEEEcCC-C--CCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 188 AVGGADSKVHIYELNN-K--SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~-~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++++.|++|++|.-.. . .+...+ .+|...|.+++|+|.|..|++++.|++++||.+
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 9999999999998773 2 223333 378889999999999999999999999999984
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=195.48 Aligned_cols=228 Identities=18% Similarity=0.214 Sum_probs=195.6
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-----Cc
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-----KE 91 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-----~~ 91 (248)
+-+.+..|-|.+++++.|. .|.+.+||+.....+..++.|.+.|..++.+||++.+++||.|.+|++||..- +.
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 4788999999999999997 89999999999999999999999999999999999999999999999999741 11
Q ss_pred eeeeee-----ccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCC
Q psy16005 92 HILKNE-----FHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 92 ~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
...... .-.-...|.|+.+||||++|+++--| .+++|-++ +.-++.++.++|+++++++|+.|+
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 100011 11235789999999999999998744 45777654 466889999999999999999999
Q ss_pred eEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 156 KISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
.|++|- .|.+-..+ .|...+.++.|-|+...+.+++.|+.|+-||-...+.+..+. +|...|++++.+|+|.++++
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-cchheeeeeEEcCCCCeEEe
Confidence 999996 66666554 467788999999999999999999999999999988877766 89999999999999999999
Q ss_pred EcCCCeEEEEECCC
Q psy16005 233 SDAHRKVVLYRVPD 246 (248)
Q Consensus 233 ~~~d~~i~vw~~~~ 246 (248)
++.|..|++|....
T Consensus 652 ~shD~sIRlwE~td 665 (888)
T KOG0306|consen 652 SSHDKSIRLWERTD 665 (888)
T ss_pred ccCCceeEeeeccC
Confidence 99999999998643
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=179.62 Aligned_cols=227 Identities=13% Similarity=0.261 Sum_probs=193.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|...+..+++|+--.|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||+++...+
T Consensus 191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V 270 (460)
T KOG0285|consen 191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV 270 (460)
T ss_pred chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE
Confidence 4888999999999999999987 999999999999999999999999999999999999999999999999999998855
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
..+.+|..+|..+.+.|-...+++++.|+ +++||+.. ...+++++.+|....+++++.| .|+.|+
T Consensus 271 --~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 271 --HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKL 347 (460)
T ss_pred --EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence 78899999999999999888899998777 59999864 3557788999999999988876 578888
Q ss_pred -CCceeeeecccC-CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-------ccCCcCeEEEEEcCCCcEEEE
Q psy16005 162 -NGAKVSSLPIDY-EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-------LDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 162 -~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~ 232 (248)
.+..+..+..+. -+++++.+.|+ ++++|+.+|.+.+||.+++...+... ...+..|.+.+|...|..|++
T Consensus 348 p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred CccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 555555555433 46888888776 78899999999999999876433321 124567999999999999999
Q ss_pred EcCCCeEEEEECC
Q psy16005 233 SDAHRKVVLYRVP 245 (248)
Q Consensus 233 ~~~d~~i~vw~~~ 245 (248)
+..|.+|++|.-+
T Consensus 427 ~eadKtIk~~keD 439 (460)
T KOG0285|consen 427 GEADKTIKMYKED 439 (460)
T ss_pred ccCCcceEEEecc
Confidence 9999999999753
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=185.66 Aligned_cols=223 Identities=17% Similarity=0.237 Sum_probs=189.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.+..+.++.|-.||+++++|. .|.|+|+|+.+...++.+..|..++....|+| ++..+++|+.|+.+++||+.+...
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v- 145 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV- 145 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-
Confidence 456789999999999999998 89999999777667888999999999999999 557788899999999999998873
Q ss_pred eeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
...+.+|++.|.+.+|+|.. ..+++|+.|+ +++|+.+. +.++..+.+-|.|.++++++. ..+++||
T Consensus 146 -~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWD 223 (487)
T KOG0310|consen 146 -QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWD 223 (487)
T ss_pred -EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence 57889999999999999964 5778888777 59999754 456778888899999988765 5799999
Q ss_pred ---CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 162 ---NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 162 ---~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
.++.+..+. |...++|+.+..++..|++|+-|+.|++||+.+.+.+..+ ...++|.+++.+|+++.++.|..+|
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee--ecccceeeEEecCCCceEEEecccc
Confidence 233444444 7788999999999999999999999999998887776555 4678999999999999999999999
Q ss_pred eEEEEE
Q psy16005 238 KVVLYR 243 (248)
Q Consensus 238 ~i~vw~ 243 (248)
.+.+-+
T Consensus 302 lv~~rr 307 (487)
T KOG0310|consen 302 LVSIRR 307 (487)
T ss_pred eeeeeh
Confidence 887653
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-28 Score=170.74 Aligned_cols=230 Identities=15% Similarity=0.193 Sum_probs=184.6
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
+..+.. +...+..+.|......++.++ |.+|+..++.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++|
T Consensus 49 ~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLW 127 (311)
T KOG1446|consen 49 VKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLW 127 (311)
T ss_pred eeEeec-ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEee
Confidence 334433 334566777776666666654 7899999999999999999999999999999988999999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC---------------CCCCceeEeCCCCCEEE
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI---------------DYEPSSISLDHEHGLVA 149 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~---------------~~~~~~~~~~~~~~~~~ 149 (248)
|++..+..-...+ ..-...+|+|+|-.+|++... .++++|++. ..+.+.+.|+|+|+.++
T Consensus 128 DlR~~~cqg~l~~----~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 128 DLRVKKCQGLLNL----SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred EecCCCCceEEec----CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 9997765422222 233457899999999998866 679999863 23456889999999999
Q ss_pred EEcCCCeEEEEE--CCceeeeecccCC----CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 150 VGGADSKISIVE--NGAKVSSLPIDYE----PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~~~~~----~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
.+...+.+++.| .|.....+..... +...+|+||++++++|+.||+|.+|++++++.+..+...+.+++.++.|
T Consensus 204 lsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f 283 (311)
T KOG1446|consen 204 LSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF 283 (311)
T ss_pred EEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc
Confidence 999999999999 7777777664433 2478899999999999999999999999999888777558899999999
Q ss_pred cCCCcEEEEEcCCCeEEEEECC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|.-..+++++ ..+.+|=..
T Consensus 284 nP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 284 NPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred CCceeeeeecC--ceEEEEecc
Confidence 99766666664 477777543
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=190.24 Aligned_cols=234 Identities=14% Similarity=0.132 Sum_probs=196.9
Q ss_pred cceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEE
Q psy16005 5 NKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR 83 (248)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 83 (248)
.+..+.++.- ..-+|.+..|-+.-+.+++|+ |..|+||+..+++.+..+..|.+-|.+++.+|.-.+++++|.|-+|+
T Consensus 44 tqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 44 TQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred cceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEE
Confidence 3334444432 446788888988899999998 88999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCC--CEEE
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEH--GLVA 149 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~--~~~~ 149 (248)
+||.+.+- .+...+.+|...|.+++|+| |.+.+++++-|+ +++|.+.. ...+.++.+-+.| .+++
T Consensus 123 lW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 123 LWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EeeccCce-eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99998653 35688999999999999999 678899998666 59999853 4567888887644 6999
Q ss_pred EEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 150 VGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
+|+.|..+++|| +..+++++. |...+..+.|+|.-.++++|++||+++||+..+-+....+.. .-+.+.+++-.+.
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKG 280 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-CCceEEEEeecCC
Confidence 999999999999 667788887 566789999999999999999999999999999887666553 3567999998888
Q ss_pred CcEEEEEcCCCeEEE
Q psy16005 227 NEYLVASDAHRKVVL 241 (248)
Q Consensus 227 ~~~l~~~~~d~~i~v 241 (248)
+..++.|...|.|.+
T Consensus 281 ~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 281 DGKIAVGFDEGSVTV 295 (794)
T ss_pred CCeEEEeccCCcEEE
Confidence 888888876666543
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=188.89 Aligned_cols=228 Identities=12% Similarity=0.187 Sum_probs=185.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
..|.+.+..+.|-++...|++++ |..|++|+....+ ....+.+..++|+++.|.++++.+++++.|+.+++|++...
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 45889999999999988999987 9999999987665 56677788899999999999999999999999999999988
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc--------------------------------------
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP-------------------------------------- 131 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~-------------------------------------- 131 (248)
+.. .++.+|.+.|.++.|......+++++.+.. +.|++.
T Consensus 252 r~~--~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 252 RLR--HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhh--hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEec
Confidence 854 678889999999999876666777765543 555542
Q ss_pred ----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cceeeeec-----ccCCCceEEEcCCCCEEEEEcCCC
Q psy16005 132 ----------IDYEPSSISLDHEHGLVAVGGADSKISIVEN--GAKVSSLP-----IDYEPSSISLDHEHGLVAVGGADS 194 (248)
Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~~~d~ 194 (248)
.++.++++..++++..+.+++.|.++.+.|. .+....+. .....+.+.|||++.|+++|+.||
T Consensus 330 Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 330 RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred cCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC
Confidence 2345667777777777777777777777772 22333332 233467889999999999999999
Q ss_pred cEEEEEcCCCCCCCcccccCCc-CeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 195 KVHIYELNNKSLSPKAELDHLG-PVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.|+||++.++++.......+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 410 sv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 410 SVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999987776655544 799999999999999999999999993
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=181.85 Aligned_cols=225 Identities=16% Similarity=0.192 Sum_probs=198.9
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+..+|.|+.||.|...+++|+ ||.|++|.+.+|.+++.+. .|+..|+|+.||.|+..+++++.|.++++.-+++|+.+
T Consensus 262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL 341 (508)
T ss_pred cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence 567899999999999999998 9999999999999999886 89999999999999999999999999999999999965
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCC-CCEEEEEcCCCeEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHE-HGLVAVGGADSKISI 159 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 159 (248)
..+.+|...|+...|++||.++++++.|+ +++|+... +..+..+..-|. ...++++...+++++
T Consensus 342 --KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 342 --KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred --HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 78899999999999999999999999887 49999753 344556655554 457888999999999
Q ss_pred EE-CCceeeeeccc----CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 160 VE-NGAKVSSLPID----YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 160 ~~-~~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
.+ .|+.++.+... ....+.+.||.|.++.+.++|+.++.|...+++....+. -|...|..++-+|..+.|++-+
T Consensus 420 mn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqNllAsYs 498 (508)
T KOG0275|consen 420 MNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQNLLASYS 498 (508)
T ss_pred EeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-cccccccccccCcccchhhhhc
Confidence 99 78888877643 345678899999999999999999999999999866554 6888899999999999999999
Q ss_pred CCCeEEEEE
Q psy16005 235 AHRKVVLYR 243 (248)
Q Consensus 235 ~d~~i~vw~ 243 (248)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999995
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=179.86 Aligned_cols=226 Identities=16% Similarity=0.247 Sum_probs=193.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
....+.++...|..+.+++|+ |..+.++|..+++.+..+++|...|+.+.++|+...+++++.|..|+||.......
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 345678888888877888887 88999999999999999999999999999999999999999999999999887663
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEE-EccC------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVS-SLPI------------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
......|..+|+.+..+|.|.||+++++++...+ +++. +-..++.+|+|||.++.+|..|+.+++||
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 3567789999999999999999999999987443 3322 22367889999999999999999999999
Q ss_pred --CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 162 --NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 162 --~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
.+.....++ +..++..++|+.+|-||+++++|+.|++||++..+....+.......+.++.|.+.|++|+.++.|=.
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence 334444554 56678999999999999999999999999999988777776665567999999999999999988777
Q ss_pred EEEEE
Q psy16005 239 VVLYR 243 (248)
Q Consensus 239 i~vw~ 243 (248)
|++++
T Consensus 456 Vy~~~ 460 (506)
T KOG0289|consen 456 VYICK 460 (506)
T ss_pred EEEEe
Confidence 77666
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=161.94 Aligned_cols=228 Identities=18% Similarity=0.242 Sum_probs=176.0
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecC------CCc-----e----eeeeecCCcceEEEEECcCCcEEEEEccCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE------NPA-----I----SDIYTEHSCAVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~------~~~-----~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 80 (248)
...|.+++|+|.|.+.++|+ ..+++|-... .+. + .+.-+.|.+.|.|.+|+|+|++|++|+.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 45789999999999999998 6677765322 111 1 122346889999999999999999999999
Q ss_pred eEEEEECCCCcee---eeeeccCCCCCeeEEEEecC----CCEEEEEeCCcEEEEEccCCCCC--c--------ee-EeC
Q psy16005 81 KVRIWDTVNKEHI---LKNEFHPIGGPIKDIAWSPD----NQRMISIVENGAKVSSLPIDYEP--S--------SI-SLD 142 (248)
Q Consensus 81 ~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~~i~~~~~~~~~--~--------~~-~~~ 142 (248)
+|++...+..... ...++..|.+.|..++|..+ +..|++++.+..+||..+..... . -+ -++
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys 191 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS 191 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE
Confidence 9999876543211 23466778999999999754 46778887777777765432211 1 11 234
Q ss_pred CCCCEEEEEcCCCeEEEEECC--ceeeeecc--------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc
Q psy16005 143 HEHGLVAVGGADSKISIVENG--AKVSSLPI--------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL 212 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~--------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 212 (248)
-++-.+++|++|.+|++||.+ ..+..+.. ...+.+++..|.|++|++|-.|.+..+||++.++.+..+.
T Consensus 192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~- 270 (350)
T KOG0641|consen 192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH- 270 (350)
T ss_pred ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-
Confidence 467789999999999999943 34444432 1346789999999999999999999999999999987776
Q ss_pred cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|...|.++.|||...||++++.|.+|++-|+.
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 899999999999999999999999999999875
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=194.31 Aligned_cols=228 Identities=15% Similarity=0.225 Sum_probs=199.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc---CCcEEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP---SGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.+-.+.+++.||+|++||+|. .|+++||++...+....+..|...|.|+.|+. ..++||+++.|..|.|+|+...-
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 345689999999999999998 89999999999998888999999999999986 45889999999999999997654
Q ss_pred eeeeeeccCCCCCeeEEEEecCC--CEEEEEeCCcEEEEEccC----------------CCCCceeEeCCCCCEEEEEcC
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDN--QRMISIVENGAKVSSLPI----------------DYEPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~i~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 153 (248)
. ....+.+|...|+++.|...| ..+++++.|...+++... ......++..|..++++++++
T Consensus 538 ~-l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 538 D-LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred c-hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 3 447888999999999998877 778888888766555421 234567889999999999999
Q ss_pred CCeEEEEE--CCceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 154 DSKISIVE--NGAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
|..|++|+ .++..+.++. +...--+..+|.|-|+++.+.|.++.++|..+++++.+.. +|...|+.+.|.+|-
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDC 695 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-Ccchheeeeeecccc
Confidence 99999999 7777777763 3456678899999999999999999999999999988777 999999999999999
Q ss_pred cEEEEEcCCCeEEEEECC
Q psy16005 228 EYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~ 245 (248)
+.|++.+.||.|.||.+.
T Consensus 696 kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhheeecCCceEEEEECc
Confidence 999999999999999985
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=167.14 Aligned_cols=225 Identities=15% Similarity=0.237 Sum_probs=189.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|...|..++.+.|+..+++++ |..+.+||+.+|+..+.+.+|.+.|+.++|+.+...+++|+.|.++++||-++....
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 5778899999999999998876 999999999999999999999999999999999999999999999999999988776
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--C
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------DYEPSSISLDHEHGLVAVGGADSKISIVE--N 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~ 162 (248)
+.+.+....+.|.++..+ +..+++++-|| ++.|+++. ..+++++.++++++..++++-++++++.| +
T Consensus 137 PiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred ccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccch
Confidence 767787778899988875 56788888776 59999874 56899999999999999999999999999 7
Q ss_pred CceeeeecccCC---CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC-eEEEEEcCCCcEEEEEcCCCe
Q psy16005 163 GAKVSSLPIDYE---PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP-VTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 163 ~~~~~~~~~~~~---~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d~~ 238 (248)
|+.+..+..+.. -...+++.....++.|++||.|++||+.....+..+. .+... |.++.++|....++++.. +.
T Consensus 215 GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~~~v~v~dl~~hp~~~~f~~A~~-~~ 292 (307)
T KOG0316|consen 215 GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VVSTVIVTDLSCHPTMDDFITATG-HG 292 (307)
T ss_pred hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cCCceeEEeeecccCccceeEecC-Cc
Confidence 777776654332 2345666677799999999999999999988876665 34444 899999999887777754 44
Q ss_pred EEEEE
Q psy16005 239 VVLYR 243 (248)
Q Consensus 239 i~vw~ 243 (248)
+..|.
T Consensus 293 ~~~~~ 297 (307)
T KOG0316|consen 293 DLFWY 297 (307)
T ss_pred eecee
Confidence 55554
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=183.69 Aligned_cols=232 Identities=15% Similarity=0.181 Sum_probs=191.2
Q ss_pred ecccccccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.+..+ .+|...|.|++=+|.. ..+++|+ ||.|++||+.+.++...+..|.+.|..+++.. ..+++++.|.+|+.|
T Consensus 58 Fv~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 58 FVGSL-DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred chhhc-cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 44566 6799999999999988 7788887 99999999999999999999999999999986 678999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCc----------eeEeCCCC-CEEEEEcCC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPS----------SISLDHEH-GLVAVGGAD 154 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~ 154 (248)
-++.. ....+.+ +..+..+.-+..+..+++++ ..+.||+.....++. ++.++|-. ..|+++..|
T Consensus 135 k~~~~---p~~tilg-~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 135 KIDGP---PLHTILG-KSVYLGIDHHRKNSVFATCG-EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eccCC---cceeeec-cccccccccccccccccccC-ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 98763 1123322 45566666655555555554 457999987766654 44555543 477788899
Q ss_pred CeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 155 SKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 155 ~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
+.|.+|| .+.+++.+......+.++|+|.+-.+++|++|..++.||++.-+.......+|.+.|.++.|||.|+-+++
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 9999999 66777888888889999999988899999999999999999887766666789999999999999999999
Q ss_pred EcCCCeEEEEECCCC
Q psy16005 233 SDAHRKVVLYRVPDF 247 (248)
Q Consensus 233 ~~~d~~i~vw~~~~~ 247 (248)
|+.|.+|+||.++.+
T Consensus 290 gsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHG 304 (433)
T ss_pred ccccceEEEeecCCC
Confidence 999999999998765
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=170.77 Aligned_cols=232 Identities=15% Similarity=0.239 Sum_probs=182.4
Q ss_pred cccccccCCcEEEEeCCCCCE-EEEeC-CcEEEEEecCC-Ccee-eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKN-FLYTN-GNSVIIRNIEN-PAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~-l~~~~-~~~v~v~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
.++......|.+++|||.... +++++ |++|++|+++. +... +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 456667789999999995544 44566 99999999986 3332 34457899999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCC--EEEEEeCCc-EEEEEccCCCCCceeE-------eCCCCCEEEEEcCCCe
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQ--RMISIVENG-AKVSSLPIDYEPSSIS-------LDHEHGLVAVGGADSK 156 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~-~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 156 (248)
+.+++. ..+..|.++|..+.|-+... .|++++-|+ ++.||.+...++..+. .+-...+++++..++.
T Consensus 101 L~S~Q~---~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 101 LASGQV---SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERH 177 (347)
T ss_pred ccCCCe---eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCc
Confidence 999964 46778999999999987655 889999776 5999998766555443 3334568889999999
Q ss_pred EEEEECCcee-----eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-cCC---------cCeEEE
Q psy16005 157 ISIVENGAKV-----SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHL---------GPVTDC 221 (248)
Q Consensus 157 i~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~---------~~v~~~ 221 (248)
|.+|+..... ..-++...++|++.-+|....+.|+-+|.+.|..+..+.....+.. -|. -.|+++
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 9999943322 2234567789999999998889999999999999887633222221 132 257889
Q ss_pred EEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 222 SFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 222 ~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|+|.-..|+++++||++.+||-+
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeecccceEEEecCCceEEEecch
Confidence 999999999999999999999953
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=188.25 Aligned_cols=211 Identities=13% Similarity=0.249 Sum_probs=158.6
Q ss_pred ccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCc--------eeeeeecCCcceEEEEECcCCcE-EEEEccCCeE
Q psy16005 14 RTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPA--------ISDIYTEHSCAVNVAKYSPSGFY-IASGDISGKV 82 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i 82 (248)
.+|.+.|.+++|+|+ +++|++|+ |+.|++||+.++. ....+.+|...|.+++|+|++.. |++++.|++|
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 358899999999997 78898887 9999999997642 23456789999999999998865 5789999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCCCc----------e-----eEeCCCCC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYEPS----------S-----ISLDHEHG 146 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~~----------~-----~~~~~~~~ 146 (248)
++||+++++.. ..+. |...|.+++|+|+|+.|++++.++ +++|+++....+. . ..+++++.
T Consensus 151 rIWDl~tg~~~--~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 151 NIWDIENEKRA--FQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred EEEECCCCcEE--EEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 99999988754 3333 457899999999999999888665 6999987432211 1 12347888
Q ss_pred EEEEEcCCC----eEEEEEC---CceeeeecccCCCceE--EE-cCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCc
Q psy16005 147 LVAVGGADS----KISIVEN---GAKVSSLPIDYEPSSI--SL-DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLG 216 (248)
Q Consensus 147 ~~~~~~~~~----~i~~~~~---~~~~~~~~~~~~~~~~--~~-s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 216 (248)
++++++.++ .|++||. .+.+..+.++.....+ .+ .+++.++++|..|+.|++|++..+.........+..
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~ 307 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCS 307 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCC
Confidence 888877664 7999993 3455555554443332 33 445889999999999999999876543222223667
Q ss_pred CeEEEEEcCCC
Q psy16005 217 PVTDCSFSPSN 227 (248)
Q Consensus 217 ~v~~~~~s~~~ 227 (248)
+..+++|.|..
T Consensus 308 p~~g~~f~Pkr 318 (568)
T PTZ00420 308 PFRSFGFLPKQ 318 (568)
T ss_pred CccceEEcccc
Confidence 88899999964
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=172.26 Aligned_cols=194 Identities=14% Similarity=0.250 Sum_probs=163.9
Q ss_pred eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEE
Q psy16005 51 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSS 129 (248)
Q Consensus 51 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~ 129 (248)
...+.+|++.|..+.|+|+|..||+|+.|..|.+|++.... .....+.+|.++|..+.|.+|+..+++++.|. ++.||
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 34567999999999999999999999999999999975432 23356679999999999999999999999887 49999
Q ss_pred ccCCCCCce----------eEeCCCC-CEEEEEcCCCeEEEEECC--ceeeeecccCCCceEEEcCCCCEEEEEcCCCcE
Q psy16005 130 LPIDYEPSS----------ISLDHEH-GLVAVGGADSKISIVENG--AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKV 196 (248)
Q Consensus 130 ~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v 196 (248)
.+.+..+.. +....-| .++.+++.|+++++||.+ ..++.++...+++++.|..++..+.+|+-|+.|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 986655432 2212222 467789999999999944 456667778889999999999999999999999
Q ss_pred EEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 197 HIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++||++.+.....+. +|..+|+.+..+|+|.++.+-+.|.++++||++.
T Consensus 199 kvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred eeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 999999988876665 8999999999999999999999999999999874
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=179.28 Aligned_cols=202 Identities=16% Similarity=0.234 Sum_probs=170.5
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-----
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN----- 89 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----- 89 (248)
-.+++.|++-+|+|.+|+.|. .+.+++|.+.+|.++..+..|-..|+|+.|+-|+.+|+||+.||.|.+|.+..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 457899999999999999995 99999999999999999999999999999999999999999999999998642
Q ss_pred --CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCce
Q psy16005 90 --KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAK 165 (248)
Q Consensus 90 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~ 165 (248)
........+..|.-+|+++...+.| -..++++++.|.++++|| .+..
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg-----------------------------~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGG-----------------------------TNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCC-----------------------------ccceEEEecCCceEEEEEecccee
Confidence 2223445667788888887776543 134778889999999999 7888
Q ss_pred eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--C-------------CcccccCCc--CeEEEEEcCCCc
Q psy16005 166 VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--S-------------PKAELDHLG--PVTDCSFSPSNE 228 (248)
Q Consensus 166 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--~-------------~~~~~~~~~--~v~~~~~s~~~~ 228 (248)
+..+..+..+.+++.+|-++.+++|+++|.|.+.++.+... . .....+|.+ .|+|++.+-||.
T Consensus 211 Llti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt 290 (476)
T KOG0646|consen 211 LLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT 290 (476)
T ss_pred eEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence 88888999999999999999999999999999988754320 0 011236776 999999999999
Q ss_pred EEEEEcCCCeEEEEECCC
Q psy16005 229 YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 229 ~l~~~~~d~~i~vw~~~~ 246 (248)
.|++|+.||+++|||+.+
T Consensus 291 lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred EEEeeCCCCCEEEEecch
Confidence 999999999999999865
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=175.69 Aligned_cols=231 Identities=16% Similarity=0.208 Sum_probs=188.6
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee-----------------ee-ecCCcceEEEEECcCCcEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD-----------------IY-TEHSCAVNVAKYSPSGFYIA 74 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~-----------------~~-~~~~~~v~~~~~s~~~~~l~ 74 (248)
..|.-++++++++|++++.++++ +++|.-|++.+++..+ .- +.|...+.+++.|+||++|+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 45888999999999999999998 9999999988765220 01 26788899999999999999
Q ss_pred EEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------CCCCCceeEeCC
Q psy16005 75 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP----------IDYEPSSISLDH 143 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~----------~~~~~~~~~~~~ 143 (248)
+|+.|..|.||+.++.+.+ ..+.+|.+.|.+++|-.....+++++.|. +++|+++ ++..+..+....
T Consensus 219 tgg~d~~v~Iw~~~t~ehv--~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTLEHV--KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred ecCCCceEEEecCcccchh--hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence 9999999999999999854 66889999999999998777787777555 6999975 345566666666
Q ss_pred CCCEEEEEcCCCeEEEEECCc--eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC-------
Q psy16005 144 EHGLVAVGGADSKISIVENGA--KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH------- 214 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------- 214 (248)
-++.+-+|+.|+++++|+... ++....+...+.|++|-.+ ..+++|+.+|.|.+|++.+.+++.....+|
T Consensus 297 reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~ 375 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD 375 (479)
T ss_pred ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence 777888888999999999433 3333345567888888654 589999999999999999888765544333
Q ss_pred ----CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 215 ----LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 215 ----~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
...|++++..|...++++|+.+|.|++|.+.++
T Consensus 376 ~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 376 PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 237999999999999999999999999998765
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=171.89 Aligned_cols=197 Identities=15% Similarity=0.244 Sum_probs=167.9
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC------Cc----------eeeeeeccCCCCCeeEEEEecCCC
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN------KE----------HILKNEFHPIGGPIKDIAWSPDNQ 115 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~----------~~~~~~~~~~~~~v~~~~~~~~~~ 115 (248)
..+..|+.++.+.+|+|||.++++|+.|..|+|.|++. .+ ......+..|.++|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34668999999999999999999999999999999861 11 122355677999999999999999
Q ss_pred EEEEEeCCcE-EEEEccC------------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeee------cccCCCc
Q psy16005 116 RMISIVENGA-KVSSLPI------------DYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSL------PIDYEPS 176 (248)
Q Consensus 116 ~l~~~~~~~~-~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~ 176 (248)
.|++++.|+. +++++.. -..+.++.|+|.|.++++|.+...+++||........ .+...++
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 9999998875 9999753 3568899999999999999999999999943322222 2456689
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC-cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL-GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++.+++.+++.++|+.||.|+|||--+++++..+...|. ..|.+..|..+|+|+++.+.|..+++|++.+++
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999999999999999999999999999999888776774 569999999999999999999999999998874
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=172.25 Aligned_cols=230 Identities=16% Similarity=0.202 Sum_probs=182.6
Q ss_pred ccccCCcEEEEeCCCCC---EEEEeC-CcEEEEEecCCCcee----eeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 14 RTQRGQPIVLGGDPKGK---NFLYTN-GNSVIIRNIENPAIS----DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~---~l~~~~-~~~v~v~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.+|.++|.+++|.-... .+++++ |.++++|..+.++.. ..-++|...|.+++..++|..+++||.|.+++||
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiW 220 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIW 220 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeec
Confidence 46889999777754333 477776 999999998876532 3334999999999999999999999999999999
Q ss_pred ECCCC-----------------------ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC--------
Q psy16005 86 DTVNK-----------------------EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-------- 133 (248)
Q Consensus 86 d~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-------- 133 (248)
+.++. ...+...+.+|..+|.++.|++ ...+++++-|. ++.||+...
T Consensus 221 s~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 221 SVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT 299 (423)
T ss_pred ccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec
Confidence 93211 1123356789999999999998 67788888766 599998654
Q ss_pred -CCCceeEeCCCCCEEEEEcCCCeEEEEECCce------eeeecccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCC
Q psy16005 134 -YEPSSISLDHEHGLVAVGGADSKISIVENGAK------VSSLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~ 205 (248)
....++.++|..+++++|+.|..+++||.+.. ...+.|..-+.++.|+|... .|++|+.|+++++||+++.+
T Consensus 300 ~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 300 NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 55678899999999999999999999993321 12234566789999999655 78889999999999999988
Q ss_pred CCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 206 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.......+|...|.++.|. ++..+++|+.|++|+++.-.
T Consensus 380 ~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 380 APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 4444444899999999997 56789999999999998754
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=170.81 Aligned_cols=230 Identities=18% Similarity=0.243 Sum_probs=202.4
Q ss_pred cccccCCcEEEEeCC---CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 13 PRTQRGQPIVLGGDP---KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~---~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
-.+|..+|..++||| +|-+|++++ |+.-.+.+-++|.-+.++.+|++.|.+..++.+....|+++.|-+-++||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 357899999999986 787888887 9998898989999999999999999999999998889999999999999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
++..+ ..+ .|+..|..++|+.|.++|++++.+.+ ++++++. ...++.+.|....+.++++..|++
T Consensus 90 tgdel--hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 90 TGDEL--HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhh--hhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99865 333 47889999999999999999998886 8999864 345677888888889999999999
Q ss_pred EEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 157 ISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 157 i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
|++|| ++..++.+....+++++.++++|++|.++. .+.|.+||..+...+.... -...|.+.+.+|+...+++|+
T Consensus 167 VRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGG 243 (334)
T ss_pred eEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc--CccccccccccCCCceEEecC
Confidence 99999 888999999999999999999999887765 5679999999988766554 445689999999999999999
Q ss_pred CCCeEEEEECCCCC
Q psy16005 235 AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 ~d~~i~vw~~~~~~ 248 (248)
.|..++.||..+++
T Consensus 244 ed~~~~kfDy~Tge 257 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGE 257 (334)
T ss_pred cceEEEEEeccCCc
Confidence 99999999999885
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=165.01 Aligned_cols=227 Identities=14% Similarity=0.166 Sum_probs=174.6
Q ss_pred cEEEEeCC--CCCEEEEe-------CCcEEEEEecCCCceeeeee--cCCcceEEEEECcC-CcEEEEEccCCeEEEEEC
Q psy16005 20 PIVLGGDP--KGKNFLYT-------NGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPS-GFYIASGDISGKVRIWDT 87 (248)
Q Consensus 20 v~~~~~s~--~~~~l~~~-------~~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~ 87 (248)
=.++.||| .+++.+++ +.|.+.|.++..++-+.... .-.+.+..++|+++ .+.+++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 35789999 33333322 36899999986444443332 44678999999995 577889999999999997
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecC-CCEEEEEeCCc-EEEEEccCCC----------CCceeEeCCC-CCEEEEEcCC
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPD-NQRMISIVENG-AKVSSLPIDY----------EPSSISLDHE-HGLVAVGGAD 154 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~-~~i~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~ 154 (248)
..... +...+++|+..|.++.|++. .+.+++++-|+ +++|+...+. .+....|+|. .+++++++.|
T Consensus 91 ~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCc-chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 65443 44678899999999999984 45566666555 6999976443 3456678874 6799999999
Q ss_pred CeEEEEE---CCceeeeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC-cE
Q psy16005 155 SKISIVE---NGAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN-EY 229 (248)
Q Consensus 155 ~~i~~~~---~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 229 (248)
+.+++|| .++.+....+..++.++.|+. +...+++|+.|+.|+.||+++-+.......+|.-.|+.++|||.. ..
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999 555555334556889999987 666999999999999999998776555556899999999999985 47
Q ss_pred EEEEcCCCeEEEEECCCC
Q psy16005 230 LVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~~ 247 (248)
|++++.|-+++|||....
T Consensus 250 LaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQ 267 (311)
T ss_pred hhhccccceEEecccccc
Confidence 889999999999998743
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=181.52 Aligned_cols=234 Identities=17% Similarity=0.246 Sum_probs=181.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCce----eeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAI----SDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~----~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
+|...|.++++.|.|..|++|+ |..|++||+..... .+.+. .....|.++.|++.|..|++.+.....+|+|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 4667899999999999999999 99999999976432 22232 345679999999999999888888899999976
Q ss_pred CCceeee----------eeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEccC----------------CCCCceeE
Q psy16005 89 NKEHILK----------NEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLPI----------------DYEPSSIS 140 (248)
Q Consensus 89 ~~~~~~~----------~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~~----------------~~~~~~~~ 140 (248)
..+.... ....+|...+++.+|+|+. ..+++++.|+ +++|++.. .-.++.++
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence 5443211 2246789999999999965 4667777776 59999853 23467889
Q ss_pred eCCCCCEEEEEcCCCeEEEEECCcee----eee--ccc--CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc
Q psy16005 141 LDHEHGLVAVGGADSKISIVENGAKV----SSL--PID--YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL 212 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~--~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 212 (248)
|+++++++|+|..||.|.+|+.+... ..+ .|. ..++|+.||+||++|++-+.|+++++||++..+.......
T Consensus 325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 325 WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhc
Confidence 99999999999999999999954321 111 122 3689999999999999999999999999998765433222
Q ss_pred c--CCcCeEEEEEcCCCcEEEEEcC------CCeEEEEECCCCC
Q psy16005 213 D--HLGPVTDCSFSPSNEYLVASDA------HRKVVLYRVPDFE 248 (248)
Q Consensus 213 ~--~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~~~~ 248 (248)
+ ..-+-+.++|||+.++|++|.+ .|++.+||..+++
T Consensus 405 gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 405 GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 2 3345678999999999999853 4789999987653
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=181.30 Aligned_cols=241 Identities=16% Similarity=0.241 Sum_probs=186.2
Q ss_pred CCcCcceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee------------eeecCCcceEEEEEC
Q psy16005 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD------------IYTEHSCAVNVAKYS 67 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~------------~~~~~~~~v~~~~~s 67 (248)
|+.+.+. +..+......+|.+++|++.|..|++.+ ....+|+|-+..+... ..++|...++|.+|+
T Consensus 199 Mdas~~~-fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 199 MDASMRS-FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWH 277 (641)
T ss_pred ccccchh-hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccc
Confidence 3344433 4555555667899999999998877765 7788999966543322 235899999999999
Q ss_pred cC-CcEEEEEccCCeEEEEECCCCceeee----eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------
Q psy16005 68 PS-GFYIASGDISGKVRIWDTVNKEHILK----NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP---------- 131 (248)
Q Consensus 68 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~---------- 131 (248)
|+ ...++|++.||++++||+...+.... ....+..-++...+|++||+.++++..+| +.+|+..
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence 95 46789999999999999986543211 11123345789999999999999998777 5999963
Q ss_pred -----CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeee------ecccCCCceEEEcCCCCEEEEEcC------CC
Q psy16005 132 -----IDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSS------LPIDYEPSSISLDHEHGLVAVGGA------DS 194 (248)
Q Consensus 132 -----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~~~------d~ 194 (248)
.+..++++.|+++|++|++-+.|+++++||..+.... +...++-+.++|||+.++|++|.. .|
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCc
Confidence 1346899999999999999999999999995543332 234556688999999999999863 46
Q ss_pred cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 195 KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.+.+||..+...+..+... ...|..+.|+|.-+.|+.++.||.+++|-
T Consensus 438 ~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCceEEEE
Confidence 7999999998887666543 67789999999999999999999999873
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=192.69 Aligned_cols=235 Identities=18% Similarity=0.252 Sum_probs=186.0
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC---CcEEEEEecCC------------CceeeeeecCCcceEEEEECcCCcEEEEE
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIEN------------PAISDIYTEHSCAVNVAKYSPSGFYIASG 76 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 76 (248)
+-.++...|.+++.+|||..+++|+ |+.+.+|+.+. .+.+.....|.+.|.|+.|+|||++||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 4455667799999999999999986 78888998753 22344566899999999999999999999
Q ss_pred ccCCeEEEEECCC----------Cc------eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc--------
Q psy16005 77 DISGKVRIWDTVN----------KE------HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP-------- 131 (248)
Q Consensus 77 ~~dg~i~iwd~~~----------~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~-------- 131 (248)
+.|+.|.||+... +. ......+.+|...|..++|+|++.+|++++-|. +.+|+..
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence 9999999999872 00 113356778999999999999999999999665 6899864
Q ss_pred --CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc--eeeeecc-------cCCCceEEEcCCCCEEEEEcC----CCcE
Q psy16005 132 --IDYEPSSISLDHEHGLVAVGGADSKISIVENGA--KVSSLPI-------DYEPSSISLDHEHGLVAVGGA----DSKV 196 (248)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~-------~~~~~~~~~s~~~~~l~~~~~----d~~v 196 (248)
+...+..+.|+|-|+++++-+.|++|++|++.. ..+.+.- ......+.|||||.+|++... -..+
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 456688999999999999999999999999544 3333322 223467899999999998753 2368
Q ss_pred EEEEcCCCCCCCcccccCCcCeEEEEEcCC-----Cc------------EEEEEcCCCeEEEEECCCC
Q psy16005 197 HIYELNNKSLSPKAELDHLGPVTDCSFSPS-----NE------------YLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~d~~i~vw~~~~~ 247 (248)
.|.+-.+.+....+. +|.+++.+++|+|. .+ .+|+|+.|+.|.||.....
T Consensus 248 ~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred EEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 888887776544444 89999999999982 11 5688899999999987543
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=176.52 Aligned_cols=232 Identities=14% Similarity=0.221 Sum_probs=181.1
Q ss_pred ccccCCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCc----------eeeeeecCCcceEEEEECcC-CcEEEEEccCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPA----------ISDIYTEHSCAVNVAKYSPS-GFYIASGDISG 80 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~----------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 80 (248)
-.|.+.|+.+.+-|+...++++ + ++.++|||..+.. +-..+.+|...-.+++|++. .-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3588999999999988777664 3 8899999986421 11267799887889999994 45789999999
Q ss_pred eEEEEECCCCce-----eeeeeccCCCCCeeEEEEecCC-CEEEEEeCCcE-EEEEccC------------CCCCceeEe
Q psy16005 81 KVRIWDTVNKEH-----ILKNEFHPIGGPIKDIAWSPDN-QRMISIVENGA-KVSSLPI------------DYEPSSISL 141 (248)
Q Consensus 81 ~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~-~i~~~~~------------~~~~~~~~~ 141 (248)
+|++||+..... ..+..+.+|...|..++|++-. ..++++++++. .+||.+. ...+.+++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975432 3456778999999999999954 55666777765 9999984 345789999
Q ss_pred CCC-CCEEEEEcCCCeEEEEECC---ceeeeec-ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCC-------
Q psy16005 142 DHE-HGLVAVGGADSKISIVENG---AKVSSLP-IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSP------- 208 (248)
Q Consensus 142 ~~~-~~~~~~~~~~~~i~~~~~~---~~~~~~~-~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~------- 208 (248)
+|- +.+||+|+.|++|.+||.+ +++..+. +...+.++.|||... .||+++.|+.+.+||+..-....
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 985 4578899999999999944 3444544 567799999999655 88899999999999996532221
Q ss_pred ------cccccCCcCeEEEEEcCCCcE-EEEEcCCCeEEEEECC
Q psy16005 209 ------KAELDHLGPVTDCSFSPSNEY-LVASDAHRKVVLYRVP 245 (248)
Q Consensus 209 ------~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~vw~~~ 245 (248)
-...+|...|..+.|+|+..+ |++.+.|+.++||+..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 122369999999999999875 4667899999999976
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=185.16 Aligned_cols=200 Identities=12% Similarity=0.181 Sum_probs=145.4
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC----------cee---eeeecCCcceEEEEECc-CCcEEEEEccCCe
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP----------AIS---DIYTEHSCAVNVAKYSP-SGFYIASGDISGK 81 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~----------~~~---~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 81 (248)
...|.....++++..+++++ +.....|+...+ +.. ..+.+|.+.|.+++|+| ++++|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 34455566667755555554 445555654332 211 24678999999999999 8899999999999
Q ss_pred EEEEECCCCce-----eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 82 VRIWDTVNKEH-----ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 82 i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
|++||+.++.. .....+.+|...|.+++|+|++. +++++++.|+.
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~------------------------------~iLaSgs~Dgt 149 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM------------------------------NVLASAGADMV 149 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC------------------------------CEEEEEeCCCE
Confidence 99999976532 12245678888899999988642 24445666777
Q ss_pred EEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC-eEEEEEcCCCcEEEE
Q psy16005 157 ISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP-VTDCSFSPSNEYLVA 232 (248)
Q Consensus 157 i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~ 232 (248)
|++|| .++....+. +...+.+++|+|+|.+|++++.|+.|++||+++++.+.... +|.+. +..+.|.+++..+++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEE
Confidence 77777 344444454 45568999999999999999999999999999988755544 56554 457789999888876
Q ss_pred Ec----CCCeEEEEECCCC
Q psy16005 233 SD----AHRKVVLYRVPDF 247 (248)
Q Consensus 233 ~~----~d~~i~vw~~~~~ 247 (248)
++ .|+.|++||+++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred EecCCCCCCeEEEEeCCCC
Confidence 54 4799999999764
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=162.66 Aligned_cols=236 Identities=19% Similarity=0.202 Sum_probs=187.8
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC---ceeeeeecCCcceEEEEECc--CCcEEEEEccCCeE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP---AISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKV 82 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 82 (248)
+..+...|...|..+...--|+.|++++ |+.|+|+...+. +++.++.+|.++|..++|.. -|.+||++++||.|
T Consensus 3 ~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 3 MQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred ceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 3456677888899888888899999986 999999998764 45678899999999999965 79999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC-------------CCCceeEeCCC--
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID-------------YEPSSISLDHE-- 144 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~-------------~~~~~~~~~~~-- 144 (248)
.||.-++++.........|...|++++|.|. |-.|++++.|| +.+.+++.. ..+++++|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999998876666777889999999999985 56777777666 577666533 34677888775
Q ss_pred -C-----------CEEEEEcCCCeEEEEECCc----eeeeec-ccCCCceEEEcCCC----CEEEEEcCCCcEEEEEcCC
Q psy16005 145 -H-----------GLVAVGGADSKISIVENGA----KVSSLP-IDYEPSSISLDHEH----GLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 145 -~-----------~~~~~~~~~~~i~~~~~~~----~~~~~~-~~~~~~~~~~s~~~----~~l~~~~~d~~v~i~d~~~ 203 (248)
| +.|++|+.|..+++|+... ....+. |..-++.++|.|.- ..|++++.||.+.||..+.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 3 5699999999999998332 222233 44458899999954 4899999999999998773
Q ss_pred CCC--CCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 204 KSL--SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 204 ~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
... ..+++......+..+.||+.|..|+.++.|+++.+|.-
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 322 22333345678999999999999999999999999974
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=171.47 Aligned_cols=237 Identities=17% Similarity=0.199 Sum_probs=197.3
Q ss_pred ceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 6 KYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
..++..++ +|.-.|+.+.++|+...+++++ |..|+||.............|.++|+.+..+|.|.||++++.||+..+
T Consensus 251 ~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 251 NQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEE
Confidence 34555554 4888999999999999999987 999999998887777778899999999999999999999999999999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------CCCCCceeEeCCCCCEEEEEcC
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP----------IDYEPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 153 (248)
.|++++..+.+..-....-.+++.+|+|||..|.++..+++ ++|++. +..++..++|+.+|-+++++..
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 99999987755544333456899999999999999998886 999985 3466889999999999999999
Q ss_pred CCeEEEEECCce--eeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC--CCCcccccCCcCeEEEEEcCCC
Q psy16005 154 DSKISIVENGAK--VSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS--LSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 154 ~~~i~~~~~~~~--~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
|+.|++||.++. ..++.. ..++.++.|++.|.+|+.++.+=+|++++-.+.. .+..+. .|.+..+.+.|..+.
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFGEHA 488 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-hcccccceeeecccc
Confidence 999999995543 344443 3458999999999999999888777777755443 322232 577889999999999
Q ss_pred cEEEEEcCCCeEEEEEC
Q psy16005 228 EYLVASDAHRKVVLYRV 244 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~ 244 (248)
+++++++.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999998865
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-27 Score=184.37 Aligned_cols=225 Identities=17% Similarity=0.240 Sum_probs=187.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.++++..-+.++++|+ |.++++||..++++...+.+|.+.+.++...+ ..+++|+.|.+|++|+++++..
T Consensus 246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~ 323 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGAC 323 (537)
T ss_pred cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcce
Confidence 57999999999998788999998 99999999999999999999999999987754 5788899999999999999886
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
+ ..+.+|.++|.++..+ +.++++++.++ +++|+... ...+.++.+.+. ..+++|+.|+.|++||
T Consensus 324 l--~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 324 L--NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD 398 (537)
T ss_pred E--EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence 5 5566699999999997 78999999888 69999763 344556655555 8999999999999999
Q ss_pred --CC-ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 162 --NG-AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 162 --~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
.. +++..+..+..+. -.....+++|++++.|+.|++||..++++.......|...|..+++. ...+++++.||.
T Consensus 399 l~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~ 475 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGS 475 (537)
T ss_pred CCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCe
Confidence 33 4566666555443 23344578999999999999999999998877764367889988876 467888999999
Q ss_pred EEEEECCCCC
Q psy16005 239 VVLYRVPDFE 248 (248)
Q Consensus 239 i~vw~~~~~~ 248 (248)
+++||+++++
T Consensus 476 ~~l~dl~~~~ 485 (537)
T KOG0274|consen 476 VKLWDLRSGT 485 (537)
T ss_pred eEEEecccCc
Confidence 9999999874
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=181.90 Aligned_cols=197 Identities=21% Similarity=0.312 Sum_probs=164.6
Q ss_pred ceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC-CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-E
Q psy16005 49 AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-A 125 (248)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~ 125 (248)
+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. ++ +...+.+|..+|..++|+++|..+++++-|+ +
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc--eehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 45667889999999999999 889999999999999999987 44 4478899999999999999999999999777 4
Q ss_pred EEEEccC---------CCCCceeEeCCCC-CEEEEEcCCCeEEEEE--CCceeeeecc-cCCCceEEEcCCCCEEEEEcC
Q psy16005 126 KVSSLPI---------DYEPSSISLDHEH-GLVAVGGADSKISIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 126 ~i~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~--~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~ 192 (248)
++||... +..+.++.+.|++ +.+++|+.|+.|+.|| .++.++++.. -..+..+.|-++|+.+++.+.
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999764 4567899999998 8999999999999999 6666666653 456789999999999999999
Q ss_pred CCcEEEEEcCCCCCCC---------------------------------------------cccccC--CcCeEEEEEcC
Q psy16005 193 DSKVHIYELNNKSLSP---------------------------------------------KAELDH--LGPVTDCSFSP 225 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~---------------------------------------------~~~~~~--~~~v~~~~~s~ 225 (248)
|++++||+.+..-.+. ....+| .+.-..+.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 9999999876542110 011133 34567799999
Q ss_pred CCcEEEEEcCCCeEEEEECCCC
Q psy16005 226 SNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 226 ~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
||++|++|+.||.+.+||.++-
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred CCCeEEeecCCccEEEeechhh
Confidence 9999999999999999998763
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=158.53 Aligned_cols=227 Identities=19% Similarity=0.280 Sum_probs=180.8
Q ss_pred ccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 14 RTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.+|.+.|-.++|+|.. ..+++++ |..|++||...+++...+....+. ..+.|+|+|++++.++.|..|...|.++.+
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~ 139 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYK 139 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccc
Confidence 4677788889998854 4566665 899999999999999888655444 457899999999999999999999999877
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
.....++ ...+..++|+.++..++.....| +.|..++ ++....++.|+|+|+++|+|+.|..+.+|
T Consensus 140 ~~~~~~~---~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 140 IVNEEQF---KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eeehhcc---cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 5433333 45678889987777776665544 5665543 23445678899999999999999999999
Q ss_pred ECCce--eeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC-
Q psy16005 161 ENGAK--VSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH- 236 (248)
Q Consensus 161 ~~~~~--~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 236 (248)
|..+. ++.+ .++.++..+.||.||++||+|++|..|-|=++++|..+... .+.++-..|+|+|...+||.++.|
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI--~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI--PCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe--eccCCceeEEecCCCceeeEEecCC
Confidence 95553 3444 47889999999999999999999999999999999886554 588999999999999999887543
Q ss_pred --------CeEEEEECCC
Q psy16005 237 --------RKVVLYRVPD 246 (248)
Q Consensus 237 --------~~i~vw~~~~ 246 (248)
|.+++|-+.+
T Consensus 295 ~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 295 DGDSNREAGTVKIFGLSN 312 (313)
T ss_pred CCccccccceeEEecCCC
Confidence 5788876653
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=188.96 Aligned_cols=222 Identities=15% Similarity=0.245 Sum_probs=182.7
Q ss_pred cEEEEeCC-CCCEEEEeC-CcEEEEEecCC---CceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCcee
Q psy16005 20 PIVLGGDP-KGKNFLYTN-GNSVIIRNIEN---PAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 20 v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+..+.|+. +.++||+++ .|.|.+||+.. .++...+..|...++++.|++ ...+|++||.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 34566764 457888887 89999999987 556667889999999999998 5688999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEec-CCCEEEEEeCCcE-EEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSP-DNQRMISIVENGA-KVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~-~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
..+.+....|+.+.|+| .+.+++++.++|. ++||++. .+.+.++.|+|++.+||+|+.|+.+++|
T Consensus 170 --~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 170 --STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred --ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 55566778999999999 5778888888886 9999973 4678899999999999999999999999
Q ss_pred ECC----ceeeeecccCCCceEEEcCCCC-EEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC-CCcEEEE
Q psy16005 161 ENG----AKVSSLPIDYEPSSISLDHEHG-LVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP-SNEYLVA 232 (248)
Q Consensus 161 ~~~----~~~~~~~~~~~~~~~~~s~~~~-~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~ 232 (248)
+.+ ..+.++....++.++.|-|... .|++++ .|-.|+|||++..-.+......|...++.++|.. |-..+.+
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 933 3456666778899999999776 555554 4778999999998887777778999999999965 3457888
Q ss_pred EcCCCeEEEEE
Q psy16005 233 SDAHRKVVLYR 243 (248)
Q Consensus 233 ~~~d~~i~vw~ 243 (248)
++.||++..-.
T Consensus 328 ~sKD~tv~qh~ 338 (839)
T KOG0269|consen 328 CSKDGTVLQHL 338 (839)
T ss_pred ecCccHHHHhh
Confidence 99999876433
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=182.40 Aligned_cols=231 Identities=18% Similarity=0.207 Sum_probs=186.8
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC-ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
++..|....+.++|.|+|++|++++ |+.|++|+.... +....+..+...|.+++.. +.+|++|+.+++|.+|.+..
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 3346778899999999999998886 999999987665 4455554477888888774 45899999999999999988
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEc----------cCCCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSL----------PIDYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
++.- ..+....-++++++|+.+|++++.+++|. +++-++ .+..++.++.++|++++||+.+-||.++
T Consensus 86 ~~~~--~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 86 GEED--TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCcc--ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 8743 34455567899999999999999999876 466554 2567889999999999999999999999
Q ss_pred EEE--CCceeeeecc---------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCC
Q psy16005 159 IVE--NGAKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPS 226 (248)
Q Consensus 159 ~~~--~~~~~~~~~~---------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~ 226 (248)
+|+ .+.....+.. ......++|+|+|..+++.+.|+.|++|+..+.+....+... +...+..++|+|+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 999 3333333321 122467899999888899999999999999998876666544 3444999999999
Q ss_pred CcEEEEEcCCCeEEEEECCC
Q psy16005 227 NEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~~ 246 (248)
|+|||+++.||.|.|||+++
T Consensus 244 G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CcEEeeeccCCcEEEEeccc
Confidence 99999999999999999985
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-25 Score=151.30 Aligned_cols=239 Identities=14% Similarity=0.218 Sum_probs=188.4
Q ss_pred CcceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC--CCce---eeeeecCCcceEEEEECcC----CcEE
Q psy16005 4 SNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE--NPAI---SDIYTEHSCAVNVAKYSPS----GFYI 73 (248)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--~~~~---~~~~~~~~~~v~~~~~s~~----~~~l 73 (248)
+++.++..-..+|++.|.|.+|||+|+++++|+ |..|++..++ +.+. ...+.-|.+.|..++|-.+ +.+|
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence 344455555567999999999999999999998 8888876543 3322 2356689999999999653 4667
Q ss_pred EEEc-cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC-----------------C
Q psy16005 74 ASGD-ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-----------------Y 134 (248)
Q Consensus 74 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-----------------~ 134 (248)
++++ .|..|++-|-..++.. ..+.+|.+-|.++ ++-++-.+++++.+. +++|+++.+ .
T Consensus 156 ~s~gagdc~iy~tdc~~g~~~--~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQGF--HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred EecCCCcceEEEeecCCCCcc--eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence 7654 4667777787777754 6778899988776 455788999999887 499998643 3
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC---CCCC
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK---SLSP 208 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~---~~~~ 208 (248)
.+..++..|.|+++++|..|....+|| .++.++.+ ++...+.|+.|+|...++++++.|..|++-|+... ++..
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~ 312 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI 312 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce
Confidence 456788999999999999999999999 45555554 57778999999999999999999999999999753 2222
Q ss_pred cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 209 KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 209 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 313 ~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 313 MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2333588999999999999889999999999999874
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-26 Score=161.75 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=169.2
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCce------------------------------------eeee--
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAI------------------------------------SDIY-- 54 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~------------------------------------~~~~-- 54 (248)
.+|.+.|++++|+.||++|++++ |+.|++|+++.... +..+
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 46999999999999999999986 99999999864210 0000
Q ss_pred ---------------------ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC
Q psy16005 55 ---------------------TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113 (248)
Q Consensus 55 ---------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 113 (248)
+.|.-.+..+-...++++|++++.|..|.+|+++ |+.+ ..+......-+..+.+|+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L--~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL--QSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee--eeeccccccccceeeCCC
Confidence 0122233344444456789999999999999998 6644 344444455677889999
Q ss_pred CCEEEEEe-CCcEEEEEcc------------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc---------e
Q psy16005 114 NQRMISIV-ENGAKVSSLP------------------IDYEPSSISLDHEHGLVAVGGADSKISIVENGA---------K 165 (248)
Q Consensus 114 ~~~l~~~~-~~~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~ 165 (248)
|+++++++ .-.+++|..- +...+..++|+++.+.+++.+.||++++||+.- .
T Consensus 240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~ 319 (420)
T KOG2096|consen 240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI 319 (420)
T ss_pred CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence 99999887 3446777752 235577889999999999999999999999322 1
Q ss_pred eeeec-----ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 166 VSSLP-----IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 166 ~~~~~-----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
+...+ ....+..++++|+|+.|+++.. ..+++|..++++....+...|...|.+++|+++|+++++++ |..++
T Consensus 320 Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vr 397 (420)
T KOG2096|consen 320 LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVR 397 (420)
T ss_pred hhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeee
Confidence 22221 1334568999999999888764 46999999999888888777999999999999999999986 56777
Q ss_pred EEE
Q psy16005 241 LYR 243 (248)
Q Consensus 241 vw~ 243 (248)
++.
T Consensus 398 v~~ 400 (420)
T KOG2096|consen 398 VIR 400 (420)
T ss_pred eec
Confidence 764
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-26 Score=162.24 Aligned_cols=225 Identities=16% Similarity=0.264 Sum_probs=173.7
Q ss_pred cEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 20 PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
..|+.|++.|.+||.|. +|.|.|||+.+....+.+.+|..+|.+++||+||+.|+|+|.|..|.+||+..|..+....+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 77999999999999996 99999999999998899999999999999999999999999999999999999987655554
Q ss_pred cCCCCCeeEEEEecCCC--EEEEEeCCcEEEEEcc--------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 99 HPIGGPIKDIAWSPDNQ--RMISIVENGAKVSSLP--------------IDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~--~l~~~~~~~~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.++|....|+|..+ .+++--+....+-++. ......+..+++.|+++++|...|.+.+++
T Consensus 106 ---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 106 ---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred ---cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 58999999999543 3333333333333322 122334456889999999999999999999
Q ss_pred -CCceeeeeccc--CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC-------CCC--Ccccc-cCCcCeEEEEEcCCCc
Q psy16005 162 -NGAKVSSLPID--YEPSSISLDHEHGLVAVGGADSKVHIYELNNK-------SLS--PKAEL-DHLGPVTDCSFSPSNE 228 (248)
Q Consensus 162 -~~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~-------~~~--~~~~~-~~~~~v~~~~~s~~~~ 228 (248)
+-+.+..+... ..+..+.++..|+.|++-+.|..|+.|+++.- +.. ..++. -....=.+++||.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 44555555432 45788899999999999999999999998621 111 11110 1233446789999999
Q ss_pred EEEEEcC-CCeEEEEECCCC
Q psy16005 229 YLVASDA-HRKVVLYRVPDF 247 (248)
Q Consensus 229 ~l~~~~~-d~~i~vw~~~~~ 247 (248)
|+++++. ...++||.-..|
T Consensus 263 Yv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEEeccccceeEEEEecCCc
Confidence 9987764 578999987665
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=181.72 Aligned_cols=225 Identities=12% Similarity=0.162 Sum_probs=188.7
Q ss_pred EEEeC-CCCCEEEEeC-CcEEEEEecCCCc------eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 22 VLGGD-PKGKNFLYTN-GNSVIIRNIENPA------ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 22 ~~~~s-~~~~~l~~~~-~~~v~v~~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
++..+ |.+++|++|+ ||.|++|+..... ....++.|.+.|..+....+++.|+++|.|-+|++|+...+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 45554 4667799987 9999999986422 25567789999999999999999999999999999999877544
Q ss_pred eeeeccCCCCCeeEEEE-ecCCCEEEEEeCCc-EEEEEccCC---------------------CCCceeEeCCCCCEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAW-SPDNQRMISIVENG-AKVSSLPID---------------------YEPSSISLDHEHGLVAV 150 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~-~~i~~~~~~---------------------~~~~~~~~~~~~~~~~~ 150 (248)
....+..|.+.|.|+++ .++...+++++-|+ +.+|++... ..+.+++.++.+..++.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 55778899999999999 77788888888555 799998632 23567888889999999
Q ss_pred EcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 151 GGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 151 ~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
|+.++.+++|| .++.+..+. |...+..+..++||..+++++.||+|++||+...+++..+. .|...|+++..+|+-
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSF 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCCc
Confidence 99999999999 444444444 55668999999999999999999999999999999887765 688889999999999
Q ss_pred cEEEEEcCCCeEEEEECCCC
Q psy16005 228 EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~~ 247 (248)
..+++|+.||.|..=|+++.
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEecCCCCcEEecccCCc
Confidence 99999999999999888763
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-26 Score=173.36 Aligned_cols=219 Identities=18% Similarity=0.304 Sum_probs=181.0
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC-
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP- 100 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 100 (248)
-++|+ ..+.++.+.+..|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+ ..+..
T Consensus 182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGS 258 (484)
T ss_pred Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCC
Confidence 46677 556888888999999999998877666656889999999999999999999999999999887754 45555
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc-----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEEC---Cce
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVENG-AKVSSLP-----------IDYEPSSISLDHEHGLVAVGGADSKISIVEN---GAK 165 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ 165 (248)
|...|.+++|. +..+.+++.++ +..++++ +...+..+.|++++.++|+|+.|+.+.+||. ...
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 89999999997 66777887776 4667764 3456788999999999999999999999994 445
Q ss_pred eeeecccCCCceEEEcC-CCCEEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE--cCCCeEE
Q psy16005 166 VSSLPIDYEPSSISLDH-EHGLVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS--DAHRKVV 240 (248)
Q Consensus 166 ~~~~~~~~~~~~~~~s~-~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~ 240 (248)
.....+...+..++|+| ...+||+|+ .|+.|++||..+++.+.... -.+.|.+|.|++..+-|+++ -.++.|.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 55667888899999999 445888875 58999999999998876554 45789999999999877765 4568999
Q ss_pred EEECCCC
Q psy16005 241 LYRVPDF 247 (248)
Q Consensus 241 vw~~~~~ 247 (248)
||+..+.
T Consensus 415 lw~~ps~ 421 (484)
T KOG0305|consen 415 LWKYPSM 421 (484)
T ss_pred EEecccc
Confidence 9998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=164.96 Aligned_cols=225 Identities=14% Similarity=0.230 Sum_probs=165.8
Q ss_pred CCcEEEEeCCCCCEEE-EeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEE-ccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFL-YTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~-~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 94 (248)
..+.+++|+|+|+.++ ++. ++.+++||..+++....+..+.. +..++|+|+++.++++ +.++.+++||+.+.+.+.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 3467899999999775 444 78999999999888776655443 5678999999877654 568999999998876442
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEccC---------CCCCceeEeCCCCCEEEEE-cCCCeEEEEE-
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLPI---------DYEPSSISLDHEHGLVAVG-GADSKISIVE- 161 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~- 161 (248)
.+. +...+.+++|+|+++.++++..++ +..|+... ...+..+.++++++.++++ ..++.+++||
T Consensus 110 --~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 110 --EIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred --Eee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence 222 224468899999999999888764 34556432 2345678899999988654 4689999999
Q ss_pred -CCceeeeeccc--------CCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 162 -NGAKVSSLPID--------YEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 162 -~~~~~~~~~~~--------~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
.++.+..+... ..+..++++|++++++++ ..++.+.+||+++++..... .+...+.+++|+|+|++|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL--LVGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE--EeCCCcceEEECCCCCEEE
Confidence 34444443321 124568899999976554 45678999999887765433 2445789999999999998
Q ss_pred EE-cCCCeEEEEECCCCC
Q psy16005 232 AS-DAHRKVVLYRVPDFE 248 (248)
Q Consensus 232 ~~-~~d~~i~vw~~~~~~ 248 (248)
++ ..+|.|.+||+++++
T Consensus 265 ~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 265 TTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEcCCCCeEEEEECCCCc
Confidence 86 468999999998874
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=168.88 Aligned_cols=216 Identities=13% Similarity=0.162 Sum_probs=176.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...+.+++.||||++|++|+ |..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|++|++|++.....+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 6888999999999999999998 899999999999999999999999999999988888999999999999999877744
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC---------CCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---------YEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
.++.+|.+.|.++.-..-++.+.+++.|. .++|.++.. ..+.+++|-. ...+++|+.+|.|.+|+
T Consensus 280 --etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 280 --ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred --HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence 67889999999999888788887776776 499998532 2344555543 35788999999999999
Q ss_pred CCceeeeec--c-----------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc--ccccCCcCeEEEEEcCC
Q psy16005 162 NGAKVSSLP--I-----------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK--AELDHLGPVTDCSFSPS 226 (248)
Q Consensus 162 ~~~~~~~~~--~-----------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~~~~v~~~~~s~~ 226 (248)
..+++.... + +.-+++++..|...++++|+.+|.|++|-+..+-.... ....-.+-|++++|+++
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNS 436 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccC
Confidence 333333322 1 12467899999999999999999999999988733211 22235788999999999
Q ss_pred CcEEEEE
Q psy16005 227 NEYLVAS 233 (248)
Q Consensus 227 ~~~l~~~ 233 (248)
|+.+++|
T Consensus 437 gk~ivag 443 (479)
T KOG0299|consen 437 GKRIVAG 443 (479)
T ss_pred CCEEEEe
Confidence 9977766
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=179.53 Aligned_cols=222 Identities=18% Similarity=0.240 Sum_probs=183.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee-eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+...+.+..|. +.++++++ +..|.+|+..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||..++++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 356678888888 44666665 89999999999998887 999999999999987788999999999999999999995
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
. ..+.+|.+.+.++... ...+++++.|. +++|+++. ...+.++..+ +.++++|+.|+.|++|+
T Consensus 284 ~--~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 284 T--HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred E--EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 5 7778999999988774 45666666555 69999873 3455666666 88999999999999999
Q ss_pred --CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC-CCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 162 --NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK-SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 162 --~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
.++.+..+. |...+.++.+.+. ..++.|+.|+.|++||+++. +++..+. +|.+-+..+.+ .+++|++++.|+
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccc
Confidence 777777776 4556888877765 79999999999999999999 7765554 78887866654 678999999999
Q ss_pred eEEEEECCCCC
Q psy16005 238 KVVLYRVPDFE 248 (248)
Q Consensus 238 ~i~vw~~~~~~ 248 (248)
+|++||..+++
T Consensus 434 ~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 434 TIKLWDAEEGE 444 (537)
T ss_pred cEEEeecccCc
Confidence 99999998875
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=157.31 Aligned_cols=230 Identities=14% Similarity=0.183 Sum_probs=181.8
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
+.......|.++.|+|.++.|++++ ||.+++|+....+....+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCC
Confidence 4455567899999999888877776 999999999887666555 68999999999874 57999999999999999998
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCC-------CceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYE-------PSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
+. ..+..|..++.++.+++....+++++-|+ +++|+.+.... -.-.+.+-.++.|++|+.+..+.+||.
T Consensus 86 ~~---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 86 NE---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred cc---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEc
Confidence 74 46678999999999999888888888665 69999874221 123345567889999999999999995
Q ss_pred Cceee-----eecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----CCcccccC---------CcCeEEEEEc
Q psy16005 163 GAKVS-----SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL----SPKAELDH---------LGPVTDCSFS 224 (248)
Q Consensus 163 ~~~~~-----~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~---------~~~v~~~~~s 224 (248)
+.... .-.....+.|+++-|++.-+++++-||.|.+=.++..+. ...+. .| --+|++++|+
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk-CHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK-CHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE-eeecccCCceEEEEeceeEec
Confidence 54332 234566789999999999899999999988765554411 11111 12 2379999999
Q ss_pred CCCcEEEEEcCCCeEEEEECCCC
Q psy16005 225 PSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 225 ~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|-.+.|+||+.||.|.+||+.+.
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cccceEEecCCCceEEEccCcch
Confidence 99999999999999999998764
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=157.56 Aligned_cols=215 Identities=13% Similarity=0.265 Sum_probs=169.7
Q ss_pred cccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCc--EEEEEccCCeEEEEECCC
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF--YIASGDISGKVRIWDTVN 89 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~ 89 (248)
...|.++|.+++|+.||..+++|+ |+.+++||+.+++ ...+..|.++|.++.|-+... .|+|||.|.+|+.||++.
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 346889999999999999999987 9999999999995 455779999999999987554 899999999999999998
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC------------CCCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------------DYEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
...+....++ +.++++..-. .-.+++.++.++.+++|+. ...+++++...+....+.|+-+|.+
T Consensus 147 ~~pv~t~~LP---eRvYa~Dv~~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 147 SNPVATLQLP---ERVYAADVLY-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred CCeeeeeecc---ceeeehhccC-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 8877666654 5566665432 2233444566789999853 3456889988888888999999998
Q ss_pred EEEE--CC--ceeeeecc----------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 158 SIVE--NG--AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 158 ~~~~--~~--~~~~~~~~----------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
.+.. .+ +.-..+.. -+.|++++|+|....|++++.||++.+||-.....+.... .|..+|++.+|
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~f 301 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSF 301 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEe
Confidence 8854 33 22222221 2346899999999999999999999999988776655444 68999999999
Q ss_pred cCCCcEEEEE
Q psy16005 224 SPSNEYLVAS 233 (248)
Q Consensus 224 s~~~~~l~~~ 233 (248)
+.+|.+++.+
T Consensus 302 n~~G~ifaYA 311 (347)
T KOG0647|consen 302 NRNGSIFAYA 311 (347)
T ss_pred cCCCCEEEEE
Confidence 9999988765
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=153.64 Aligned_cols=235 Identities=18% Similarity=0.266 Sum_probs=179.2
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC----ceeeeeecCCcceEEEEECc--CCcEEEEEccCCe
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP--SGFYIASGDISGK 81 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~ 81 (248)
..++...|..-|.++.|.+.|+.+|+++ |++++|||.... ......+.|.+.|..+.|.+ -|+.+|+++.|++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 3466778889999999999999999997 999999996432 34556789999999999976 4899999999999
Q ss_pred EEEEECCC-------CceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCcE-EEEEcc--------------------
Q psy16005 82 VRIWDTVN-------KEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENGA-KVSSLP-------------------- 131 (248)
Q Consensus 82 i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~-~i~~~~-------------------- 131 (248)
+.||.-.. .+......+......|+.+.|.|. |-.|++++.+|+ +||...
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 99997521 122344556667889999999994 678889998886 887642
Q ss_pred ---CCCCCceeEeCCC---CCEEEEEcCC-----CeEEEEEC---C-ce--eeee-cccCCCceEEEcCCC----CEEEE
Q psy16005 132 ---IDYEPSSISLDHE---HGLVAVGGAD-----SKISIVEN---G-AK--VSSL-PIDYEPSSISLDHEH----GLVAV 189 (248)
Q Consensus 132 ---~~~~~~~~~~~~~---~~~~~~~~~~-----~~i~~~~~---~-~~--~~~~-~~~~~~~~~~~s~~~----~~l~~ 189 (248)
......++.|+|. ..++++|+.+ +.++||.. + +. +.++ .+..++..++|.|+- ..||+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 1234467888864 4578887766 46788762 2 11 2222 256678999999953 48999
Q ss_pred EcCCCcEEEEEcCCCC----------------CC---CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 190 GGADSKVHIYELNNKS----------------LS---PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 190 ~~~d~~v~i~d~~~~~----------------~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++.|| |+||.++... .. .....+|.+.|..+.|+-.|..|++.+.||++++|..
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99999 9999997421 00 0112369999999999999999999999999999974
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-25 Score=162.63 Aligned_cols=231 Identities=15% Similarity=0.205 Sum_probs=181.1
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC--CceeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN--PAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+.|+++.|+|....+++++ |+.+++|.++. ...++.+.....+|.+.+|.|+|. .+++++...-.+.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 457899999999999999988 99999998864 344555656678999999999998 88999999999999999887
Q ss_pred eeeeeeccCCC-CCeeEEEEecCCCEEEEEeCCcE-EE---------EEccCCCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 92 HILKNEFHPIG-GPIKDIAWSPDNQRMISIVENGA-KV---------SSLPIDYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 92 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~-~i---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
........++. ..+.....+|++++|+..+..|. .+ -.+..++.+..+.|+.+++.+++++.+|.|++|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 65444444443 35677888999999999988774 33 234567788899999999999999999999999
Q ss_pred E--CCceeeeecccCCC--ceEEEcCCCCEEEEEcCCCcEEEEEcCCC------CCCCc---------------------
Q psy16005 161 E--NGAKVSSLPIDYEP--SSISLDHEHGLVAVGGADSKVHIYELNNK------SLSPK--------------------- 209 (248)
Q Consensus 161 ~--~~~~~~~~~~~~~~--~~~~~s~~~~~l~~~~~d~~v~i~d~~~~------~~~~~--------------------- 209 (248)
| ...+++.+.-...+ ++++.++++.+||+|+..|.|.|||.++. +++..
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 9 44455555555544 67888899999999999999999996431 10000
Q ss_pred -----------------------cc--ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 210 -----------------------AE--LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 210 -----------------------~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+. ...-+.|+|++|||.+.+||.|..+|.+.+|.+..
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeecc
Confidence 00 01235699999999999999999999999999864
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=171.77 Aligned_cols=231 Identities=16% Similarity=0.191 Sum_probs=189.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc---eeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA---ISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~---~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|+++.+|...+++++|+.|.|+|||+.... ++..+. ...+.|.++.+.|||+.|++|++-.++.|||+..
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 46677889999999999999999999999986532 222332 3456799999999999999999999999999988
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
.....+.++....-.+++++.+||.+..+++..+| +.|||+.. .....++.++++|..|.+|+-|.+++
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence 77655566665556788999999999888777665 69999864 34567999999999999999999999
Q ss_pred EEEC--CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 159 IVEN--GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
.||. +..+........+.++..+|++.++++|-+++.+.+......+. ....-|...|.++.|++.|+++++.+.|
T Consensus 577 cWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 577 CWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred ehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc--eeecccccEEEEEEecccCceeeecCch
Confidence 9994 44455555566788999999999999999999998887765543 2333589999999999999999999999
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
+.+..|...-|
T Consensus 655 nlLnawrtPyG 665 (705)
T KOG0639|consen 655 NLLNAWRTPYG 665 (705)
T ss_pred hhhhhccCccc
Confidence 99999987544
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=179.59 Aligned_cols=194 Identities=16% Similarity=0.276 Sum_probs=153.7
Q ss_pred eeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc--------------------------------------
Q psy16005 51 SDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-------------------------------------- 91 (248)
Q Consensus 51 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------------- 91 (248)
.+.+. .|.+.|.++.||+||+|||+|+.||.|+||.+...+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 899999999999999999999999999999875500
Q ss_pred --------------------eeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEcc---------CCCCCceeEe
Q psy16005 92 --------------------HILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLP---------IDYEPSSISL 141 (248)
Q Consensus 92 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~---------~~~~~~~~~~ 141 (248)
..+...+.+|.+.|..+.|+.++ +|++++.| .+++|++. +..-++|++|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 00112356799999999999755 56666655 56999975 4556899999
Q ss_pred CC-CCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------
Q psy16005 142 DH-EHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------ 212 (248)
Q Consensus 142 ~~-~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------ 212 (248)
+| |.+++++|+-|+++++|+ ..+.......+.-|++++|.|||+..++|+.+|.+++|+....+.......
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 98 678999999999999999 444455556777799999999999999999999999999987765433221
Q ss_pred --cCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCC
Q psy16005 213 --DHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 213 --~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~ 246 (248)
.|. .|+.+.|.|... .+++.+.|..|+|||.++
T Consensus 498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 133 799999998654 577778899999999854
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=164.90 Aligned_cols=196 Identities=18% Similarity=0.262 Sum_probs=164.2
Q ss_pred eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc-eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEE
Q psy16005 50 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKV 127 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i 127 (248)
..+.+..|.+.|.-+.||++|++||+++.|.+..+|++.... .....++.+|..+|..+.|+||.++|++++.+. +.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 345677999999999999999999999999999999976433 334577889999999999999999999998665 589
Q ss_pred EEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecc--cCCCceEEEcCCCCEEEEEcCC
Q psy16005 128 SSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPI--DYEPSSISLDHEHGLVAVGGAD 193 (248)
Q Consensus 128 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~d 193 (248)
|+... +..+.+.+|.||+..+++|+.|+.+..|| .|......+. ...+.++++++||+++++.+.|
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 99753 35678999999999999999999999999 5555443332 2447899999999999999999
Q ss_pred CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..|++|+..+....... ....+|++++.|.|++++++.-.+..+++||++..
T Consensus 376 ~~i~l~~~e~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred cceeeechhhhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 99999999877654333 34568999999999999999999999999999753
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=175.59 Aligned_cols=242 Identities=14% Similarity=0.258 Sum_probs=170.8
Q ss_pred cceecccccccccCCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCe
Q psy16005 5 NKYIFATLPRTQRGQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGK 81 (248)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 81 (248)
..+++.++... .++|++++|..||+.+.+. . .|.+.+||++..+....+. .|.+.|....|-|....+++++.|..
T Consensus 233 ~dkil~sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS 311 (910)
T KOG1539|consen 233 FDKILMSFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS 311 (910)
T ss_pred cCcEEEEEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc
Confidence 34556666432 6999999999999866554 4 6999999999888777666 78889999999999999999999999
Q ss_pred EEEEECCCCce--eeeeeccCCCCCeeEEEEe-cCCCEEEEEeCCcE-EE------------------------------
Q psy16005 82 VRIWDTVNKEH--ILKNEFHPIGGPIKDIAWS-PDNQRMISIVENGA-KV------------------------------ 127 (248)
Q Consensus 82 i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~-~i------------------------------ 127 (248)
+++|=.+++.. .....-.+|..+..++.|. .+|..+.+++.|+. +.
T Consensus 312 lk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred eeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 88885554332 2334556889999999987 57777777776541 11
Q ss_pred -----------------------------------EEcc----------------CCCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 128 -----------------------------------SSLP----------------IDYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 128 -----------------------------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
|+++ .+...++++.++-|+..+.|...|.
T Consensus 392 ~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~ 471 (910)
T KOG1539|consen 392 KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT 471 (910)
T ss_pred hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe
Confidence 2221 0122345556666666666666666
Q ss_pred EEEEE--CCceeeee----cccCCCceEEEcCCCCEEEEEcCCCcEEEEE------------------------------
Q psy16005 157 ISIVE--NGAKVSSL----PIDYEPSSISLDHEHGLVAVGGADSKVHIYE------------------------------ 200 (248)
Q Consensus 157 i~~~~--~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d------------------------------ 200 (248)
|.+|+ .|-....+ .+..+++.++.+.-++.+++++.+|.+.+||
T Consensus 472 Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 472 IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 66666 33333333 4555566666666555666666666555554
Q ss_pred -----------cCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 201 -----------LNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 201 -----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+.+.++.+. +|.+.|++++|||||++|++++.|++|++||+.++.
T Consensus 552 ~~ddf~I~vvD~~t~kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 552 ALDDFSIRVVDVVTRKVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred hcCceeEEEEEchhhhhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 44444444444 899999999999999999999999999999998863
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=152.61 Aligned_cols=194 Identities=15% Similarity=0.237 Sum_probs=166.0
Q ss_pred eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc
Q psy16005 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP 131 (248)
Q Consensus 53 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~ 131 (248)
.+++|..+++.+.++.+|.+|++++.|.+..+|-..+|+.+ -.+.+|.+.|+++..+.+.+++++++.|. +++|+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 36799999999999999999999999999999998888855 78899999999999999999999999776 5999986
Q ss_pred C---------CCCCceeEeCCCCCEEEEEcC-----CCeEEEEECC---------ceeeeec-ccCCCceEEEcCCCCEE
Q psy16005 132 I---------DYEPSSISLDHEHGLVAVGGA-----DSKISIVENG---------AKVSSLP-IDYEPSSISLDHEHGLV 187 (248)
Q Consensus 132 ~---------~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~---------~~~~~~~-~~~~~~~~~~s~~~~~l 187 (248)
. +..+..+.|++++++++.... .+.|.++|.. ++...++ ....++.+.|+|-++.|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 4 456788999999998887654 3567788732 2233333 45668899999999999
Q ss_pred EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 188 AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++|.+||.|.+||+++++........|...|+.++++||..++++++.|.+-++||+.+.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee
Confidence 9999999999999999876555555699999999999999999999999999999998753
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=151.20 Aligned_cols=227 Identities=16% Similarity=0.237 Sum_probs=174.1
Q ss_pred ccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
-.|..++.+++|.++...+..+.||.|+.+|+.+++... +..|..+|.|+.+++....+++|+.|++|++||.+.....
T Consensus 51 ~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 51 FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred eecCCceeeeeccCCceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 357889999999986544444459999999999877654 5589999999999998888999999999999999874432
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEE-eCCcEEEEEccC------------CCCCceeEeCCCCCEEEEEcCCCeEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISI-VENGAKVSSLPI------------DYEPSSISLDHEHGLVAVGGADSKISI- 159 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~- 159 (248)
..+. ....|.++... ++.|+++ .+..+.+|+++. ...++++++-|++.-+++++-||.+.+
T Consensus 130 --~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 130 --GTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred --cccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 2222 23478877664 5666664 555679999863 345789999999899999999999877
Q ss_pred -EECCc----eeeeec----------ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEc
Q psy16005 160 -VENGA----KVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFS 224 (248)
Q Consensus 160 -~~~~~----~~~~~~----------~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s 224 (248)
+|..+ ....+. .-.++++++|+|-...|++|+.||.|.+||+.+.+.+..+. .....|.+++|+
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs 283 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFS 283 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEec
Confidence 45331 111121 23468999999999999999999999999999998877665 456779999999
Q ss_pred CCCcEEEEEcC-----CCe-------EEEEECCCC
Q psy16005 225 PSNEYLVASDA-----HRK-------VVLYRVPDF 247 (248)
Q Consensus 225 ~~~~~l~~~~~-----d~~-------i~vw~~~~~ 247 (248)
.||..||.++. ... |.|.++.+.
T Consensus 284 ~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~ 318 (323)
T KOG1036|consen 284 MDGSLLAIASSYQYERADTPTHERNAIFIRDLTDY 318 (323)
T ss_pred cCCCeEEEEechhhhcCCCCCCCCCceEEEecccc
Confidence 99999999863 223 677766554
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-25 Score=155.91 Aligned_cols=239 Identities=14% Similarity=0.234 Sum_probs=196.1
Q ss_pred cceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEec------CCC-----------------------------
Q psy16005 5 NKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNI------ENP----------------------------- 48 (248)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~------~~~----------------------------- 48 (248)
...++.... +|.|.|++++|++.+.++++++ |++..||.. ...
T Consensus 179 sg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 179 SGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred cccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 344555563 5999999999999999999987 889999862 110
Q ss_pred -----ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 49 -----AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 49 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
.++..+.+|.+.|.+..|-..|+.+++++.|.+-.+||+++++.+ ..+.+|....+.++-+|..+++++++.|
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v--~~LtGHd~ELtHcstHptQrLVvTsSrD 335 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV--NILTGHDSELTHCSTHPTQRLVVTSSRD 335 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee--ccccCcchhccccccCCcceEEEEeccC
Confidence 023456789999999999999999999999999999999999955 7889999999999999999999999988
Q ss_pred cE-EEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE---CCceeeeecccCCCceEEEcCCCCEEE
Q psy16005 124 GA-KVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVE---NGAKVSSLPIDYEPSSISLDHEHGLVA 188 (248)
Q Consensus 124 ~~-~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~ 188 (248)
.. ++|+++. ...+++..|..+. .+++|+.|.+|++|| ....+.++....+++.++.+..+..++
T Consensus 336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA 414 (481)
T ss_pred ceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEE
Confidence 75 9999862 2335555665544 577899999999999 556778888899999999999999999
Q ss_pred EEcCCCcEEEEEcCCCCCCC---cccccCCcCeEEEEEcCCCc--EEEEEcCCCeEEEEECCCC
Q psy16005 189 VGGADSKVHIYELNNKSLSP---KAELDHLGPVTDCSFSPSNE--YLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 189 ~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~~~~~ 247 (248)
.-..+..|++||+...+... ....+|...|+|++|..+-. -|++++.|..+.=|++.+.
T Consensus 415 iPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999999999998765432 23347999999999986643 5789999999999998764
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=154.16 Aligned_cols=207 Identities=18% Similarity=0.324 Sum_probs=162.2
Q ss_pred cccccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCce----------ee-----eeecCCcceEEEEECc-CCcE
Q psy16005 11 TLPRTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAI----------SD-----IYTEHSCAVNVAKYSP-SGFY 72 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~----------~~-----~~~~~~~~v~~~~~s~-~~~~ 72 (248)
.+...|.|.|+++...+ .|+++++|+ ||.+.+||+++... .. .-.+|+-.|..+.|-| |...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 34567889999999988 588999987 99999999986431 11 1126778899999999 7778
Q ss_pred EEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEc
Q psy16005 73 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (248)
+.+++.|.++++||..+-+....+.+ ++.|++-+++|-. ....++|+|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a----------------------------~sHcLiA~gt 165 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMA----------------------------MSHCLIAAGT 165 (397)
T ss_pred eecccccceEEEeecccceeeEEeec---CceeehhhcChhh----------------------------hcceEEEEec
Confidence 88999999999999999886655554 4678888888731 1234667777
Q ss_pred CCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCC------------CCCCc--ccccC
Q psy16005 153 ADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNK------------SLSPK--AELDH 214 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~------------~~~~~--~~~~~ 214 (248)
.+-.|++-| .|..-+.+. +...+.++.|+|... .|++|+.||.|++||++.. +..+. ....|
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah 245 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH 245 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc
Confidence 888888888 666677776 456789999999887 5778999999999999754 11111 12358
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+.|..++|+.++.++++.+.|..+++|+..+|+
T Consensus 246 ~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred cceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 8999999999999999999999999999998875
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=165.69 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=190.6
Q ss_pred cccccc-ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee--eeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 10 ATLPRT-QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 10 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
..++.. ...-|.++.+.|||+.|++|+ ..++.|||+...... ..+....-.+.+++.+||.+..+++..||.|.||
T Consensus 457 sqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 457 SQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred ccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 344433 334588999999999999998 679999999865443 3343444567889999999999999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC---------CCCceeEeCCCCCEEEEEcCCC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---------YEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
|+.+... ...+++|.+.+.||..++||..|-+++-|. ++.||++.. ..+.++-+.|++..+++|..++
T Consensus 537 DLhnq~~--VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 537 DLHNQTL--VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred Eccccee--eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC
Confidence 9998774 488999999999999999999999998555 699998643 4577888899999999999999
Q ss_pred eEEEEE-CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 156 KISIVE-NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 156 ~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.+.+.. .+.....+. ++.-+.++.|.+.|+++++.+.|+.+..|...-+..+... .....|.++.+|-|.+++++|
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs--kE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec--cccCcceeeeeccCceEEEec
Confidence 999988 333333443 4555789999999999999999999999998887765433 467889999999999999999
Q ss_pred cCCCeEEEEEC
Q psy16005 234 DAHRKVVLYRV 244 (248)
Q Consensus 234 ~~d~~i~vw~~ 244 (248)
+.|.+..||.+
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 99999999876
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=159.81 Aligned_cols=231 Identities=11% Similarity=0.118 Sum_probs=180.6
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
.++..+. .|.|.|..++++. +..+.+|.|.+|+.|.++. .+.+.+.+ ...+..+.-+..+..++|++. .|.|||
T Consensus 100 ~~~~~f~-AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 100 ECIRTFK-AHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWD 173 (433)
T ss_pred hhhheee-cccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecc
Confidence 3444453 5889999999987 6666666799999999775 45666643 566778888777788999876 599999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCE-EEEE-eCCcEEEEEccCCCC---------CceeEeCCCCCEEEEEcCCC
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQR-MISI-VENGAKVSSLPIDYE---------PSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~-~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 155 (248)
......+....+ ..+.+.++.|+|-... |+++ ++.++.++|++...+ ...++|+|+.-.+.++++|.
T Consensus 174 ~~R~~Pv~smsw--G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 174 EQRDNPVSSMSW--GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccCCccceeec--CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence 987775543443 3578999999996654 4455 355679999886554 56789999888999999999
Q ss_pred eEEEEECCceeeeec----ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 156 KISIVENGAKVSSLP----IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 156 ~i~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
.++.+|.......+. +-..+..+.|||.|+-+++|+.|.+|+||..+.+.............|.++.||.|.+|++
T Consensus 252 nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 252 NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYII 331 (433)
T ss_pred cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEE
Confidence 999999655444433 3445789999999999999999999999999988765444434556799999999999999
Q ss_pred EEcCCCeEEEEECC
Q psy16005 232 ASDAHRKVVLYRVP 245 (248)
Q Consensus 232 ~~~~d~~i~vw~~~ 245 (248)
+|+.|+.|++|...
T Consensus 332 SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAK 345 (433)
T ss_pred ecCCCcceeeeecc
Confidence 99999999999864
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=157.01 Aligned_cols=228 Identities=16% Similarity=0.227 Sum_probs=183.0
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
+....+..|.|++|.++|..+-.-++|.|.||+..+.+..+....|.+.|.+++...+|.+| +|+.|..|..||- .-+
T Consensus 241 fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~-~y~ 318 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDD-NYR 318 (626)
T ss_pred cccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccc-ccc
Confidence 33444578999999999987655569999999998888877777999999999999998754 5999999999993 333
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEe-CCcE---------EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIV-ENGA---------KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
.+...+++...++|+.++=...+ |+.+. .+.+ .+-..-+......++.+|+.++++++++|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 33445677777788877654333 44333 3322 222233445677889999999999999999999999
Q ss_pred CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 162 NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
..+.........+..|+.|+|.| .+|+|...|...+.|.++...+.... . ..+++.++|+|+|.+||.|+.|+.|++
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 88888888889999999999999 99999999999999999966644333 3 789999999999999999999999999
Q ss_pred EECCC
Q psy16005 242 YRVPD 246 (248)
Q Consensus 242 w~~~~ 246 (248)
|.+..
T Consensus 474 y~Vs~ 478 (626)
T KOG2106|consen 474 YRVSA 478 (626)
T ss_pred EEECC
Confidence 98864
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=160.38 Aligned_cols=226 Identities=16% Similarity=0.225 Sum_probs=181.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCce-eeeeecC-CcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAI-SDIYTEH-SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
....|.++||+.+.+.||.+. +|.|.+|++..+=. ...+.++ ...|.+++|++ +..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 457899999999999999996 99999999987533 3344544 55799999995 45688889999999999999985
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc--------------cCCCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL--------------PIDYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
. .......+.|++++.+|.+..++.++++|+ ++++ +...++.+++|+|++..++.|+.||.|+
T Consensus 103 ~--~~~d~~gg~IWsiai~p~~~~l~IgcddGv-l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 103 K--YNIDSNGGAIWSIAINPENTILAIGCDDGV-LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred e--EEecCCCcceeEEEeCCccceEEeecCCce-EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 4 566666799999999999999999999994 3332 2346788999999999999999999999
Q ss_pred EEE--CCceeee-----ecccCCC----ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 159 IVE--NGAKVSS-----LPIDYEP----SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 159 ~~~--~~~~~~~-----~~~~~~~----~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
+|| .+..+.. ......- .++.+-.+ ..|++|...|.|.+||...+.++.... .|.+.|.+++..+++
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNE 257 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCC
Confidence 999 4444441 1222222 33444434 478999999999999999999876665 699999999999999
Q ss_pred cEEEEEcCCCeEEEEECCCC
Q psy16005 228 EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~~ 247 (248)
.++++++.|+.|.-|...+.
T Consensus 258 d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CeEEEccCCCceEEEEecCC
Confidence 99999999999998877654
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=168.41 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=94.6
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC--CeEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--GKVRIW 85 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw 85 (248)
.+-..++.+++|++||++|+++++|. ...+++|++.....+..+..|+-.|+|++|+|.++++++.+.. -.|.+|
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 34456778999999999999999996 4589999999988999999999999999999999999976653 467788
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL 130 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~ 130 (248)
|.+......... -...|..++|+.||.|+++++...+++|.+
T Consensus 152 dWr~N~~~asnk---iss~Vsav~fsEdgSYfvT~gnrHvk~wyl 193 (1080)
T KOG1408|consen 152 DWRVNSSGASNK---ISSVVSAVAFSEDGSYFVTSGNRHVKLWYL 193 (1080)
T ss_pred hhhhcccccccc---cceeEEEEEEccCCceeeeeeeeeEEEEEe
Confidence 876554322222 246788899999999999998888888875
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=163.88 Aligned_cols=234 Identities=15% Similarity=0.218 Sum_probs=176.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee--eecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
..|...|..+.|-|....|++++ |.++++||+.+.++... +.+|...|.+++|.| +...|++|+.||.|.|||++-
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 45899999999999555666665 89999999999888766 789999999999999 557789999999999999863
Q ss_pred Cce--e--------------------e---eeeccCCCCCeeE---EEEecCCCEEEEEeC-Cc-EEEEEccCCC-----
Q psy16005 90 KEH--I--------------------L---KNEFHPIGGPIKD---IAWSPDNQRMISIVE-NG-AKVSSLPIDY----- 134 (248)
Q Consensus 90 ~~~--~--------------------~---~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-~~-~~i~~~~~~~----- 134 (248)
... + . ......+...|.+ +.+..|...|++++. |+ +++||++..+
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 320 0 0 0011233445555 556678888888875 44 6999996432
Q ss_pred ----------------CCceeEeCCCCCEEEEEcCCCeEEEEECCce----eeeecccCC---CceEEEcCCCCEEEEEc
Q psy16005 135 ----------------EPSSISLDHEHGLVAVGGADSKISIVENGAK----VSSLPIDYE---PSSISLDHEHGLVAVGG 191 (248)
Q Consensus 135 ----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~---~~~~~~s~~~~~l~~~~ 191 (248)
...++..+..|.++.+.+.|+.|++|+.... +..+..... -..-..+||+.++++|+
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence 2345667777888888888999999994322 111111110 12235689999999999
Q ss_pred CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC-cEEEEEcCCCeEEEEECCCC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN-EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~ 247 (248)
.|...++|.+.+.+.......+|...|++++|.|.. .-+++++.|..+++|++.++
T Consensus 337 sd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 337 SDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999999998888888999999999998853 34677799999999998654
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=152.46 Aligned_cols=231 Identities=16% Similarity=0.234 Sum_probs=188.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC-----
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT----- 87 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~----- 87 (248)
.+|+..|..++.......+.+++ |.+.+||.++++.++..+.+|.+.|+++.|++.+.++++++.|++-.||..
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 46888899888877777777777 999999999999999999999999999999999999999999999999972
Q ss_pred -CCC--------c------------------------eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC
Q psy16005 88 -VNK--------E------------------------HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID 133 (248)
Q Consensus 88 -~~~--------~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~ 133 (248)
... + .++...+.+|.+.|.+..|...|+.+++++-|.. .+|++..+
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg 304 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG 304 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence 110 0 1123456788899999999999999999997775 89998654
Q ss_pred ----------CCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeec----ccCCCceEEEcCCCCEEEEEcCCCcEEEE
Q psy16005 134 ----------YEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLP----IDYEPSSISLDHEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 134 ----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~ 199 (248)
...+.++-+|..+++++.+.|.+.++||..+.++... +...+++..|..+. .+++|+.|.+|++|
T Consensus 305 e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 305 EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVW 383 (481)
T ss_pred ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEe
Confidence 3456667789999999999999999999666555443 44557888898765 57899999999999
Q ss_pred EcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 200 ELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 200 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
|+++-+...... .-..+++.++.+..++.++.--.+..|++||++-
T Consensus 384 dLrNMRsplATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 384 DLRNMRSPLATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred eeccccCcceee-ecCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 999876543322 3567899999998888888888889999999864
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=151.64 Aligned_cols=191 Identities=17% Similarity=0.250 Sum_probs=144.2
Q ss_pred eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee----eeeccCCCCCeeEEEEecCCCEEEEEeCCc--EE
Q psy16005 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL----KNEFHPIGGPIKDIAWSPDNQRMISIVENG--AK 126 (248)
Q Consensus 53 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~ 126 (248)
.+++|.+.|++++|+.||++|+|++.|++|++|+++.-.... +..++ -+-.+.+.|.||-+-+++....+ ++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEE
Confidence 567999999999999999999999999999999998633211 11111 13567899999988877776554 45
Q ss_pred EEEccCC----------------------CCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccC-CCceEEEcC
Q psy16005 127 VSSLPID----------------------YEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDY-EPSSISLDH 182 (248)
Q Consensus 127 i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~-~~~~~~~s~ 182 (248)
+|.+... -.+..+-....+.++++++.|..|.+|+ .|+.+..+.... .-...+.||
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCC
Confidence 5554211 1122233445678999999999999999 778777776433 345678999
Q ss_pred CCCEEEEEcCCCcEEEEEcCC---CCC---CCc-ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 183 EHGLVAVGGADSKVHIYELNN---KSL---SPK-AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~---~~~---~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|+++++++..-.|++|.+-- ++. ... .+.+|...|..++|+|+.+.+++.+.||++++||.+
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 999999999988999999732 221 111 223799999999999999999999999999999974
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=163.35 Aligned_cols=238 Identities=18% Similarity=0.281 Sum_probs=184.2
Q ss_pred ccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC--ceee-----eeecCCcceEEEEECcCCcEEEEEccCCe
Q psy16005 10 ATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP--AISD-----IYTEHSCAVNVAKYSPSGFYIASGDISGK 81 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~--~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 81 (248)
..+-.+|...|.++.|+|.+..|++++ |.++.+|..++. --+. ...+......+..|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 355568999999999999997777776 999999986653 2221 22234556889999999999999999999
Q ss_pred EEEEECCC-CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEE--------------------c---------
Q psy16005 82 VRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSS--------------------L--------- 130 (248)
Q Consensus 82 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~--------------------~--------- 130 (248)
.++|.... ........+.+|.+.|..++|+|.|.+|++.+.|.. +++. +
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 99998333 333344566789999999999999999999987653 3311 0
Q ss_pred --------------------------------------------------------------------------------
Q psy16005 131 -------------------------------------------------------------------------------- 130 (248)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (248)
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence
Q ss_pred -----------------------cCCCCCceeEeCCCCCEEEEEcCCC-----eEEEEECCce--eeee-cccCCCceEE
Q psy16005 131 -----------------------PIDYEPSSISLDHEHGLVAVGGADS-----KISIVENGAK--VSSL-PIDYEPSSIS 179 (248)
Q Consensus 131 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~--~~~~-~~~~~~~~~~ 179 (248)
.+.+.+.+++.+|+++++|+++... .|++|++..- ...+ .|...++.++
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 0224567889999999999987654 5888995543 2333 3566789999
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCCC---cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 180 LDHEHGLVAVGGADSKVHIYELNNKSLSP---KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|||||++|++.+.|.++.+|......... .....|...|.++.|+|++.+++|++.|.+|++|...+.
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999999999999985443221 123469999999999999999999999999999998764
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-26 Score=177.03 Aligned_cols=219 Identities=16% Similarity=0.252 Sum_probs=188.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...+.++..-..++.+++|+ +..+-+|.+.....+..+.+|..+|.++.|+++..+|++|+.+|+|++||++.++.+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 3566777887767778888887 778889998877777778999999999999999999999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
..+.+|...+..+.|+|-+.+.+.++.+. ..+||.+.. ..+..+.++|+|++++.+++|..+++||
T Consensus 106 --rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 106 --RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred --hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 68889999999999999999998888766 599998732 2356788999999999999999999999
Q ss_pred -CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 162 -NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 162 -~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
.|+....+. +...+..+.++|..-+++.|+.|+++++||+++.+.+.... .....|.+++|+|+++.+++|...
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCchh
Confidence 577777777 67788999999999999999999999999999888765554 346789999999999999888654
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=154.99 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=177.9
Q ss_pred ccccCCcEEEEeCCCCC--EEEEeC-CcEEEEEecCCCc----eeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEE
Q psy16005 14 RTQRGQPIVLGGDPKGK--NFLYTN-GNSVIIRNIENPA----ISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIW 85 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~--~l~~~~-~~~v~v~~~~~~~----~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw 85 (248)
..+.++|++++|+|..+ .+++|+ .|+|-+||+.+.+ -+..+..|..+|.++.|+| +-..+++.|+||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 34778999999999765 556666 7999999996322 2345668999999999999 55789999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCCCCC-EEEEEc
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-----------YEPSSISLDHEHG-LVAVGG 152 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~~~~-~~~~~~ 152 (248)
|++++.......+..-...+..+.|+.+...++.+..-| ..+|+++.+ ..+..++++|-.. ++++++
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc
Confidence 999876544344443456778888998888888877655 478887643 3578999999765 788999
Q ss_pred CCCeEEEEECCc-------eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC----CCCCCCcccccCC----cC
Q psy16005 153 ADSKISIVENGA-------KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN----NKSLSPKAELDHL----GP 217 (248)
Q Consensus 153 ~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~----~~~~~~~~~~~~~----~~ 217 (248)
.|++.+|||.++ .+..+++...|.+..|||.+..|++.+.|..|+|||.. .........+.+. -.
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT 422 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLT 422 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccccc
Confidence 999999999332 25667788889999999988889999999999999984 2222222221111 12
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.....|.|+..+++++..-..|-|+|-..+
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 345689999999999988888888886654
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=166.01 Aligned_cols=220 Identities=16% Similarity=0.256 Sum_probs=176.4
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.|..++|-|||..|+.+.+..+.+||...|...+.+++|++.|.|++|+.||+.+|+|+.|..|.+|...-... . -
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-L---k 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-L---K 89 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-e---e
Confidence 78899999999999999999999999999999999999999999999999999999999999999998654332 1 2
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcc--------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeee-
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENGAKVSSLP--------IDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSS- 168 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~- 168 (248)
..|.+.|.|+.|+|-.+.|++++-+..-+|... ...++.+.+|..||++++.|..+|+|.+-+ .++....
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I 169 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI 169 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence 357899999999999999999987777777653 234567788999999999999888887754 2111111
Q ss_pred -------------------------------------------------ecccCCCceEEEcCCCCEEEEEcCCCcEEEE
Q psy16005 169 -------------------------------------------------LPIDYEPSSISLDHEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 169 -------------------------------------------------~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~ 199 (248)
-...+.+.|+.+-|+|.+++.|+.|+.+.+|
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence 1123445677778889999999999999988
Q ss_pred EcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 200 ELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 200 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.-+.-. ..+.- .....|+.++..|++++++.|+.||+|--|++
T Consensus 250 TR~Gvr-LGTvg-~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 250 TRDGVR-LGTVG-EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eecCeE-Eeecc-ccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 644322 22222 25678999999999999999999999998876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-22 Score=150.31 Aligned_cols=215 Identities=11% Similarity=0.179 Sum_probs=156.6
Q ss_pred CEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 30 KNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 30 ~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
+.+++++ |+.+++||+.+++....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++.. ..+..+ ..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~-~~~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLPSG-PDPEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--EeccCC-CCccE
Confidence 4566655 9999999999998888886554 46789999999876 56778899999999988754 233333 33567
Q ss_pred EEEecCCCEEEEEe-C-CcEEEEEccCC---------CCCceeEeCCCCCEEEEEcCCC-eEEEEEC--CceeeeecccC
Q psy16005 108 IAWSPDNQRMISIV-E-NGAKVSSLPID---------YEPSSISLDHEHGLVAVGGADS-KISIVEN--GAKVSSLPIDY 173 (248)
Q Consensus 108 ~~~~~~~~~l~~~~-~-~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~~~~~~~~ 173 (248)
++|+|+++.+++++ . +.+.+|++... ..+..++++|++..++++..++ .+..||. ++....+....
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 89999999887654 3 34688887532 3467789999999999888765 4566783 34444444455
Q ss_pred CCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCccccc----C--CcCeEEEEEcCCCcEEEEE-cCCCeEEEEECC
Q psy16005 174 EPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELD----H--LGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVP 245 (248)
Q Consensus 174 ~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~----~--~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~ 245 (248)
.+..++|+|++++|++++ .++.|++||+++++........ + ......++|+|++++++.+ +.++.+.+||++
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 678899999999886554 5899999999988764433211 1 1124568899999986554 556789999998
Q ss_pred CCC
Q psy16005 246 DFE 248 (248)
Q Consensus 246 ~~~ 248 (248)
+++
T Consensus 238 ~~~ 240 (300)
T TIGR03866 238 TYE 240 (300)
T ss_pred CCc
Confidence 764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=167.24 Aligned_cols=231 Identities=13% Similarity=0.216 Sum_probs=177.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCce----eeeeec---CCcceEEEEECc-CCcEEEEEccCCeEEEEEC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI----SDIYTE---HSCAVNVAKYSP-SGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~----~~~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 87 (248)
......+++.+++-..++.++...+.||.+..... ...+.. -.-.+..+.|+. +.++|||++..|.|.+||+
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 34667888999999999998888888887654321 111111 112355778875 5689999999999999999
Q ss_pred CCC-ceeeeeeccCCCCCeeEEEEecC-CCEEEEEeCCcE-EEEEccCC----------CCCceeEeCCC-CCEEEEEcC
Q psy16005 88 VNK-EHILKNEFHPIGGPIKDIAWSPD-NQRMISIVENGA-KVSSLPID----------YEPSSISLDHE-HGLVAVGGA 153 (248)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~-~i~~~~~~----------~~~~~~~~~~~-~~~~~~~~~ 153 (248)
... +......+..|+..+.++.|++. ..+|++|+.|+. ++||++.. ..++.+.|+|. +..++++..
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 862 11123567889999999999984 567888898885 99999754 34678889874 678999999
Q ss_pred CCeEEEEECCceee---e-ecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE
Q psy16005 154 DSKISIVENGAKVS---S-LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 154 ~~~i~~~~~~~~~~---~-~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.|.+++||.++..+ . ..|..++.|+.|+|++.+||+|+.|+.|+|||+.+.+........-..+|..|+|-|..++
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 99999999665432 2 2467788999999999999999999999999999877655544455688999999999875
Q ss_pred -EEEEc--CCCeEEEEECCC
Q psy16005 230 -LVASD--AHRKVVLYRVPD 246 (248)
Q Consensus 230 -l~~~~--~d~~i~vw~~~~ 246 (248)
|++++ .|-.|+|||++.
T Consensus 278 hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred hhhhhhccccceEEEEeecc
Confidence 45553 478999999874
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=152.83 Aligned_cols=200 Identities=20% Similarity=0.321 Sum_probs=155.1
Q ss_pred cccCCcEEEEeCCCCCEEEEe--C-CcEEEEEecCC----------------CceeeeeecCCcceEEEEECcC-CcEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYT--N-GNSVIIRNIEN----------------PAISDIYTEHSCAVNVAKYSPS-GFYIA 74 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~--~-~~~v~v~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~ 74 (248)
.|.+.+..+.-++-++-.+++ + .|.|.||++.. .+++.++.+|...=.+++|||- -..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477788888888876544444 3 78999999853 2345567789888899999992 23488
Q ss_pred EEccCCeEEEEECCCCcee-eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcC
Q psy16005 75 SGDISGKVRIWDTVNKEHI-LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (248)
+|.--+.|++|...++... -...+.+|+..|..++|+|..+ ..+++|+-
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~------------------------------~vfaScS~ 278 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED------------------------------GVFASCSC 278 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccC------------------------------ceEEeeec
Confidence 8888899999999887643 2345677999999999999653 35667788
Q ss_pred CCeEEEEEC--C---ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC---CCcccccCCcCeEEEEEcC
Q psy16005 154 DSKISIVEN--G---AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL---SPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 154 ~~~i~~~~~--~---~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~v~~~~~s~ 225 (248)
|+.|+|||. + ..+....+...++.+.|+.+..+||+|+.||.++|||+++.+. +..+. -|..+|+++.|+|
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p 357 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHP 357 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEecc
Confidence 888888882 2 2344455777899999999888999999999999999987553 33333 5999999999999
Q ss_pred CC-cEEEEEcCCCeEEEEECC
Q psy16005 226 SN-EYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 226 ~~-~~l~~~~~d~~i~vw~~~ 245 (248)
.. ..|++++.|..|.+||+.
T Consensus 358 ~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCceEEeccCCCcEEEEEee
Confidence 75 467788899999999985
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=149.13 Aligned_cols=230 Identities=15% Similarity=0.165 Sum_probs=175.9
Q ss_pred ccCCcEEEEeCCC----CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCC
Q psy16005 16 QRGQPIVLGGDPK----GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 16 ~~~~v~~~~~s~~----~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~ 89 (248)
+......++|+-| ..++|+++ -|.|+|.|+.+++....+.+|...|+.+.+.|+ .++++++|.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 5566777788654 33566665 899999999999999999999999999999995 57899999999999999999
Q ss_pred Cceeeee-eccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCCC-------------------c---------ee
Q psy16005 90 KEHILKN-EFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYEP-------------------S---------SI 139 (248)
Q Consensus 90 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~-------------------~---------~~ 139 (248)
..++..+ -..+|.+.|.++.|+++|.++++++.|. +++|+++.+.-. + .-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 8876433 3568999999999999999999999776 599998622100 0 00
Q ss_pred EeCC--------CCCEEEEEcCCCeEEEEECCceeeeec------------ccCC-----C--ceEEEcCCCCEEEEEcC
Q psy16005 140 SLDH--------EHGLVAVGGADSKISIVENGAKVSSLP------------IDYE-----P--SSISLDHEHGLVAVGGA 192 (248)
Q Consensus 140 ~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~-----~--~~~~~s~~~~~l~~~~~ 192 (248)
..+. -|+++++-+-++.|..|..|+.-..+. .... + ...+++|-+++||.|..
T Consensus 248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 0011 146788888889999998654322211 1111 1 23567888999999999
Q ss_pred CCcEEEEEcCCCCCCCccccc---CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 193 DSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.|.|++||++..+........ ....|+..+||.||..|+..+.|++|.-||.-
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999988764332222 35679999999999999999999999999864
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-23 Score=145.38 Aligned_cols=187 Identities=16% Similarity=0.243 Sum_probs=152.1
Q ss_pred cccCCcEEEEeCCCCC--EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGK--NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~--~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|.+.|+++.|.++-. .|++|+ ||.|.+|+...-+....++.|.+.|+.++.+|.+++-++.+.|+.++.||+-.|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 4889999999999875 677776 9999999999999999999999999999999999999999999999999999887
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC---------CCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID---------YEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
.-....+. .....+.|+|.|.+++....+++-+|.+... .++.++.| -++..+++|..++.|.+||.
T Consensus 161 ~a~v~~L~---~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ 236 (362)
T KOG0294|consen 161 VAFVLNLK---NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF-LDGSELLVGGDNEWISLKDT 236 (362)
T ss_pred cceeeccC---CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee-cCCceEEEecCCceEEEecc
Confidence 55444443 3344599999999999999999999997632 22333333 35668889999999999994
Q ss_pred C--ceeeee-cccCCCceEEE--cCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 163 G--AKVSSL-PIDYEPSSISL--DHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 163 ~--~~~~~~-~~~~~~~~~~~--s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
. .....+ .|...+..+.+ .|++.+|++++.||.|++||++...
T Consensus 237 ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 237 DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 4 333333 46667777763 6788899999999999999998763
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=155.47 Aligned_cols=232 Identities=12% Similarity=0.139 Sum_probs=191.2
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.+..+..+.|.+++|++.++++-++.+|.|.-||+.++++...+....+.|++++.+|.+..++.|+.||.+..++...+
T Consensus 63 vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~ 142 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD 142 (691)
T ss_pred EEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc
Confidence 34556778999999997777666667999999999999999999888999999999999999999999998888898888
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCC--------------CceeEeC---CCCCEEEEEc
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYE--------------PSSISLD---HEHGLVAVGG 152 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~--------------~~~~~~~---~~~~~~~~~~ 152 (248)
.......+...++.+.+++|+|++..++.|+.|+ +++|+...... -..+.|+ -....+++|.
T Consensus 143 ~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgD 222 (691)
T KOG2048|consen 143 KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGD 222 (691)
T ss_pred eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEec
Confidence 8777777887889999999999999999999999 79999754322 2223332 1345788999
Q ss_pred CCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC---CCcccccCCcCeEEEEEcCC
Q psy16005 153 ADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL---SPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~v~~~~~s~~ 226 (248)
..|+|++|| .+..++... +...+.+++.++++..+++++.|+.|..|...+.+. .......|...|.+++..++
T Consensus 223 S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 999999999 666666655 577899999999999999999999999998887754 22233358888999999887
Q ss_pred CcEEEEEcCCCeEEEEEC
Q psy16005 227 NEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~ 244 (248)
.+++|+.|..+.+-..
T Consensus 303 --~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSS 318 (691)
T ss_pred --eEEecceeeEEEEccc
Confidence 8899999988877544
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=160.65 Aligned_cols=224 Identities=11% Similarity=0.130 Sum_probs=182.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee--eeeecCCcceEE-EEECc-CCcEEEEEccCCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS--DIYTEHSCAVNV-AKYSP-SGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~--~~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg~i~iwd~~ 88 (248)
.+|...|..++..+.. .++.++ |+++++|+-...+.. ..+.+|.+.|.. +++-+ ++-.+++|+.|++|.+|...
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~ 89 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS 89 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence 4688888888877665 566665 999999997555543 345677777776 78876 55569999999999999998
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc--------CCCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP--------IDYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
+.... ..+.+|+..|.+++...++. +++++-|. .++|... +...+..+..-|++ .+++|+.|+.|++
T Consensus 90 ~~~P~--~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 90 QAEPL--YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKL 165 (745)
T ss_pred CCCch--hhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeee
Confidence 88854 78999999999999888887 88888666 4999863 44566777777877 8899999999999
Q ss_pred EECCceeeeeccc-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 160 VENGAKVSSLPID-YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
|..++.++++..+ ..++.+++-+++ .|++++.||.|++|++ +++.+.+.. +|...|.+++..+++..++++++|++
T Consensus 166 Wk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 166 WKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred ccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCce
Confidence 9999998888754 457888888775 5788899999999999 566655554 89999999998889999999999999
Q ss_pred EEEEECC
Q psy16005 239 VVLYRVP 245 (248)
Q Consensus 239 i~vw~~~ 245 (248)
+++|+..
T Consensus 243 lriW~~~ 249 (745)
T KOG0301|consen 243 LRIWKKD 249 (745)
T ss_pred EEEeecC
Confidence 9999864
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=144.64 Aligned_cols=191 Identities=20% Similarity=0.290 Sum_probs=155.5
Q ss_pred ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce-eeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEEc
Q psy16005 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSSL 130 (248)
Q Consensus 55 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~~ 130 (248)
..|.+.|..+...--|+.|||++.|++|+|+.++.+.. ....++.+|.++|..++|.. .|..|++++.++ +.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 47888888888877899999999999999999987654 45578999999999999976 799999999777 588986
Q ss_pred c------------CCCCCceeEeCCC--CCEEEEEcCCCeEEEEE---CCc-e--eeeecccCCCceEEEcCC---C---
Q psy16005 131 P------------IDYEPSSISLDHE--HGLVAVGGADSKISIVE---NGA-K--VSSLPIDYEPSSISLDHE---H--- 184 (248)
Q Consensus 131 ~------------~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~---~~~-~--~~~~~~~~~~~~~~~s~~---~--- 184 (248)
. +...+++++|.|. |-.|++++.||.|.+++ .+. . .....|...+++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 4 3456889999886 45889999999999987 211 1 122346777899999885 4
Q ss_pred --------CEEEEEcCCCcEEEEEcCCCCCCC-cccccCCcCeEEEEEcCCC----cEEEEEcCCCeEEEEECC
Q psy16005 185 --------GLVAVGGADSKVHIYELNNKSLSP-KAELDHLGPVTDCSFSPSN----EYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 185 --------~~l~~~~~d~~v~i~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~vw~~~ 245 (248)
+.|++|+.|+.|+||+..+++-+. ..+.+|.+.|+.++|.|.- .+|++++.||++.||..+
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 569999999999999998865332 2244799999999999974 589999999999999765
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=143.54 Aligned_cols=227 Identities=15% Similarity=0.161 Sum_probs=170.5
Q ss_pred cEEEEeCCCCCEEEEeC-CcEEEEEecCCC----c--------eeeeee-cCCcceEEEEEC-------cCCcEEEEEcc
Q psy16005 20 PIVLGGDPKGKNFLYTN-GNSVIIRNIENP----A--------ISDIYT-EHSCAVNVAKYS-------PSGFYIASGDI 78 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~----~--------~~~~~~-~~~~~v~~~~~s-------~~~~~l~~~~~ 78 (248)
...+.|||||..|++-+ |+.+.+|++... + ....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34678999999998887 999999998531 0 111111 234567777774 56788999999
Q ss_pred CCeEEEEECCCCceeeeeeccCCCC---CeeEEEEecCCCEEEEEeCCcEEEEEccCC------------------CCCc
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPIGG---PIKDIAWSPDNQRMISIVENGAKVSSLPID------------------YEPS 137 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~------------------~~~~ 137 (248)
+.-|++||.-+|+....+..-.|.+ ...+++|+|||.+|+++....++++++..+ ..+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999999998654444444433 456899999999999999999999998322 2356
Q ss_pred eeEeCCCCC-EEEEEcCCCeEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCcccc
Q psy16005 138 SISLDHEHG-LVAVGGADSKISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAEL 212 (248)
Q Consensus 138 ~~~~~~~~~-~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~ 212 (248)
+++++|... .++.++....+-+|. .+.++..+ .+...|+.+.|.++|+.|.+|.. +..|..||++.-+.+...+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 788898655 889998888877765 55555555 46778999999999999999986 67899999997665433333
Q ss_pred cCCc-CeEE--EEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 213 DHLG-PVTD--CSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 213 ~~~~-~v~~--~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.|.+ .-.. ....|++++|++|+.||.|++||+++
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 4543 2233 44568899999999999999999987
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=161.50 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=180.2
Q ss_pred CCcEEEEeCCC-----CCEEEEe-CCcEEEEEecCCCce-eeee-----ecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 18 GQPIVLGGDPK-----GKNFLYT-NGNSVIIRNIENPAI-SDIY-----TEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 18 ~~v~~~~~s~~-----~~~l~~~-~~~~v~v~~~~~~~~-~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.+|..+++.-. .+.+++- ++..++.|+..+... ...+ +.....+++++.++.|++.+.|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 45666666542 2233333 477899999887554 2222 1233679999999999999999999999999
Q ss_pred ECCCCceeeeeec---cCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc---------CCCCCceeEeCCCCCEEEEEc
Q psy16005 86 DTVNKEHILKNEF---HPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP---------IDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 86 d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~---------~~~~~~~~~~~~~~~~~~~~~ 152 (248)
++.+|-.. ..+ +.|..+|.+++.+.-++.+++++.+|+ +.|++. .+..+..+..+.....++.+.
T Consensus 476 NmQSGi~r--~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 476 NMQSGIHR--KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EcccCeee--cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 99988643 444 579999999999998999999998886 899875 345677778888888999999
Q ss_pred CCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE
Q psy16005 153 ADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.|-.|.++| +.+.++.+. +...++.++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNGDF 631 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--cCCcceeeEECCCCCE
Confidence 999999999 556667776 77889999999999999999999999999999999876554 4678999999999999
Q ss_pred EEEEcCC-CeEEEEE
Q psy16005 230 LVASDAH-RKVVLYR 243 (248)
Q Consensus 230 l~~~~~d-~~i~vw~ 243 (248)
||++..| .-|++|-
T Consensus 632 LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEEecCceEEEEE
Confidence 9999888 7899995
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=152.43 Aligned_cols=191 Identities=18% Similarity=0.257 Sum_probs=148.1
Q ss_pred cCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCcee--------eeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-
Q psy16005 56 EHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHI--------LKNEFHPIGGPIKDIAWSPDN-QRMISIVENG- 124 (248)
Q Consensus 56 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~- 124 (248)
.|.+.|+.+.+.|+ ...+|+.+..+.|.|||..+.... ....+.+|...-++++|++.. -.|+++++++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 68889999999994 567788889999999998654322 234677888878889999853 3555555554
Q ss_pred EEEEEccCC-----------------CCCceeEeCCC-CCEEEEEcCCCeEEEEECCce----ee-eecccCCCceEEEc
Q psy16005 125 AKVSSLPID-----------------YEPSSISLDHE-HGLVAVGGADSKISIVENGAK----VS-SLPIDYEPSSISLD 181 (248)
Q Consensus 125 ~~i~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~~~s 181 (248)
+.+|++... ..+..++|++. ..++++++.|+.+.+||.+.. .. .-.+..+++|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 699998643 23455667764 457889999999999996631 11 12356789999999
Q ss_pred C-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC-cEEEEEcCCCeEEEEECCC
Q psy16005 182 H-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN-EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 182 ~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~ 246 (248)
| ++..||+|+.|++|++||+++-+.......+|...|.+|.|||+. ..||+++.|+.+.|||+..
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9 555889999999999999999877666666899999999999986 4778889999999999853
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=151.96 Aligned_cols=197 Identities=18% Similarity=0.255 Sum_probs=152.2
Q ss_pred EEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeecc
Q psy16005 21 IVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 21 ~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 99 (248)
.+++|+++|..+++++ ||.+++|+......+.....|...|.++.|+|||+.|++-+.| ..+||+.+++..+....-.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 6899999999999997 9999999988888887788899999999999999999999999 9999999999655433323
Q ss_pred CCCCCeeEEEEecCC---CEEEEEeCC---cEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc---eeeeec
Q psy16005 100 PIGGPIKDIAWSPDN---QRMISIVEN---GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA---KVSSLP 170 (248)
Q Consensus 100 ~~~~~v~~~~~~~~~---~~l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~ 170 (248)
..+.....+.|+.|+ .+.+.+... ++..+ .+.+|+... ..+.+.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~---------------------------~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC---------------------------DISLWSGSNFLRLRKKIK 279 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEE---------------------------Eeeeeccccccchhhhhh
Confidence 334456667777765 222222211 11111 122343221 122223
Q ss_pred ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 171 IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 171 ~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
....+.+++.+++|++++.|+.||.|.|++..+-+........|...|+.+.|+||.+++++.+.|..+.|..+.
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 345789999999999999999999999999999888777777899999999999999999999999888877653
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=148.23 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=170.3
Q ss_pred CcEEEEeCC-------CCCEEEEeC-CcEEEEEecCCCce---eee------------------eecCCcceEEEEECcC
Q psy16005 19 QPIVLGGDP-------KGKNFLYTN-GNSVIIRNIENPAI---SDI------------------YTEHSCAVNVAKYSPS 69 (248)
Q Consensus 19 ~v~~~~~s~-------~~~~l~~~~-~~~v~v~~~~~~~~---~~~------------------~~~~~~~v~~~~~s~~ 69 (248)
.+.|++|-. .|+++|.|. +..|.|||++-... ..+ -.+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345666642 367999998 99999999863211 001 1268888999999874
Q ss_pred -CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC-CCEEEEEeCCcE-EEEEccC----------CCCC
Q psy16005 70 -GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD-NQRMISIVENGA-KVSSLPI----------DYEP 136 (248)
Q Consensus 70 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~-~i~~~~~----------~~~~ 136 (248)
.+.||+||.|.+|++||+.++++ ...+..|...|.++.|+|. ...|++|+.++. .+.+.+. ...+
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p--~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKP--KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCc--ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 46889999999999999999994 4677789999999999994 678888887764 7877762 3557
Q ss_pred ceeEeCCCCC-EEEEEcCCCeEEEEE---CCceeeeec-ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 137 SSISLDHEHG-LVAVGGADSKISIVE---NGAKVSSLP-IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~~~i~~~~---~~~~~~~~~-~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
..++|.|... .++++..||.++-+| .++++.++. |..++.++++++.-. ++++++.|+.|++|++.........
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 7888988765 666778999999999 456677765 667899999988554 7889999999999999765442221
Q ss_pred ccc-CCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCCC
Q psy16005 211 ELD-HLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 211 ~~~-~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~ 247 (248)
... .-+...|.++.|+-. .++.|+..+.++|||+.+.
T Consensus 413 ~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 111 123467778888865 4566777788999998664
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=155.51 Aligned_cols=219 Identities=12% Similarity=0.157 Sum_probs=171.8
Q ss_pred ccCCcEE-EEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 16 QRGQPIV-LGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 16 ~~~~v~~-~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
+.+-|.+ +++-+ ++-.+++|+ |..+.+|...+..+...+.+|...|.+++...++. +++||.|.++++|....-.
T Consensus 56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~- 133 (745)
T KOG0301|consen 56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV- 133 (745)
T ss_pred CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh-
Confidence 4455554 66664 333455555 99999999999999999999999999999887777 9999999999999875433
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc--------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-C
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP--------IDYEPSSISLDHEHGLVAVGGADSKISIVE-N 162 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 162 (248)
..+++|+..|++++.-|++ .+++++.|. +++|.-. +...++.+++-+++ .+++++.||.|+.|+ .
T Consensus 134 ---~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 134 ---YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD 208 (745)
T ss_pred ---cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc
Confidence 5689999999999999988 555666555 6999842 34456777777665 467889999999999 5
Q ss_pred Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 163 GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
++.+..+. +..-+.++...+++..++++++|++++||+.. ++...... ....|+++.+-++|. +++|++||.|+|
T Consensus 209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-PttsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-PTTSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-CccceEEEEEeeCCC-EEEeccCceEEE
Confidence 87777665 44457788878888899999999999999987 44333331 233799999988887 788889999999
Q ss_pred EECC
Q psy16005 242 YRVP 245 (248)
Q Consensus 242 w~~~ 245 (248)
|..+
T Consensus 285 fT~~ 288 (745)
T KOG0301|consen 285 FTVD 288 (745)
T ss_pred EEec
Confidence 9865
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=157.49 Aligned_cols=213 Identities=13% Similarity=0.164 Sum_probs=171.0
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
...|.+++. ++.+|++++ +++|.+|.+..++.-..+....-++.+++|+.+|+++|.||.|-.|++-++.+... .
T Consensus 56 g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~--~ 131 (933)
T KOG1274|consen 56 GELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ--E 131 (933)
T ss_pred CceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch--h
Confidence 344555544 455777776 89999999999888777777788999999999999999999999999999988774 3
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------------CCCceeEeCCCCCEEEEEcCCCe
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------------YEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
..+.+|.++|.++.|+|++++|++.+-+| +++|+++.. .....++|+|++..+++...|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 78889999999999999999999998777 599998532 23457799999999999999999
Q ss_pred EEEEECC--ceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 157 ISIVENG--AKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 157 i~~~~~~--~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
|++|+.. .....+. +...+.+++|+|+|+|||+++.||.|.|||.++-+. ......|.+++|.|+...+-
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeE
Confidence 9999833 3333332 233478999999999999999999999999998322 23456799999999987665
Q ss_pred EEcCCCe
Q psy16005 232 ASDAHRK 238 (248)
Q Consensus 232 ~~~~d~~ 238 (248)
.....|.
T Consensus 287 ~~~~~g~ 293 (933)
T KOG1274|consen 287 LITALGT 293 (933)
T ss_pred EEeeccc
Confidence 4444443
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=152.19 Aligned_cols=198 Identities=17% Similarity=0.259 Sum_probs=158.7
Q ss_pred eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEE
Q psy16005 51 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSS 129 (248)
Q Consensus 51 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~ 129 (248)
...+..|.+.+..+.|-++...|++|+.|..|++|++..++......+.+..++++.+.|.++++++++++.++ .++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 34566899999999999998999999999999999998877555567778888999999999999998888777 59999
Q ss_pred ccC----------CCCCceeEeC---------------------------------------CCCCEEEEEcCCCeEEEE
Q psy16005 130 LPI----------DYEPSSISLD---------------------------------------HEHGLVAVGGADSKISIV 160 (248)
Q Consensus 130 ~~~----------~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~i~~~ 160 (248)
+.. ...++++.+. .....++++..|++|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFW 327 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEE
Confidence 741 1111111111 113345677788889999
Q ss_pred E--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc---CCcCeEEEEEcCCCcEEEEEcC
Q psy16005 161 E--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 161 ~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
| ........+....++++..++++..+.+.+.|..+.++|+++.+....+... .....+.+.|||++.|+++|+.
T Consensus 328 D~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 328 DIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred eccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 8 6667778888889999999999999999999999999999998765443311 2334899999999999999999
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
||.|+||++.+++
T Consensus 408 dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 408 DGSVYIWSVFTGK 420 (459)
T ss_pred CCcEEEEEccCce
Confidence 9999999998875
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-23 Score=157.30 Aligned_cols=231 Identities=13% Similarity=0.127 Sum_probs=183.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC--ceeeeeecCCcceEEEEE-CcCCcEEEEEccCCeEEEEECCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP--AISDIYTEHSCAVNVAKY-SPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~--~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
..|...|+.+....+|+.|++++ |-+|++|+...+ -...++..|.+.|.|+++ .++...+|+|+-|+.|.+||+++
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~ 149 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT 149 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence 35788899999999998888887 999999998876 456778899999999999 77889999999999999999997
Q ss_pred Cce--------eeeeecc-CCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEE
Q psy16005 90 KEH--------ILKNEFH-PIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVA 149 (248)
Q Consensus 90 ~~~--------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~ 149 (248)
+.. +....+. ++...|++++-++.|..+++|+.++ +++|+-+. ...++.+..+++|+.++
T Consensus 150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~l 229 (735)
T KOG0308|consen 150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL 229 (735)
T ss_pred cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEe
Confidence 732 1122333 7888999999999998999888766 49999653 34567888999999999
Q ss_pred EEcCCCeEEEEECCc--eeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 150 VGGADSKISIVENGA--KVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 150 ~~~~~~~i~~~~~~~--~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
+++.||+|++||.++ ++.++. +...+.++..+|+-..+++|+.||.|..=|+++.... ........+|..+..+.+
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlick~daPv~~l~~~~~ 308 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLICKEDAPVLKLHLHEH 308 (735)
T ss_pred ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEeecCCCchhhhhhccc
Confidence 999999999999554 445544 4555889999999999999999999999999985332 222234556777777655
Q ss_pred CcEEEEEcCCCeEEEEECC
Q psy16005 227 NEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~ 245 (248)
.+-+-+++.|+.|+-|...
T Consensus 309 ~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 309 DNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cCCceeeeccccceecCCc
Confidence 5555666778888888653
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-24 Score=165.07 Aligned_cols=203 Identities=21% Similarity=0.329 Sum_probs=172.2
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
.-.+++|+.. .+..|...+.++..-..++.+++|+.|..+-+|.+.....+ ..+.+|..+|.++.|+++...
T Consensus 13 ~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i--~S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 13 ATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI--TSLTGHESPIESLTFDTSERL 84 (825)
T ss_pred eeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh--heeeccCCcceeeecCcchhh
Confidence 4456677743 34578888888888678899999999999999998776644 568899999999999999999
Q ss_pred EEEEeCCc-EEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEECC--ceeeeec-ccCCCceEEEcC
Q psy16005 117 MISIVENG-AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVENG--AKVSSLP-IDYEPSSISLDH 182 (248)
Q Consensus 117 l~~~~~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-~~~~~~~~~~s~ 182 (248)
|++++.+| +++||+... ..+.++.|+|-+.+.+.++.|..+++||.. .+...+. +...+.++.|+|
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP 164 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC
Confidence 99999886 599998633 457788999999999999999999999944 3444444 445578899999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 183 EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|++++.|++|..++|||+..++....+. .|.+.+..+.|+|..-.+++|+.|+++++||+++.+
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred CCceeeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 99999999999999999999999877765 799999999999999999999999999999998753
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=147.11 Aligned_cols=189 Identities=15% Similarity=0.234 Sum_probs=157.8
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCcE-EEEEccCC--
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENGA-KVSSLPID-- 133 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~-~i~~~~~~-- 133 (248)
.+.|+++.|+|....|++++.|++++||.+..........+.--..+|.+..|.|+|+ .+++++.... ..|++...
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4679999999999999999999999999998665443344444468999999999999 7777776664 78887432
Q ss_pred -----------CCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 134 -----------YEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 134 -----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
.....+..+|++++++..+..|.|.+.. +++.+..+.....+..++|+.|++.|++.+.+|.|++||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 2345778899999999999999999987 778888999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 201 LNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++...++.++.....-.=++++.|+++.+||+|+..|.|.|||.++
T Consensus 373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 9999887766543322336788889999999999999999999654
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=148.97 Aligned_cols=230 Identities=14% Similarity=0.155 Sum_probs=177.1
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCc--EEEEEccCCeEEEEEC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF--YIASGDISGKVRIWDT 87 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~ 87 (248)
.+-.+|.+.|.++...|.|..|++|+ ||+|+||.+.++.+++.+. ..+.|.|++|+|.+. .||++-.. .+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeCc
Confidence 34457999999999999999999998 9999999999999999884 467899999999654 34444332 3444433
Q ss_pred CCC---------------------------------ceee--eeeccCCCCCeeEEEEecCCCEEEEEeCC----cEEEE
Q psy16005 88 VNK---------------------------------EHIL--KNEFHPIGGPIKDIAWSPDNQRMISIVEN----GAKVS 128 (248)
Q Consensus 88 ~~~---------------------------------~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----~~~i~ 128 (248)
.-| +... ....-.|...|..+.|+..|.||++...+ ++.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 211 0000 01122467789999999999999998753 35677
Q ss_pred Ecc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc--eeeee-cccCCCceEEEcCCCCEEEEEcCCCc
Q psy16005 129 SLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENGA--KVSSL-PIDYEPSSISLDHEHGLVAVGGADSK 195 (248)
Q Consensus 129 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~ 195 (248)
++. ..+.+..+.|+|...+++++++ ..|++||..+ .+..+ +....+..++++|.|..|++|+.|+.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 764 2456788999999998888776 5799999333 22222 34455788999999999999999999
Q ss_pred EEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 196 VHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 196 v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
+..||+.-.....+...-|...+++|+|++.-.++++++.||++.|+.
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999877666666657999999999999999999999999999885
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=154.45 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=90.1
Q ss_pred CceeEeCC-CCCEEEEEcCCCeEEEEE---CC------ceeeeec-ccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCC
Q psy16005 136 PSSISLDH-EHGLVAVGGADSKISIVE---NG------AKVSSLP-IDYEPSSISLDH-EHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 136 ~~~~~~~~-~~~~~~~~~~~~~i~~~~---~~------~~~~~~~-~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~ 203 (248)
++.+.|+| |...|++++.||.|++|. .+ .....+. +...+..+.|+| -...|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 34556776 456899999999999998 11 1122222 345688999999 345899999999999999999
Q ss_pred CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+....+. +|.+.|..++|||||+.+++.+.||+|++|+-+.+|
T Consensus 710 ~~~~~~l~-gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 710 AKLYSRLV-GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhheec-cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 98866665 899999999999999999999999999999987654
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=146.63 Aligned_cols=207 Identities=18% Similarity=0.269 Sum_probs=169.1
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
.-.|++......++++|+ .+.|+|||+......+.+++|...|+++.++-...+||+++..|.|.|..+.++... ..
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~ 158 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TT 158 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--cc
Confidence 344555555667888887 899999999977777889999999999999998899999999999999999988744 33
Q ss_pred ccCC-CCCeeEEEEecCCCEEE-EEeCCcE-EEEEccC-----------CCCCceeEeCCCCC-EEEEEcCCCeEEEEEC
Q psy16005 98 FHPI-GGPIKDIAWSPDNQRMI-SIVENGA-KVSSLPI-----------DYEPSSISLDHEHG-LVAVGGADSKISIVEN 162 (248)
Q Consensus 98 ~~~~-~~~v~~~~~~~~~~~l~-~~~~~~~-~i~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~ 162 (248)
+... ...|+-+.|+|..+.++ +++++|+ .+||... ..+...++|+|.+. ++++.+.|..|.+||.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 3322 34567899999877655 4566665 9999863 34557889998665 7778999999999995
Q ss_pred C--ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 163 G--AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 163 ~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
+ .....+....+...++|+++|.+|++|+..|.|..||++..+........|...|++++|-|..
T Consensus 239 ~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 4 3455666778889999999999999999999999999999888777777899999999998764
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=142.18 Aligned_cols=231 Identities=15% Similarity=0.219 Sum_probs=167.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC--------C--------CceeeeeecCCcceEEEEECcCCcEEEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE--------N--------PAISDIYTEHSCAVNVAKYSPSGFYIASG 76 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--------~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 76 (248)
..|.+.|+++.|+|+|+.|++|+ +|.+.+|... + -...+.+.+|...|..++|+|++.+++++
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 56889999999999999999998 7899999765 2 11234566899999999999999999999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc------------------------
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP------------------------ 131 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~------------------------ 131 (248)
+.|..+++||+..|+.. ..+.+|...+..++|.|-++++++-+.+. .+...+.
T Consensus 142 s~dns~~l~Dv~~G~l~--~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 142 SVDNSVRLWDVHAGQLL--AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eccceEEEEEeccceeE--eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 99999999999999855 67888999999999999999998877654 2222111
Q ss_pred ---------CCCCCceeEeCCCCCEEEEEcC----CC-----eEEEEE---CCceeeeecccCC-CceEEEc--------
Q psy16005 132 ---------IDYEPSSISLDHEHGLVAVGGA----DS-----KISIVE---NGAKVSSLPIDYE-PSSISLD-------- 181 (248)
Q Consensus 132 ---------~~~~~~~~~~~~~~~~~~~~~~----~~-----~i~~~~---~~~~~~~~~~~~~-~~~~~~s-------- 181 (248)
...--+.++|+|+|.++++... .+ ..++++ ..++...++.... ...+.++
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecc
Confidence 0111246678999998886432 22 223443 2222222222111 1122222
Q ss_pred ----------CCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 182 ----------HEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 182 ----------~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|-+..+++++. +.|++||.++-.+......-|-..|++++|++||.+|+..+.||...+-.++..
T Consensus 300 ~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 300 LSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 23345666665 469999999888766665558899999999999999999999998777655543
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=145.48 Aligned_cols=226 Identities=12% Similarity=0.238 Sum_probs=166.9
Q ss_pred CCcEEEEeCCCCCEEEEe--CCcEEEEEecCCC--ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 18 GQPIVLGGDPKGKNFLYT--NGNSVIIRNIENP--AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~--~~~~v~v~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
..+.++.|+....+++.. +|..+++|.-... +....-+.....-.|++......++++|+..+.|+|||++...
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-- 112 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL-- 112 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH--
Confidence 348899999877533332 2788899974322 2222222222244555555556899999999999999998543
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
....+.+|...|+++.++....+|++++.+| +.+..+.. +..++.+.+++..+ +|.+++.+|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 4467889999999999999999999999877 46655532 33455778888766 56678999999999
Q ss_pred ECCce--e-eee-cccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 161 ENGAK--V-SSL-PIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 161 ~~~~~--~-~~~-~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
|.... . ... .|..+...++|+|... +|++.+.|..|.+||.+..+....+. ...+...++|+++|.+|++|..
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEeecC
Confidence 93322 2 222 2455668899999554 77888999999999999877755554 4557899999999999999999
Q ss_pred CCeEEEEECCCC
Q psy16005 236 HRKVVLYRVPDF 247 (248)
Q Consensus 236 d~~i~vw~~~~~ 247 (248)
.|.|..||++..
T Consensus 271 ~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 271 KGELIAYDMRST 282 (673)
T ss_pred CceEEEEecccC
Confidence 999999999754
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=165.09 Aligned_cols=202 Identities=17% Similarity=0.255 Sum_probs=147.7
Q ss_pred cCCcEEEEeCCCCCE----EEEeC-CcEEEEEecCCC------ceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEE
Q psy16005 17 RGQPIVLGGDPKGKN----FLYTN-GNSVIIRNIENP------AISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRI 84 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~----l~~~~-~~~v~v~~~~~~------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i 84 (248)
..+...++|.+.|.. |+.|. ||.|.+||...- ..+.....|++.|..+.|++. +++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999998877 55554 999999997652 234566789999999999995 569999999999999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA 164 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (248)
||+...+......-....+.|.+++|+..-.. .|++++.+|...+||.++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh------------------------------ILAS~s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH------------------------------ILASGSPSGRAVIWDLRK 193 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhH------------------------------HhhccCCCCCceeccccC
Confidence 99988654322212224568889999875433 333445555555555333
Q ss_pred eeeeecc-----cCCCceEEEcCCCC-EEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC-cEEEEEc
Q psy16005 165 KVSSLPI-----DYEPSSISLDHEHG-LVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN-EYLVASD 234 (248)
Q Consensus 165 ~~~~~~~-----~~~~~~~~~s~~~~-~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~ 234 (248)
....+.. ......++|+|+.. .++++++|. .|.+||++......+...+|...|.++.|++.+ ++|++++
T Consensus 194 ~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg 273 (1049)
T KOG0307|consen 194 KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG 273 (1049)
T ss_pred CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc
Confidence 2222221 12246799999775 666666553 599999998776655556899999999999977 7889999
Q ss_pred CCCeEEEEECCCCC
Q psy16005 235 AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 ~d~~i~vw~~~~~~ 248 (248)
.|+.|.+|+.+++|
T Consensus 274 kD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 274 KDNRIICWNPNTGE 287 (1049)
T ss_pred CCCCeeEecCCCce
Confidence 99999999999976
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-19 Score=139.09 Aligned_cols=226 Identities=12% Similarity=0.111 Sum_probs=155.5
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecC-CCce--eeeeecCCcceEEEEECcCCcEEEEEcc-CCeEEEEECCCCc
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIE-NPAI--SDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKE 91 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~-~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~ 91 (248)
+.+..++++|++++|+++. ++.|.+|+++ ++.. .... ........++++|++++|++++. ++.|.+|++.+..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 5677899999999988764 7889999986 3332 2222 22335678999999998888764 7899999997432
Q ss_pred ee-eeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEccCC----------------CCCceeEeCCCCCEEEEEc
Q psy16005 92 HI-LKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPID----------------YEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 92 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 152 (248)
.+ .......+...+..++++|++++++++.. +.+.+|++... ..+..+.++|++++++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence 11 11111122345678899999999977663 45688887532 2346789999999988776
Q ss_pred C-CCeEEEEECC----c--eeeeecc-------cCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCcccccC---
Q psy16005 153 A-DSKISIVENG----A--KVSSLPI-------DYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAELDH--- 214 (248)
Q Consensus 153 ~-~~~i~~~~~~----~--~~~~~~~-------~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~--- 214 (248)
. ++.|.+|+.. + .+..+.. ......+.++|++++++++.. ++.|.+|++.......... ++
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~~~~~ 272 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-GHQPT 272 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-EEEec
Confidence 6 8999999832 2 1222211 111235889999999999865 6899999996543211111 11
Q ss_pred CcCeEEEEEcCCCcEEEEEcC-CCeEEEEECC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDA-HRKVVLYRVP 245 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~~ 245 (248)
......+.|+|||++|+++.. +++|.+|+++
T Consensus 273 ~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 273 ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 124568899999999998765 8999999874
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=146.05 Aligned_cols=228 Identities=16% Similarity=0.205 Sum_probs=165.1
Q ss_pred EEEEeCC--CC-CEEEEeC-CcEEEEEecCCCcee------eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 21 IVLGGDP--KG-KNFLYTN-GNSVIIRNIENPAIS------DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 21 ~~~~~s~--~~-~~l~~~~-~~~v~v~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.+..|++ +. ..|+.+. +|.|.++|....... .....|.+.|..+.|-|....|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 4456655 33 3556665 899999998654322 445589999999999997778999999999999999998
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCC-----------------------------------
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPID----------------------------------- 133 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~----------------------------------- 133 (248)
+..-...+.+|...+.+++|.|++. .|++|+.|+ +.+|+++..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 8765556789999999999999665 556667666 599997421
Q ss_pred --CCCce---eEeCCCCCEEEEEcC-CCeEEEEECCceeeeec--------c------cCCCceEEEcCCCCEEEEEcCC
Q psy16005 134 --YEPSS---ISLDHEHGLVAVGGA-DSKISIVENGAKVSSLP--------I------DYEPSSISLDHEHGLVAVGGAD 193 (248)
Q Consensus 134 --~~~~~---~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~--------~------~~~~~~~~~s~~~~~l~~~~~d 193 (248)
..+.. +.+..|...||+++. |+.|++||..+....+. . ...+.++..+..|.+|.+.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 01112 345567778887776 99999999544322221 1 2235677888888999999999
Q ss_pred CcEEEEEcCCCCCCCccccc-CC--cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELD-HL--GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~-~~--~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+.|++|++.+...-...... +. .--..-..+||+.++++|+.|...++|.+.+.+
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 99999999886654333222 11 111223468999999999999999999998754
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=149.21 Aligned_cols=232 Identities=14% Similarity=0.175 Sum_probs=174.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC--------CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN--------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
..|...|..++|.|....|++++ ++.+.+|+++. -+++.++.+|.++|.|+++.+++..+++|+-||+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 45778899999999999999998 99999999932 2456778899999999999999999999999999999
Q ss_pred EECCCCc--------eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCCC-----------CceeEeCCC
Q psy16005 85 WDTVNKE--------HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDYE-----------PSSISLDHE 144 (248)
Q Consensus 85 wd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~-----------~~~~~~~~~ 144 (248)
|++.... ......+.+|.+.++.+++++....|++++.||. +.|....... +..+.+...
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 9765221 1233567799999999999999888999987775 8998754333 223332221
Q ss_pred CCEE-EEEcCCCeEEEEE--CCceeeeecc--------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc
Q psy16005 145 HGLV-AVGGADSKISIVE--NGAKVSSLPI--------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD 213 (248)
Q Consensus 145 ~~~~-~~~~~~~~i~~~~--~~~~~~~~~~--------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 213 (248)
.... ++...-+.-.+++ ....+..+.. ...++-+.++|.+.+.+++.+|+.|+++|..+++.+.... .
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a 529 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-A 529 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-e
Confidence 1111 1111111111111 2222222221 1235678889999999999999999999999999876665 7
Q ss_pred CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 214 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
|...++++++.|+|.+|++++.|+.+++|.+..
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhccc
Confidence 899999999999999999999999999998854
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-21 Score=141.52 Aligned_cols=202 Identities=18% Similarity=0.310 Sum_probs=151.1
Q ss_pred ecCCCceeeeeecCCcceEEEEECcCC--cEEEEEccCCeEEEEECCCCc--eeeeeeccCCCCCeeEEEEecC-CCEEE
Q psy16005 44 NIENPAISDIYTEHSCAVNVAKYSPSG--FYIASGDISGKVRIWDTVNKE--HILKNEFHPIGGPIKDIAWSPD-NQRMI 118 (248)
Q Consensus 44 ~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 118 (248)
|+..-.....++-+..+|++++|+|.. +++|+|+.-|+|-+||+.+.+ ......+..|..+|.++.|+|. ...++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 333344445566788999999999943 688999999999999996332 2233567789999999999994 34666
Q ss_pred EEeCCc-EEEEEccCC------------CCCceeEeCCCCCEEEEEcCCCeEEEEECCce---eeee-cccCCCceEEEc
Q psy16005 119 SIVENG-AKVSSLPID------------YEPSSISLDHEHGLVAVGGADSKISIVENGAK---VSSL-PIDYEPSSISLD 181 (248)
Q Consensus 119 ~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~-~~~~~~~~~~~s 181 (248)
+.+.|| +++-++... .....+.++.+...++.+..=|.+.+||.+.. ...+ -+...++.++++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 666665 577776421 22345667777788888888788899993322 2222 245689999999
Q ss_pred CCCC-EEEEEcCCCcEEEEEcCCCCCCC---cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 182 HEHG-LVAVGGADSKVHIYELNNKSLSP---KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 182 ~~~~-~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|... +|++++.|++.+|||++.-.... .....|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9665 88999999999999998744333 2333699999999999999889999999999999973
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-21 Score=141.16 Aligned_cols=196 Identities=15% Similarity=0.223 Sum_probs=146.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC---------CCceeeeeecCCcceEEEEECcC--CcEEEEEccCCe
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE---------NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGK 81 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~---------~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~ 81 (248)
..|...|+|+.|+-||.++++|+ ||.|.+|.+. +.++.+.+..|+-+|+++...+. ..+|+|+|.|.+
T Consensus 120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t 199 (476)
T KOG0646|consen 120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT 199 (476)
T ss_pred HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence 56889999999999999999998 9999999764 23567788899999999998774 468999999999
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
+++||+..+..+....++ ..+.+++.+|-++.++.|+++|. .+.++..-. ..+. +=..+.+
T Consensus 200 ~k~wdlS~g~LLlti~fp---~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~-~~~~--------------~v~~k~~ 261 (476)
T KOG0646|consen 200 IKLWDLSLGVLLLTITFP---SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS-GQSA--------------GVNQKGR 261 (476)
T ss_pred EEEEEeccceeeEEEecC---CcceeEEEcccccEEEecCCcceEEeeehhcCC-cccc--------------ccccccc
Confidence 999999999877665554 78999999999999998888774 222221100 0000 0000111
Q ss_pred E-CCceeeeec-cc--CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 161 E-NGAKVSSLP-ID--YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 161 ~-~~~~~~~~~-~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
+ .+.....+. +. ..++|++++-||..|++|+.||.|+|||+.+.++++... ...++|+.+.+.|-.+
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~-~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ-TSKGPVTNLQINPLER 332 (476)
T ss_pred ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh-hhccccceeEeecccc
Confidence 1 111122221 22 378999999999999999999999999999999877665 2578899998866433
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=138.67 Aligned_cols=194 Identities=20% Similarity=0.321 Sum_probs=142.0
Q ss_pred cccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCcee---eeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPAIS---DIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 88 (248)
.|.+.=.+++|||-. ..|++|. -+.|++|...++.-. ..+.+|+..|..++|||. ...|++||.||+|+|||++
T Consensus 209 ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 209 GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred ccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence 477888899999932 2466665 689999998876532 345689999999999994 5789999999999999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-----CC
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-----NG 163 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~ 163 (248)
.+..........|.+.|+.+.|+..-.+|++ |+.||++++|| .+
T Consensus 289 s~~~~~~~~~kAh~sDVNVISWnr~~~lLas-------------------------------G~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 289 SGPKKAAVSTKAHNSDVNVISWNRREPLLAS-------------------------------GGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred CCCccceeEeeccCCceeeEEccCCcceeee-------------------------------cCCCceEEEEEhhhccCC
Confidence 8854444555889999999999876554544 55556666666 23
Q ss_pred ceeeeec-ccCCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCC---------------CCCcccccC--CcCeEEEEEc
Q psy16005 164 AKVSSLP-IDYEPSSISLDHE-HGLVAVGGADSKVHIYELNNKS---------------LSPKAELDH--LGPVTDCSFS 224 (248)
Q Consensus 164 ~~~~~~~-~~~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~---------------~~~~~~~~~--~~~v~~~~~s 224 (248)
+++..+. |..+++++.|+|. ...|++++.|.+|.|||+.... ..+++..-| ...+..+.|+
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH 417 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWH 417 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheec
Confidence 4455554 5677899999994 4588889999999999985422 122233334 3468889999
Q ss_pred CCCc-EEEEEcCCCeE
Q psy16005 225 PSNE-YLVASDAHRKV 239 (248)
Q Consensus 225 ~~~~-~l~~~~~d~~i 239 (248)
+.-. +|++.+.||.-
T Consensus 418 ~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 418 RQIPGLLVSTAIDGFN 433 (440)
T ss_pred cCCCCeEEEeccccee
Confidence 8754 67777777643
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=145.74 Aligned_cols=193 Identities=17% Similarity=0.327 Sum_probs=155.9
Q ss_pred EEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEE
Q psy16005 31 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 31 ~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 110 (248)
++++.+||.+.+.+ ..++..+.+..|.+.+.+-.|+|||.-|++++.||.|++|.-.. - .+..+.....+|+|++|
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-M--LRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-M--LRSTVVQNEESIRCARW 153 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-h--HHHHHhhcCceeEEEEE
Confidence 45555699999987 66788888889999999999999999999999999999998543 2 23444455689999999
Q ss_pred ecCCCEEEEEeCCcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceee-eecccCCCceE
Q psy16005 111 SPDNQRMISIVENGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVS-SLPIDYEPSSI 178 (248)
Q Consensus 111 ~~~~~~l~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~~~~~~~~~ 178 (248)
.|+.+.++.+..+.+.+-.+. +++-+.++.|++..+++++|++|-..++|| .|..+. .-.++.+++++
T Consensus 154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSV 233 (737)
T ss_pred CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeee
Confidence 999999998888777665553 345677899999999999999999999999 555544 44578889999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 179 SLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 179 ~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
+|+|+ +.+++++.+ +++ +..+..+.|..++|||||..++.|+..|.+.+
T Consensus 234 a~npd-~~~~v~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeccc-cceeeeeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 99999 677777643 233 23346678999999999999999988887764
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=132.14 Aligned_cols=230 Identities=13% Similarity=0.194 Sum_probs=175.2
Q ss_pred cccccccCCcEEEEeCCCCCE-EEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc---CCcEEEEEccCCeEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKN-FLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP---SGFYIASGDISGKVRIW 85 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~-l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw 85 (248)
+.+..|+-.|..+.|-|-..- +.+++ |.++++||..+.+....++ ..+.|.+-++|| ...++|+|..+-.|++.
T Consensus 95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 455678889999999995554 44455 9999999999988877774 567899999998 34578889999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEE-EEeCCc-EEEEEccC-------------------------CCCCce
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMI-SIVENG-AKVSSLPI-------------------------DYEPSS 138 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~-~~i~~~~~-------------------------~~~~~~ 138 (248)
|+..|. ....+.+|.+.|.++.|+|...+++ +++.|+ +++||++. ...+..
T Consensus 174 Di~SGs--~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng 251 (397)
T KOG4283|consen 174 DIASGS--FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG 251 (397)
T ss_pred eccCCc--ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence 999998 4478999999999999999887654 555555 69999852 133567
Q ss_pred eEeCCCCCEEEEEcCCCeEEEEECCceeeeecc-----cCCCceEEE---cCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 139 ISLDHEHGLVAVGGADSKISIVENGAKVSSLPI-----DYEPSSISL---DHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~---s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
++|+.++.++++++.|..+++|+...-..++.. ...-..+++ +.+...++.--.++.+.++++-.+..+..+
T Consensus 252 la~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 252 LAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred eeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEee
Confidence 899999999999999999999993222111111 111111111 333344444455688999999999887666
Q ss_pred cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 211 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
. .|...|.+..+-|+-+...++..|+.|..|-.
T Consensus 332 ~-~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 S-THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred e-cccceeeEEeecCchhhhhccccCCccccccc
Confidence 5 68888999999999999999999999999864
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=134.64 Aligned_cols=215 Identities=13% Similarity=0.155 Sum_probs=156.7
Q ss_pred EEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEEEEECCCCceeeeeeccCCC-CCee
Q psy16005 31 NFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-GPIK 106 (248)
Q Consensus 31 ~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~ 106 (248)
.+|++ +.|.|++||..+++.+..+++++..+..++|.. ....+.+++.||+|++||++............+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 35544 699999999999999999999999999999987 4678999999999999999988776666766665 4666
Q ss_pred EEEEecCCCEEEEEeCC-----cEEEEEccCC------------CCCceeEeCCCC-CEEEEEcCCCeEEEEECCc----
Q psy16005 107 DIAWSPDNQRMISIVEN-----GAKVSSLPID------------YEPSSISLDHEH-GLVAVGGADSKISIVENGA---- 164 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~-----~~~i~~~~~~------------~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~---- 164 (248)
+++....++.++++.+. .+.+||++.. ..++++.|+|.. ++|++|+.||.+.++|..+
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 77776677777777532 3588998643 457899999864 6899999999999999432
Q ss_pred --eeeeecccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCC------------------------------------
Q psy16005 165 --KVSSLPIDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKS------------------------------------ 205 (248)
Q Consensus 165 --~~~~~~~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~------------------------------------ 205 (248)
.+..+.+...+.++.|..++ +.|.+-+......+|+++.+.
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 23334444455666665544 234444445555555554331
Q ss_pred -------------------------CCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 206 -------------------------LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 206 -------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.+..+..+|...|+++.|...+.++++|+.||.+.+|..+
T Consensus 282 ~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred EEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 1112222366678888888888899999999999999853
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-20 Score=131.47 Aligned_cols=184 Identities=16% Similarity=0.263 Sum_probs=140.4
Q ss_pred eEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------
Q psy16005 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------ 133 (248)
Q Consensus 61 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------ 133 (248)
..|+.|++.|.+||+|..||.|.|||+.+.. ....+.+|..+|.+++|++||+.|++++.|. +.+|++..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 6899999999999999999999999999877 3467889999999999999999999999776 589998654
Q ss_pred ---CCCceeEeCCCCC-EEEEEcCCCeEEEEECC-ceeeeecc------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcC
Q psy16005 134 ---YEPSSISLDHEHG-LVAVGGADSKISIVENG-AKVSSLPI------DYEPSSISLDHEHGLVAVGGADSKVHIYELN 202 (248)
Q Consensus 134 ---~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~ 202 (248)
.++....|+|... ..++.-.+..-.+.+.. .....++. .....+..|++.|+++++|...|.+.+||..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 4555666666443 22222222223333311 11122221 1223445689999999999999999999999
Q ss_pred CCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 203 NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 203 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+.+++..+.......|..+.++..|++|+.-+.|+.|+.|++++
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 99887666544457899999999999999999999999999863
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=137.11 Aligned_cols=226 Identities=15% Similarity=0.216 Sum_probs=175.8
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
...+|......++.+|+.+.+++++ |+.+++|+ ..++.-.. .-..++.|+.|+|.| .+|.|+..|...+.|.++.
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence 3446778899999999999999887 99999999 33333222 346789999999999 8999999999999999986
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC------------CCCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI------------DYEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
..+. +...+.++.+++|+|+|.+|+.++.|+. .+|.+.. ...++.+.|++|++++.+.+.|-.|
T Consensus 439 ~lv~---~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~ei 515 (626)
T KOG2106|consen 439 DLVT---IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEI 515 (626)
T ss_pred eeEE---EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEE
Confidence 6442 2222789999999999999999998774 6776642 3567899999999999999999999
Q ss_pred EEEECCce-----eeeec----------------ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--CCcccccC
Q psy16005 158 SIVENGAK-----VSSLP----------------IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--SPKAELDH 214 (248)
Q Consensus 158 ~~~~~~~~-----~~~~~----------------~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~ 214 (248)
..|..+.. ++.++ ....++.++-+.+.+++++|...|.|++|...--+. ......+|
T Consensus 516 LyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh 595 (626)
T KOG2106|consen 516 LYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH 595 (626)
T ss_pred EEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc
Confidence 99973321 11111 122245556677788999999999999998754333 22333479
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.+.|++++|.-+...+++.+.|..|..|++
T Consensus 596 s~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 596 SSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999999999999999998889999999987
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=130.46 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=166.0
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC-CCCc
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT-VNKE 91 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~ 91 (248)
..+|+|.+|++|+..+|.+- ...+.||.....+ ..+++..|...|++++|+|..+.|++++.|..-++|.. ..+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 46899999999999999986 6799999876654 56788899999999999999999999999999999998 5555
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc--------------CCCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP--------------IDYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
......+..++...+++.|+|.++.+++++...+ .+|.+. ....+.+++|+|++-++++|+.|+.
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK 169 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence 5555667788999999999999999999987764 666553 3345689999999999999999999
Q ss_pred EEEEE------C--------------Cceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-CCcccccC
Q psy16005 157 ISIVE------N--------------GAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-SPKAELDH 214 (248)
Q Consensus 157 i~~~~------~--------------~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~ 214 (248)
.+++. . |+.+.++ .....+..+.|+|+|..|+-.+.|..+.+-|...... +......+
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~ 249 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ 249 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc
Confidence 99875 0 1112222 2234468899999999999999999999999877652 22222233
Q ss_pred CcCeEEEEEcCCC
Q psy16005 215 LGPVTDCSFSPSN 227 (248)
Q Consensus 215 ~~~v~~~~~s~~~ 227 (248)
-+..++.|-.+.
T Consensus 250 -lP~ls~~~ise~ 261 (361)
T KOG1523|consen 250 -LPLLSVSWISEN 261 (361)
T ss_pred -CCceeeEeecCC
Confidence 567777776543
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=129.34 Aligned_cols=227 Identities=13% Similarity=0.139 Sum_probs=156.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.|.+.++++.|-.+++ |+.|. .|.|++|++.+......+. .+...|+.+.--|+ ..+.+-+.|+.+.+|++..+..
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 6788999999999887 55554 8999999999988877777 56788999998887 5688889999999999876432
Q ss_pred eeeeecc---------------------------------------------------CCCCCeeEEEEec-CC-CE-EE
Q psy16005 93 ILKNEFH---------------------------------------------------PIGGPIKDIAWSP-DN-QR-MI 118 (248)
Q Consensus 93 ~~~~~~~---------------------------------------------------~~~~~v~~~~~~~-~~-~~-l~ 118 (248)
+....+. +..+.+.+..+.. ++ +. ++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 2111100 0011223333211 12 22 23
Q ss_pred EEeCCc-EEEEEccCC--------------------CCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeee------cc
Q psy16005 119 SIVENG-AKVSSLPID--------------------YEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSL------PI 171 (248)
Q Consensus 119 ~~~~~~-~~i~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~ 171 (248)
++.++| +.+|++..+ .++.++.+.+.-..=++++.+..+..|........+ ..
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 333444 466766432 234445555444444455555566665522211111 11
Q ss_pred -cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 172 -DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 172 -~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
...+..+.+-||++.+|+++.|+.|++|+.++......+. -|.+.|++++|+|+...+|+++.|+.|.+|++
T Consensus 250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2346778899999999999999999999999999877665 69999999999999999999999999999986
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=127.74 Aligned_cols=190 Identities=19% Similarity=0.286 Sum_probs=145.0
Q ss_pred ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC--ceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEE
Q psy16005 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSS 129 (248)
Q Consensus 55 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~ 129 (248)
.+|.+-|.++.|.+.|+.+|+|+.|++|+|||.+.. ..........|.+.|..+.|.+ -|+.+++++.|+ +.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478899999999999999999999999999997543 3345566788999999999965 489999999776 48887
Q ss_pred cc-------------------CCCCCceeEeCCC--CCEEEEEcCCCeEEEEECCce--------eeeec--------cc
Q psy16005 130 LP-------------------IDYEPSSISLDHE--HGLVAVGGADSKISIVENGAK--------VSSLP--------ID 172 (248)
Q Consensus 130 ~~-------------------~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--------~~~~~--------~~ 172 (248)
-. ....+..+.|.|. |-.+++++.||.+++|+.... ..++. ..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 2345678888875 568999999999999983222 11121 22
Q ss_pred CCCceEEEcCC---CCEEEEEcCC-----CcEEEEEcCCCC----CCCcccccCCcCeEEEEEcCCC----cEEEEEcCC
Q psy16005 173 YEPSSISLDHE---HGLVAVGGAD-----SKVHIYELNNKS----LSPKAELDHLGPVTDCSFSPSN----EYLVASDAH 236 (248)
Q Consensus 173 ~~~~~~~~s~~---~~~l~~~~~d-----~~v~i~d~~~~~----~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 236 (248)
....|+.|+|. ..+||+|+.+ +.++||....+. .+..+ .+|..+|++++|.|+- ..||+++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEEeecC
Confidence 33468889873 3488998866 478899876543 12223 3799999999999973 578999999
Q ss_pred CeEEEEECCC
Q psy16005 237 RKVVLYRVPD 246 (248)
Q Consensus 237 ~~i~vw~~~~ 246 (248)
| |+||++..
T Consensus 249 g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 G-VRIFKVKV 257 (361)
T ss_pred c-EEEEEEee
Confidence 9 99999874
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=132.57 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=150.2
Q ss_pred cccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCC-------ceeeeeecCCcceEEEEECcC-CcEEEEEccCCeE
Q psy16005 13 PRTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENP-------AISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKV 82 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i 82 (248)
-.+|++++..++|+|- ...+|+|+ |.+|.||.+..+ +++..+.+|...|.-++|+|. .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 3579999999999994 56677777 889999998754 345677899999999999995 4788999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.+||+.+++.+ ..+. |.+.|+++.|+.||.+|++ .+.|+.|++||
T Consensus 157 ~iWnv~tgeal--i~l~-hpd~i~S~sfn~dGs~l~T-------------------------------tckDKkvRv~dp 202 (472)
T KOG0303|consen 157 SIWNVGTGEAL--ITLD-HPDMVYSMSFNRDGSLLCT-------------------------------TCKDKKVRVIDP 202 (472)
T ss_pred EEEeccCCcee--eecC-CCCeEEEEEeccCCceeee-------------------------------ecccceeEEEcC
Confidence 99999999976 3444 9999999999988876655 56667777777
Q ss_pred -CCceeeeec-c-cCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCCCCcc-cccCCcCeEEEEEcCCCcEEEEE-
Q psy16005 162 -NGAKVSSLP-I-DYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSLSPKA-ELDHLGPVTDCSFSPSNEYLVAS- 233 (248)
Q Consensus 162 -~~~~~~~~~-~-~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~- 233 (248)
.++.+..-. + ......+.|-.+|.++.+|- .+.++.+||..+-+....+ ..+-.+.|.---|.||.+.++.+
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe
Confidence 444444442 2 22345667777888555553 3678999998876553222 22345667777789998877655
Q ss_pred cCCCeEEEEECCC
Q psy16005 234 DAHRKVVLYRVPD 246 (248)
Q Consensus 234 ~~d~~i~vw~~~~ 246 (248)
-.|+.|+-|.+.+
T Consensus 283 KGD~~IRYyEit~ 295 (472)
T KOG0303|consen 283 KGDSSIRYFEITN 295 (472)
T ss_pred cCCcceEEEEecC
Confidence 4689999998764
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=127.69 Aligned_cols=208 Identities=18% Similarity=0.301 Sum_probs=153.6
Q ss_pred ceecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCce-eeeee-----cCCcceEEEEECc--CCcEEEEEc
Q psy16005 6 KYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI-SDIYT-----EHSCAVNVAKYSP--SGFYIASGD 77 (248)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~-~~~~~-----~~~~~v~~~~~s~--~~~~l~~~~ 77 (248)
.+++..++..+.+.|.|+.|.|++..+++-.++.|.+|+++.+.. ...+. .+....++-+|+| +++.+++.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-
Confidence 456777887788899999999999999999999999999987655 33332 3556788899999 78888875
Q ss_pred cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 78 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
.|+++..||+++..... ..-..|...+..+.|+|+.++ +|++++.|+.|
T Consensus 191 ~d~tl~~~D~RT~~~~~-sI~dAHgq~vrdlDfNpnkq~------------------------------~lvt~gDdgyv 239 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNN-SIEDAHGQRVRDLDFNPNKQH------------------------------ILVTCGDDGYV 239 (370)
T ss_pred CCCcEEEEEccchhhhc-chhhhhcceeeeccCCCCceE------------------------------EEEEcCCCccE
Confidence 47899999999876432 233567888999999997654 35567788888
Q ss_pred EEEECCc---eeeeec-ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCC------------------------CCC
Q psy16005 158 SIVENGA---KVSSLP-IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKS------------------------LSP 208 (248)
Q Consensus 158 ~~~~~~~---~~~~~~-~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~------------------------~~~ 208 (248)
++||.+. .++.++ +..-+.++.|+|.. +++++|+.|..|.+|....-. ++.
T Consensus 240 riWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 240 RIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred EEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 8888443 344443 34457888898844 477888889888888653211 000
Q ss_pred ----cccccCCcCeEEEEEcCCCcEE-EEEcCCCeEEEEECC
Q psy16005 209 ----KAELDHLGPVTDCSFSPSNEYL-VASDAHRKVVLYRVP 245 (248)
Q Consensus 209 ----~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~vw~~~ 245 (248)
.....|...|.+++||.-..++ |+-+.||.+.|=.+.
T Consensus 320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0122588999999999887765 566999999886654
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-20 Score=131.11 Aligned_cols=187 Identities=16% Similarity=0.263 Sum_probs=138.8
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEec-CCCceeeee-------ecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNI-ENPAISDIY-------TEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~-~~~~~~~~~-------~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
...+++|+|||..|++|....|+++|+ ..|.....+ .+..+.+.+++|+| +.+.++.|+...++-|+.-..
T Consensus 160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 456899999999999999999999998 444322211 13467899999999 667999999999999998877
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceee
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVS 167 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (248)
++.+ ..+.+|.+.|+.+.|.++|+.|++++. +.+..|+++....+ +.
T Consensus 240 ~~pl--~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p-----------------------------v~ 288 (406)
T KOG2919|consen 240 RRPL--QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP-----------------------------VY 288 (406)
T ss_pred CCce--eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch-----------------------------hh
Confidence 7754 677799999999999999999999873 44566666532211 11
Q ss_pred eecccCC----CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 168 SLPIDYE----PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 168 ~~~~~~~----~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
.+..+.. ---+...|++++|++|+.||.|++||++...........+...++.++++|--+.+++++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 1111110 11245578999999999999999999998333233343688899999999998888887653
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=141.68 Aligned_cols=199 Identities=17% Similarity=0.219 Sum_probs=147.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
+|...|.+++.+|+|+++|++. ...|++|+..+-.....+.+|.-.|+.++||||+++|++.+.|.++.+|...
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence 6888999999999999999974 2479999999888888899999999999999999999999999999999875
Q ss_pred CCceeeeee---ccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-
Q psy16005 89 NKEHILKNE---FHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA- 164 (248)
Q Consensus 89 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 164 (248)
..... ... .+.|+..|.+..|+|+++++++ ++.|+++++|....
T Consensus 603 ~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaT-------------------------------aSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 603 EDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFAT-------------------------------ASRDKKVKVWEEPDL 650 (764)
T ss_pred cccch-hhhhccccccceEEEEcccCcccceeEE-------------------------------ecCCceEEEEeccCc
Confidence 43321 122 4567777777777777665555 55555666665111
Q ss_pred ---ee---eeecccCCCceEEEcC-----CCCEEEEEcCCCcEEEEEcCCCCCC-----------CcccccCCcCeEEEE
Q psy16005 165 ---KV---SSLPIDYEPSSISLDH-----EHGLVAVGGADSKVHIYELNNKSLS-----------PKAELDHLGPVTDCS 222 (248)
Q Consensus 165 ---~~---~~~~~~~~~~~~~~s~-----~~~~l~~~~~d~~v~i~d~~~~~~~-----------~~~~~~~~~~v~~~~ 222 (248)
.+ ..+++...++.+++.| .+..+++|-+.|.|.+|........ .....+|...|+.+.
T Consensus 651 ~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~ 730 (764)
T KOG1063|consen 651 RDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLL 730 (764)
T ss_pred hhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeE
Confidence 11 2344566778888766 2337889999999999996521110 011124778899999
Q ss_pred EcCC----------CcEEEEEcCCCeEEEEECC
Q psy16005 223 FSPS----------NEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 223 ~s~~----------~~~l~~~~~d~~i~vw~~~ 245 (248)
|.|. ...|++++.|..++++++.
T Consensus 731 w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 731 WRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eccccccccccccceeEEeeecccceeEEeecc
Confidence 9975 2356999999999999875
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-19 Score=139.99 Aligned_cols=224 Identities=15% Similarity=0.194 Sum_probs=170.4
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCC---cEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG---FYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
...||+|+++++...+..|.||...+++++..+.+|..++..+.+.|.. .++++++.+|.|++||...+..+..+..
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 4568999999999999999999999999999999999999999998854 4678999999999999988765432221
Q ss_pred cCCCC--------------------------------------------------------CeeEEEEecCCCEEEEEeC
Q psy16005 99 HPIGG--------------------------------------------------------PIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 99 ~~~~~--------------------------------------------------------~v~~~~~~~~~~~l~~~~~ 122 (248)
..+.. ....+.+++.|++....-.
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~ 180 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM 180 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe
Confidence 11000 0122333333333333333
Q ss_pred CcEEEEEccC--------------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCc------eeeeec-ccCCCceEEEc
Q psy16005 123 NGAKVSSLPI--------------DYEPSSISLDHEHGLVAVGGADSKISIVENGA------KVSSLP-IDYEPSSISLD 181 (248)
Q Consensus 123 ~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-~~~~~~~~~~s 181 (248)
.+..+|.... ....++.+++|.+++++++..||+|.+|..-. ..+.+. |...+++++|+
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence 3344444432 12357789999999999999999999998222 122233 45679999999
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 182 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++|.+|++|+.++.+.+|.+.+++ ++++..-.++|..+.+|||+.+.+....|+.|.+-...+.
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred cCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 999999999999999999999988 3555567889999999999999999999999999887654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=140.40 Aligned_cols=204 Identities=14% Similarity=0.223 Sum_probs=142.2
Q ss_pred ccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEE--ECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIW--DTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw--d~~ 88 (248)
+...+.+.+|||||+.|++++ +..|++||+.+++... +....+....++|+|||+.|+.++ .+|.+.|| |+.
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 456788999999999998875 2479999998876433 222233345789999999888764 67766555 665
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEccCCCC--------CceeEeCCCCCEEEEEcCCCeEE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPIDYE--------PSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
+++. ..+..+...+....|+|||+.|+.+++ +...+|.++.... .....|+|+++.++..+.++ +.
T Consensus 281 ~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~-i~ 356 (429)
T PRK01742 281 GGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDN-VV 356 (429)
T ss_pred CCCe---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCC-EE
Confidence 5543 334456667888999999998887764 3358887753221 13467899999998887765 45
Q ss_pred EEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC--CCCCCCcccccCCcCeEEEEEcCC
Q psy16005 159 IVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN--NKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
.|| .++.. .+........+.|+|||++|+.++.++...+|++. +++....+. .|.+.+..++|+|-
T Consensus 357 ~~Dl~~g~~~-~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-~~~g~~~~p~wsp~ 426 (429)
T PRK01742 357 KQDLTSGSTE-VLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-GSDGQVKFPAWSPY 426 (429)
T ss_pred EEECCCCCeE-EecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-CCCCCCCCcccCCC
Confidence 588 33322 22222334678899999999999999888888763 455444443 57778899999985
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-21 Score=155.50 Aligned_cols=209 Identities=18% Similarity=0.250 Sum_probs=156.5
Q ss_pred cccccccccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCCCceeeeee--cCCcceEEEEECc-CCcEEEEEccCCeEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIENPAISDIYT--EHSCAVNVAKYSP-SGFYIASGDISGKVR 83 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 83 (248)
+... ..|.|.|..+.|++.+. .||+|+ +|.|.|||+.+.+...... ...+.|.+++|+. ....|++++.+|.+.
T Consensus 109 la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 109 LATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred Hhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCce
Confidence 3344 45899999999999766 888886 8999999998866554442 2467899999997 456789999999999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCC-CEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDN-QRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
|||++..+.+...........+..++|+|++ ..+++++++. ..-.|.+||.
T Consensus 188 iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd----------------------------~~PviqlWDl 239 (1049)
T KOG0307|consen 188 IWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD----------------------------SAPVIQLWDL 239 (1049)
T ss_pred eccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC----------------------------CCceeEeecc
Confidence 9999998766444444334467889999975 3344433321 1123555652
Q ss_pred C---ceeeee-cccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEcCC
Q psy16005 163 G---AKVSSL-PIDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASDAH 236 (248)
Q Consensus 163 ~---~~~~~~-~~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 236 (248)
+ ..++.+ .|...+.++.|++.+ +++++++.|+.|.+|+.++++.+..+. .....+..+.|+|... .+++++-|
T Consensus 240 R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 240 RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred cccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeeeecCCCcchhhhheec
Confidence 2 233444 356678999999966 799999999999999999999877665 3567899999999887 67778899
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
|.|.||.+...
T Consensus 319 gkI~I~sl~~~ 329 (1049)
T KOG0307|consen 319 GKISIYSLQGT 329 (1049)
T ss_pred cceeeeeeecC
Confidence 99999998653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-18 Score=129.15 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=142.5
Q ss_pred CCcEEEEEecCC-Cc--eeeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEEECCC-CceeeeeeccCCCCCeeEEEE
Q psy16005 36 NGNSVIIRNIEN-PA--ISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 36 ~~~~v~v~~~~~-~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~ 110 (248)
.++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +......... .......++|
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 389999999964 33 334443 345677899999999887664 578899999973 3321112221 2345678999
Q ss_pred ecCCCEEEEEe--CCcEEEEEccCC-------------CCCceeEeCCCCCEEEE-EcCCCeEEEEECCc--ee------
Q psy16005 111 SPDNQRMISIV--ENGAKVSSLPID-------------YEPSSISLDHEHGLVAV-GGADSKISIVENGA--KV------ 166 (248)
Q Consensus 111 ~~~~~~l~~~~--~~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~------ 166 (248)
+|+++++++++ ++.+.+|++... ..+..+.++|+++++++ ...++.|.+||... .+
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 99999999887 345678877521 23456779999988754 55679999999322 11
Q ss_pred -eeecccCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCC--CCC--CCcccc-----cCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 167 -SSLPIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNN--KSL--SPKAEL-----DHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 167 -~~~~~~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~--~~~--~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
...+....+..++|+|+|++++++++ ++.|.+|+++. ++. ...... .+......+.++|++++++++..
T Consensus 168 ~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 168 EVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred ceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 12233455788999999999988876 89999999974 222 111100 11223346889999999998854
Q ss_pred -CCeEEEEECCC
Q psy16005 236 -HRKVVLYRVPD 246 (248)
Q Consensus 236 -d~~i~vw~~~~ 246 (248)
++.|.+|+++.
T Consensus 248 ~~~~I~v~~i~~ 259 (330)
T PRK11028 248 TASLISVFSVSE 259 (330)
T ss_pred CCCeEEEEEEeC
Confidence 78999999843
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-19 Score=138.64 Aligned_cols=231 Identities=15% Similarity=0.140 Sum_probs=164.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCce--ee----eeecCCcceEEEEECcCC--cEEEEEccCCeEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAI--SD----IYTEHSCAVNVAKYSPSG--FYIASGDISGKVRIW 85 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~--~~----~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw 85 (248)
....|.|+.|+|....+++|+ +|.|.+||+..+.. .. ....|..+++.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999766555554 99999999987654 22 223788999999997743 449999999999999
Q ss_pred ECCCCceeeee---ecc-------CCCCCeeEEEEec-CCCEEEEEeCCcEEEEE----c---------------cCCCC
Q psy16005 86 DTVNKEHILKN---EFH-------PIGGPIKDIAWSP-DNQRMISIVENGAKVSS----L---------------PIDYE 135 (248)
Q Consensus 86 d~~~~~~~~~~---~~~-------~~~~~v~~~~~~~-~~~~l~~~~~~~~~i~~----~---------------~~~~~ 135 (248)
+++.-...... ... .....+++++|.+ +-..+++|++.|....- + .+...
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88643321100 000 1134678899988 45677777777754331 1 12345
Q ss_pred CceeEeCCCCCEEEEEcCCCeEEEEECC-c--eeeeecc-cCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 136 PSSISLDHEHGLVAVGGADSKISIVENG-A--KVSSLPI-DYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--~~~~~~~-~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
+..+.++|-+..++..+.|.++++|... . ++..+.. ...+.+++|||... .|+++..+|.+.+||+......+..
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 6778888887766655569999999955 2 2333332 33388999999664 7888889999999999876554433
Q ss_pred cc-cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 211 EL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 211 ~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.. -+....+.+.|+++|+.|++|...|.+.+|++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 32 2356677889999999999999999999999853
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-18 Score=122.02 Aligned_cols=223 Identities=12% Similarity=0.144 Sum_probs=164.4
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC--CeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--GKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 94 (248)
...+..+.|+.+...|..|+....++|+.+..............|-.+-|+.+ ++|..+.+ ..+++.+++.+..++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 34567778999999999998666778877654432222222334556667643 55555443 459999999888777
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-------------CCCCceeEeCCCCCEEEEE--cCCCeEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI-------------DYEPSSISLDHEHGLVAVG--GADSKISI 159 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~i~~ 159 (248)
...++ ..|.++.++ -++|+++-++.+.|++++. ......++.++.+.+++.- ...|.|.+
T Consensus 83 e~~fp---t~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 83 EIFFP---TSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEecC---CceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 66654 778888885 4678888888899999752 1122333444455677753 35689999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCcEEEEEc
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSK-VHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 234 (248)
|| .-+....+. |...+.+++|+|+|.+||++++.|+ ||+|.+.+++...++..+ ....|.+++|+|++++|++.+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 99 334444444 6778899999999999999999987 899999999988877765 345789999999999999999
Q ss_pred CCCeEEEEECCC
Q psy16005 235 AHRKVVLYRVPD 246 (248)
Q Consensus 235 ~d~~i~vw~~~~ 246 (248)
..++|++|.+++
T Consensus 238 ~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 238 NTETVHIFKLEK 249 (391)
T ss_pred CCCeEEEEEecc
Confidence 999999999865
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.1e-18 Score=119.88 Aligned_cols=222 Identities=19% Similarity=0.294 Sum_probs=157.7
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcc--eEEEEECcCCcEEE-EEccC------CeEEEEECC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA--VNVAKYSPSGFYIA-SGDIS------GKVRIWDTV 88 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~-~~~~d------g~i~iwd~~ 88 (248)
....+++|+.|...++++.+.-.+||+.+.-+.....+.+.+. +..+-| ..++|+ .|+.+ ..|.|||-.
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 3456699999999999999999999998764432222222222 222222 334554 34333 469999965
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------CCCcee-EeCCC--CCEEEE-EcCC
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------YEPSSI-SLDHE--HGLVAV-GGAD 154 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------~~~~~~-~~~~~--~~~~~~-~~~~ 154 (248)
....+....+ ..+|.++.+.+ ..+++.-++.+.+|.+..+ ..+..+ ++.|. ..+|+. |..-
T Consensus 84 k~~~i~el~f---~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELSF---NSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEEe---ccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 5555443443 58899999976 4788888999999987632 112222 22222 233443 4456
Q ss_pred CeEEEEECCc-----eeeeecccCCCceEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCCCccccc-CCcCeEEEEEcCCC
Q psy16005 155 SKISIVENGA-----KVSSLPIDYEPSSISLDHEHGLVAVGGADSK-VHIYELNNKSLSPKAELD-HLGPVTDCSFSPSN 227 (248)
Q Consensus 155 ~~i~~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~ 227 (248)
|.|++.|... ......|...+.|++.+-+|..+|+++..|+ |||||..+++.+..+..+ ....|.+++|||+.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 8899988222 2444567888999999999999999999997 899999999998887766 45789999999999
Q ss_pred cEEEEEcCCCeEEEEECCC
Q psy16005 228 EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~ 246 (248)
.+|+++|..|+++|+.++.
T Consensus 239 s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEcCCCeEEEEEeec
Confidence 9999999999999998865
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=136.94 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=138.1
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (248)
..|++||.+... .+.+..|...+.+++|||||+.|+..+.+ ..|++||+.+++......+.+ ....++|+|||
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCC
Confidence 589999987555 45566788889999999999999887654 479999998876433233333 34468999999
Q ss_pred CEEEEEe-CCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEc-CCCeEEEEE---CCceeeeecccCCCce
Q psy16005 115 QRMISIV-ENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGG-ADSKISIVE---NGAKVSSLPIDYEPSS 177 (248)
Q Consensus 115 ~~l~~~~-~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~---~~~~~~~~~~~~~~~~ 177 (248)
+.|+.+. .++ ..+|.++. ........|+|+++.++..+ .++...+|+ .+.....+.... ..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~ 337 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YS 337 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CC
Confidence 9988865 344 46665432 12345789999999776544 567777776 222233332222 45
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 178 ISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 178 ~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
..|+|||++|+..+.++ +.+||+.+++...... .+ ....+.|+|||++|++++.++...+|++
T Consensus 338 ~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 338 AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 78999999998887765 6669998876532211 22 2356789999999999988888888775
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-19 Score=124.34 Aligned_cols=203 Identities=15% Similarity=0.203 Sum_probs=149.6
Q ss_pred ccccCCcEEEEeCCCCC----EEEEeCCcEEEEEecCCC--cee--e-----eeecCCcceEEEEECc-CCcEEEEEccC
Q psy16005 14 RTQRGQPIVLGGDPKGK----NFLYTNGNSVIIRNIENP--AIS--D-----IYTEHSCAVNVAKYSP-SGFYIASGDIS 79 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~----~l~~~~~~~v~v~~~~~~--~~~--~-----~~~~~~~~v~~~~~s~-~~~~l~~~~~d 79 (248)
..|..+++.+.|.|+.. -|++.++..+++|.+... +.. . .-..+..++++..|+. +.++|.++|-|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 35778999999999874 345556678999988732 211 1 1125677899999998 78899999999
Q ss_pred CeEEEEECCCCce-eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 80 GKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 80 g~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
-+..|||++++.. ..+.++-.|...|..++|...+.. .+++.+.||.++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~------------------------------~FASvgaDGSvR 222 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD------------------------------VFASVGADGSVR 222 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc------------------------------eEEEecCCCcEE
Confidence 9999999998732 345677889999999999986542 455566777777
Q ss_pred EEECCceeee---ec--c-cCCCceEEEcCCC-CEEEEEcCC-CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC-cE
Q psy16005 159 IVENGAKVSS---LP--I-DYEPSSISLDHEH-GLVAVGGAD-SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN-EY 229 (248)
Q Consensus 159 ~~~~~~~~~~---~~--~-~~~~~~~~~s~~~-~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 229 (248)
++|.+...+. ++ . ..+...++|+++. +++|+-..| ..|.|.|++..........+|.+.|+.++|.|.. ..
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 7774333221 11 1 2334567787744 477765554 5699999998776655556899999999999975 58
Q ss_pred EEEEcCCCeEEEEECCC
Q psy16005 230 LVASDAHRKVVLYRVPD 246 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~ 246 (248)
|.+++.|..+.+||+..
T Consensus 303 ictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 303 ICTAGDDCQALIWDLQQ 319 (364)
T ss_pred eeecCCcceEEEEeccc
Confidence 89999999999999975
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=124.15 Aligned_cols=205 Identities=15% Similarity=0.239 Sum_probs=141.9
Q ss_pred ecccccccccCCcEEEEeCCCCC-EEEEeC----C----cEEEEEecCCCc---------eeeeee-cCCcceEEEEECc
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGK-NFLYTN----G----NSVIIRNIENPA---------ISDIYT-EHSCAVNVAKYSP 68 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~----~----~~v~v~~~~~~~---------~~~~~~-~~~~~v~~~~~s~ 68 (248)
+....-.++.+.|..++-+|-.+ .|+++. | ..+.||.+.... .+..+. .+-+.|.|+.|.|
T Consensus 54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P 133 (370)
T KOG1007|consen 54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP 133 (370)
T ss_pred hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence 44444456889999999999655 455442 2 257799886422 222232 3456899999999
Q ss_pred CCcEEEEEccCCeEEEEECCCCcee-eeee---ccCCCCCeeEEEEec--CCCEEEEEeCCcEEEEEccCCCCCceeEeC
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHI-LKNE---FHPIGGPIKDIAWSP--DNQRMISIVENGAKVSSLPIDYEPSSISLD 142 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~---~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 142 (248)
++..+++-. |..|.+|++..+..+ .... -.++....++-+|+| |++.+++.++
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d-------------------- 192 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD-------------------- 192 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC--------------------
Confidence 999998876 789999999877642 1111 112344566677777 5555555444
Q ss_pred CCCCEEEEEcCCCeEEEEECCce--eeee--cccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 143 HEHGLVAVGGADSKISIVENGAK--VSSL--PIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
+++..||.+.. ...+ .+...+..+.|+|+.+ +|++++.||.|+|||.+..+.......+|...
T Consensus 193 ------------~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 193 ------------STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred ------------CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 45555553221 1111 1334467888999776 78888999999999999888776667789999
Q ss_pred eEEEEEcCC-CcEEEEEcCCCeEEEEECC
Q psy16005 218 VTDCSFSPS-NEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 218 v~~~~~s~~-~~~l~~~~~d~~i~vw~~~ 245 (248)
|.++.|+|. .+++++++.|..|.+|...
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEecc
Confidence 999999996 4677899999999998753
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=129.06 Aligned_cols=189 Identities=17% Similarity=0.281 Sum_probs=142.2
Q ss_pred CCCEEEEe---C-CcEEEEEecC-CCce---eeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCcee-----
Q psy16005 28 KGKNFLYT---N-GNSVIIRNIE-NPAI---SDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI----- 93 (248)
Q Consensus 28 ~~~~l~~~---~-~~~v~v~~~~-~~~~---~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~----- 93 (248)
+.++++.. + +|...+.-+. +|+. ...+.+|+++|..++|+| +...||+||.|.+|.||++..+...
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 44566653 2 4455555443 3433 234569999999999999 6678999999999999999765432
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecc
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPI 171 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~ 171 (248)
....+.+|...|--++|+|.- .+.|++++.|..|.+|+ +++.+..+.+
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA------------------------------~NVLlsag~Dn~v~iWnv~tgeali~l~h 172 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTA------------------------------PNVLLSAGSDNTVSIWNVGTGEALITLDH 172 (472)
T ss_pred ceEEEeecceeEEEEeecccc------------------------------hhhHhhccCCceEEEEeccCCceeeecCC
Confidence 234567788888888888743 24566788889999999 6777777788
Q ss_pred cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCc-CeEEEEEcCCCcEEEEE---cCCCeEEEEECCCC
Q psy16005 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLG-PVTDCSFSPSNEYLVAS---DAHRKVVLYRVPDF 247 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~---~~d~~i~vw~~~~~ 247 (248)
+.-+.++.|+.||.+|++++.|..|+|||.++++.+.... +|.+ .-..+.|-.+|..+-+| .++..+-+||-.+.
T Consensus 173 pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 173 PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence 8889999999999999999999999999999999876653 5543 34566788899855444 34788999987664
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-17 Score=126.68 Aligned_cols=231 Identities=20% Similarity=0.333 Sum_probs=178.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc-eeeeeecCC-cceEEEEE-CcCCc-EEEEEcc-CCeEEEEEC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA-ISDIYTEHS-CAVNVAKY-SPSGF-YIASGDI-SGKVRIWDT 87 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-~~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~i~iwd~ 87 (248)
..+...+.++.+.+.+..++.++ ++.+.+|+...+. ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|+.
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 46788999999999999999887 9999999998876 566665543 36777777 88777 5555444 899999999
Q ss_pred CC-CceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-C-cEEEEEccC----------CCCCceeEeCCCCC-EEEEEcC
Q psy16005 88 VN-KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-N-GAKVSSLPI----------DYEPSSISLDHEHG-LVAVGGA 153 (248)
Q Consensus 88 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~-~~~i~~~~~----------~~~~~~~~~~~~~~-~~~~~~~ 153 (248)
.. .. ....+..|...+..++|+|+++.++.++. + .+++|+... ...+..+++.|++. .+++++.
T Consensus 142 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 142 STPGK--LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred cCCCe--EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 87 44 33567788899999999999998888873 4 468998753 35678889999988 5555599
Q ss_pred CCeEEEEEC--Cceee-eecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-CCcccccCCcCeEEEEEcCCCcE
Q psy16005 154 DSKISIVEN--GAKVS-SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-SPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 154 ~~~i~~~~~--~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
|+.+.+||. +.... .+..+.......|+|++..+++++.|+.+++|+.+.... .... ..|...+.++.|+|++..
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCE
Confidence 999999983 34444 233332222227999998899999999999999987665 2233 468899999999999888
Q ss_pred EEEEcCCCeEEEEECCCC
Q psy16005 230 LVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~~ 247 (248)
+++++.|+.+.+|+..+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 299 LASGSSDGTVRLWDLETG 316 (466)
T ss_pred EEEeeCCCcEEEEEcCCC
Confidence 888888888999988764
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=131.66 Aligned_cols=189 Identities=20% Similarity=0.305 Sum_probs=147.0
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC--EEEEEeCCcEE---
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ--RMISIVENGAK--- 126 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~~--- 126 (248)
..+.+|++.|.++...|.|.+|++|+.||+|+||.+.++.++....+. +.|.+++|+|.+. .|+++..+...
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 356799999999999999999999999999999999999988666654 6899999999764 34444333221
Q ss_pred ------------------------------EEE--------------ccCCCCCceeEeCCCCCEEEEEcCC---CeEEE
Q psy16005 127 ------------------------------VSS--------------LPIDYEPSSISLDHEHGLVAVGGAD---SKISI 159 (248)
Q Consensus 127 ------------------------------i~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~ 159 (248)
.|. +.+...++.+.|+..|.+|++...+ ..+.+
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 122 1234567788999999999987654 45777
Q ss_pred EECCceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 160 VENGAKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 160 ~~~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
.+..+.....+ ....+.++.|+|...+|++++. ..|+|||+..+..+..+. .....|..++.+|.|.-|+.++.|
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeeeecCCCCeEEEecCC
Confidence 77333322222 3566899999999999999885 569999999877766655 455689999999999999999999
Q ss_pred CeEEEEECC
Q psy16005 237 RKVVLYRVP 245 (248)
Q Consensus 237 ~~i~vw~~~ 245 (248)
+.+..+|++
T Consensus 629 ~k~~WfDld 637 (733)
T KOG0650|consen 629 KKMCWFDLD 637 (733)
T ss_pred CeeEEEEcc
Confidence 999999985
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-17 Score=130.30 Aligned_cols=203 Identities=13% Similarity=0.227 Sum_probs=140.0
Q ss_pred cCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEE-ccCC--eEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISG--KVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~iwd~~~ 89 (248)
...+.+.+|||||+.|++.+ +..+++|++.+++... +....+.+..+.|+|||+.|+.. +.+| .|.+||+.+
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 35688999999999998753 4589999998876443 22334445678999999988754 4454 588999988
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEccCC-----------CCCceeEeCCCCCEEEEEcCC--
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLPID-----------YEPSSISLDHEHGLVAVGGAD-- 154 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-- 154 (248)
++.. .+..+...+....|+|||+.|+..++.+ ..+|.++.. .......|+|+|+.++..+.+
T Consensus 277 g~~~---~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 277 GQIR---QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred CCEE---EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCC
Confidence 7642 3333445678899999999998877543 366654322 123457889999988876543
Q ss_pred -CeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCCc---EEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 155 -SKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSK---VHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 155 -~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~---v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
..|.+|| .+.....+..........|+|||+.|+.++.++. +.++++..... ..+. .|.+.+...+|+|
T Consensus 354 ~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l~-~~~~~~~~p~Wsp 427 (429)
T PRK03629 354 QQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLP-ATDGQVKFPAWSP 427 (429)
T ss_pred CceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EECc-cCCCCcCCcccCC
Confidence 3577788 2333344443333456889999999999887764 67777754433 3333 5777889999998
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=128.36 Aligned_cols=193 Identities=17% Similarity=0.313 Sum_probs=142.8
Q ss_pred ccccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCC
Q psy16005 14 RTQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.+|...|.+++|+.+-+ .||+|+ |.+|++||+.++++...+..|...|.++.|+| ....|++|+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 46888899999998765 566666 99999999999999999999999999999999 5789999999999999999853
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCcE-EEEEcc-----------CCCCCceeEeCCCC-CEEEEEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENGA-KVSSLP-----------IDYEPSSISLDHEH-GLVAVGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~-~i~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~ 156 (248)
... ...+. ..+.|..++|.|... .++++.++|. +-++++ +...+.++++++.. .++++++.++.
T Consensus 320 ~~s-~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 320 SNS-GKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ccc-CceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 221 11221 247899999999654 4555556664 444443 34567788887654 47888999999
Q ss_pred EEEEEC----Cceee--eecccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 157 ISIVEN----GAKVS--SLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 157 i~~~~~----~~~~~--~~~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
+++|+. .+.+. .+... ...|+++.|+-. +++.|+..+.+++||+.+...+.+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EEEEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 999982 21111 11111 146677777655 778888888999999988766443
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-18 Score=124.63 Aligned_cols=232 Identities=17% Similarity=0.236 Sum_probs=160.7
Q ss_pred ccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCCCc---------eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 16 QRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIENPA---------ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
...++.++.|.+++. .+++|+ |..|++|-+..++ ....+..|...|+++.|+|+|+.||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 456899999999877 888886 9999999876432 23456689999999999999999999999999999
Q ss_pred EECC--------C------CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------CCCCCcee
Q psy16005 85 WDTV--------N------KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP----------IDYEPSSI 139 (248)
Q Consensus 85 wd~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~----------~~~~~~~~ 139 (248)
|... + ...+....+.+|...++.++|+|+++++++++-+. .++|++. +..-+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9766 2 12344566778999999999999999999998555 5999975 34557889
Q ss_pred EeCCCCCEEEEEcCCCeEEEEEC--Cc---eee--e---------------ecccC----CCceEEEcCCCCEEEEEcC-
Q psy16005 140 SLDHEHGLVAVGGADSKISIVEN--GA---KVS--S---------------LPIDY----EPSSISLDHEHGLVAVGGA- 192 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~--~~---~~~--~---------------~~~~~----~~~~~~~s~~~~~l~~~~~- 192 (248)
+|.|-++++++-+.|...+.+.. .+ ... . +-+.. -...++|+|+|.++++...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 99999999998888875555431 11 000 0 11111 1245789999999987642
Q ss_pred ---C-----CcEEEEEcCCCCCCCcccccCCcCeEEEEEcC-----------------CCcEEEEEcCCCeEEEEECCCC
Q psy16005 193 ---D-----SKVHIYELNNKSLSPKAELDHLGPVTDCSFSP-----------------SNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 193 ---d-----~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~-----------------~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
. +..++|+-...+...........+...+.|+| -.+.+++....+.+++||.++.
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~ 331 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL 331 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc
Confidence 2 23456655433332222223344556666665 1123333344568999998764
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=122.81 Aligned_cols=230 Identities=16% Similarity=0.167 Sum_probs=165.2
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC------Cceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN------PAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
..|.+-|.++.||.++++|++|+ |..+++|+++. .+++.... .|...|.|++|....+++++|..+++|...
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 46899999999999999999998 78999999864 34444332 456889999999999999999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCC-------------CCceeEeCCCC-CEEEE
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDY-------------EPSSISLDHEH-GLVAV 150 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~-------------~~~~~~~~~~~-~~~~~ 150 (248)
|+++.+.+....-....+.|+.+..+|..+.|++.++++. .+|+.+... .-..+.|+|.. .++++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 9999987644444444569999999999888988888775 889876432 22344566654 46667
Q ss_pred EcCCCeEEEEECCcee-------------------------------e-------------------eecccC-------
Q psy16005 151 GGADSKISIVENGAKV-------------------------------S-------------------SLPIDY------- 173 (248)
Q Consensus 151 ~~~~~~i~~~~~~~~~-------------------------------~-------------------~~~~~~------- 173 (248)
.+..+-+-+||...+. . .++...
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N 292 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCN 292 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCccee
Confidence 7777777777622110 0 000000
Q ss_pred --CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----------------------CCcccccCCcCeEEEEEcCCCcE
Q psy16005 174 --EPSSISLDHEHGLVAVGGADSKVHIYELNNKSL----------------------SPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 174 --~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~----------------------~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.+.+++|--| .-+++|+.+-.|++|.+..... ....+.+|...+..+.|+|...+
T Consensus 293 ~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 293 IKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred eeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence 0122333322 3478888888899998753210 01123479999999999999999
Q ss_pred EEEEcCCCeEEEEEC
Q psy16005 230 LVASDAHRKVVLYRV 244 (248)
Q Consensus 230 l~~~~~d~~i~vw~~ 244 (248)
|++.+-.+.+++|.-
T Consensus 372 l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 372 LVSSGVENSFKLWSD 386 (609)
T ss_pred Eeccchhhheecccc
Confidence 999999999999953
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-17 Score=128.29 Aligned_cols=197 Identities=10% Similarity=0.113 Sum_probs=132.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCe--EEEEECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGK--VRIWDTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~ 88 (248)
+.+.+.+.+|+|||+.|++.+ +..|++||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 556789999999999998864 468999999887654 3455667788999999998775 5555554 7777888
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceee
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVS 167 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~ 167 (248)
+++. ..+..+........|+|||+.++..++.. ....|+++| .+....
T Consensus 279 ~~~~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----------------------------g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 279 SGTT---TRLTDSPAIDTSPSYSPDGSQIVFESDRS----------------------------GSPQLYVMNADGSNPR 327 (435)
T ss_pred CCce---EEccCCCCccCceeEcCCCCEEEEEECCC----------------------------CCCeEEEEECCCCCeE
Confidence 7763 23444555667789999999888765321 012344444 222222
Q ss_pred eec-ccCCCceEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC------C
Q psy16005 168 SLP-IDYEPSSISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH------R 237 (248)
Q Consensus 168 ~~~-~~~~~~~~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~ 237 (248)
.+. .........|+|||+.|+....+ ..|.+||+.++.. ..+. ....+..+.|+|||+.|+..+.+ .
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 222 23335568899999998876543 3588888865543 2222 22346788999999988775432 2
Q ss_pred eEEEEECCCC
Q psy16005 238 KVVLYRVPDF 247 (248)
Q Consensus 238 ~i~vw~~~~~ 247 (248)
.+.++++..+
T Consensus 405 ~L~~~dl~g~ 414 (435)
T PRK05137 405 KLYTVDLTGR 414 (435)
T ss_pred eEEEEECCCC
Confidence 5777787653
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=140.79 Aligned_cols=226 Identities=17% Similarity=0.233 Sum_probs=170.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.|+.|...|.++++|+ |..++||..+++.+.....+|.+.|+.++.+.+..+++++|.|..|++|.+..+..
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 35889999999999999999998 78999999999999999999999999999999989999999999999999999985
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCC--------------CceeEeCCCCCEEEEEcCCCe-
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYE--------------PSSISLDHEHGLVAVGGADSK- 156 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~- 156 (248)
+ ..+.+|++.|++++|+|-- +.+++| +++|+.+.... +.++.+...+..+++++.++.
T Consensus 267 v--svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 267 V--SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred H--HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 5 6788999999999999954 445555 59999762211 112222233333444444333
Q ss_pred ------------------------------------EEEEE--CCceeeeec-ccCCCceEEEcCCC-CEEEEEcCCCcE
Q psy16005 157 ------------------------------------ISIVE--NGAKVSSLP-IDYEPSSISLDHEH-GLVAVGGADSKV 196 (248)
Q Consensus 157 ------------------------------------i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~-~~l~~~~~d~~v 196 (248)
+.+|+ .+...+.+. +...+..+.++|-. +....++.||..
T Consensus 341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 33344 233333222 23334567778844 456678899999
Q ss_pred EEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 197 HIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.|||+-.+..+.....+| ..+...+||+||..++....-|.++|.....
T Consensus 421 ~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred EeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 999999988877776665 4567779999999999888888888876543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=116.20 Aligned_cols=150 Identities=21% Similarity=0.430 Sum_probs=103.5
Q ss_pred EEEEECcCCcEEEEEcc----------CCeEEEEECCCCce-eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc
Q psy16005 62 NVAKYSPSGFYIASGDI----------SGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL 130 (248)
Q Consensus 62 ~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~ 130 (248)
..+.|+|+|++|+.-.. -|...+|.++..+. .....+. ..++|.+++|+|+|+.+++..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~--------- 78 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIY--------- 78 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEE---------
Confidence 45789999987765322 23456666543322 2222222 245699999999888776532
Q ss_pred cCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcC---CCcEEEEEcCCCCC
Q psy16005 131 PIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGA---DSKVHIYELNNKSL 206 (248)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---d~~v~i~d~~~~~~ 206 (248)
|..+..+.+|| .++.+..+. ....+.+.|+|+|++|++++. .|.|.+||.++.+.
T Consensus 79 --------------------g~~~~~v~lyd~~~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 79 --------------------GSMPAKVTLYDVKGKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred --------------------ccCCcccEEEcCcccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 34455777777 444444443 445688999999999999864 46799999997777
Q ss_pred CCcccccCCcCeEEEEEcCCCcEEEEEcC------CCeEEEEECC
Q psy16005 207 SPKAELDHLGPVTDCSFSPSNEYLVASDA------HRKVVLYRVP 245 (248)
Q Consensus 207 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~ 245 (248)
+... .|. .++.++|+|||++++++.. |+.++||++.
T Consensus 138 i~~~--~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTF--EHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eecc--ccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 5444 343 4789999999999998853 7899999974
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=121.92 Aligned_cols=240 Identities=15% Similarity=0.199 Sum_probs=148.7
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRI 84 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i 84 (248)
+++..++... .....+.++|||+++++++ |+.|.++|+.+.+.+.+++... ...++++|+||++++++. ..+.+.+
T Consensus 27 ~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 27 KVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred eEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeE
Confidence 4555565432 2234578999999988876 9999999999999999886544 467899999999998775 5799999
Q ss_pred EECCCCceeeeeeccC-----CCCCeeEEEEecCCCEEEEEeCCcEEEEEcc-------------CCCCCceeEeCCCCC
Q psy16005 85 WDTVNKEHILKNEFHP-----IGGPIKDIAWSPDNQRMISIVENGAKVSSLP-------------IDYEPSSISLDHEHG 146 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~~~ 146 (248)
+|.++.+.+....... ....+.++..+|....++..-.+.-++|-++ ....+....++|+++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 9999988654333221 2346778888888887777776655666543 223345677899998
Q ss_pred EEEEE-cCCCeEEEEEC--Ccee-------------------------------------------------------ee
Q psy16005 147 LVAVG-GADSKISIVEN--GAKV-------------------------------------------------------SS 168 (248)
Q Consensus 147 ~~~~~-~~~~~i~~~~~--~~~~-------------------------------------------------------~~ 168 (248)
+++++ ..+..+-++|. ++.+ +.
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 87654 44455555551 1111 11
Q ss_pred ecccCCCceEEEcCCCCEEEEE----cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC--CCeEEEE
Q psy16005 169 LPIDYEPSSISLDHEHGLVAVG----GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA--HRKVVLY 242 (248)
Q Consensus 169 ~~~~~~~~~~~~s~~~~~l~~~----~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw 242 (248)
++......-+..+|+++++.+. ...++|.++|.++.+....+..+....+..+.|++||+++..+.. ++.|.+|
T Consensus 265 I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 265 IPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp EE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred EECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 1111112235678999999988 445789999999987655554333345899999999998766543 3479999
Q ss_pred ECCCCC
Q psy16005 243 RVPDFE 248 (248)
Q Consensus 243 ~~~~~~ 248 (248)
|..|+|
T Consensus 345 D~~Tl~ 350 (369)
T PF02239_consen 345 DAKTLK 350 (369)
T ss_dssp ETTTTE
T ss_pred ECCCcE
Confidence 998874
|
... |
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=125.90 Aligned_cols=206 Identities=13% Similarity=0.195 Sum_probs=140.7
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCcee----eeeecCCcceEEEEEC-----cCCcEEEEEccCCeEEEEECCC
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS----DIYTEHSCAVNVAKYS-----PSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~----~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.+.....+-.|.+|+..-...+++|+...+... ....-......|-+|+ |.+--++.|-.-|.|.+.|...
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 344566666788898888889999988743211 1111112223444552 3566678888889999998765
Q ss_pred Cceeeeee--ccCCCCCeeEEEEecCCCEEE--EEeCCcEEEEEcc----------------------------------
Q psy16005 90 KEHILKNE--FHPIGGPIKDIAWSPDNQRMI--SIVENGAKVSSLP---------------------------------- 131 (248)
Q Consensus 90 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~--~~~~~~~~i~~~~---------------------------------- 131 (248)
.+....+. ..-.+..++++.|-|.+..++ +-......+++..
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~ 284 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA 284 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence 33211111 111246899999998544333 3233334444321
Q ss_pred ----CCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 132 ----IDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 132 ----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
....+..++|+|||++||+.++||.++++| ..+.+..+. .-....|++|||||++|++|++|.-|.||.+..+
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 123567889999999999999999999998 333333333 2345789999999999999999999999999999
Q ss_pred CCCCcccccCCcCeEEEEEcC
Q psy16005 205 SLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~s~ 225 (248)
+.+..-. +|...|..|+|.|
T Consensus 365 RVVARGq-GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 RVVARGQ-GHKSWVSVVAFDP 384 (636)
T ss_pred eEEEecc-ccccceeeEeecc
Confidence 9877666 8999999999983
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-16 Score=126.87 Aligned_cols=231 Identities=16% Similarity=0.252 Sum_probs=158.6
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC----CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
....|.-.++|.++||++++++++. ||.|.+|.--. ....+.+.-|...|.+++|+++|.+|++|+.+|.+.+|.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 3445777789999999999999997 99999996322 123456778899999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEc---cC------------------CCCCceeEeCCC
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSL---PI------------------DYEPSSISLDHE 144 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~---~~------------------~~~~~~~~~~~~ 144 (248)
+.+++. .-++.-.++|..+.++||+.+.+....| .+.+-.. .. ..-.+.++++|.
T Consensus 280 ~~T~~k---qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 280 LETGKK---QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred ecCCCc---ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 999873 4556667999999999999887766554 4444332 10 111234556665
Q ss_pred CCEEEEEcCCCeEEEEE--CCceeeee-----------------------------------------------------
Q psy16005 145 HGLVAVGGADSKISIVE--NGAKVSSL----------------------------------------------------- 169 (248)
Q Consensus 145 ~~~~~~~~~~~~i~~~~--~~~~~~~~----------------------------------------------------- 169 (248)
.+.++..+..+.|++|| +.+.+..+
T Consensus 357 ~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 357 TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 55666666666666665 11111000
Q ss_pred ----------------cccCCCceEE-EcCCCC-EEEEEcCCCcEEEEEcCCCCCCCc---------ccccCCcCeEEEE
Q psy16005 170 ----------------PIDYEPSSIS-LDHEHG-LVAVGGADSKVHIYELNNKSLSPK---------AELDHLGPVTDCS 222 (248)
Q Consensus 170 ----------------~~~~~~~~~~-~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~---------~~~~~~~~v~~~~ 222 (248)
+|.......+ .+|... ..++++.||.++||-+...+.... ...-|..++++++
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 1111111122 223223 788899999999999854332211 1112678899999
Q ss_pred EcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 223 FSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 223 ~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
|+.||.. ++.+.|++|.+||..+
T Consensus 517 fs~dGsl-la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 517 FSQDGSL-LAVSFDDTITIWDYDT 539 (792)
T ss_pred hcCCCcE-EEEecCCEEEEecCCC
Confidence 9999964 4555788999999876
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=117.89 Aligned_cols=192 Identities=18% Similarity=0.250 Sum_probs=154.1
Q ss_pred eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc-eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEc-
Q psy16005 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSL- 130 (248)
Q Consensus 54 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~- 130 (248)
+.....+|+|.+|++|+..+|.+-....|.||.....+ ......+..|...|+.+.|+|..+.|++++.|. ..+|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33456799999999999999999999999999998877 556678889999999999999999999998665 477775
Q ss_pred ------------cCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCcee------eeecccCCCceEEEcCCCCEEEEEc
Q psy16005 131 ------------PIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKV------SSLPIDYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 131 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~------~~~~~~~~~~~~~~s~~~~~l~~~~ 191 (248)
+.+...+++.|+|.++.+++|+....|.++- .++.. ...++...+.++.|+|++-+|++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3566788999999999999999999988865 33222 2334566789999999999999999
Q ss_pred CCCcEEEEEcCCCC------------------CCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 192 ADSKVHIYELNNKS------------------LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 192 ~d~~v~i~d~~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.|+..++|..--.. +..+.. ...+.+..+.|+|+|..|+-.+.|..+.+=|...
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 99999999752111 111111 3467899999999999999999999998877543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-18 Score=128.26 Aligned_cols=118 Identities=15% Similarity=0.198 Sum_probs=90.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee-ecCCcceEEEEECc--CCcEEEEEccCCeEEEEECCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.+|.|-|+|+.|+.+|.+|++|+ |-.+.|||.-..++...+ .+|...|.++.|-| +.+++++|..|..|+++|+..
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 46999999999999999999998 779999998877776655 48999999999999 567899999999999999974
Q ss_pred Cc--------eeeeeeccCCCCCeeEEEEecCC-CEEEEEeCCcE-EEEEcc
Q psy16005 90 KE--------HILKNEFHPIGGPIKDIAWSPDN-QRMISIVENGA-KVSSLP 131 (248)
Q Consensus 90 ~~--------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~-~i~~~~ 131 (248)
.+ ......+..|...|..++-.|++ +.+.++++||. +-++++
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 22 11223445667777777777766 45555555553 445543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-15 Score=120.18 Aligned_cols=228 Identities=23% Similarity=0.389 Sum_probs=170.7
Q ss_pred CCcEEEEe-CCCCC-EEEEe-C-CcEEEEEecCC-CceeeeeecCCcceEEEEECcCCcEEEEEcc-CCeEEEEECCCCc
Q psy16005 18 GQPIVLGG-DPKGK-NFLYT-N-GNSVIIRNIEN-PAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKE 91 (248)
Q Consensus 18 ~~v~~~~~-s~~~~-~l~~~-~-~~~v~v~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~ 91 (248)
..+..+.+ ++++. .++.. . ++.+.+|+... ......+..|...|..+.|+|+++.+++++. ++.+++|++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc
Confidence 35666666 88888 44443 3 88999999987 7777888899999999999999998888885 9999999999865
Q ss_pred eeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCCCC--------Cce-e-EeCCCCCEEEEEcCCCeEEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPIDYE--------PSS-I-SLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~~~--------~~~-~-~~~~~~~~~~~~~~~~~i~~ 159 (248)
.. ..+..|...+.+++|+|++. .+++++.++ +.+|+...... ... + .+++++..+++++.++.+++
T Consensus 190 ~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 267 (466)
T COG2319 190 PL--STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRL 267 (466)
T ss_pred eE--EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEE
Confidence 43 45566899999999999998 455535444 57886542111 111 2 68899888889999999999
Q ss_pred EECC--ce-eeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-ccCCcCeEEEEEcCCCcEEEEE-
Q psy16005 160 VENG--AK-VSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-LDHLGPVTDCSFSPSNEYLVAS- 233 (248)
Q Consensus 160 ~~~~--~~-~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~- 233 (248)
|+.. .. ...+ .+...+.++.++|++..+++++.|+.+.+||..+........ ..|...+..+.|.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred eeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 9933 21 2232 345678889999988888888888889999888776544433 3577779999994343556555
Q ss_pred cCCCeEEEEECCCC
Q psy16005 234 DAHRKVVLYRVPDF 247 (248)
Q Consensus 234 ~~d~~i~vw~~~~~ 247 (248)
..|+.+.+|++...
T Consensus 348 ~~d~~~~~~~~~~~ 361 (466)
T COG2319 348 SDDGTIRLWDLRTG 361 (466)
T ss_pred cCCCcEEeeecCCC
Confidence 67889999998764
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=132.43 Aligned_cols=186 Identities=19% Similarity=0.305 Sum_probs=141.9
Q ss_pred CCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCC-------ceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEEC
Q psy16005 18 GQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENP-------AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 18 ~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~-------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 87 (248)
..|+.+.|.| |...|+++. ||.|++|.+..+ .....+..|...|+++.|+| -.+.|+++++|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 5688999999 566777765 999999998753 34556789999999999999 4578999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC------------CCCceeEeCCCCCEEEEEcCC
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID------------YEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.++.. ...+.+|.+.|..++|+|||+.+++.+.|+. ++|+-+.. .+-..+.|..+|+++++.+.|
T Consensus 708 ~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhh--hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 98874 3678899999999999999999999998874 88876432 334578899999988887665
Q ss_pred C----eEEEEEC----CceeeeecccCC--CceEEEcCCCC-EEEEEcCCCcEEEEEcCCCC
Q psy16005 155 S----KISIVEN----GAKVSSLPIDYE--PSSISLDHEHG-LVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 155 ~----~i~~~~~----~~~~~~~~~~~~--~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~ 205 (248)
+ .|.+||. +..+....++.. +.--.+++|.. ++++|-.|..|++|.+-...
T Consensus 786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 4 5777872 233333333322 22334566665 66777789999999986544
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-17 Score=116.76 Aligned_cols=176 Identities=16% Similarity=0.215 Sum_probs=130.5
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceeeeeeccC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHP 100 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (248)
-.+|||+|+++|+.++-.+.|-|.++.+..+.+.. -+.|..+.|..|..+++ ....++.|.+|++...+.. -.+..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~--ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY--CKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeE--EEecc
Confidence 36899999999999988999999988877765543 46688899999876665 4577889999999988854 45556
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCc--EEEEEccCC---------CCCceeEeCCCCCEEEEEcCC---------------
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVENG--AKVSSLPID---------YEPSSISLDHEHGLVAVGGAD--------------- 154 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--------------- 154 (248)
...++..+.|+|||+.++..++-. +.+|.+... ..+..++|+|+|++.+..+.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 678999999999999888887654 578887532 335677788888776655321
Q ss_pred ---------------------CeEEEEECC--ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 155 ---------------------SKISIVENG--AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 155 ---------------------~~i~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
..+.+||+- -.+..+.....+..++|+|.+++|++|+.|+.+++.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 123445522 1222333445677899999999999999999888764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-16 Score=125.57 Aligned_cols=205 Identities=14% Similarity=0.171 Sum_probs=137.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEE--CC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWD--TV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd--~~ 88 (248)
+...+.+.+|+|||+.|++.+ ...|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||. +.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 456788999999999998875 2469999999887644 334445667899999998886 567788766665 44
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC--cEEEEEccCCC-----------CCceeEeCCCCCEEEEEcCCC
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN--GAKVSSLPIDY-----------EPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 155 (248)
++.. ..+..+........|+|||+.|+..++. ...+|.++... ......|+|+|+.++..+.++
T Consensus 273 ~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 273 GSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred CCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 4432 2344444556678999999998877653 34677654321 123467999999988766554
Q ss_pred ---eEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 156 ---KISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 156 ---~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
.|.+|| .......+..........|+|||+.|+.++.++ .+++.++. ++...... .+.+.+...+|+|-
T Consensus 350 g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 350 GAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred CcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEee-cCCCCCCCCccCCC
Confidence 588898 222333333333346789999999888876543 36666664 33332232 35567788899874
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-16 Score=124.72 Aligned_cols=196 Identities=13% Similarity=0.209 Sum_probs=128.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCC--eEEEEECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISG--KVRIWDTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg--~i~iwd~~ 88 (248)
+...+.+.+|+|||+.|++.+ ...|++||+.+++... +....+...+++|+|||+.|+ +.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 345678899999999999875 3479999998876543 334455566889999998775 445555 59999998
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cceee
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN-GAKVS 167 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~ 167 (248)
+++.. .+..+.......+|+|||+.|+..++..- ...|+.++. +....
T Consensus 281 ~g~~~---~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------------------------~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 281 SRQLT---RLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------------------------RPQIYRVAASGGSAE 329 (433)
T ss_pred CCCeE---ECccCCCCccceEECCCCCEEEEEECCCC----------------------------CceEEEEECCCCCeE
Confidence 87642 34444455567899999998887764210 012333331 11111
Q ss_pred eec-ccCCCceEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC---CeEE
Q psy16005 168 SLP-IDYEPSSISLDHEHGLVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH---RKVV 240 (248)
Q Consensus 168 ~~~-~~~~~~~~~~s~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~ 240 (248)
.+. .......++|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~ 406 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLA 406 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 121 112234689999999988765433 6999999887653 222 22234567999999988776543 4677
Q ss_pred EEECCC
Q psy16005 241 LYRVPD 246 (248)
Q Consensus 241 vw~~~~ 246 (248)
++++..
T Consensus 407 ~~~~~g 412 (433)
T PRK04922 407 AVSTDG 412 (433)
T ss_pred EEECCC
Confidence 777743
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-17 Score=113.73 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=135.3
Q ss_pred cccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCce---eeeeecCCcceEEEEECcCC-cEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPAI---SDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~ 88 (248)
.+..++++..|+.-. +++.+++ |.+..|||++++.. ..++-.|..+|..++|...+ +.+|+.+.||.|++||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 456789999999844 5666666 99999999998633 45566999999999999854 678999999999999998
Q ss_pred CCcee-eeeeccCCCCCeeEEEEecCC-CEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC---C
Q psy16005 89 NKEHI-LKNEFHPIGGPIKDIAWSPDN-QRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN---G 163 (248)
Q Consensus 89 ~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~ 163 (248)
..+.- ..++-+....+...++|+++. +++++-..+ ...|.+.|. .
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d------------------------------S~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD------------------------------SNKVVILDIRVPC 277 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC------------------------------CceEEEEEecCCC
Confidence 76531 112222224677788888743 444443322 234555552 2
Q ss_pred ceeeeec-ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCC----CCcccccCCcCeEEEEEcCCC-cEEEEEcCC
Q psy16005 164 AKVSSLP-IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSL----SPKAELDHLGPVTDCSFSPSN-EYLVASDAH 236 (248)
Q Consensus 164 ~~~~~~~-~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d 236 (248)
..+..+. |...++.++|.|.. ..|++++.|.++.+||+..--. -+.+...-.+.|+.+.|++.. ..++.+ .+
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~-~~ 356 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC-FG 356 (364)
T ss_pred cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEE-ec
Confidence 2333333 66779999999954 5999999999999999975322 111111246779999999754 456555 44
Q ss_pred CeEEEE
Q psy16005 237 RKVVLY 242 (248)
Q Consensus 237 ~~i~vw 242 (248)
+++.+.
T Consensus 357 kkleiL 362 (364)
T KOG0290|consen 357 KKLEIL 362 (364)
T ss_pred CeeeEE
Confidence 555554
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-17 Score=116.44 Aligned_cols=235 Identities=15% Similarity=0.211 Sum_probs=165.7
Q ss_pred cccccccccCCcEEEEeCC-----CCCEEEEeCCcEEEEEecCCCceeeeee-----cCCcceEEEEECcC----CcEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDP-----KGKNFLYTNGNSVIIRNIENPAISDIYT-----EHSCAVNVAKYSPS----GFYIA 74 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~~~v~v~~~~~~~~~~~~~-----~~~~~v~~~~~s~~----~~~l~ 74 (248)
.+.+...|..+|..++|++ .-..+++++.+.+.+|......-++.++ .|.+....++|+-+ ..++|
T Consensus 30 t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la 109 (385)
T KOG1034|consen 30 TNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA 109 (385)
T ss_pred eeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence 3456667888999999985 2345666678889999876433222222 46677888888753 35788
Q ss_pred EEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEccC-------------CCCCcee
Q psy16005 75 SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLPI-------------DYEPSSI 139 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~~-------------~~~~~~~ 139 (248)
.|+.-|.|+|.|+.+++.. ..+.+|...|..+.+.|+. +++++++.|. +++|+++. ...+.++
T Consensus 110 ~~G~~GvIrVid~~~~~~~--~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCS--KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred eecceeEEEEEecchhhhc--cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence 8899999999999998843 6778999999999999965 6778888776 59999864 4567899
Q ss_pred EeCCCCCEEEEEcCCCeEEEEECCce--eeeec-----------------------------ccCCCceEEEcCCCCEEE
Q psy16005 140 SLDHEHGLVAVGGADSKISIVENGAK--VSSLP-----------------------------IDYEPSSISLDHEHGLVA 188 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~-----------------------------~~~~~~~~~~s~~~~~l~ 188 (248)
.|++++.++++++.|..+++|+...+ ...++ |...+.|+.|- |.+++
T Consensus 188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~il 265 (385)
T KOG1034|consen 188 DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFIL 265 (385)
T ss_pred EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhee
Confidence 99999999999999999999984311 00000 01112233332 56788
Q ss_pred EEcCCCcEEEEEcC-CCCCCCcc--------ccc----CCcCeEEE--EEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 189 VGGADSKVHIYELN-NKSLSPKA--------ELD----HLGPVTDC--SFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 189 ~~~~d~~v~i~d~~-~~~~~~~~--------~~~----~~~~v~~~--~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+-+-++.|..|... -++..... ..+ ....|.-+ +|.|-++.||.|...|++.+||++.-
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 88888899999872 22111100 001 12344444 45667899999999999999999764
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-19 Score=130.77 Aligned_cols=184 Identities=17% Similarity=0.276 Sum_probs=154.8
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe--------CCcEEEEEcc
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV--------ENGAKVSSLP 131 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~~~~i~~~~ 131 (248)
.-..+.++.+|+.|+.|+..|.|..+|..++.......+ ...|.++.|-.+.++++++- .+|+.+.-+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh
Confidence 456788999999999999999999999999986644443 36688888887776666654 4455555567
Q ss_pred CCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeeccc-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC
Q psy16005 132 IDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPID-YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP 208 (248)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~ 208 (248)
....+..+.|-|..-+|++++..|.+...| .|+.+..+... .....++-+|-...+-+|..+|+|.+|.....+.+.
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv 287 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV 287 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence 778899999999999999999999999988 77777776643 445677888988899999999999999999988877
Q ss_pred cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 209 KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 209 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.+. .|.++|.++++.++|+|++|++.|..++|||+++.
T Consensus 288 KiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 288 KIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF 325 (545)
T ss_pred HHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccc
Confidence 666 79999999999999999999999999999999875
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-16 Score=113.63 Aligned_cols=223 Identities=13% Similarity=0.212 Sum_probs=164.5
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcE-EEEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY-IASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..|.-+.|..|..+++++. ++.|.+|++...+-...+.....++.+++|||||+. |.+..-+-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~- 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY- 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-
Confidence 4567788999999888875 889999999998888888888889999999999955 456677889999999887643
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-------------------------------------EEEEEcc------
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-------------------------------------AKVSSLP------ 131 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-------------------------------------~~i~~~~------ 131 (248)
.++-.+..+..++|+|||++.+.+++.. +.+|+-.
T Consensus 128 --~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 128 --LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred --EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 2333345668889999999888776421 1234322
Q ss_pred ---CCCCCceeEeCCCCCEEEEEcCCCeEEEEE------CCce-------------------------------------
Q psy16005 132 ---IDYEPSSISLDHEHGLVAVGGADSKISIVE------NGAK------------------------------------- 165 (248)
Q Consensus 132 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~------------------------------------- 165 (248)
.+..+..++|+|-++.+++|+.|+.+++.+ .++-
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 234466788999999999999999888743 0000
Q ss_pred -------------------eeeec--c-----cCCCceEEEcCCCCEEEEEcCC--CcEEEEEcCCCCCCCcccccCCcC
Q psy16005 166 -------------------VSSLP--I-----DYEPSSISLDHEHGLVAVGGAD--SKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 166 -------------------~~~~~--~-----~~~~~~~~~s~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
++.++ . ...+.-++|++|..++++-... +.+.+||++..+....+. ...+
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~p 363 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHP 363 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh--hccc
Confidence 00000 0 0112357999999998887643 569999999888755554 4557
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|....|.|....|+.+.....+++|...
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 9999999999989888777789999754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-15 Score=118.91 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=133.8
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc---cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD---ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (248)
.|.++|.+..... .+..+...+.+.+|||||+.|+..+ .+..+.+|++.+++......+. .....++|+|||+
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEECCCCC
Confidence 7889998755443 3445677899999999999988654 2457999999887643323333 3455689999999
Q ss_pred EEEEEe-CCc---EEEEEccC---------CCCCceeEeCCCCCEEEEEcCC-Ce--EEEEE-CCceeeeecc-cCCCce
Q psy16005 116 RMISIV-ENG---AKVSSLPI---------DYEPSSISLDHEHGLVAVGGAD-SK--ISIVE-NGAKVSSLPI-DYEPSS 177 (248)
Q Consensus 116 ~l~~~~-~~~---~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~--i~~~~-~~~~~~~~~~-~~~~~~ 177 (248)
.|+... .++ +.+|++.. ........|+|+++.++..+.+ +. |+.++ .+.....+.. ......
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~ 335 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD 335 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence 988764 233 45566542 2245678899999988766653 44 44455 2323333332 233467
Q ss_pred EEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe---EEEEECC
Q psy16005 178 ISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK---VVLYRVP 245 (248)
Q Consensus 178 ~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---i~vw~~~ 245 (248)
..|+|||++|+..+.+ ..|++||+.+++... +... .......|+|||++|+.++.++. +.+++++
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 8999999988876543 358889998876432 2212 22346789999999998877653 6677764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=118.32 Aligned_cols=200 Identities=14% Similarity=0.173 Sum_probs=131.7
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (248)
..|.++|.+ +...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCC
Confidence 467788864 44444455777889999999999999877643 469999999886432 22233556689999999
Q ss_pred CEEEEE-eCCc-EEEEEccCC-----------CCCceeEeCCCCCEEEEEcC-CCeEEEEE---CCceeeeecc-cCCCc
Q psy16005 115 QRMISI-VENG-AKVSSLPID-----------YEPSSISLDHEHGLVAVGGA-DSKISIVE---NGAKVSSLPI-DYEPS 176 (248)
Q Consensus 115 ~~l~~~-~~~~-~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~i~~~~---~~~~~~~~~~-~~~~~ 176 (248)
+.|+.. +.++ ..+|.++.. .......|+|+|+.++..+. ++...+|. .+.....+.. .....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~ 331 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT 331 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC
Confidence 988754 4444 467765421 12356789999998876553 45555554 2222333322 22234
Q ss_pred eEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC---eEEEEEC
Q psy16005 177 SISLDHEHGLVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR---KVVLYRV 244 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~vw~~ 244 (248)
..+|+|||++|+..+.++ .|.+||+.+++... +. . ......+.|+|||+.|+.++.++ .+.+.++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt-~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT-D-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc-C-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 678999999998776554 59999998876532 22 1 22346789999999988776443 3444444
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.3e-16 Score=121.88 Aligned_cols=207 Identities=16% Similarity=0.228 Sum_probs=148.1
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCcee----eeeeccCCCCCeeEEEEec
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI----LKNEFHPIGGPIKDIAWSP 112 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~ 112 (248)
+.+.+|++...............|+++.|+| +..+++.|..+|+|.+||++.+... .......|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 3689999987633333335578899999999 6788999999999999999987652 1223346889999999977
Q ss_pred CCC--EEEEEeCCc-EEEEEccCC----------------------CCCceeEeCCC-CCEEEEEcCCCeEEEEE-CCc-
Q psy16005 113 DNQ--RMISIVENG-AKVSSLPID----------------------YEPSSISLDHE-HGLVAVGGADSKISIVE-NGA- 164 (248)
Q Consensus 113 ~~~--~l~~~~~~~-~~i~~~~~~----------------------~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-~~~- 164 (248)
+-. -+++++.|| +..|+++.- ...+.+.|.+. -..+++|+.+|.|.--. .+.
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 543 377776555 688886421 23456667654 45788999999988722 111
Q ss_pred --e------e-eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCCCcccccCCcCeEEEEEcCCCc-EEEEE
Q psy16005 165 --K------V-SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN-NKSLSPKAELDHLGPVTDCSFSPSNE-YLVAS 233 (248)
Q Consensus 165 --~------~-~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 233 (248)
. . ....+...+.++.++|-+..++..+.|..++||... ....+..+. .+...|++++|||-.. .++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEE
Confidence 1 1 222356678899999977755555559999999988 444433333 5677799999999875 56777
Q ss_pred cCCCeEEEEECC
Q psy16005 234 DAHRKVVLYRVP 245 (248)
Q Consensus 234 ~~d~~i~vw~~~ 245 (248)
..||.|.+||+.
T Consensus 461 d~~G~l~iWDLl 472 (555)
T KOG1587|consen 461 DGDGNLDIWDLL 472 (555)
T ss_pred cCCCceehhhhh
Confidence 889999999985
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-16 Score=114.01 Aligned_cols=116 Identities=15% Similarity=0.237 Sum_probs=91.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCe-EEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK-VRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~ 91 (248)
+...+.++++++.+.+++.-+ .|.|.+||+.+.+.+..+..|++++.+++|+++|.+|||+|..|+ |||+.+.+|+
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence 444577777777788999854 689999999999999999999999999999999999999999997 7899999998
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP 131 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~ 131 (248)
.+..+.-......|.+++|+|++++|.+.++.+ ++++.+.
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 764333322345678888988888777665443 3555443
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=120.49 Aligned_cols=218 Identities=13% Similarity=0.151 Sum_probs=156.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEE-EEECc-------CCcEEEEEccCCeEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNV-AKYSP-------SGFYIASGDISGKVRIWD 86 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~-~~~s~-------~~~~l~~~~~dg~i~iwd 86 (248)
.|...+.|+.|+.+...+++++|..+.+|.-.+......+.-....+.. +-.-+ ....++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4556678999999999999999888888765444333322222221111 11111 235788889999999887
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEc---------cCCCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSL---------PIDYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
-. ++ .......|.+.+.+-.|+|||.-|+++++||. ++|.- +....+.+++|.|+.+.++.+.. +.
T Consensus 92 k~-~r--VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h 167 (737)
T KOG1524|consen 92 KS-AR--VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GH 167 (737)
T ss_pred cc-ch--hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-Ce
Confidence 43 33 33677889999999999999999999999996 99984 35778999999999886665443 34
Q ss_pred EEE--EE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 157 ISI--VE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 157 i~~--~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
+.+ .. ..+.++--.|+.-+.++.|+|...++++|++|-..++||......... ..|.-+|++++|.|+ +.++.+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chhccceeeeeeccc-cceeee
Confidence 444 33 334455555777789999999999999999999999999876554322 258889999999999 555555
Q ss_pred cCCCeEE
Q psy16005 234 DAHRKVV 240 (248)
Q Consensus 234 ~~d~~i~ 240 (248)
+. ++++
T Consensus 245 S~-nt~R 250 (737)
T KOG1524|consen 245 SY-NTAR 250 (737)
T ss_pred ee-eeee
Confidence 43 3444
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-16 Score=109.04 Aligned_cols=150 Identities=17% Similarity=0.315 Sum_probs=102.2
Q ss_pred EEEEeCCCCCEEEEeCC-----------cEEEEEecCC-Cceeeeee-cCCcceEEEEECcCCcEEEE--EccCCeEEEE
Q psy16005 21 IVLGGDPKGKNFLYTNG-----------NSVIIRNIEN-PAISDIYT-EHSCAVNVAKYSPSGFYIAS--GDISGKVRIW 85 (248)
Q Consensus 21 ~~~~~s~~~~~l~~~~~-----------~~v~v~~~~~-~~~~~~~~-~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw 85 (248)
..+.|+|+|++|++-.+ +...+|-++. ......+. ...++|.+++|+|+|+.+++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999998876421 2344554422 23333343 23457999999999988754 4467799999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC--C
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN--G 163 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 163 (248)
|++ ++.+ ..+. ...+..+.|+|+|+++++++- +...|.+.+||. .
T Consensus 89 d~~-~~~i--~~~~--~~~~n~i~wsP~G~~l~~~g~----------------------------~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 89 DVK-GKKI--FSFG--TQPRNTISWSPDGRFLVLAGF----------------------------GNLNGDLEFWDVRKK 135 (194)
T ss_pred cCc-ccEe--Eeec--CCCceEEEECCCCCEEEEEEc----------------------------cCCCcEEEEEECCCC
Confidence 997 3322 3343 467788999999998887653 233467888884 3
Q ss_pred ceeeeecccCCCceEEEcCCCCEEEEEcC------CCcEEEEEcCCC
Q psy16005 164 AKVSSLPIDYEPSSISLDHEHGLVAVGGA------DSKVHIYELNNK 204 (248)
Q Consensus 164 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------d~~v~i~d~~~~ 204 (248)
+.+....+ ...+.++|+|||++|+++.. |+.++||+....
T Consensus 136 ~~i~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 136 KKISTFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 33433333 34688999999999998864 678999998643
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-16 Score=106.97 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=134.9
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCC--------ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNK--------EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL 130 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~ 130 (248)
..|.+-+|+|.+++|+.|+.+|.|.+..+..- ........++|.++++.++|. ..+|++++++.++-|..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W 88 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEW 88 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeee
Confidence 34667789999999999999999999987531 112234557899999999998 56788888866665553
Q ss_pred c---------------CC--------CCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeeccc-CCCceEEEcCCC
Q psy16005 131 P---------------ID--------YEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPID-YEPSSISLDHEH 184 (248)
Q Consensus 131 ~---------------~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~-~~~~~~~~s~~~ 184 (248)
. .+ ..++.+.+.|..+-++.++.|+.++.|| +|+..+.+..+ ..+.+++--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 2 11 2356778889888888888999999999 77777777754 446777764445
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCCCcccc--------cC-CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 185 GLVAVGGADSKVHIYELNNKSLSPKAEL--------DH-LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~--------~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+++|++||++++||.++++.+..+.. +| ...|-+++- +..+|++|+ .-.+.+|+++..|
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence 5789999999999999999887543321 22 233555554 456777765 4589999997653
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-15 Score=115.07 Aligned_cols=220 Identities=14% Similarity=0.192 Sum_probs=147.6
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEE-----cc-----CCeEEEEECCC
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-----DI-----SGKVRIWDTVN 89 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~-----dg~i~iwd~~~ 89 (248)
....++|++|++++.+.+..+.|++..++..+..... ..+.++.|+|.+++|.+= .. .-.+++|++++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 5778999999999999999999999888764433322 278999999999988762 11 23577999887
Q ss_pred Cceeeeeec--------------------------------------cCCCCCeeEEEEecCCC--EEEEE--eCCc---
Q psy16005 90 KEHILKNEF--------------------------------------HPIGGPIKDIAWSPDNQ--RMISI--VENG--- 124 (248)
Q Consensus 90 ~~~~~~~~~--------------------------------------~~~~~~v~~~~~~~~~~--~l~~~--~~~~--- 124 (248)
+........ .-|...+..+.++|.+. .+++- ..+|
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 431110000 01234455566665422 22221 0111
Q ss_pred -EEEEEc------------------------------------------------------------------cCCCCCc
Q psy16005 125 -AKVSSL------------------------------------------------------------------PIDYEPS 137 (248)
Q Consensus 125 -~~i~~~------------------------------------------------------------------~~~~~~~ 137 (248)
+++|.+ ...+++.
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVh 274 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVH 274 (566)
T ss_pred EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCce
Confidence 233322 1235677
Q ss_pred eeEeCCCCCEEEE--EcCCCeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCCCccc
Q psy16005 138 SISLDHEHGLVAV--GGADSKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGA---DSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 138 ~~~~~~~~~~~~~--~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~ 211 (248)
++.|+++++.+++ |-.-..+.++| .+..+..+ ...+-+++-|+|.|++++.++- .|.+.+||+.+.+.+....
T Consensus 275 dv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 275 DVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred EEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 8888888876554 45667788888 45555444 3455688999999999888775 4789999999988765554
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcC------CCeEEEEECC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDA------HRKVVLYRVP 245 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~ 245 (248)
. ..-+-+.|+|||+++++++. |+.++||+..
T Consensus 354 a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 A---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred c---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 2 23466799999999998854 7889999874
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=122.50 Aligned_cols=195 Identities=14% Similarity=0.188 Sum_probs=140.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC----------ceeeeeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP----------AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
+.|.++|.|+++++++..+++|+ ||+|+.|++... .....+.+|.+.|+.+++|+....|++++.||++
T Consensus 341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTv 420 (577)
T KOG0642|consen 341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTV 420 (577)
T ss_pred ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceE
Confidence 35999999999999999999998 999999976521 2334677999999999999988899999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEcc-----------------CCCCCceeEeCC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLP-----------------IDYEPSSISLDH 143 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~-----------------~~~~~~~~~~~~ 143 (248)
+.|+...... ..+....-.+...++.+-... ...++....+ ..+.++. ....+..+..+|
T Consensus 421 r~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 421 RLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred EeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 9999876654 212222222334445543322 1111111111 1111111 113355677888
Q ss_pred CCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 144 EHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
...+.+++..|+.|+++| .+..+.... +...++++++.|+|.+|++++.|+++++|.+....+...
T Consensus 500 ~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 500 TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 999999999999999999 666666554 556689999999999999999999999999987766443
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-15 Score=109.36 Aligned_cols=217 Identities=13% Similarity=0.131 Sum_probs=144.2
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
-.|++++|++||..+++++ +..|.|||.+++..+.......+.++-+.||||+.+|+.++-|+..++|+........+
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER 275 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence 6799999999999999997 78999999999887766545567789999999999999999999999996543322111
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCcee---eeeccc
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKV---SSLPID 172 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~ 172 (248)
..+ ..+.|....|+|+|++|+.+.....+++.+..........- .++....+.+-|..+.. ..-...
T Consensus 276 w~l--gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~--------~~~~k~~lliaDL~e~ti~ag~~l~c 345 (445)
T KOG2139|consen 276 WIL--GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLR--------PQSIKRVLLIADLQEVTICAGQRLCC 345 (445)
T ss_pred eec--cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccC--------cccceeeeeeccchhhhhhcCccccc
Confidence 222 24589999999999999998888888887765444322211 11111222223311110 011135
Q ss_pred CCCceEEEcCCCCEEEEEcCCC--------cEEEEEcCCCCCCCccccc--CCcCeEEEEEcC---CCcEEEEEcCCCeE
Q psy16005 173 YEPSSISLDHEHGLVAVGGADS--------KVHIYELNNKSLSPKAELD--HLGPVTDCSFSP---SNEYLVASDAHRKV 239 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~~~d~--------~v~i~d~~~~~~~~~~~~~--~~~~v~~~~~s~---~~~~l~~~~~d~~i 239 (248)
.++.+++|+|.|.+|++.-..+ .|.+||.+..-.......+ ......-++|+| ++++|..+=+.|.+
T Consensus 346 geaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGri 425 (445)
T KOG2139|consen 346 GEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRI 425 (445)
T ss_pred CccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCce
Confidence 6678999999999999875433 3667776654332211111 122245566665 45666666666777
Q ss_pred EEEEC
Q psy16005 240 VLYRV 244 (248)
Q Consensus 240 ~vw~~ 244 (248)
.-|++
T Consensus 426 q~ypl 430 (445)
T KOG2139|consen 426 QRYPL 430 (445)
T ss_pred Eeeee
Confidence 76654
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=118.75 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=168.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee-ecCCcceEEEEECc--CCcEEEEEccCCeEEEEECCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 89 (248)
..|.|.|..+.|+..|..+++++ |..|.+||...+.....+ .+|...|....|-| +.+.+++++.||.+++=.+..
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 45899999999999999999998 889999999887766555 48988899888988 346799999999999877653
Q ss_pred C-ceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCcE-EEEEc------------------------------------
Q psy16005 90 K-EHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENGA-KVSSL------------------------------------ 130 (248)
Q Consensus 90 ~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~-~i~~~------------------------------------ 130 (248)
. .......+..|.++|..++.-|+.. .|.+++.++. .-.++
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 3 3222455667778888888777543 3444544432 11111
Q ss_pred -------------c----------------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCce----------
Q psy16005 131 -------------P----------------------IDYEPSSISLDHEHGLVAVGGADSKISIVENGAK---------- 165 (248)
Q Consensus 131 -------------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------- 165 (248)
+ ....+++++++.++.-++++..|-.|+++.....
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence 0 1134677888877777777788888888862111
Q ss_pred ----eee-ecccC---CCceEE-EcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 166 ----VSS-LPIDY---EPSSIS-LDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 166 ----~~~-~~~~~---~~~~~~-~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
+.. ++.+. .|..+- |-|...++++|+.-|.|.||+-.+++.+..+. +....|+|+.-+|.-..||+++-|
T Consensus 379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCCCCchhhccCCc
Confidence 111 11111 133333 56888999999999999999999999877666 433489999999999999999999
Q ss_pred CeEEEEECC
Q psy16005 237 RKVVLYRVP 245 (248)
Q Consensus 237 ~~i~vw~~~ 245 (248)
..|+||--.
T Consensus 458 ~DVKIWTP~ 466 (559)
T KOG1334|consen 458 HDVKIWTPL 466 (559)
T ss_pred cceeeecCC
Confidence 999999763
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=124.19 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=143.6
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc-------
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP------- 131 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~------- 131 (248)
.|..++|-|||..|+.+.. ..+.+||...|..+ ..+.+|++.|++++|+.||+.+++|+.|.. .+|.-+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~ll--qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLL--QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccc--cccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence 7899999999988877654 57999999999865 788999999999999999999999998885 888854
Q ss_pred -CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 132 -IDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
+...+.++.|+|-...+++++-+ ..-+|. ..+.+........+.+++|..||.+++.|-.+|+|.|-+....+....
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I 169 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI 169 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE
Confidence 45678899999999999887653 345676 333444445556678999999999999999999999986544333222
Q ss_pred cc-ccCCcCeEEEEEcCCC-----cEEEEEcCCCeEEEEECC
Q psy16005 210 AE-LDHLGPVTDCSFSPSN-----EYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 210 ~~-~~~~~~v~~~~~s~~~-----~~l~~~~~d~~i~vw~~~ 245 (248)
.. .+.+++|.+++|+|.. ..++......++.+|.+.
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 22 2367899999999974 467788888888888764
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=119.83 Aligned_cols=215 Identities=16% Similarity=0.179 Sum_probs=166.7
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
....+.++.+|++++.++ .|.+..+|..++++...+. -...|.++.|-.+.+++|++- ..-+.|||-..-+.. -
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElH---C 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELH---C 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEe---e
Confidence 355699999999999987 8999999999999888774 467799999998888888764 468999996544432 2
Q ss_pred ccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cc
Q psy16005 98 FHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVEN--GA 164 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 164 (248)
+.. ...|..+.|-|..-.|+++++.|. ..-|+..+ +....+.-+|-+..+-+|...|+|.+|.. .+
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 332 367889999998888888888885 55555433 44556777888889999999999999993 23
Q ss_pred -eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 165 -KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 165 -~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.+..+.+..++.++++.++|.++++++.|..++|||+++...+.....+ .+...+++|..| +++.+....+.+|.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC--CCcccccccccc--ceeeecCCeeeeeh
Confidence 3445568889999999999999999999999999999998765555433 356778888765 44444556888884
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=119.14 Aligned_cols=227 Identities=13% Similarity=0.192 Sum_probs=157.4
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecC---CcceEEEEECc--CCcEEEEEccCCeEEEEECCCC-
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEH---SCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNK- 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~- 90 (248)
.+...+.|+|-...++++. ...|++||.+.++....+..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3577889999999999988 569999999998887766533 34688888865 5678999999999999974321
Q ss_pred --ceeeeeec-------cCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCC-----------CCCceeEeC-CCCCEE
Q psy16005 91 --EHILKNEF-------HPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPID-----------YEPSSISLD-HEHGLV 148 (248)
Q Consensus 91 --~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~-----------~~~~~~~~~-~~~~~~ 148 (248)
+......+ .+..+.-.-+.|.....+|+++++- -++|||...+ ..++.+.-+ ..|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 11111111 1111222345677766666666654 4699997543 223344332 347899
Q ss_pred EEEcCCCeEEEEECCc-----eeeee-cccCC--CceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccc-cC---C
Q psy16005 149 AVGGADSKISIVENGA-----KVSSL-PIDYE--PSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAEL-DH---L 215 (248)
Q Consensus 149 ~~~~~~~~i~~~~~~~-----~~~~~-~~~~~--~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~---~ 215 (248)
++|..||.+++||.+- .+... ++... +..+.+.++|- .|++|+.||.|++||++.......... .| .
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 9999999999999332 22222 23333 77788888665 599999999999999998532221111 22 2
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+..+++..+++...+|+|+. +.|+||++.
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 35999999999999999988 999999985
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-13 Score=104.36 Aligned_cols=229 Identities=14% Similarity=0.263 Sum_probs=150.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC-----CcEEEEEecCCC--ce--eeeeecCCcceEEEEECcCCcEEEEEcc-CCeEEEEE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-----GNSVIIRNIENP--AI--SDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWD 86 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-----~~~v~v~~~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd 86 (248)
...+..++++|++++|++.. ++.|..|.+... ++ +............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 34566789999999999874 368888887653 33 2233323445567999999999998874 79999999
Q ss_pred CCCCceeeee-ecc-----------CCCCCeeEEEEecCCCEEEEEe--CCcEEEEEcc---------------CCCCCc
Q psy16005 87 TVNKEHILKN-EFH-----------PIGGPIKDIAWSPDNQRMISIV--ENGAKVSSLP---------------IDYEPS 137 (248)
Q Consensus 87 ~~~~~~~~~~-~~~-----------~~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~---------------~~~~~~ 137 (248)
+.....+... ... .......++.|+|+++++++.. .|.+.+++++ ....++
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 9874322111 111 1234578899999999998875 4556666553 334577
Q ss_pred eeEeCCCCCEEEE-EcCCCeEEEEEC----Cc--eeeeec---c----cCCCceEEEcCCCCEEEEEcC-CCcEEEEEcC
Q psy16005 138 SISLDHEHGLVAV-GGADSKISIVEN----GA--KVSSLP---I----DYEPSSISLDHEHGLVAVGGA-DSKVHIYELN 202 (248)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~i~~~~~----~~--~~~~~~---~----~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~ 202 (248)
.+.|+|+++++.+ ...++.|.+++. +. .+..+. . ......++++|||++|+++.. .++|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 8999999987755 456778888772 21 112221 1 113567999999999888764 6789999994
Q ss_pred C--CCCCCccccc-CCcCeEEEEEcCCCcEEEEEc-CCCeEEEEECC
Q psy16005 203 N--KSLSPKAELD-HLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVP 245 (248)
Q Consensus 203 ~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~ 245 (248)
. ++........ .....+.++++|+|++|+++. .++.|.+|+++
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3 3332211111 234589999999999998876 56899999763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-14 Score=112.75 Aligned_cols=195 Identities=14% Similarity=0.200 Sum_probs=123.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCC--eEEEEECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISG--KVRIWDTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg--~i~iwd~~ 88 (248)
+...+...+|||||+.|++.+ ...|++|++.+++... +....+.+....|+|||+.|+ +.+.+| .|.++|+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 345678899999999998764 2479999998886544 333344556789999998887 444555 68888998
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cceee
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN-GAKVS 167 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~ 167 (248)
+++.. .+..+........|+|||+.++..++.. ....|+.++. +....
T Consensus 276 ~~~~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~----------------------------g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 276 SRQLS---RVTNHPAIDTEPFWGKDGRTLYFTSDRG----------------------------GKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCeE---EcccCCCCcCCeEECCCCCEEEEEECCC----------------------------CCceEEEEECCCCCEE
Confidence 87632 3334445566788999999887765321 0112333331 11111
Q ss_pred eecc-cCCCceEEEcCCCCEEEEEcCC-C--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC---CeEE
Q psy16005 168 SLPI-DYEPSSISLDHEHGLVAVGGAD-S--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH---RKVV 240 (248)
Q Consensus 168 ~~~~-~~~~~~~~~s~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~ 240 (248)
.+.. ........|+|||++++..+.+ + .|.++|+.+++... +. .........|+|||+.++..+.+ ..+.
T Consensus 325 ~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 325 RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT--DTSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc--CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 1111 1122356899999988877643 3 58889998876532 22 11122356899999988776543 3466
Q ss_pred EEECC
Q psy16005 241 LYRVP 245 (248)
Q Consensus 241 vw~~~ 245 (248)
++++.
T Consensus 402 ~~~~~ 406 (430)
T PRK00178 402 LVSIN 406 (430)
T ss_pred EEECC
Confidence 66664
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-14 Score=118.40 Aligned_cols=233 Identities=12% Similarity=0.105 Sum_probs=153.3
Q ss_pred cccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCc-------eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 15 TQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPA-------ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.|.+.+..++.++.. .++++|+ ||+|++|++.... ...++..-...+.++...+.++.+|.++.||.|++.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 366777778877655 8999997 9999999986421 122333346788999999999999999999999999
Q ss_pred ECCCCc--ee---eee--eccCCCCCeeEEEEecCC-C-EEEEEe-CCcEEEEEccC------------CCCCceeEeCC
Q psy16005 86 DTVNKE--HI---LKN--EFHPIGGPIKDIAWSPDN-Q-RMISIV-ENGAKVSSLPI------------DYEPSSISLDH 143 (248)
Q Consensus 86 d~~~~~--~~---~~~--~~~~~~~~v~~~~~~~~~-~-~l~~~~-~~~~~i~~~~~------------~~~~~~~~~~~ 143 (248)
+++... .. ... ........+..-+|.... . .++.+. ..++..|+.+. .+.+++++.+|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence 987621 11 101 111112233334454432 2 444444 45568888753 45688999999
Q ss_pred CCCEEEEEcCCCeEEEEECC--ceeeee--cccCCCceEEEcC---CCCEEEEEc--CCCcEEEEEcCCCCCCCccccc-
Q psy16005 144 EHGLVAVGGADSKISIVENG--AKVSSL--PIDYEPSSISLDH---EHGLVAVGG--ADSKVHIYELNNKSLSPKAELD- 213 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~--~~~~~~--~~~~~~~~~~~s~---~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~- 213 (248)
.++.+++|+..|.+.+||.+ ..+... +...+++.+..+| .....++++ ..+.|.+|++.++.....+...
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~ 1285 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASD 1285 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCC
Confidence 99999999999999999943 333333 3445566676665 234444444 4678999999987543322211
Q ss_pred -----------------CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 214 -----------------HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 214 -----------------~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+.-......+..-+.++++|+.|..|+.||....
T Consensus 1286 ~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1286 GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 1111222334444678999999999999998765
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.1e-14 Score=110.15 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=132.4
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (248)
..|.++|....+ .+.+..+...+...+|+|||++|+.++.+ ..|++||+.+++... +..+...+..++|+|||
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCC
Confidence 368888876444 44455677778999999999999887644 479999998876432 22344566778999999
Q ss_pred CEEEEEe-CCc---EEEEEccCC---------CCCceeEeCCCCCEEEEEcC-CC--eEEEEE-CCceeeeec-ccCCCc
Q psy16005 115 QRMISIV-ENG---AKVSSLPID---------YEPSSISLDHEHGLVAVGGA-DS--KISIVE-NGAKVSSLP-IDYEPS 176 (248)
Q Consensus 115 ~~l~~~~-~~~---~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~--~i~~~~-~~~~~~~~~-~~~~~~ 176 (248)
+.|+... .++ +.+|++... .......|+|+++.++..+. .+ .|++++ .+.....+. ......
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~ 325 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNA 325 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence 9887654 222 455555422 12345688999998876553 33 577777 222233333 334456
Q ss_pred eEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC---eEEEEEC
Q psy16005 177 SISLDHEHGLVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR---KVVLYRV 244 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~vw~~ 244 (248)
.+.|+|+|++++.++.++ .|.+||+.++.... +. . ........|+|||++|+..+.++ .+.+.+.
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~-~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT-D-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc-C-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 789999999999887765 78999988755422 11 1 12345568999999888876543 4555554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-14 Score=113.15 Aligned_cols=174 Identities=12% Similarity=0.139 Sum_probs=117.0
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc---CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (248)
.|+++|.+.. ..+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+
T Consensus 183 ~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCCCC
Confidence 7888887544 44556678889999999999999887653 468999999887643 3334456677889999998
Q ss_pred EEEEEeC-CcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec-ccCCCceEEEcCCCCEEEEEcC
Q psy16005 116 RMISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 116 ~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~ 192 (248)
.|+.... ++ ...|+++| .+.....+. .........|+|||+.|+..+.
T Consensus 259 ~la~~~~~~g-----------------------------~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 259 KVVMSLSQGG-----------------------------NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred EEEEEEecCC-----------------------------CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEEC
Confidence 8765432 11 12344445 122222232 2223466899999998887763
Q ss_pred -CC--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC---CeEEEEECCCC
Q psy16005 193 -DS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH---RKVVLYRVPDF 247 (248)
Q Consensus 193 -d~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~vw~~~~~ 247 (248)
+| .|+++|+.+++... +. .+...+....|+|||++|+..+.+ ..|.+||+.++
T Consensus 310 ~~g~~~Iy~~d~~g~~~~~-lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 310 RSGSPQLYVMNADGSNPRR-IS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCCCeEEEEECCCCCeEE-ee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 33 68888987765432 22 234456778999999999876543 46888887543
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-14 Score=111.78 Aligned_cols=227 Identities=14% Similarity=0.138 Sum_probs=155.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+...-+.+..+|||+++.+.+ .-.|++||+.+..+...-......|.-.-++.|-..++.--.|.+|.+...-...
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h-- 127 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH-- 127 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee--
Confidence 456677899999999987765 7899999998754432221223445555556666666666777777765432211
Q ss_pred eeeeccCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 94 LKNEFHPIGGPIKDIAWSP-DNQRMISIVENGAKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
....++ ..-..++++. .-..+++++...+.-.++.. ...+.++..++.+.++++|+.+|.+..||.
T Consensus 128 y~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 128 YRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 112222 2234455544 33455555555554444432 256778889999999999999999999993
Q ss_pred --Cceeeeeccc------------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC--
Q psy16005 163 --GAKVSSLPID------------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS-- 226 (248)
Q Consensus 163 --~~~~~~~~~~------------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~-- 226 (248)
...+..+... ..|+++.|+-+|-.+++|+.+|.+.|||+++.++......+..-+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 3333333322 237899999999999999999999999999999876665566778999999876
Q ss_pred CcEEEEEcCCCeEEEEECCCCC
Q psy16005 227 NEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+..+++. ....++|||-.+|+
T Consensus 285 q~~v~S~-Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWDECTGK 305 (703)
T ss_pred CceEEec-chHHhhhcccccCC
Confidence 3455555 34689999988775
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-14 Score=98.46 Aligned_cols=180 Identities=17% Similarity=0.207 Sum_probs=120.8
Q ss_pred cCCcEEEEeCCCCCE-EEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 17 RGQPIVLGGDPKGKN-FLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~-l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
-..|+++...|..+- +++|+|+.++-||+++|+..+.+++|++.|.++.--.....+++|+.||++++||.++++.+..
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence 356899999987655 4455699999999999999999999999999998855556799999999999999999987644
Q ss_pred eeccCCC--------CCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeC-------CCCCEEEEEcCCCeEEEE
Q psy16005 96 NEFHPIG--------GPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLD-------HEHGLVAVGGADSKISIV 160 (248)
Q Consensus 96 ~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~ 160 (248)
.....|+ ..|.+++ -+...+++++.-...+|.++.......+.+- -....++++++.+.+.-|
T Consensus 194 ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSY 271 (325)
T ss_pred eccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeee
Confidence 3332222 2344444 4566888888888899998765544333222 124467777777888888
Q ss_pred ECCceee-eecccCCC-ceEEE--cCCCCEEEEEcCCCcEEEE
Q psy16005 161 ENGAKVS-SLPIDYEP-SSISL--DHEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 161 ~~~~~~~-~~~~~~~~-~~~~~--s~~~~~l~~~~~d~~v~i~ 199 (248)
..+-.+. ..+..... ....+ +| -+++-.++..+.+.|+
T Consensus 272 ~l~Gvl~a~ip~~s~~c~s~s~~~~p-~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 272 TLNGVLQANIPVESTACYSASWQTSP-IKFISIAGFSNKLHIL 313 (325)
T ss_pred eeccEEEEeccCCccceeeecccCCc-eEEEEecccceeeeee
Confidence 7433333 33322211 12222 22 2355555555666654
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=112.44 Aligned_cols=156 Identities=20% Similarity=0.259 Sum_probs=108.6
Q ss_pred EEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEe
Q psy16005 62 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISL 141 (248)
Q Consensus 62 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 141 (248)
.+++|+++|..|++++.||++|||+......+ .....|...|.++.|+|||+.|++.+.+..++|+......+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~--l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI--LEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKT- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh--hhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcC-
Confidence 68999999999999999999999997776643 566678899999999999999999999988999987552221111
Q ss_pred CCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCC---C--EEEEEcCCCcEEEEEcCCCCC-----CCccc
Q psy16005 142 DHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEH---G--LVAVGGADSKVHIYELNNKSL-----SPKAE 211 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~---~--~l~~~~~d~~v~i~d~~~~~~-----~~~~~ 211 (248)
| ...+.....+.|+.|+ . .++....-+.|+.|++...+. ..+..
T Consensus 225 -~-------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~ 278 (398)
T KOG0771|consen 225 -P-------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI 278 (398)
T ss_pred -C-------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh
Confidence 0 0011112334444444 1 222223345566666543322 11111
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.....|++++.++||++++.|+.||.|.|++..+.
T Consensus 279 -~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 279 -KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred -hccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 23347999999999999999999999999998764
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-14 Score=105.95 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=164.3
Q ss_pred ccCCcEEEEeCCCCC--EEEEe-CCcEEEEEecCCCceeeee------ecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 16 QRGQPIVLGGDPKGK--NFLYT-NGNSVIIRNIENPAISDIY------TEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~--~l~~~-~~~~v~v~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
...++.+++|.-+++ .+... .+..+..+.+........+ .....+|..+... | ..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence 345677777776554 34444 3556666665554443332 2345556666554 3 3688889999999999
Q ss_pred CCCCce--eeeeeccCCCCCeeEEEEecCCCEEEE-EeCC---cEEEEEccCC-------------------CCCceeEe
Q psy16005 87 TVNKEH--ILKNEFHPIGGPIKDIAWSPDNQRMIS-IVEN---GAKVSSLPID-------------------YEPSSISL 141 (248)
Q Consensus 87 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~---~~~i~~~~~~-------------------~~~~~~~~ 141 (248)
.+.+.. -....+.. ...+..+.-++...++++ |+.. ...+|++... -.++.+.|
T Consensus 132 ~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 985431 11122222 245666777776666655 5544 3588887532 23456777
Q ss_pred CCC--CCEEEEEcCCCeEEEEECC---ceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC
Q psy16005 142 DHE--HGLVAVGGADSKISIVENG---AKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 142 ~~~--~~~~~~~~~~~~i~~~~~~---~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
-+. ...+++++.-+.+++||+. +++..+. ...++.++...|+++.+++|..-+.+..||+++++.......+-.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 777 8899999999999999944 3444554 356688999999999999999999999999999998877666788
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+.|+++..+|.++++++++-|+.++|+|+++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999999999987
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-15 Score=106.63 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=129.7
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC-CCEEEEEeCCcEEEEEcc-----
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD-NQRMISIVENGAKVSSLP----- 131 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~i~~~~----- 131 (248)
+..+..++|++.-..++++..|..|++||-...... +.+ ......|.+++|-|. +..|+.+...++.+|...
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt-~Lk-s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT-KLK-SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCc-eec-chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc
Confidence 345788999997677889999999999998763322 111 223468999999995 567888999999999863
Q ss_pred ------------------CCCCCceeEeCCCCCEEEEEc-CCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEE
Q psy16005 132 ------------------IDYEPSSISLDHEHGLVAVGG-ADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAV 189 (248)
Q Consensus 132 ------------------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~ 189 (248)
.+..++++.|.+||..+++++ .+..|.+|| .+..+.... ....+.-+.||||+.+|.+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 224578999999999999877 467899999 444433332 3445678899999999999
Q ss_pred EcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 190 GGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 190 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+.-|+..++|+............ ..+.|...+|+|+|++|+.+.
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEE
Confidence 99999999996544333223332 345899999999999876554
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=120.56 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=150.1
Q ss_pred EecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCce-----eeeeeccCCCCCeeEEEEecCCCE
Q psy16005 43 RNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEH-----ILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
|+. .|..+..+..|...+..++.++. +.++++||.||+|++||.+.-.. .....+..-...+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 553 46777788889999999998875 49999999999999999864221 112223334678999999999999
Q ss_pred EEEEeCCcE-EEEEccCC------------------CCCcee-EeC-CCC-CEEEEEcCCCeEEEEECCce--eeeec--
Q psy16005 117 MISIVENGA-KVSSLPID------------------YEPSSI-SLD-HEH-GLVAVGGADSKISIVENGAK--VSSLP-- 170 (248)
Q Consensus 117 l~~~~~~~~-~i~~~~~~------------------~~~~~~-~~~-~~~-~~~~~~~~~~~i~~~~~~~~--~~~~~-- 170 (248)
+++++.||. ++..++.. +.+.++ ++. ... ..++.+...+.+..||.+.. ...++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999986 55555431 111111 111 122 36778888899999995543 33332
Q ss_pred -ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc---EEEEEc--CCCeEEEEEC
Q psy16005 171 -IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE---YLVASD--AHRKVVLYRV 244 (248)
Q Consensus 171 -~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~--~d~~i~vw~~ 244 (248)
.++.+++++.+|.+.++++|+..|.+.+||++-+..+.....++..+++.+..+|-.+ ..++++ ..+.|.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 3556899999999999999999999999999999988888878888999988887543 444443 4688999999
Q ss_pred CCC
Q psy16005 245 PDF 247 (248)
Q Consensus 245 ~~~ 247 (248)
.+|
T Consensus 1273 ~~g 1275 (1431)
T KOG1240|consen 1273 ETG 1275 (1431)
T ss_pred ccC
Confidence 876
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-12 Score=95.45 Aligned_cols=231 Identities=13% Similarity=0.201 Sum_probs=158.5
Q ss_pred cccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCC--Cceee--eeecCCcceEEEEECcCCcEEEEEccC-CeEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIEN--PAISD--IYTEHSCAVNVAKYSPSGFYIASGDIS-GKVRIW 85 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~--~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw 85 (248)
...+.++-++|+|++++|.++. ++.|..|.++. |++.. .......+-..+++++++++++++... |.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 3557788999999999999874 46676666654 55432 122223344789999999999998764 789999
Q ss_pred ECCC-CceeeeeeccCCCCC----------eeEEEEecCCCEEEEEe--CCcEEEEEcc-------------CCCCCcee
Q psy16005 86 DTVN-KEHILKNEFHPIGGP----------IKDIAWSPDNQRMISIV--ENGAKVSSLP-------------IDYEPSSI 139 (248)
Q Consensus 86 d~~~-~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~--~~~~~i~~~~-------------~~~~~~~~ 139 (248)
-+.. |..........|.+. +....++|++++|++.. .|.+.++++. .+..++.+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9865 332222233334443 78889999999999985 6777777764 34568899
Q ss_pred EeCCCCCEEEEEc-CCCeEEEEE--C-Cceeeee------cc----cCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCC
Q psy16005 140 SLDHEHGLVAVGG-ADSKISIVE--N-GAKVSSL------PI----DYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNK 204 (248)
Q Consensus 140 ~~~~~~~~~~~~~-~~~~i~~~~--~-~~~~~~~------~~----~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~ 204 (248)
.|+|++++..+.. -+++|.+|. . ...+..+ +. ......+.++|||++|.++.. ..+|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999876554 588899887 2 1222222 11 223467889999999998864 347888887654
Q ss_pred --CCCCc-ccccCCcCeEEEEEcCCCcEEEEEcCC-CeEEEEECC
Q psy16005 205 --SLSPK-AELDHLGPVTDCSFSPSNEYLVASDAH-RKVVLYRVP 245 (248)
Q Consensus 205 --~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~vw~~~ 245 (248)
++... ....+....+.+.|+|.|++|+++..+ ..|.+|..+
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 22111 111244557899999999999998764 568888764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-13 Score=108.81 Aligned_cols=201 Identities=15% Similarity=0.152 Sum_probs=120.7
Q ss_pred CCcEEEEeCCCCCE--EEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc-CC----eEEEEE
Q psy16005 18 GQPIVLGGDPKGKN--FLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SG----KVRIWD 86 (248)
Q Consensus 18 ~~v~~~~~s~~~~~--l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~iwd 86 (248)
....+-+|||||+. +++.+ ...|++.++.+++..+ +....+.....+|||||+.|+..+. +| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 34556789999975 32222 3478899998876544 3344555667899999988876542 23 344467
Q ss_pred CCCCce-eeeeeccCCCCCeeEEEEecCCCEEEEEeCC-c-EEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 87 TVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-G-AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
+..+.. ................+|+|||+.|+..++. + ..+|.+.... .+
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~---------------------------~g 316 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP---------------------------EG 316 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc---------------------------cc
Confidence 665311 1111222222334567899999988776532 2 2333221100 01
Q ss_pred ceeeeec-ccCCCceEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC---C
Q psy16005 164 AKVSSLP-IDYEPSSISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA---H 236 (248)
Q Consensus 164 ~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d 236 (248)
.....+. .........|+|||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+.... .
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT--TSPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc--CCCCCccceEECCCCCEEEEEECCCCC
Confidence 1112222 12345678999999988876543 36999999988763322 22345678999999998875432 3
Q ss_pred CeEEEEECCCCC
Q psy16005 237 RKVVLYRVPDFE 248 (248)
Q Consensus 237 ~~i~vw~~~~~~ 248 (248)
..|.++++.+++
T Consensus 395 ~~L~~vdl~~g~ 406 (428)
T PRK01029 395 SELYLISLITKK 406 (428)
T ss_pred ceEEEEECCCCC
Confidence 578888887653
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=103.96 Aligned_cols=175 Identities=13% Similarity=0.269 Sum_probs=131.8
Q ss_pred cEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEEccCCCCC-----------
Q psy16005 71 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSSLPIDYEP----------- 136 (248)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~~~~~~~~----------- 136 (248)
..+|++-..|.|++||..+++.+ ..+.+++..+..+.|.. ....+.+++.+| +++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 56888888999999999998855 56778888888999977 456777887775 699999754333
Q ss_pred --ceeEeCCCCCEEEEEc----CCCeEEEEECCce---eeee--cccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCC
Q psy16005 137 --SSISLDHEHGLVAVGG----ADSKISIVENGAK---VSSL--PIDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 137 --~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~---~~~~--~~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~ 204 (248)
.+++....++.+++|. .+-.+.+||-+.. +..+ .|...++++.|+|+. ++|++|+.||-|.+||++..
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 3444444666777765 3567889993332 3333 367789999999954 59999999999999999865
Q ss_pred CCCCccc--ccCCcCeEEEEEcCCC-cEEEEEcCCCeEEEEECCCC
Q psy16005 205 SLSPKAE--LDHLGPVTDCSFSPSN-EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 205 ~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~ 247 (248)
.....+. ..|...|..+.|..++ +.|.+-+..+...+|+++.+
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 4322221 2477789999999887 45888888999999999876
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-14 Score=111.31 Aligned_cols=202 Identities=14% Similarity=0.207 Sum_probs=128.4
Q ss_pred CCcEEEEeCCCCCEEEEeC--C--cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEE-EccCCe--EEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--G--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISGK--VRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~--~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~--i~iwd~~~~ 90 (248)
..+.+..|||||+.|++.+ + ..|+++|+.+++... +..........+|+|||+.|+. .+.+|. |.++|+.++
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 4567889999999998864 2 379999998876543 2222334457899999998765 455664 777888877
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEccCC-----------CCCceeEeCCCCCEEEEEcC-CC-
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLPID-----------YEPSSISLDHEHGLVAVGGA-DS- 155 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~- 155 (248)
+.. .+..+.......+|+|||+.++..++.. ..+|.++.. .......|+|+++.++..+. ++
T Consensus 297 ~~~---~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 297 ALT---RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred CeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence 632 3334445567789999999988776432 355543321 11234578999998877654 34
Q ss_pred -eEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCC-C--cEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 156 -KISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD-S--KVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 156 -~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
.|..+| .+.....+..........|+|||+.|+..+.+ + .+++++.. ++....+. .+.+.+...+|+|
T Consensus 374 ~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 374 FNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred eEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc-CCCCCcCCCccCC
Confidence 345566 22223333322222345899999988776543 3 37777774 33333332 3455677888987
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-14 Score=111.97 Aligned_cols=176 Identities=10% Similarity=0.127 Sum_probs=114.9
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (248)
..|.+||.+... .+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceECCCC
Confidence 368899976443 44455677889999999999999887643 469999998876432 22233445578899999
Q ss_pred CEEEEEe-CCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecc-cCCCceEEEcCCCCEEEEEc
Q psy16005 115 QRMISIV-ENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPI-DYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 115 ~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~ 191 (248)
+.++... .++ +..|++|| .+.....+.. ......++|+|||+.|+..+
T Consensus 260 ~~l~~~~s~~g-----------------------------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~s 310 (433)
T PRK04922 260 RRLALTLSRDG-----------------------------NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTS 310 (433)
T ss_pred CEEEEEEeCCC-----------------------------CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEE
Confidence 8776532 211 12466666 2222222322 22345789999999888766
Q ss_pred C-CCc--EEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC---eEEEEECCCCC
Q psy16005 192 A-DSK--VHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR---KVVLYRVPDFE 248 (248)
Q Consensus 192 ~-d~~--v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~vw~~~~~~ 248 (248)
. +|. |+++|+.+++...... +......++|+|||++|+..+.++ .|.+||+.+++
T Consensus 311 d~~g~~~iy~~dl~~g~~~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 311 DRGGRPQIYRVAASGGSAERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 4 444 7777777665432222 233445789999999998765432 69999987763
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=116.25 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=85.7
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
.+.|..++|+|||++||+.+ ||.++|+|..+.++....+..-+...|++|||||++|++|++|..|.||.+..++.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV-- 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV-- 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE--
Confidence 35789999999999999998 999999999998888777777788999999999999999999999999999988855
Q ss_pred eeccCCCCCeeEEEEec
Q psy16005 96 NEFHPIGGPIKDIAWSP 112 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~ 112 (248)
..-++|+..|..++|+|
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 56689999999999997
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-12 Score=97.76 Aligned_cols=234 Identities=10% Similarity=0.033 Sum_probs=150.9
Q ss_pred ceecccccccccCCcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecCCc-------ceEEEEEC
Q psy16005 6 KYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEHSC-------AVNVAKYS 67 (248)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~~-------~v~~~~~s 67 (248)
.+++..++.+...+. + +||||+.++.+. +..|.+||..+.+.+..+..-.. ....++++
T Consensus 37 ~~v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CEEEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 345556665544442 4 999999887763 47999999999999887763222 23478899
Q ss_pred cCCcEEEEEc-c-CCeEEEEECCCCceeeeeeccCC-----CCCeeEEEEecCCCEEEEEeCC-c-EEEEEccC--C---
Q psy16005 68 PSGFYIASGD-I-SGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMISIVEN-G-AKVSSLPI--D--- 133 (248)
Q Consensus 68 ~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~-~-~~i~~~~~--~--- 133 (248)
|||++|+... . +..|.+.|+.+++.+.....+.. ...-..+..+.||..+....++ + ...-.... .
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE 193 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence 9999999776 3 68999999999987644443221 0111122334555554433322 1 11111111 1
Q ss_pred ---CCCceeEeCC-CCCEEEEEcCCCeEEEEEC-Cc------eeeeecc--------cCCCceEEEcCCCCEEEEEc---
Q psy16005 134 ---YEPSSISLDH-EHGLVAVGGADSKISIVEN-GA------KVSSLPI--------DYEPSSISLDHEHGLVAVGG--- 191 (248)
Q Consensus 134 ---~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~-~~------~~~~~~~--------~~~~~~~~~s~~~~~l~~~~--- 191 (248)
..+ .+.+ +++++.+..+ |.|.+.|. +. ....+.. +.....++++|+++.+++..
T Consensus 194 ~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 194 YLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred ccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 112 3344 7777777666 99999982 21 1111111 11223499999999888743
Q ss_pred -------CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEc-CCCeEEEEECCCCC
Q psy16005 192 -------ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 192 -------~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~vw~~~~~~ 248 (248)
..+.|.++|..+++.+.....+ ..+..++++||++ +|++.. .++.|.++|+.+++
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 2257999999999987776644 4689999999999 887766 57889999998874
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-13 Score=104.34 Aligned_cols=185 Identities=15% Similarity=0.218 Sum_probs=122.1
Q ss_pred CEEEEe--CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 30 KNFLYT--NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 30 ~~l~~~--~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
++++.. .++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+..... .....+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCcce
Confidence 444444 389999999999999998876555445678999999999999999999999999986543332 345788
Q ss_pred EEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeeccc--------CCCce
Q psy16005 108 IAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPID--------YEPSS 177 (248)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~--------~~~~~ 177 (248)
+++++||++++++. ..++.+.++| +.+.+..++.. ..+..
T Consensus 83 i~~s~DG~~~~v~n------------------------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a 132 (369)
T PF02239_consen 83 IAVSPDGKYVYVAN------------------------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA 132 (369)
T ss_dssp EEE--TTTEEEEEE------------------------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred EEEcCCCCEEEEEe------------------------------cCCCceeEeccccccceeecccccccccccCCCcee
Confidence 99999998887654 3345666666 34445544422 23456
Q ss_pred EEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE-cCCCeEEEEECCCC
Q psy16005 178 ISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPDF 247 (248)
Q Consensus 178 ~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~~ 247 (248)
+..+|....+++. -+.+.|.+.|....+........-........|+|++++++.+ ..++.|-++|.+++
T Consensus 133 Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 133 IVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 7778888855555 4458898889877654333232344567889999999987664 55678999998775
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-13 Score=107.96 Aligned_cols=201 Identities=14% Similarity=0.183 Sum_probs=130.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEE-EccCC--eEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISG--KVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~iwd~~~ 89 (248)
...+.+.+|+|||++|+++. ...|++||+.+++... +..+...+.+++|+||++.|+. .+.++ .|.+||+.+
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 34577889999999999874 2589999998876544 3345566778999999987764 44444 588899887
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc--EEEE--EccC---------CCCCceeEeCCCCCEEEEEcCCC-
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG--AKVS--SLPI---------DYEPSSISLDHEHGLVAVGGADS- 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~- 155 (248)
+... .+..+........|+|||+.|+..++.+ ..+| ++.. ........|+|+++.++....++
T Consensus 268 ~~~~---~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 268 KQLT---RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred CCEE---ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCC
Confidence 7532 2333444456778999999988776432 2444 4321 12234678999999998887765
Q ss_pred --eEEEEEC-CceeeeecccCCCceEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 156 --KISIVEN-GAKVSSLPIDYEPSSISLDHEHGLVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 156 --~i~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
.|.++|. ......+..........|+|||+.|+..+.++ .+++.+..... ...+. .+.+.+..++|
T Consensus 345 ~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~-~~~~~-~~~g~~~~~~w 416 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF-RARLP-LGNGDVREPAW 416 (417)
T ss_pred ceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce-eeECC-CCCCCcCCCCC
Confidence 7888883 22333333333345678999999888876653 45666644332 22222 22344555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-13 Score=105.65 Aligned_cols=222 Identities=15% Similarity=0.223 Sum_probs=142.1
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc-----------CCeEEEEECC
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-----------SGKVRIWDTV 88 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~ 88 (248)
-+-+.|||.|.+|++--...|.+|--.+-..++.+ .|. .|.-+.|||+.++|+|=+. ...++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 45789999999999998888999976665556656 465 4889999999999998652 2579999999
Q ss_pred CCceeeeeeccCCCCCe-eEEEEecCCCEEEEEeCCcEEEEEcc------------------------------------
Q psy16005 89 NKEHILKNEFHPIGGPI-KDIAWSPDNQRMISIVENGAKVSSLP------------------------------------ 131 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~~~i~~~~------------------------------------ 131 (248)
+|.....+........+ .-+.||.|++++|....+++.|+..+
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 99855333321111222 23567888888877776666655421
Q ss_pred -------------------------------------------------------------------------CCCCCce
Q psy16005 132 -------------------------------------------------------------------------IDYEPSS 138 (248)
Q Consensus 132 -------------------------------------------------------------------------~~~~~~~ 138 (248)
....+..
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~ 450 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIA 450 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheee
Confidence 0011223
Q ss_pred eEeCCCCCEEEEEcC---CCeEEEEECCc------eeeeecccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCC
Q psy16005 139 ISLDHEHGLVAVGGA---DSKISIVENGA------KVSSLPIDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSL 206 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~---~~~i~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~ 206 (248)
.+|.|.|+.+++-+. ..++.+|.... .+..+. ....+.+.|+|.|++++++. ..|.+.++|+.....
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~ 529 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL 529 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence 455566554443221 22344444111 111111 12347789999999888764 578899999986444
Q ss_pred CCcccccCCcCeEEEEEcCCCcEEEEEcC------CCeEEEEECC
Q psy16005 207 SPKAELDHLGPVTDCSFSPSNEYLVASDA------HRKVVLYRVP 245 (248)
Q Consensus 207 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~ 245 (248)
.......|. ..+.+.|.|.|+|++++++ |.--++|+++
T Consensus 530 k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 530 KDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 333333454 4588999999999999875 4445666653
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-13 Score=98.37 Aligned_cols=232 Identities=13% Similarity=0.160 Sum_probs=161.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc-----eeeeeecC------------CcceEEEEECcCC--cEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA-----ISDIYTEH------------SCAVNVAKYSPSG--FYIA 74 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-----~~~~~~~~------------~~~v~~~~~s~~~--~~l~ 74 (248)
....-|.++.|...|.+|++|. +|.|.++.-.... ....++.| ...|..+.|.+++ ..++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 3456788999999999999998 8888888643321 22233333 2457889998865 4566
Q ss_pred EEccCCeEEEEECCCCceee----------------------------------eeeccCCCCCeeEEEEecCCCEEEEE
Q psy16005 75 SGDISGKVRIWDTVNKEHIL----------------------------------KNEFHPIGGPIKDIAWSPDNQRMISI 120 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~ 120 (248)
....|.+|++|.+....... +.--..|.--|.++.++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 77889999999875432110 00112466778999999999999999
Q ss_pred eCCcEEEEEccCCC------------------CCceeEeCCC-CCEEEEEcCCCeEEEEECCce--------eeeecc--
Q psy16005 121 VENGAKVSSLPIDY------------------EPSSISLDHE-HGLVAVGGADSKISIVENGAK--------VSSLPI-- 171 (248)
Q Consensus 121 ~~~~~~i~~~~~~~------------------~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~--------~~~~~~-- 171 (248)
.+-.+-+|++.... -+++..|+|. .+.++..+..|+|++-|.++. +...+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 98889999986432 2455667775 457888899999999995421 111111
Q ss_pred ---------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC------------CcC---eEEEEEcCCC
Q psy16005 172 ---------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH------------LGP---VTDCSFSPSN 227 (248)
Q Consensus 172 ---------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------------~~~---v~~~~~s~~~ 227 (248)
-..+..+.|+++|+++++-.. -+|++||+...........-| ... -..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 123567899999999998653 579999995433222221112 122 2457899999
Q ss_pred cEEEEEcCCCeEEEEECCCC
Q psy16005 228 EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~~ 247 (248)
.++++|+..+.++++++..|
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 99999999999999997654
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=100.25 Aligned_cols=130 Identities=18% Similarity=0.305 Sum_probs=99.9
Q ss_pred EEEEEccCCeEEEEECCCCceee--------eeeccCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEccCC---------
Q psy16005 72 YIASGDISGKVRIWDTVNKEHIL--------KNEFHPIGGPIKDIAWSPDNQRMISIV-ENGAKVSSLPID--------- 133 (248)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~i~~~~~~--------- 133 (248)
+++.|-++|.+.+||+.++..+. ......|..+|.++.|.+.-..=++++ .+....|.++..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 45678889999999999874321 123456889999999987433333333 445577776532
Q ss_pred -----CCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEc
Q psy16005 134 -----YEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYEL 201 (248)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~ 201 (248)
..+..+.+-||++.+|+++.|+.|++|. +...+..+. |...+++++|+|+...+|.++.|++|.+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 3456788899999999999999999976 677777665 5667999999999999999999999999986
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=105.95 Aligned_cols=190 Identities=19% Similarity=0.267 Sum_probs=137.2
Q ss_pred cCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-E-------E
Q psy16005 56 EHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-A-------K 126 (248)
Q Consensus 56 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~-------~ 126 (248)
.+....+.+..+|||+++ |+|.+--.|++||+..-.......+. ...|.-.-++.|-..++....+. + +
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD--ae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD--AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc--ccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 567778899999999986 67888899999999876532222221 24455555555544444444333 2 3
Q ss_pred EEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeeccc-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 127 VSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPID-YEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 127 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
-+.++.+.....++++.-..-+.+++....|+-++ .|.-+..+... ..++++..++-..+|++|+.+|.|.+||.+.
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 35566677777888876555555555556666665 67777777665 6689999999999999999999999999998
Q ss_pred CCCCCccccc-----CC-----cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 204 KSLSPKAELD-----HL-----GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 204 ~~~~~~~~~~-----~~-----~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
...+..+... |. ..|+++.|+.+|-.+++|+.+|.+.|||+++-
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 7665443221 22 24999999999999999999999999999864
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=102.07 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=113.0
Q ss_pred eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC------ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-
Q psy16005 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK------EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA- 125 (248)
Q Consensus 53 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~- 125 (248)
.+.+|.+.|.++.|+.++++|++|+.|..+++|+++.. +.+ ...-..|...|.+++|...++.++++..++.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCeeEecCCCccee
Confidence 45589999999999999999999999999999998632 211 1222346789999999999999999988775
Q ss_pred EEEEccC------------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCcee------eeecccCCCceEEEcCCCC-E
Q psy16005 126 KVSSLPI------------DYEPSSISLDHEHGLVAVGGADSKISIVENGAKV------SSLPIDYEPSSISLDHEHG-L 186 (248)
Q Consensus 126 ~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~s~~~~-~ 186 (248)
...++.. .+.+..+..+|..+.+++.+.++.+.+||..... ...........+.|+|... +
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 4455432 3467788889999999999999999999943322 1112233456778888554 7
Q ss_pred EEEEcCCCcEEEEEcCC
Q psy16005 187 VAVGGADSKVHIYELNN 203 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~ 203 (248)
|++++..+-+.+||.+.
T Consensus 210 i~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRM 226 (609)
T ss_pred EEeccccCCCCceeecc
Confidence 77888888889998764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-12 Score=101.55 Aligned_cols=200 Identities=12% Similarity=0.147 Sum_probs=124.0
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (248)
.+.++|.+..+. +.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++......+ .......+|+|||+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCC
Confidence 677778665443 4455667789999999999988876543 3688999988764322222 23345789999999
Q ss_pred EEEEE-eCCc-EEEE--EccCC---------CCCceeEeCCCCCEEEEEcC-CC--eEEEEEC-Cceeeeecc-cCCCce
Q psy16005 116 RMISI-VENG-AKVS--SLPID---------YEPSSISLDHEHGLVAVGGA-DS--KISIVEN-GAKVSSLPI-DYEPSS 177 (248)
Q Consensus 116 ~l~~~-~~~~-~~i~--~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~--~i~~~~~-~~~~~~~~~-~~~~~~ 177 (248)
.|+.. ..++ ..+| ++... .......|+|+++.++..+. ++ .|+.+|. +.....+.. ......
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~ 354 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG 354 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC
Confidence 88765 3344 2444 44321 22456789999998776543 34 4556662 223333322 222345
Q ss_pred EEEcCCCCEEEEEcC-CC--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC-CC--eEEEEECC
Q psy16005 178 ISLDHEHGLVAVGGA-DS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA-HR--KVVLYRVP 245 (248)
Q Consensus 178 ~~~s~~~~~l~~~~~-d~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~vw~~~ 245 (248)
.+|+|||++|+..+. ++ .|.++|+.+++... +. .. .......|+|||+.|+..+. ++ .+.+++.+
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt-~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT-ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 789999998887654 33 46667887776422 22 11 12234589999998877644 33 36666653
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-12 Score=92.81 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=110.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecC-CCceeeeeecCC--cceEEEEECcCCcEEEE-EccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIE-NPAISDIYTEHS--CAVNVAKYSPSGFYIAS-GDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~ 91 (248)
...+|.++.++++ .+++.-.+.|+||... +.+..+.+.... ...-+++-+.+..+||. |-.-|+|+|-|+...+
T Consensus 93 f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 3467777777754 6778889999999987 556665554332 23333333334455554 4456999999998665
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeee
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSL 169 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~ 169 (248)
.-....+.+|...|.+++.+.+|..+|+++..|. -|++|| +++.+.++
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT------------------------------LIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGT------------------------------LIRIFDTEDGTLLQEL 220 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcE------------------------------EEEEEEcCCCcEeeee
Confidence 4233667889999999999999888877766552 245566 55556665
Q ss_pred cc---cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 170 PI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 170 ~~---~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
.. +..+.+++|||+..+|++++..|+++||.++..
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 43 445789999999999999999999999988753
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=110.99 Aligned_cols=165 Identities=17% Similarity=0.233 Sum_probs=118.9
Q ss_pred eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEE
Q psy16005 50 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~ 129 (248)
+...+.+|.+.|.|++|+.+|.+|++||.|-.+.|||.-..+.+. ..-.+|...|.++.|-|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh-sI~TgHtaNIFsvKFvP~t--------------- 105 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH-SISTGHTANIFSVKFVPYT--------------- 105 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee-eeecccccceeEEeeeccC---------------
Confidence 445678999999999999999999999999999999998666443 3446899999999999842
Q ss_pred ccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCce------------eeee-cccCCCceEEEcCCC-CEEEEEcCCCc
Q psy16005 130 LPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAK------------VSSL-PIDYEPSSISLDHEH-GLVAVGGADSK 195 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~-~~~~~~~~~~~s~~~-~~l~~~~~d~~ 195 (248)
..+++++|..|..|+++|.... .... -+...+..++..|++ ..+.++++||.
T Consensus 106 --------------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 106 --------------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred --------------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 2334555666666777662210 0001 123345667888888 68899999999
Q ss_pred EEEEEcCCCCCCCccc---------ccCCcCeEEEEEcCCC-cEEEEEcCCCeEEEEEC
Q psy16005 196 VHIYELNNKSLSPKAE---------LDHLGPVTDCSFSPSN-EYLVASDAHRKVVLYRV 244 (248)
Q Consensus 196 v~i~d~~~~~~~~~~~---------~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~ 244 (248)
++-||++......... .+.--...++..+|.. .+|+.|+.|-..++||.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999998743221111 0112346788999976 47888999999999994
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=111.75 Aligned_cols=199 Identities=19% Similarity=0.241 Sum_probs=138.8
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCcee-
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHI- 93 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~- 93 (248)
+.-.-++|.....+|++++ -..|+|||.........+. +....|+++.-+. .|+.++.|-.||.|++||.+.....
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred CCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence 3335678888766666665 6899999999877777665 3345677766544 5799999999999999998765421
Q ss_pred eeeeccCCCCC--eeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-e-eeee
Q psy16005 94 LKNEFHPIGGP--IKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA-K-VSSL 169 (248)
Q Consensus 94 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~ 169 (248)
.......|+.. |..+.+.+.|-. .+++|+.+|.|++||.+. . ...+
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~------------------------------elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLG------------------------------ELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCc------------------------------ceeeeccCCeEEEEecccCcccccc
Confidence 11234456655 777777775521 355566667777777322 1 1111
Q ss_pred ----cc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc-----ccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 170 ----PI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK-----AELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 170 ----~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
.. ....+++..+++...+|+|+. +.|+||++...+.... +.....+.+.+++|+|..-.+|+|+.|..
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence 11 223789999999999999998 8999999976543211 12123567899999999999999999999
Q ss_pred EEEEECCCC
Q psy16005 239 VVLYRVPDF 247 (248)
Q Consensus 239 i~vw~~~~~ 247 (248)
|.||.....
T Consensus 1375 V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1375 VSIYSCEKP 1383 (1387)
T ss_pred EEEeecCCc
Confidence 999987654
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-15 Score=117.99 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=143.4
Q ss_pred eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEE
Q psy16005 50 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVS 128 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~ 128 (248)
.++.+.+|.+.|.|+.|...|.++++|+.|..++||.++++.++ ....+|.+.++.++.+.+...+++++.|.+ ++|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34456699999999999999999999999999999999988855 788999999999999999999999998875 999
Q ss_pred EccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECC-ceeeeecc--------------------------
Q psy16005 129 SLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVENG-AKVSSLPI-------------------------- 171 (248)
Q Consensus 129 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-------------------------- 171 (248)
.++. .+.++.++|+|-. +.+.||++++||-. ..+...+.
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9864 4667889999865 67889999999843 11111100
Q ss_pred ------cCCCceEEEcCCCCEEEEE-----------cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEE-EEE
Q psy16005 172 ------DYEPSSISLDHEHGLVAVG-----------GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL-VAS 233 (248)
Q Consensus 172 ------~~~~~~~~~s~~~~~l~~~-----------~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~ 233 (248)
.....+++|..+.-.++++ -.+-.+.+|++.++....... +|...+..+.++|-+..+ .++
T Consensus 336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhhc
Confidence 0001122232222233333 334567888988887765554 799999999999977655 578
Q ss_pred cCCCeEEEEECCCC
Q psy16005 234 DAHRKVVLYRVPDF 247 (248)
Q Consensus 234 ~~d~~i~vw~~~~~ 247 (248)
+.||...|||+-.|
T Consensus 415 g~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEG 428 (1113)
T ss_pred cCCCceEeeecccC
Confidence 99999999998554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-13 Score=101.21 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=60.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC---------------
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG--------------- 80 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------- 80 (248)
..-++..+.|||.|.+|++..-..|.+|.-.....+..+ .| ..|..+.|+|.+++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee-ec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 445788899999999999998888999998776655444 23 4689999999999999876443
Q ss_pred eEEEEECCCCcee
Q psy16005 81 KVRIWDTVNKEHI 93 (248)
Q Consensus 81 ~i~iwd~~~~~~~ 93 (248)
.+.+||..++..+
T Consensus 109 ~~~vwd~~sg~iv 121 (561)
T COG5354 109 NVFVWDIASGMIV 121 (561)
T ss_pred ceeEEeccCceeE
Confidence 4999999887644
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=100.52 Aligned_cols=185 Identities=17% Similarity=0.251 Sum_probs=133.5
Q ss_pred CCCCEEEEeC-CcEEEEEecCCCceeeeeec---CCcceEEEEEC------c--------------CCcEEEEEccCCeE
Q psy16005 27 PKGKNFLYTN-GNSVIIRNIENPAISDIYTE---HSCAVNVAKYS------P--------------SGFYIASGDISGKV 82 (248)
Q Consensus 27 ~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~v~~~~~s------~--------------~~~~l~~~~~dg~i 82 (248)
|-..++|... ||.+++|+..+++....+.. -.+..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777775 99999999999887776642 23445555552 2 22357778888999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.+|++..++...+..-..|.+.|.++.++.+-..|.++ +.|..+..|+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-------------------------------~ad~~v~~~~~ 131 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-------------------------------GADLKVVYILE 131 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-------------------------------CCceeEEEEec
Confidence 99999999877666667888899988887766555554 4455555555
Q ss_pred -CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC-----CcEEEEE-
Q psy16005 162 -NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS-----NEYLVAS- 233 (248)
Q Consensus 162 -~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~- 233 (248)
..+..+... ....+.+++++|||+.+++|+ ++|++||+++++.+..+. +|.++|++++|.-+ |.+++++
T Consensus 132 ~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 132 KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred ccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeecc
Confidence 222222222 233468899999999999987 579999999999987776 89999999999877 6777665
Q ss_pred cCCCeEEEEECC
Q psy16005 234 DAHRKVVLYRVP 245 (248)
Q Consensus 234 ~~d~~i~vw~~~ 245 (248)
..+..+.+|-+.
T Consensus 209 ~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 209 AAERGITVWVVE 220 (541)
T ss_pred ccccceeEEEEE
Confidence 456667777653
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=108.58 Aligned_cols=219 Identities=10% Similarity=0.132 Sum_probs=163.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc---------------eeeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA---------------ISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
......|++|+....++++|+ ||.+++..+.+.. .-+.+.+|++.|.-+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 346788999999999999997 9999998776421 124567999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---------EEEEEccCCC-CCceeEeCCCCCEEE
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---------AKVSSLPIDY-EPSSISLDHEHGLVA 149 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---------~~i~~~~~~~-~~~~~~~~~~~~~~~ 149 (248)
|.|.+|-+-.+.......-...++.|.+++|+.||+.+....+|| -+||.-.... ....+.|++|.+.++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 999999998887543334445567899999999999887766655 4566655433 356788999999999
Q ss_pred EEcCCCeEEEEEC-Cceeeeecc-------------cCCCceEEE--------cCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 150 VGGADSKISIVEN-GAKVSSLPI-------------DYEPSSISL--------DHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 150 ~~~~~~~i~~~~~-~~~~~~~~~-------------~~~~~~~~~--------s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
.+-.+|.+.++|. +.....+.. +..+..+.| -||...|+++-.+|.+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999983 222111111 112333443 358889999999999998766655544
Q ss_pred CcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 208 PKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 208 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
.... -.-.+....|+++|..|+.++.+
T Consensus 253 vv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 253 VVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eEEe--cccEeecceecCCCcEEEEccCc
Confidence 3333 23568899999999999988653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-12 Score=100.48 Aligned_cols=176 Identities=10% Similarity=0.090 Sum_probs=111.2
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (248)
.|.++|.+.++. +.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+|||+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECCCCC
Confidence 477788775544 4455677789999999999998776543 369999998886432 222234455688999998
Q ss_pred EEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec-ccCCCceEEEcCCCCEEEEEcC-
Q psy16005 116 RMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGA- 192 (248)
Q Consensus 116 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~- 192 (248)
.|+...... .+..|+++| .+.....+. .........|+|||+.|+..+.
T Consensus 256 ~la~~~~~~----------------------------g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 256 KLAFVLSKD----------------------------GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred EEEEEEccC----------------------------CCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECC
Confidence 887543210 112345555 112222222 2223456789999998776653
Q ss_pred CC--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC-C--eEEEEECCCCC
Q psy16005 193 DS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH-R--KVVLYRVPDFE 248 (248)
Q Consensus 193 d~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~vw~~~~~~ 248 (248)
++ .|+++|+.+++...... . ........|+|||++|+..+.+ + .|.+||+.+++
T Consensus 308 ~g~~~iy~~d~~~g~~~~lt~-~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 308 GGKPQIYKVNVNGGRAERVTF-V-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CCCceEEEEECCCCCEEEeec-C-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 33 57788887776432222 1 2233457899999999877543 3 58888987753
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-11 Score=96.65 Aligned_cols=191 Identities=13% Similarity=0.112 Sum_probs=117.0
Q ss_pred CcEEEEeCCCCCE-EEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEE-EccC--CeEEEEECCCC
Q psy16005 19 QPIVLGGDPKGKN-FLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDIS--GKVRIWDTVNK 90 (248)
Q Consensus 19 ~v~~~~~s~~~~~-l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d--g~i~iwd~~~~ 90 (248)
....-.|||||+. ++..+ ...|+++|+.+++..... ...+......|+|||+.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5668999999985 66542 357999999888765544 35566677889999987764 3333 46888888777
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeee
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSL 169 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~ 169 (248)
+.. .+..+........|+|||+.|+..++.+ ....|++++ .+.....+
T Consensus 268 ~~~---~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----------------------------g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 268 TLT---QITNYPGIDVNGNFVEDDKRIVFVSDRL----------------------------GYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred cEE---EcccCCCccCccEECCCCCEEEEEECCC----------------------------CCceEEEEECCCCCeEeC
Confidence 632 2333333344568999999888776431 011233333 11111112
Q ss_pred cccCCCceEEEcCCCCEEEEEcCC---------CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC---C
Q psy16005 170 PIDYEPSSISLDHEHGLVAVGGAD---------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH---R 237 (248)
Q Consensus 170 ~~~~~~~~~~~s~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~ 237 (248)
...... ...|+|||+.|+..... ..|.+.|+.++.... +. .. .......|+|||+.|+..+.+ .
T Consensus 317 t~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT-~~-~~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 317 VFHGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LT-AN-GVNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred ccCCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CC-CC-CCcCCeEECCCCCEEEEEEccCCcE
Confidence 111111 24899999988776543 368888988876532 22 11 223458999999988766432 2
Q ss_pred eEEEEECC
Q psy16005 238 KVVLYRVP 245 (248)
Q Consensus 238 ~i~vw~~~ 245 (248)
.+.+.+++
T Consensus 393 ~L~~~~l~ 400 (419)
T PRK04043 393 ALGIIRLN 400 (419)
T ss_pred EEEEEecC
Confidence 35555553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-11 Score=91.91 Aligned_cols=207 Identities=17% Similarity=0.329 Sum_probs=133.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCC-Cceeee---ee----------cCCcceEEEEECcCCcEEEEEc-cC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN-PAISDI---YT----------EHSCAVNVAKYSPSGFYIASGD-IS 79 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~-~~~~~~---~~----------~~~~~v~~~~~s~~~~~l~~~~-~d 79 (248)
....+.++++|++++|+++. ++.+.++++.. +..... +. .......++.++|+++++++.. ..
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 34567899999999999985 89999999976 433222 11 1234578999999999887754 34
Q ss_pred CeEEEEECCCCc--eeeeeec-cCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEccC--------------------CC
Q psy16005 80 GKVRIWDTVNKE--HILKNEF-HPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLPI--------------------DY 134 (248)
Q Consensus 80 g~i~iwd~~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~--------------------~~ 134 (248)
..|.+|++.... ......+ .......+.++|+|+++++++..+.. +.++++.. ..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 589999997665 2111111 13356789999999999998887443 44444430 11
Q ss_pred CCceeEeCCCCCEEEEEc-CCCeEEEEEC----Cc--eeeeecc-cCCCceEEEcCCCCEEEEEcC-CCcEEEEEcC--C
Q psy16005 135 EPSSISLDHEHGLVAVGG-ADSKISIVEN----GA--KVSSLPI-DYEPSSISLDHEHGLVAVGGA-DSKVHIYELN--N 203 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~----~~--~~~~~~~-~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~--~ 203 (248)
....+.++|+++++.++. ..+.|.+|+. ++ .+..++. ...+..++++|+|++|++++. ++.|.+|++. +
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 356789999999877655 5678888883 22 2233333 334899999999999998874 5689999774 5
Q ss_pred CCCCCcccccCCcCeEEEEE
Q psy16005 204 KSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 204 ~~~~~~~~~~~~~~v~~~~~ 223 (248)
+.+......-.-....|+.|
T Consensus 326 G~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 326 GKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TEEEEEEEEEESSSEEEEEE
T ss_pred CcEEEecccccCCCCEEEeC
Confidence 54432221112334556655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-12 Score=92.50 Aligned_cols=235 Identities=11% Similarity=0.150 Sum_probs=172.7
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEe-cCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRN-IENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~-~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
+..+ .++...+++...-|..+-+++.+ |.+++||- .+.++.-..+. .-..+++++.+.++...|+.|-..|++.-+
T Consensus 17 l~~~-eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 17 LSKI-EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhh-cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 3344 34667788777778777788877 89999995 34455443332 346789999999999999999999999988
Q ss_pred ECCCC--ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-CCC---------CceeEeCCCCCEEEEEcC
Q psy16005 86 DTVNK--EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI-DYE---------PSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 86 d~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~---------~~~~~~~~~~~~~~~~~~ 153 (248)
.+... +.........|...+..+.|+...+.+++.+.|....|.-.. +.. ...+.+.-. +...|..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEeccc
Confidence 76532 222334556788999999999999999999988877776432 111 111111111 4455666
Q ss_pred CCeEEEEE----CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 154 DSKISIVE----NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 154 ~~~i~~~~----~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
.|.+.... .-..+..+ .+...+.+++|.|....|.+|..|..+.+||+..++.+.....+|...|..+...+--+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 67666544 12223333 45667899999999999999999999999999887776666668999999999998889
Q ss_pred EEEEEcCCCeEEEEECCC
Q psy16005 229 YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 229 ~l~~~~~d~~i~vw~~~~ 246 (248)
.+++++.||.|.+|+++.
T Consensus 254 ~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeccCCCeEEEEeccc
Confidence 999999999999999864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-10 Score=101.24 Aligned_cols=228 Identities=13% Similarity=0.123 Sum_probs=145.7
Q ss_pred cEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeec-C-------------CcceEEEEECcCCcEEEEEc-cCCeE
Q psy16005 20 PIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTE-H-------------SCAVNVAKYSPSGFYIASGD-ISGKV 82 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~-~-------------~~~v~~~~~s~~~~~l~~~~-~dg~i 82 (248)
+..+++++++..++.+ . ++.|+++|.. ++....+.. . -.....++++++++.|+++. ..+.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 3468888865544444 3 7899999975 444433322 0 12357899999887666654 45789
Q ss_pred EEEECCCCceeeeee-------ccCC-------CCCeeEEEEecCCCEEEEEeC--CcEEEEEccCC-------------
Q psy16005 83 RIWDTVNKEHILKNE-------FHPI-------GGPIKDIAWSPDNQRMISIVE--NGAKVSSLPID------------- 133 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~~------------- 133 (248)
+++|..++....... ..+. -.....++++|++..++++.. +.+.+|+....
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 999987764211000 0000 123468999996555554432 33455554211
Q ss_pred -----------CCCceeEeCCCCC-EEEEEcCCCeEEEEEC--Cceeeee-----------c-----------ccCCCce
Q psy16005 134 -----------YEPSSISLDHEHG-LVAVGGADSKISIVEN--GAKVSSL-----------P-----------IDYEPSS 177 (248)
Q Consensus 134 -----------~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~--~~~~~~~-----------~-----------~~~~~~~ 177 (248)
..+..++++|+++ ++++...++.|++||. +...... . .-..+..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 2356789999988 5566677899999993 2211100 0 0123578
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------------cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 178 ISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------------DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 178 ~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
++++++|.++++-..++.|++||..++........ +.-.....++++++|+.+++-+.++.|++||++
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 99999999888888899999999987654321110 112357889999999988888889999999998
Q ss_pred CCC
Q psy16005 246 DFE 248 (248)
Q Consensus 246 ~~~ 248 (248)
+++
T Consensus 889 ~~~ 891 (1057)
T PLN02919 889 KGE 891 (1057)
T ss_pred CCc
Confidence 763
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-12 Score=92.60 Aligned_cols=205 Identities=16% Similarity=0.170 Sum_probs=143.7
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc----eeeeeecCCcceEEEEECcC-CcEEEEEccC--CeEEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA----ISDIYTEHSCAVNVAKYSPS-GFYIASGDIS--GKVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d--g~i~iwd~~~~ 90 (248)
+.|..++.. ||.++.+.++|.+.+|....+. ....+..+ ..+..+.-++. ...+++|+.. ..+.+||++..
T Consensus 106 ~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 106 KSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred ccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence 334444432 5666666679999999987433 22333333 45666777764 4566779988 88999999987
Q ss_pred ceeeeeeccC-------CCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCCCCCEEE
Q psy16005 91 EHILKNEFHP-------IGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID-----------YEPSSISLDHEHGLVA 149 (248)
Q Consensus 91 ~~~~~~~~~~-------~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~~~~~~~ 149 (248)
+.+....-.. -.-.++++.|-+. ...|+++..-+ +++|+.+.. ..+.++...|.++.++
T Consensus 184 ~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 184 KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 6443222111 1235678889887 77888887655 699998754 3456778889999999
Q ss_pred EEcCCCeEEEEECCce--eee-e-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 150 VGGADSKISIVENGAK--VSS-L-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 150 ~~~~~~~i~~~~~~~~--~~~-~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
++...+.+..+|.+.. ... + .....+.++..+|.++++++++-|..|+|+|+++.+++..... ...++.+-+.+
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~ 341 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRD 341 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh--hccccEEEecC
Confidence 9999999999994332 222 2 2466789999999999999999999999999999777655442 34567777755
Q ss_pred C
Q psy16005 226 S 226 (248)
Q Consensus 226 ~ 226 (248)
+
T Consensus 342 ~ 342 (412)
T KOG3881|consen 342 D 342 (412)
T ss_pred C
Confidence 4
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-10 Score=87.77 Aligned_cols=207 Identities=11% Similarity=0.035 Sum_probs=131.3
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc----------CCeEEEEECCCCceeeeeeccCC-----C
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI----------SGKVRIWDTVNKEHILKNEFHPI-----G 102 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-----~ 102 (248)
+.|.+.|..+++.+..+..-..+- .+ +|||++.|+++.. +..|.+||..+.+.+....+... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 799999999999888776443333 34 9999998887755 78999999999987655554321 2
Q ss_pred CCeeEEEEecCCCEEEEEeC---CcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-----------CCce-ee
Q psy16005 103 GPIKDIAWSPDNQRMISIVE---NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-----------NGAK-VS 167 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~~~-~~ 167 (248)
.....++++|||++|++... ..+.+.|+....-+..+.. |++..++..+.+....++- .++. ..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 23447899999999998873 3467888877666665554 5565555554333333222 1221 11
Q ss_pred eecc--c--CCC-ceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCC-----Ccccc-----c-CCcCeEEEEEcCCCcEE
Q psy16005 168 SLPI--D--YEP-SSISLDH-EHGLVAVGGADSKVHIYELNNKSLS-----PKAEL-----D-HLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 168 ~~~~--~--~~~-~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~-----~~~~~-----~-~~~~v~~~~~s~~~~~l 230 (248)
..+. . ..+ ..-.+.+ +|+++.+..+ |.|.+.|+...... ..... + ..+.+.-++++|+++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111 1 000 1114455 8888888776 99999996543221 11110 0 23445559999999988
Q ss_pred EEEc----------CCCeEEEEECCCCC
Q psy16005 231 VASD----------AHRKVVLYRVPDFE 248 (248)
Q Consensus 231 ~~~~----------~d~~i~vw~~~~~~ 248 (248)
+... ..+.|.++|..+++
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCe
Confidence 8742 22589999998864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-11 Score=98.05 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=106.1
Q ss_pred CCcEEEEeCCCCCEEEEeC--Cc--EE--EEEecCCC---ceeeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEE--
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GN--SV--IIRNIENP---AISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIW-- 85 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~--~v--~v~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw-- 85 (248)
+.....+|||||+.|+... ++ .+ .+|++..+ +..+............+|+|||+.|+..+ .+|...+|
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 3445678999999988764 22 34 34676652 33333323333456789999999877654 56655555
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCc
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGA 164 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 164 (248)
++..... ....+..+...+....|+|||+.|+...... ....|.+|| .+.
T Consensus 311 ~~~~~g~-~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~----------------------------g~~~I~v~dl~~g 361 (428)
T PRK01029 311 QIDPEGQ-SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK----------------------------GVRQICVYDLATG 361 (428)
T ss_pred ECccccc-ceEEeccCCCCccceeECCCCCEEEEEEcCC----------------------------CCcEEEEEECCCC
Confidence 4432111 1123333345667888999999888765321 013455666 222
Q ss_pred eeeeec-ccCCCceEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 165 KVSSLP-IDYEPSSISLDHEHGLVAVGGA---DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 165 ~~~~~~-~~~~~~~~~~s~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
....+. .........|+|||+.|+.... ...|+++|+.+++..... ...+.+...+|+|-.
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAFP 426 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCCC
Confidence 222232 2234567899999998775433 346888999877653222 244556788898854
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-10 Score=80.70 Aligned_cols=215 Identities=14% Similarity=0.185 Sum_probs=118.0
Q ss_pred EEeCCCCCEEEEeCCcEEEEEecCCC--ceeeeee---cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 23 LGGDPKGKNFLYTNGNSVIIRNIENP--AISDIYT---EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 23 ~~~s~~~~~l~~~~~~~v~v~~~~~~--~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
++.+++|+.||...|..|.|-..... ..+...+ .....=.-++||||+.+||.+...|+|+++|+...+.. ...
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcC
Confidence 56789999999999998888765432 1222222 22233468999999999999999999999999764421 111
Q ss_pred ----c-cCCCCCeeEEEEecCC-------CEEEEEeCCcEEEEEc--------------c----CCCCCceeEeCCCCCE
Q psy16005 98 ----F-HPIGGPIKDIAWSPDN-------QRMISIVENGAKVSSL--------------P----IDYEPSSISLDHEHGL 147 (248)
Q Consensus 98 ----~-~~~~~~v~~~~~~~~~-------~~l~~~~~~~~~i~~~--------------~----~~~~~~~~~~~~~~~~ 147 (248)
. .....+|..+.|.+.. ..|+....+.++-+-+ . .+..+.++.++|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 0 1123456666665432 2222222222221111 1 2345667777777777
Q ss_pred EEEEcCCCeEEEEECCceeeeecccCCCceEE---EcCCCCEEEEEcCCCc------EEEEEcCCCCCCCcccccCCcCe
Q psy16005 148 VAVGGADSKISIVENGAKVSSLPIDYEPSSIS---LDHEHGLVAVGGADSK------VHIYELNNKSLSPKAELDHLGPV 218 (248)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~l~~~~~d~~------v~i~d~~~~~~~~~~~~~~~~~v 218 (248)
|++|+....= .+. .......+++-. -+|..+. ++..+|+. ..++.+-+.+... ........|
T Consensus 162 LlVgG~~~~~----~~~---s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i 232 (282)
T PF15492_consen 162 LLVGGCEQNQ----DGM---SKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGI 232 (282)
T ss_pred EEEeccCCCC----Ccc---ccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee-ccccCCCce
Confidence 7766643220 000 000000111110 1121111 11221211 1233322222111 111245679
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 219 TDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..|..||||+.||+...+|.|.+|++.+.
T Consensus 233 ~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 233 FKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 99999999999999999999999999865
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-11 Score=91.67 Aligned_cols=222 Identities=14% Similarity=0.154 Sum_probs=134.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC----eEEEEECCCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG----KVRIWDTVNK 90 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~ 90 (248)
.-+.|.+++.+|+|++++.++ ...+.+.|+++++....-+...+-|+.+.|||+++++|-+--+| .|+++|+.++
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 457899999999999999998 56999999999987766566677899999999999999876554 6999999988
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE------EEEEcc--CCCCCceeEe-----CCCCCEEE-EEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA------KVSSLP--IDYEPSSISL-----DHEHGLVA-VGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~------~i~~~~--~~~~~~~~~~-----~~~~~~~~-~~~~~~~ 156 (248)
+.....+ ..+.-.+-+|.||+++|...+.... .++++. ....+.-+.+ +|-.+..- ..+..+.
T Consensus 480 Kiy~vTT---~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e 556 (668)
T COG4946 480 KIYDVTT---PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGE 556 (668)
T ss_pred eEEEecC---CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccc
Confidence 7543222 2344456789999999988774321 222221 1111111111 11100000 0111122
Q ss_pred EEEEECCceeeeecccCC-CceEEEcCCCC--------------EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEE
Q psy16005 157 ISIVENGAKVSSLPIDYE-PSSISLDHEHG--------------LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDC 221 (248)
Q Consensus 157 i~~~~~~~~~~~~~~~~~-~~~~~~s~~~~--------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~ 221 (248)
+-+=+.......++.+.. -.+++--.+++ +.-.+-..|.+.+||+++.+... -...+.++
T Consensus 557 ~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-----~k~nvss~ 631 (668)
T COG4946 557 VDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-----YKDNVSSF 631 (668)
T ss_pred eehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH-----HhcccceE
Confidence 111100011111111000 01111111222 12223456788999998876521 23568999
Q ss_pred EEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 222 SFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 222 ~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|+|++.++. -.||++++++++.
T Consensus 632 rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 632 RLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEcCCCCEEEE-EeCCeEEEEeccc
Confidence 99999999888 6789999999875
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.7e-10 Score=81.38 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=138.1
Q ss_pred CcEEEEEecCCC--cee-eeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCC--CceeeeeeccCCCCCeeEE
Q psy16005 37 GNSVIIRNIENP--AIS-DIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVN--KEHILKNEFHPIGGPIKDI 108 (248)
Q Consensus 37 ~~~v~v~~~~~~--~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~v~~~ 108 (248)
+..|++|++++. +.. ..+....+..+-++|+|+++.|+++..+ |.|..|.++. |+....-.......+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 678999998742 221 1223566778999999999999987554 6777777764 5533222222223445889
Q ss_pred EEecCCCEEEEEeCCc--EEEEEccCC-------------C----------CCceeEeCCCCCEEEEEc-CCCeEEEEE-
Q psy16005 109 AWSPDNQRMISIVENG--AKVSSLPID-------------Y----------EPSSISLDHEHGLVAVGG-ADSKISIVE- 161 (248)
Q Consensus 109 ~~~~~~~~l~~~~~~~--~~i~~~~~~-------------~----------~~~~~~~~~~~~~~~~~~-~~~~i~~~~- 161 (248)
+++++|++++++.... +.++-++.+ . .+....++|+++++++.. ....|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 9999999999987543 344443211 1 145667899999888765 345677777
Q ss_pred -CCceee----eecccCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCC--CCC-----Ccccc--cCCcCeEEEEEcCC
Q psy16005 162 -NGAKVS----SLPIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNK--SLS-----PKAEL--DHLGPVTDCSFSPS 226 (248)
Q Consensus 162 -~~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~--~~~-----~~~~~--~~~~~v~~~~~s~~ 226 (248)
.++... .++....++.++|+|++++..+.++ +++|.+|..... +.. ..+.. .......++..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 333222 2244566899999999998887775 889999998874 211 11111 12445678899999
Q ss_pred CcEEEEEcC-CCeEEEEECC
Q psy16005 227 NEYLVASDA-HRKVVLYRVP 245 (248)
Q Consensus 227 ~~~l~~~~~-d~~i~vw~~~ 245 (248)
|++|+++.. ...|.+|.+.
T Consensus 255 GrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CCEEEEecCCCCeEEEEEEc
Confidence 999988854 3467777654
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-12 Score=92.23 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=109.8
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceee---eee-----cCCcceEEEEECc-CCcEEEEEccCCe
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD---IYT-----EHSCAVNVAKYSP-SGFYIASGDISGK 81 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~---~~~-----~~~~~v~~~~~s~-~~~~l~~~~~dg~ 81 (248)
.....|...|.++.++.|++.++++.|=.|.+|+++-..... .++ ....-|++..|+| ..+.++-.+..|+
T Consensus 158 v~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 158 VYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred eccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 345678899999999999999999999999999987433221 122 2345688999999 4577888888999
Q ss_pred EEEEECCCCceee----eee----------ccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCC-----------
Q psy16005 82 VRIWDTVNKEHIL----KNE----------FHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEP----------- 136 (248)
Q Consensus 82 i~iwd~~~~~~~~----~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~----------- 136 (248)
|++-|++.....- .+. +.+--..|..+.|+++|+++++-..-.+++|++.++..+
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHH
Confidence 9999998432110 001 111124678899999999999988888999998655332
Q ss_pred ---------------ceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 137 ---------------SSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 137 ---------------~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
..++|+.++..+++|+....+++++
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 3456677777777777777777777
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=112.19 Aligned_cols=186 Identities=12% Similarity=0.240 Sum_probs=130.4
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+-..+.++.-+|...+.++|+ ||.+++|....++.+..++ .-+..|+.+.|+.+|+.+..+..||.+.+|.... +
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k-- 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-K-- 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-c--
Confidence 445677788889888888887 9999999988877766554 2347899999999999999999999999999873 2
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECC-----ceeee
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENG-----AKVSS 168 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~ 168 (248)
.....+.|+.....+.|-. ..+++++. .+.++.+.+||+. ..+.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~----------------------------s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGR----------------------------SSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhcccc----------------------------CCCCCcccchhcccCcccceee-
Confidence 3356677888888888765 44444432 1344566666621 1222
Q ss_pred ecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 169 LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 169 ~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|....+++++-|....|++|+.+|.|++||++..+.+..+.. +. ...++++++..|.++||++..
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccc
Confidence 34566677777777777777777777777777776665433331 33 445677777777777777654
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=87.82 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=133.6
Q ss_pred cEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee--eeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 20 PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS--DIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
..++.|++.+..++++. +|.+.+-+...+... +.++.|.-++.-..|+. +.+.+++|+.|+.+..||++..+...-
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788999998888875 788776554444433 47889999999999986 567899999999999999984332211
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE---CCceeeeeccc
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE---NGAKVSSLPID 172 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~ 172 (248)
....-|...|.+|.-+| |.+.++++|+.|..|++|| .++++..-+..
T Consensus 204 ~n~kvH~~GV~SI~ss~------------------------------~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~ 253 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSP------------------------------PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG 253 (339)
T ss_pred ecceeeecceEEEecCC------------------------------CCCceEEEeccccceeeeehhcccCccccCccc
Confidence 22345677777776665 3455777888888999998 44666666677
Q ss_pred CCCceEEEcCCCC--EEEEEcCCCcEEEEEcCCCCCCC----cccccCCcCeEEEEEcCCCcEEEEEc-CCCeEE-EEEC
Q psy16005 173 YEPSSISLDHEHG--LVAVGGADSKVHIYELNNKSLSP----KAELDHLGPVTDCSFSPSNEYLVASD-AHRKVV-LYRV 244 (248)
Q Consensus 173 ~~~~~~~~s~~~~--~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~-vw~~ 244 (248)
..|..+..+|.-. .|+++-.+| .+|-+...+.... .....|.+-+..-.|.....+|++++ .|+.++ +|-.
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 8888899988433 444444444 6777776554331 12224666666667744445788865 477755 8865
Q ss_pred CCC
Q psy16005 245 PDF 247 (248)
Q Consensus 245 ~~~ 247 (248)
-++
T Consensus 333 ~t~ 335 (339)
T KOG0280|consen 333 ITG 335 (339)
T ss_pred ccC
Confidence 554
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-12 Score=103.19 Aligned_cols=146 Identities=17% Similarity=0.206 Sum_probs=106.3
Q ss_pred EeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCC
Q psy16005 24 GGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG 102 (248)
Q Consensus 24 ~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (248)
.++++.-++++|+ -+.|.+|+....+....+.+|.+.|.++.|+-||+++++.|.|.++++|++++.+... ...-+|.
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHs 218 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHS 218 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-ccccccc
Confidence 3566777788887 8899999987444444578999999999999999999999999999999999988654 3455799
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec--ccCCCceEE
Q psy16005 103 GPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP--IDYEPSSIS 179 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~--~~~~~~~~~ 179 (248)
..+..+.|.|. .++++++| -+.++|+ .+..+..+. ....+..++
T Consensus 219 aRvw~~~~~~n--~i~t~ged-------------------------------ctcrvW~~~~~~l~~y~~h~g~~iw~~~ 265 (967)
T KOG0974|consen 219 ARVWACCFLPN--RIITVGED-------------------------------CTCRVWGVNGTQLEVYDEHSGKGIWKIA 265 (967)
T ss_pred ceeEEEEeccc--eeEEeccc-------------------------------eEEEEEecccceehhhhhhhhcceeEEE
Confidence 99999999886 56655544 4444443 233333222 123356667
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 180 LDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
..++...+++++.|+.+++|++.+
T Consensus 266 ~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 266 VPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EcCCceEEEeeccCcchhhhhhhc
Confidence 777777777777777777777654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-09 Score=80.25 Aligned_cols=214 Identities=8% Similarity=0.109 Sum_probs=137.9
Q ss_pred CcEEEEeCC-CCCEEEEeC--CcEEEEEecCCCceeeeeecCCcce--EEEEECcCCcEEEEEc-----cCCeEEEEECC
Q psy16005 19 QPIVLGGDP-KGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAV--NVAKYSPSGFYIASGD-----ISGKVRIWDTV 88 (248)
Q Consensus 19 ~v~~~~~s~-~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~-----~dg~i~iwd~~ 88 (248)
+...++.+| .+..++++. +....+||..+++....+....+.- -.-.||+||++|++.- ..|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 455788899 455666665 6688999999999887765433332 2467999999999864 34889999998
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCC--CEEEEEcCCCeEEEEE--CCc
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEH--GLVAVGGADSKISIVE--NGA 164 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~--~~~ 164 (248)
. .....-++..|.-....+.+.|||+.|+++..+ + .-+|+. ..+-....+..+...| +++
T Consensus 86 ~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG-I--------------~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 86 R-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGG-I--------------ETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred C-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC-C--------------ccCcccCceecChhhcCCceEEEecCCCc
Confidence 3 223446677777778889999999888876432 1 111221 1222234444555554 555
Q ss_pred eeeeec-----ccCCCceEEEcCCCCEEEEEcCCC-------cEEEEEcCCCCCCCc----ccccCCcCeEEEEEcCCCc
Q psy16005 165 KVSSLP-----IDYEPSSISLDHEHGLVAVGGADS-------KVHIYELNNKSLSPK----AELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 165 ~~~~~~-----~~~~~~~~~~s~~~~~l~~~~~d~-------~v~i~d~~~~~~~~~----~~~~~~~~v~~~~~s~~~~ 228 (248)
.+.... +..++..++++++|..++..-..| -|.+++....-.... ....-.+.+-+|++++++.
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~ 229 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGR 229 (305)
T ss_pred eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCC
Confidence 555533 234578899999987666554333 244444433211111 1113457899999999998
Q ss_pred EEEEE-cCCCeEEEEECCCCC
Q psy16005 229 YLVAS-DAHRKVVLYRVPDFE 248 (248)
Q Consensus 229 ~l~~~-~~d~~i~vw~~~~~~ 248 (248)
+++++ -..+.+.+||..+++
T Consensus 230 ~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 230 LIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred EEEEECCCCCEEEEEECCCCC
Confidence 77555 567899999998874
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=90.84 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=106.3
Q ss_pred eEEEEECcCCcEEEEEccCCeEEEEECCCCce-eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCcee
Q psy16005 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSI 139 (248)
Q Consensus 61 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 139 (248)
...+..+|+++++|.+..+....++++..... ........-....+++.|..+......+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~d------------------ 126 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVAD------------------ 126 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEe------------------
Confidence 44556678889999888888877777765432 00001111112233334433333222211
Q ss_pred EeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 140 SLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
..+....+.+|. .+.....+.+-.-+..++++||+++++++..|..|++-.......+..+..+|..-
T Consensus 127 ----------kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF 196 (390)
T KOG3914|consen 127 ----------KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF 196 (390)
T ss_pred ----------ecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh
Confidence 122333344444 23334444455557899999999999999999999999988887777888899999
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|..++.-++ +.|++++.|+++++||+.+|+
T Consensus 197 VS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 197 VSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred eeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 999998765 458999999999999999875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-10 Score=80.37 Aligned_cols=200 Identities=12% Similarity=0.077 Sum_probs=120.0
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-------cCCcceEEEEECcC------CcEEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-------EHSCAVNVAKYSPS------GFYIASG 76 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-------~~~~~v~~~~~s~~------~~~l~~~ 76 (248)
.++.....+=.-++||||+..||.+. .|+|+++|+...+.. .+. .....|..+.|-+- ...|+.-
T Consensus 37 qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 37 QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence 34555555667899999999999996 899999998754332 222 22356777777542 1246666
Q ss_pred ccCCeEEEEECCCC-----ceeeeeeccC-CCCCeeEEEEecCCCEEEEEeCC------------cEEEEEccCCCCCce
Q psy16005 77 DISGKVRIWDTVNK-----EHILKNEFHP-IGGPIKDIAWSPDNQRMISIVEN------------GAKVSSLPIDYEPSS 138 (248)
Q Consensus 77 ~~dg~i~iwd~~~~-----~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~------------~~~i~~~~~~~~~~~ 138 (248)
..+|.++-|-+..+ +....+.+.. +...|.++.++|..+.|++++.. |+..|.+-.+.+-..
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence 78888887775322 2223334433 36789999999999998888632 345566543333222
Q ss_pred eEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc
Q psy16005 139 ISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
.....+...-......+..++....-..........+..+..||||..||+...+|.|.+|++.+-+......
T Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 2111111111111111111111100000111224457789999999999999999999999998876654443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-10 Score=96.74 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=129.7
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecC-----------------CcceEEEEECc-CCcEEEEEc
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEH-----------------SCAVNVAKYSP-SGFYIASGD 77 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~-~~~~l~~~~ 77 (248)
..+..++++++++.|+++. ++.|+++|+.++... .+.+- -.....++++| ++.++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 4578899999988777764 578999998765432 22110 11235799999 566667777
Q ss_pred cCCeEEEEECCCCceeeee------eccC------CCCCeeEEEEecCCCEEEEEeC--CcEEEEEccCC----------
Q psy16005 78 ISGKVRIWDTVNKEHILKN------EFHP------IGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPID---------- 133 (248)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~------~~~~------~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~~---------- 133 (248)
.++.|++||..++...... ...+ .-.....++++|+++.|+++.. +.+++|++...
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 8899999998776432100 0000 1124567999999987766653 34677776421
Q ss_pred ---------------------CCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cceeeeecc---------------cCCCc
Q psy16005 134 ---------------------YEPSSISLDHEHGLVAVGGADSKISIVEN-GAKVSSLPI---------------DYEPS 176 (248)
Q Consensus 134 ---------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~---------------~~~~~ 176 (248)
..+..++++++|+++++...++.|++||. +..+..+.. -..+.
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 13567888999999999999999999993 333332221 12467
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
.++++++|+++++-+.++.|++||+.+++.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 899999999888888899999999988764
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-11 Score=97.10 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=135.9
Q ss_pred EEeCCCCCEEEEe-CCcEEEEEecCCCceeeeeecCCcce-----EEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 23 LGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAV-----NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 23 ~~~s~~~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
..+.-+...++.+ +++.+.+||...+.....+. +...+ .-+.++++.-++++|+.-+.|.+|+....+.. .
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--~ 169 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP--I 169 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc--c
Confidence 3444455555555 58899999988777666553 22222 22334667778999999999999998843322 3
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCC
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEP 175 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 175 (248)
.+.+|.+.+..+.|+.||+++++.++|.. ++|.+.......+ .-+.|...+
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~----------------------------~~fgHsaRv 221 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC----------------------------TGFGHSARV 221 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc----------------------------cccccccee
Confidence 57899999999999999988887766653 5665543322221 223456667
Q ss_pred ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 176 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..+++.|+ .++++++|.+.++|+....+.. ... +| ...|..++..++...+++++.|+.+++|++..
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceeh-hhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 78889988 8999999999999976655443 333 44 45689999999999999999999999999753
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-10 Score=82.54 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=154.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc-----eeeeeecCC------------cceEEEEECcCC--cEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA-----ISDIYTEHS------------CAVNVAKYSPSG--FYIA 74 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-----~~~~~~~~~------------~~v~~~~~s~~~--~~l~ 74 (248)
.....|+++.|...|.++++|. +|.|.++.-.... ....++.|. ..|..+.|-.++ ..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4557899999999999999998 7899888755422 122344443 357788887643 4566
Q ss_pred EEccCCeEEEEECCCCce-------------------------e----------------eeeeccCCCCCeeEEEEecC
Q psy16005 75 SGDISGKVRIWDTVNKEH-------------------------I----------------LKNEFHPIGGPIKDIAWSPD 113 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~-------------------------~----------------~~~~~~~~~~~v~~~~~~~~ 113 (248)
..+.|.+|++|.+..... + .+.....|.--+.++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 667899999998754310 0 00011345667789999999
Q ss_pred CCEEEEEeCCcEEEEEccCCC------------------CCceeEeCCCC-CEEEEEcCCCeEEEEECCce--------e
Q psy16005 114 NQRMISIVENGAKVSSLPIDY------------------EPSSISLDHEH-GLVAVGGADSKISIVENGAK--------V 166 (248)
Q Consensus 114 ~~~l~~~~~~~~~i~~~~~~~------------------~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--------~ 166 (248)
.+.++++.+-.+-+|++.... -+++..|+|.. +.+...+..|.|++-|.++. +
T Consensus 184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 999999888888999986432 24455677764 46667888999999884421 1
Q ss_pred eeec-----------ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC------------CcCe---EE
Q psy16005 167 SSLP-----------IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH------------LGPV---TD 220 (248)
Q Consensus 167 ~~~~-----------~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------------~~~v---~~ 220 (248)
.... .-..+..+.|+++|+++++-+. -+|+|||++..+.......-| ...| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1111 1123567899999999887654 579999998765432222111 2233 35
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 221 CSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 221 ~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+.||.|.+.+++|+..+..-+|-+
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcccccccccccceeeecc
Confidence 788999999999988877777653
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=80.08 Aligned_cols=234 Identities=12% Similarity=0.100 Sum_probs=144.9
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC----CCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE----NPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
+......+++++.++++...|+++- .|++.-+.+. .....+....|...+..+-|+...+++++.+.|..+.---
T Consensus 63 I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 63 IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence 3334456789999999999999986 7788777543 4455666778899999999988778888877775543221
Q ss_pred CCCCc---------------------------------------eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EE
Q psy16005 87 TVNKE---------------------------------------HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AK 126 (248)
Q Consensus 87 ~~~~~---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~ 126 (248)
.+.+. ......+.+|.+.+.+++|.+..+.|+++..+. +.
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred eccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 11111 112244567888899999998888888887655 58
Q ss_pred EEEccCCCC-----------CceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecc-cCC--------C-----------
Q psy16005 127 VSSLPIDYE-----------PSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPI-DYE--------P----------- 175 (248)
Q Consensus 127 i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~--------~----------- 175 (248)
+|++..... +..+...+.-+.+.+++.||.|.+|+........+. ... +
T Consensus 223 ~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~ 302 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDR 302 (404)
T ss_pred EEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhh
Confidence 888865433 334444455667888899999999996654433221 000 0
Q ss_pred ----------------ceEEEcCCCCEEEEEcCCCcEEEEEcCCC-------CCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 176 ----------------SSISLDHEHGLVAVGGADSKVHIYELNNK-------SLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 176 ----------------~~~~~s~~~~~l~~~~~d~~v~i~d~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
.+...+.+.....+-+..-.+++-|.-.. ....... .-...|+.+.+...-..|++
T Consensus 303 k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~ph-ei~tgItamhlqetlglLvT 381 (404)
T KOG1409|consen 303 KQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPH-EIKTGITAMHLQETLGLLVT 381 (404)
T ss_pred hhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccc-ccccceeEEEhhhhccceee
Confidence 00011111111111122223444443211 1111111 11346889988888889999
Q ss_pred EcCCCeEEEEECCC
Q psy16005 233 SDAHRKVVLYRVPD 246 (248)
Q Consensus 233 ~~~d~~i~vw~~~~ 246 (248)
++.|+.|+|||++.
T Consensus 382 sG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 382 SGTDRVIKIWDVRS 395 (404)
T ss_pred cCCceEEEEEechh
Confidence 99999999999864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-09 Score=82.79 Aligned_cols=187 Identities=15% Similarity=0.244 Sum_probs=126.2
Q ss_pred eCCCCCEEEEeCCcEEEEEecCCCceeeeeec-----------CCcceEEEE-ECc-CCcEEEEEccCCeEEEEECCCCc
Q psy16005 25 GDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-----------HSCAVNVAK-YSP-SGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 25 ~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~-----------~~~~v~~~~-~s~-~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.+.||+.++....|.|++||.++......--+ ...+..-+. |++ +|.+++..|. |...|.+...+-
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 46789999999999999999877544321101 011111222 444 6788887775 677777765554
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCC-eEEEEE-CCce-eee
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS-KISIVE-NGAK-VSS 168 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~~~-~~~ 168 (248)
.+ ++ ++...|.-..+.-+++- ++.|..|| .+-++| .+.. ...
T Consensus 353 ~i---qv-~~~~~VrY~r~~~~~e~-------------------------------~vigt~dgD~l~iyd~~~~e~kr~ 397 (668)
T COG4946 353 SI---QV-GKKGGVRYRRIQVDPEG-------------------------------DVIGTNDGDKLGIYDKDGGEVKRI 397 (668)
T ss_pred eE---Ec-CCCCceEEEEEccCCcc-------------------------------eEEeccCCceEEEEecCCceEEEe
Confidence 32 22 34555666666555543 34455555 677777 2333 333
Q ss_pred ecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC----CeEEEEEC
Q psy16005 169 LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH----RKVVLYRV 244 (248)
Q Consensus 169 ~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~vw~~ 244 (248)
.+.-..+.++..+|+|++++++.....+.++|+.++.....-. ...+-|+.+.|+|+++++|.+--+ ..|+++|+
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm 476 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM 476 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence 3345568899999999999999999999999999998743332 456789999999999999988544 47899998
Q ss_pred CCCC
Q psy16005 245 PDFE 248 (248)
Q Consensus 245 ~~~~ 248 (248)
.+++
T Consensus 477 ~~~K 480 (668)
T COG4946 477 DGGK 480 (668)
T ss_pred CCCe
Confidence 8754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-09 Score=83.01 Aligned_cols=174 Identities=9% Similarity=0.056 Sum_probs=106.3
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcE-EEEEcc---CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFY-IASGDI---SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 113 (248)
..|.+-|.+... .+.+.... ......|+|||+. ++..+. +..|.++|+.+++..... ...+......|+||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCC
Confidence 356666655443 33333333 7789999999984 654433 356999999888753222 23455667789999
Q ss_pred CCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecc-cCCCceEEEcCCCCEEEEEc
Q psy16005 114 NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPI-DYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 114 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~ 191 (248)
|+.++..... ..+..|++++ .+.....+.. ........|+|||+.|+..+
T Consensus 244 G~~la~~~~~----------------------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~S 295 (419)
T PRK04043 244 GSKLLLTMAP----------------------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVS 295 (419)
T ss_pred CCEEEEEEcc----------------------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEE
Confidence 9888764421 1123455555 2222333322 22234568999999777765
Q ss_pred C-CC--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC---------CeEEEEECCCCC
Q psy16005 192 A-DS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH---------RKVVLYRVPDFE 248 (248)
Q Consensus 192 ~-d~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~vw~~~~~~ 248 (248)
. .+ .|+++|+.+++.......+. ....|||||++|+..+.. ..|.+.|+++++
T Consensus 296 dr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 296 DRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 3 23 68888988776633332121 124899999998776543 367888887653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-08 Score=71.21 Aligned_cols=205 Identities=16% Similarity=0.233 Sum_probs=130.4
Q ss_pred EEEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEEC-cCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 22 VLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYS-PSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 22 ~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
+..|.+ ++.++++-. .+.|+.|+..+++... +... . ...+.+. ++++++++ ... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeec
Confidence 577888 555554443 8899999988765543 3222 2 5667777 67655544 444 455569988865433333
Q ss_pred c--C-CCCCeeEEEEecCCCEEEEEeCCc-------EEEEEccCC----------CCCceeEeCCCCCEEE-EEcCCCeE
Q psy16005 99 H--P-IGGPIKDIAWSPDNQRMISIVENG-------AKVSSLPID----------YEPSSISLDHEHGLVA-VGGADSKI 157 (248)
Q Consensus 99 ~--~-~~~~v~~~~~~~~~~~l~~~~~~~-------~~i~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~i 157 (248)
. . .....+.++++|+|+..++..... -.+|.+... ..+..++++|+++.|+ +-+..+.|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccccee
Confidence 2 1 345788999999999776665332 245555433 3356889999998665 56777888
Q ss_pred EEEEC---Ccee---e---eecccC-CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE-cCC
Q psy16005 158 SIVEN---GAKV---S---SLPIDY-EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF-SPS 226 (248)
Q Consensus 158 ~~~~~---~~~~---~---~~~~~~-~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~-s~~ 226 (248)
..++. +..+ . .+.... .+..++++.+|++.++....+.|.++|.+ ++.......+ ...+++++| .|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTT
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCC
Confidence 88872 2211 1 112221 36789999999988877778999999988 7665555544 347899999 467
Q ss_pred CcEEEEE
Q psy16005 227 NEYLVAS 233 (248)
Q Consensus 227 ~~~l~~~ 233 (248)
.+.|+..
T Consensus 237 ~~~L~vT 243 (246)
T PF08450_consen 237 GKTLYVT 243 (246)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 6666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=87.53 Aligned_cols=225 Identities=15% Similarity=0.175 Sum_probs=146.8
Q ss_pred CCcEEEEeCCCCCEEEEe--CC---cEEEEEecCCCc---eeeeee-----cCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYT--NG---NSVIIRNIENPA---ISDIYT-----EHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~--~~---~~v~v~~~~~~~---~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
..+...+|.+....+++. .. ..+.+-...... .+..+. ...+.|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 456777888776655443 21 234443333222 122221 23467999999999998999999999999
Q ss_pred E----ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE-----EEc-------------------------
Q psy16005 85 W----DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV-----SSL------------------------- 130 (248)
Q Consensus 85 w----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i-----~~~------------------------- 130 (248)
. +...........+ ...|.+++||||+..|+....++..+ |+.
T Consensus 102 ~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 6555554333333 57899999999999999887665322 111
Q ss_pred -c---------------------------CCCCCceeEeCCCCCEEEEEcC------CCeEEEEE-CCceeeeec-ccCC
Q psy16005 131 -P---------------------------IDYEPSSISLDHEHGLVAVGGA------DSKISIVE-NGAKVSSLP-IDYE 174 (248)
Q Consensus 131 -~---------------------------~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~-~~~~~~~~~-~~~~ 174 (248)
+ .+.....++|-.||.++|+.+- -..+++|+ .|.....-+ ..+-
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gL 258 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGL 258 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCc
Confidence 0 0012346778999999998764 25789999 444333222 2333
Q ss_pred CceEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCCCcccc---cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 175 PSSISLDHEHGLVAVGGA---DSKVHIYELNNKSLSPKAEL---DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
-.+++|.|.|++||+... ...|.+|.-+.-+ ...+.. .....|..+.|++|+..||..-.|. |++|-..+.
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 468999999999998764 3457777754322 122221 3456799999999999999877554 999987664
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=84.10 Aligned_cols=199 Identities=12% Similarity=0.175 Sum_probs=122.7
Q ss_pred EEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCC--cEEEE-----EccCCeEEEEECCCCc--
Q psy16005 21 IVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG--FYIAS-----GDISGKVRIWDTVNKE-- 91 (248)
Q Consensus 21 ~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~iwd~~~~~-- 91 (248)
.+..|++|..+.+--..+.+.+|++...+.+. -.-|...|+.+.+||.+ ..+|+ .+.-+.|+||......
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 46778888776666667788888876633221 12345667777777642 23332 2233345555443100
Q ss_pred ------------------------e-----------------------------eeeeeccCCCCCeeEEEEecCCCEEE
Q psy16005 92 ------------------------H-----------------------------ILKNEFHPIGGPIKDIAWSPDNQRMI 118 (248)
Q Consensus 92 ------------------------~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (248)
. .....+. ..++|.++.|+|+++.++
T Consensus 208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~ 286 (566)
T KOG2315|consen 208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFA 286 (566)
T ss_pred chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEE
Confidence 0 0011111 268999999999999888
Q ss_pred EEeC---CcEEEEEccC-------CCCCceeEeCCCCCEEEEEcC---CCeEEEEE--CCceeeeecccCCCceEEEcCC
Q psy16005 119 SIVE---NGAKVSSLPI-------DYEPSSISLDHEHGLVAVGGA---DSKISIVE--NGAKVSSLPIDYEPSSISLDHE 183 (248)
Q Consensus 119 ~~~~---~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~ 183 (248)
++.. ..+.+++++. .++-.++-|+|.|++++.++- .|.+.+|| ..+.+..+.. ...+-+.|+||
T Consensus 287 VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~Pd 365 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPD 365 (566)
T ss_pred EEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCC
Confidence 7753 3456777653 345678899999999887664 47899999 3333333322 23356799999
Q ss_pred CCEEEEEcC------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 184 HGLVAVGGA------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 184 ~~~l~~~~~------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
|++|++++. |+.++||+........... ......+.|-|
T Consensus 366 Ge~flTATTaPRlrvdNg~KiwhytG~~l~~~~f---~sEL~qv~W~P 410 (566)
T KOG2315|consen 366 GEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF---KSELLQVEWRP 410 (566)
T ss_pred CcEEEEEeccccEEecCCeEEEEecCceeehhhh---hHhHhheeeee
Confidence 999999874 6789999987554322211 11355566654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-09 Score=76.35 Aligned_cols=193 Identities=14% Similarity=0.138 Sum_probs=126.7
Q ss_pred EEeCCCCCEEEEeC------CcEEEEEecC-CCceeeeeecCCcceEEEEECcCCcEEEEEc------------------
Q psy16005 23 LGGDPKGKNFLYTN------GNSVIIRNIE-NPAISDIYTEHSCAVNVAKYSPSGFYIASGD------------------ 77 (248)
Q Consensus 23 ~~~s~~~~~l~~~~------~~~v~v~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------ 77 (248)
-.|||||++|++.. .|.|-|||.. +.+.+.++..|.-.-..+.+.|||+.|+.+.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 56999999999973 4799999998 5666777877766677889999998887763
Q ss_pred cCCeEEEEECCCCceeeeeec--cCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCC
Q psy16005 78 ISGKVRIWDTVNKEHILKNEF--HPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
.+.++...|..+++.+.+..+ ..|...+..+++.++|..++..-..+- .. ..-.+++.-..++
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~------~~---------~~~PLva~~~~g~ 200 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD------PG---------DAPPLVALHRRGG 200 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC------CC---------ccCCeEEEEcCCC
Confidence 223466677778887666666 347778899999988876665432220 00 0011333333333
Q ss_pred eEEEEECCceeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 156 KISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
.+...+..... .......+-++++++++.++++.+ .-+.+.+||..+++.+.... -..+..++-.+++ ++++.+
T Consensus 201 ~~~~~~~p~~~-~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 201 ALRLLPAPEEQ-WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred cceeccCChHH-HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCC
Confidence 33333311111 112345678999999999887666 46789999999998865443 2346777777766 566555
Q ss_pred C
Q psy16005 235 A 235 (248)
Q Consensus 235 ~ 235 (248)
.
T Consensus 276 ~ 276 (305)
T PF07433_consen 276 Q 276 (305)
T ss_pred C
Confidence 4
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=95.18 Aligned_cols=191 Identities=13% Similarity=0.167 Sum_probs=131.4
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC-----ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEE
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-----EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAK 126 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 126 (248)
..+.+|...|..++--.+.+.+++++.|.+|++|.++.. ...+..+.+.|+.+|.++.|-.+.+++++ .++++.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S-cD~giH 807 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS-CDGGIH 807 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-ccCcce
Confidence 346689888888877677788999999999999998642 22255778899999999999998877765 467789
Q ss_pred EEEccCC------------CCCceeEeCC--CCCEEE-EEcCCCeEEEEECCc--eeeeecc-----c-CCCceEEEcCC
Q psy16005 127 VSSLPID------------YEPSSISLDH--EHGLVA-VGGADSKISIVENGA--KVSSLPI-----D-YEPSSISLDHE 183 (248)
Q Consensus 127 i~~~~~~------------~~~~~~~~~~--~~~~~~-~~~~~~~i~~~~~~~--~~~~~~~-----~-~~~~~~~~s~~ 183 (248)
+|+--.. .....+..-+ +..++. .++...+++++|.+. ....+.. + .-+.+++..|.
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 9985322 2223333323 233343 447888999999443 3333322 1 23578999999
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE-EECC
Q psy16005 184 HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL-YRVP 245 (248)
Q Consensus 184 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v-w~~~ 245 (248)
|++++++-.+|.|.+.|.++++.+..+. +-......++ .|..+.|+....|..+.+ |...
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhc
Confidence 9999999999999999999999766544 2222333333 355566666666666666 6543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.9e-09 Score=87.89 Aligned_cols=218 Identities=17% Similarity=0.220 Sum_probs=140.3
Q ss_pred CCcEEEEeCCCCCEEEEeC-----C--cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc---CCeEEEEEC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-----G--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDT 87 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-----~--~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~ 87 (248)
..-..++|-.||.++|+.+ + ..++||+-+ |+....-..-.+--.+++|.|.|++||+... ...|.+|.-
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec
Confidence 3455799999999999863 3 589999955 6654444333344457899999999998754 356777775
Q ss_pred CCCceeeeeecc--CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcc-------------CCCCCceeEeCCCCC-EEEEE
Q psy16005 88 VNKEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVENGAKVSSLP-------------IDYEPSSISLDHEHG-LVAVG 151 (248)
Q Consensus 88 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~~~-~~~~~ 151 (248)
+.-+ .-.+.++ .....|..+.|++|+..|+....+.+.+|... .......+.|+|... .+...
T Consensus 289 NGLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 289 NGLR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred CCcE-eeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 4322 1223333 44568999999999999999999889998753 123344588888654 45555
Q ss_pred cCCCeEEEEECCceeeeecccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcc---cccCCcCeEEEEEcCCC
Q psy16005 152 GADSKISIVENGAKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKA---ELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~~v~~~~~s~~~ 227 (248)
..++.+..++-.-....- -..+|+.. .+++.. ...+.+-.++..-.++-+ ......+|.+++|++++
T Consensus 368 t~~g~~~~~~~~~~v~~s--------~~~~~~D~g~vaVID-G~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSRS--------PGSSPNDNGTVAVID-GNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred ecCCcEEEEEEEEEEEec--------CCCCccCceEEEEEe-CCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 665666554411111000 00112112 233322 235777777665543322 12346789999999999
Q ss_pred cEEEEEcCCCeEEEEECCC
Q psy16005 228 EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~ 246 (248)
..+++...||.|.+|....
T Consensus 439 ~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CeEEEEECCCCEEEEEecC
Confidence 8899999999999998543
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-09 Score=86.19 Aligned_cols=225 Identities=16% Similarity=0.211 Sum_probs=150.7
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCC------------cEEEEEccCCeEEE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG------------FYIASGDISGKVRI 84 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~dg~i~i 84 (248)
+..-.++.|+|.| ++|+|+...|.+.|..+-+.++.+..|...|+.+.|.|-. -.||++...|.|.+
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred cccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3446688999987 8899999999999999999999999999999999998721 25778888899999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEec---CCCEEEEE--eCCcEEEE---------EccCCCCC-ceeEeCCC-CCEE
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSP---DNQRMISI--VENGAKVS---------SLPIDYEP-SSISLDHE-HGLV 148 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~--~~~~~~i~---------~~~~~~~~-~~~~~~~~-~~~~ 148 (248)
||...+... ..+..|..++..++|-+ +.+.++.+ +...+.+| .......+ .++.++|- .+.+
T Consensus 94 ~d~~~~s~~--~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 94 VDFVLASVI--NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEehhhhhh--hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 999887744 56677888999999876 33333222 23333444 44433333 44667763 4455
Q ss_pred EEEcCCCeEEEEE---------CCceeeeec-ccC----------------CC---------ceEEEcCCCCEEEEEcCC
Q psy16005 149 AVGGADSKISIVE---------NGAKVSSLP-IDY----------------EP---------SSISLDHEHGLVAVGGAD 193 (248)
Q Consensus 149 ~~~~~~~~i~~~~---------~~~~~~~~~-~~~----------------~~---------~~~~~s~~~~~l~~~~~d 193 (248)
..-+..|.+.+.+ .++..+.-. +.. .. -.++|+|.-+.++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 5555556655544 111111110 000 00 135678877655555667
Q ss_pred CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC--cEEEEEcCCCeEEEEECC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN--EYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~vw~~~ 245 (248)
..+.++|++-.......... .+.+.-+.|-|++ ..|++...||.+.+|-.+
T Consensus 252 rellv~dle~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred cceEEEcchhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 77999999877766555432 3445556676765 578999999999999754
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-10 Score=89.61 Aligned_cols=236 Identities=16% Similarity=0.120 Sum_probs=149.4
Q ss_pred CCcCcceecccccccccCCcEEEEeCCCCCEEEEeC-----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEE
Q psy16005 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS 75 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 75 (248)
|...+...+.-+.. .+..+-..|+|...++++++ .|.|.||- ++|++.+... .+-.+++++|+|..-.|+.
T Consensus 1 MtLYfDtkIE~~Ds--davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 1 MTLYFDTKIEFLDS--DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred Cceeecceeecccc--cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhh
Confidence 44444444444432 34445578999999999873 68999985 7787655442 2334567999999888899
Q ss_pred EccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCCC-------------------
Q psy16005 76 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDYE------------------- 135 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~------------------- 135 (248)
|-.-|.+.+|...+.+.. .....|+.++..+.|+++|..++++..-|. .+|.+...+.
T Consensus 77 gwe~g~~~v~~~~~~e~h--tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~c 154 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETH--TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWC 154 (1416)
T ss_pred ccccceeEEEecCCceee--eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEE
Confidence 999999999998776632 445578999999999999999999987664 6776531000
Q ss_pred ------------------------------------Ccee--EeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCCCc
Q psy16005 136 ------------------------------------PSSI--SLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYEPS 176 (248)
Q Consensus 136 ------------------------------------~~~~--~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~ 176 (248)
..+. .-.|+|..+..++.+|+|+..| .++.......+..+
T Consensus 155 fRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~v- 233 (1416)
T KOG3617|consen 155 FRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEV- 233 (1416)
T ss_pred EecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchH-
Confidence 0000 1236778889999999999999 55555544433331
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcC-C----------------------------CCC--CCcccccCCcCeEEEEEcC
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELN-N----------------------------KSL--SPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~-~----------------------------~~~--~~~~~~~~~~~v~~~~~s~ 225 (248)
.+-|.+-..-+.+-..+-++.++-+. + |-. ...........+++++++.
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~ 313 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE 313 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec
Confidence 11222211112222222222221110 0 000 0111112456799999999
Q ss_pred CCcEEEEEcCCCeEEEEE
Q psy16005 226 SNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 226 ~~~~l~~~~~d~~i~vw~ 243 (248)
.+..|..|...|.+.+|.
T Consensus 314 ~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 314 KEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred cceEEEecccCCcEEEee
Confidence 999999999999999995
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-08 Score=70.75 Aligned_cols=203 Identities=16% Similarity=0.181 Sum_probs=128.0
Q ss_pred cEEEEEecCCCc--eeeeeecCCcceEEEEECc-----CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEE
Q psy16005 38 NSVIIRNIENPA--ISDIYTEHSCAVNVAKYSP-----SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 38 ~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 110 (248)
..+.+|++.+.. .+..+ +.+.|-| ...+||.|+..|...+|...+.+... .....|...|.-+.-
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~-~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL-YQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccce-eeecccccchhhhhh
Confidence 456677765543 22222 3455555 34679999999999999998766432 222223332221111
Q ss_pred ecC-CCEEEEEe-CCcEEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEE---CCceeee---eccc
Q psy16005 111 SPD-NQRMISIV-ENGAKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVE---NGAKVSS---LPID 172 (248)
Q Consensus 111 ~~~-~~~l~~~~-~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~---~~~~ 172 (248)
..| .-.+..++ +...++.++..+ -...++.+++++++.++.+....|..|. .++.+.. .+..
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 011 11122222 222344444321 2267888999999999999999998886 3333222 2233
Q ss_pred CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc----ccccCCcCeEEEEEcCCCc--EEEEEcCCCeEEEEECCC
Q psy16005 173 YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK----AELDHLGPVTDCSFSPSNE--YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~----~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~~~~ 246 (248)
..-.+..|+.....+|++..||++.|||++....+.. ....|.+.++.+.|+|-|. +|+..-.-+.+.+-|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 4457788999999999999999999999987554322 2234899999999998764 455555567899999887
Q ss_pred CC
Q psy16005 247 FE 248 (248)
Q Consensus 247 ~~ 248 (248)
++
T Consensus 284 ~~ 285 (344)
T KOG4532|consen 284 YV 285 (344)
T ss_pred Cc
Confidence 64
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=87.40 Aligned_cols=193 Identities=19% Similarity=0.250 Sum_probs=138.9
Q ss_pred eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCcE-EE
Q psy16005 51 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENGA-KV 127 (248)
Q Consensus 51 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~-~i 127 (248)
...+..|.+.|..+.|+..|..|++|+.|..|.+||...+.....+ ..+|...|....|-| +.+.+++++.++. ++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f-~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF-ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc-ccccccchhhhhccCCCCCcCceeccccCceee
Confidence 3456789999999999999999999999999999999888754322 357888888888887 3567777777663 44
Q ss_pred EEc-------------cCCCCCceeEeCCCCC-EEEEEcCCCeEEEEECCce-----eeeecccC----CCceEEEcCCC
Q psy16005 128 SSL-------------PIDYEPSSISLDHEHG-LVAVGGADSKISIVENGAK-----VSSLPIDY----EPSSISLDHEH 184 (248)
Q Consensus 128 ~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-----~~~~~~~~----~~~~~~~s~~~ 184 (248)
-.+ ++...+..++..|+.. .+.+++.|+.+.-+|.... +.....+. ....++.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 332 3456677788887754 6778999999998883221 11112222 34678888855
Q ss_pred C-EEEEEcCCCcEEEEEcCCCCCC------Ccccc-----cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 185 G-LVAVGGADSKVHIYELNNKSLS------PKAEL-----DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 185 ~-~l~~~~~d~~v~i~d~~~~~~~------~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
. .+++|+.|-.+++||.+.-... ..+.. ...-.|++++|+.++.-|+++-.|-.|+++.-
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 5 8999999999999998753322 11211 22456999999988877777777888988843
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-08 Score=78.11 Aligned_cols=210 Identities=12% Similarity=0.035 Sum_probs=117.0
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEE-EEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCC--
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNV-AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP-- 104 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 104 (248)
+..++.++ ++.++.+|..+|+........ ..+.+ ... .+..++.++.+|.+..||.++++.+...........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 44455544 778888888788776544322 22221 111 345677778899999999998886654433211000
Q ss_pred -eeEEEEecCCCEEEEEe----------CCcEEEEEccCCCCC--------ceeEeCC--CCCEEEEEcCCCeEEEEE--
Q psy16005 105 -IKDIAWSPDNQRMISIV----------ENGAKVSSLPIDYEP--------SSISLDH--EHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 105 -v~~~~~~~~~~~l~~~~----------~~~~~i~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~i~~~~-- 161 (248)
....... ++ .++.+. .+|..+|........ ..+.-+| .+..+.+++.++.++.+|
T Consensus 182 ~~~sp~~~-~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 182 GSASPVIA-DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred CCCCCEEE-CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 0001111 12 233332 334445554321110 0011111 245677788899999999
Q ss_pred CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 162 NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
+++.+....... ...+. .++..+++++.+|.++.+|..+++.+-............... .+..|++++.+|.+++
T Consensus 260 tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 260 SGRVLWKRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred CCcEEEeeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence 566665554221 12222 245678888899999999999987643321111111222222 3568889999999999
Q ss_pred EECCCCC
Q psy16005 242 YRVPDFE 248 (248)
Q Consensus 242 w~~~~~~ 248 (248)
+|..+||
T Consensus 335 ~d~~tG~ 341 (377)
T TIGR03300 335 LSREDGS 341 (377)
T ss_pred EECCCCC
Confidence 9998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-10 Score=79.07 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=63.0
Q ss_pred CCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC-CcEEEEEcCCCeEEEEECCC
Q psy16005 174 EPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS-NEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 174 ~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~ 246 (248)
.+.+++-+|..+ .+++|+.||.+-+||.++...+......|+.++..+-|+|. +..|++++.||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 378888888554 77888999999999999998777777789999999999995 56899999999999999763
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-09 Score=84.89 Aligned_cols=222 Identities=14% Similarity=0.160 Sum_probs=152.0
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.+|.+.|.-+.|+.+.+.|-++. +|.|.+|-+-.+.-..... ..++.|.+++|+.||..+...-.||.|.+=.++..
T Consensus 68 eGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 68 EGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred ccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 46899999999999999998887 9999999998876544332 34567899999999999999999999988777654
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------------------CCCCceeEe-------
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------------------DYEPSSISL------- 141 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------------------~~~~~~~~~------- 141 (248)
+ +....+.+ .....+.|++|.+.++.+-.+| +.+++.+. +..+..+.|
T Consensus 148 R-IwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~ 224 (1189)
T KOG2041|consen 148 R-IWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQP 224 (1189)
T ss_pred e-ecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcccc
Confidence 3 33334432 2344788999988777765544 57776532 122333443
Q ss_pred -CCCCCEEEEEcCCCeEEEEEC--CceeeeecccCCCceEEEcCCCCEEEEEcCC---------CcEEEEEcCCCCCCCc
Q psy16005 142 -DHEHGLVAVGGADSKISIVEN--GAKVSSLPIDYEPSSISLDHEHGLVAVGGAD---------SKVHIYELNNKSLSPK 209 (248)
Q Consensus 142 -~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---------~~v~i~d~~~~~~~~~ 209 (248)
.|+...++++..+|.+.+... ...-..+.....+....|+++|..|++++.+ +.|.+|..- |+....
T Consensus 225 v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gt 303 (1189)
T KOG2041|consen 225 VPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGT 303 (1189)
T ss_pred CCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEE
Confidence 357789999999999988751 1122223445667889999999999998864 246666543 333333
Q ss_pred ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 210 AELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 210 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
+. -....|++++|-..|-.++.+ .|+.|++
T Consensus 304 lk-vpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 304 LK-VPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred Ee-cCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 33 345678899997666555544 2444444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-07 Score=70.04 Aligned_cols=166 Identities=14% Similarity=0.189 Sum_probs=108.7
Q ss_pred cEEEEeC-CCCCEEEEeCCcEEEEEecCCCceeeeeec-----CCcceEEEEECcCCcEEEEEccC--------CeEEEE
Q psy16005 20 PIVLGGD-PKGKNFLYTNGNSVIIRNIENPAISDIYTE-----HSCAVNVAKYSPSGFYIASGDIS--------GKVRIW 85 (248)
Q Consensus 20 v~~~~~s-~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw 85 (248)
...+++. +++.++++.. +.+.++|..+++....... .....+.+++.|+|++.++.... |.|..+
T Consensus 42 ~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred CceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 6677777 6665555554 4445559888865544432 34568899999999977765433 557777
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC------------------C-CCCceeEeCCCCC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------------------D-YEPSSISLDHEHG 146 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~------------------~-~~~~~~~~~~~~~ 146 (248)
+.. ++.. .... .-...+.++|+|+++.|+.+....-++|.++. . ..+-.++++.+|+
T Consensus 121 ~~~-~~~~--~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 121 DPD-GKVT--VVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp ETT-SEEE--EEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred CCC-CeEE--EEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 776 4422 1111 23557899999999998877655444444321 1 1245688899999
Q ss_pred EEEEEcCCCeEEEEE-CCceeeeeccc-CCCceEEEc-CCCCEEEEE
Q psy16005 147 LVAVGGADSKISIVE-NGAKVSSLPID-YEPSSISLD-HEHGLVAVG 190 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~-~~~~~~~~~~~-~~~~~~~~s-~~~~~l~~~ 190 (248)
++++....+.|..++ .++.+..+..+ ..+++++|. |+.+.|++.
T Consensus 197 l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 998888899999999 77777777766 578899994 665655543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=83.30 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=101.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
..|.+.|.++.++.+-..|.+++ |..+..|+....+..+.....+..+.+++.+||+..+++++ ++|++||+++++.
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev 176 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV 176 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE
Confidence 56899999999999999999887 99999999999999999999899999999999999999987 5899999999995
Q ss_pred eeeeeccCCCCCeeEEEEecC-----CCEEEEEe--CCcEEEEEccC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPD-----NQRMISIV--ENGAKVSSLPI 132 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~--~~~~~i~~~~~ 132 (248)
+ ..+.+|.++|+++.|..+ |.+++++. +.++.+|....
T Consensus 177 v--~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 177 V--ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred E--EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5 788999999999999887 77887765 45567887765
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-10 Score=58.43 Aligned_cols=38 Identities=34% Similarity=0.768 Sum_probs=36.0
Q ss_pred ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 49 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
+++..+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-08 Score=70.66 Aligned_cols=179 Identities=16% Similarity=0.046 Sum_probs=118.1
Q ss_pred cCCcEEEEeCC---CCC-EEEEe-CCcEEEEEecCCCceeeeeecCC------cceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 17 RGQPIVLGGDP---KGK-NFLYT-NGNSVIIRNIENPAISDIYTEHS------CAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 17 ~~~v~~~~~s~---~~~-~l~~~-~~~~v~v~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
...+..+.|.. +|. .++-+ ..|.|.++.....+....+.+-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34455566643 344 22223 27888888765443333332211 124578899999999999999999966
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECC--
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENG-- 163 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 163 (248)
+...........++.|.-+++...|+.... +++.+|+.|+.+..||.+
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~p------------------------------nlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEP------------------------------NLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCC------------------------------ceEEecCCCceEEEEEecCC
Confidence 665555444457888888888888876432 456667777888888844
Q ss_pred -ceeee--ecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCC-CCCCCcccccCCcCeEEEEEcCCC
Q psy16005 164 -AKVSS--LPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNN-KSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 164 -~~~~~--~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
+.+.. ..+...|.++.-+| .+.++++|+.|-.|++||.++ ++++... .-.+.|..+.++|.-
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEI 265 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--ccccceEEEEecchh
Confidence 22222 23456677777776 567999999999999999995 4443322 345789999999853
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-09 Score=86.34 Aligned_cols=210 Identities=13% Similarity=0.139 Sum_probs=134.0
Q ss_pred CCcEEEEEecCCC---ceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEe
Q psy16005 36 NGNSVIIRNIENP---AISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 111 (248)
Q Consensus 36 ~~~~v~v~~~~~~---~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 111 (248)
+...-.+|++... .....+.+|...|+.+-|+|. ...+++++.|-.+..||+++..... ............++|+
T Consensus 89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~-ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF-YSTSSWRSAASQVKWN 167 (1081)
T ss_pred CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce-eeeecccccCceeeec
Confidence 3444556665432 223345689999999999994 5688999999999999999876432 3344445567789998
Q ss_pred c-CCCEEEEEeCCcEEEEEccCCCCCce-----------eEeCC-CCCEEEEEcCCCeEEEEEC----CceeeeecccCC
Q psy16005 112 P-DNQRMISIVENGAKVSSLPIDYEPSS-----------ISLDH-EHGLVAVGGADSKISIVEN----GAKVSSLPIDYE 174 (248)
Q Consensus 112 ~-~~~~l~~~~~~~~~i~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~ 174 (248)
. ++..+++.-.+.+.+|+++.+..+.+ +.+.. ....+.+.+.|++++.|+- .+..+......+
T Consensus 168 yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p 247 (1081)
T KOG0309|consen 168 YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP 247 (1081)
T ss_pred ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCc
Confidence 7 55666666667789999987665432 22221 2346778899999999993 333444455566
Q ss_pred CceEEEcCCCC--EEEEEcCCCcEEEEEcC---------CCCCCCcccccCCcCeEEEEEcCCC----------cEEEEE
Q psy16005 175 PSSISLDHEHG--LVAVGGADSKVHIYELN---------NKSLSPKAELDHLGPVTDCSFSPSN----------EYLVAS 233 (248)
Q Consensus 175 ~~~~~~s~~~~--~l~~~~~d~~v~i~d~~---------~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~ 233 (248)
+..-.+-|-|+ ++.-.-.+..+.+++.+ ++........+|...|....|-..+ -.|++-
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW 327 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence 65556666444 22222222244444433 3332223334788887776664322 268999
Q ss_pred cCCCeEEEEECCC
Q psy16005 234 DAHRKVVLYRVPD 246 (248)
Q Consensus 234 ~~d~~i~vw~~~~ 246 (248)
+.|..+++|.+.+
T Consensus 328 SkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDS 340 (1081)
T ss_pred ecCCceEeeeccH
Confidence 9999999998754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-08 Score=76.49 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=114.8
Q ss_pred EEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEE-ECc--CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCC--C
Q psy16005 31 NFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAK-YSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG--P 104 (248)
Q Consensus 31 ~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~-~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~ 104 (248)
.++.+ .++.++.+|..+++.+-.+........... -+| .+..++.+..+|.+..+|.++++.+.......... .
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 44444 589999999999987766543222111000 011 23467788889999999999987654433211000 0
Q ss_pred ------e-eEEEEecCCCEEEEEeCC-cEEEEEccCCCCCce------eEeCCCCCEEEEEcCCCeEEEEE--CCceeee
Q psy16005 105 ------I-KDIAWSPDNQRMISIVEN-GAKVSSLPIDYEPSS------ISLDHEHGLVAVGGADSKISIVE--NGAKVSS 168 (248)
Q Consensus 105 ------v-~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~ 168 (248)
+ ....+ .+..++.++.+ .+..++......... ......+..+++++.+|.+..+| +++.+..
T Consensus 227 ~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 227 LERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred hhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 0 01111 13344444333 234444332211110 11112456777888999999999 5666654
Q ss_pred ec-ccCC-CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe-EEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 169 LP-IDYE-PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPV-TDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 169 ~~-~~~~-~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
.. .... ...... .+..+++++.+|.|+++|..+++.+..... +...+ .+..+. + ..|+.++.||.|+.+
T Consensus 305 ~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~-~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 305 NDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT-DGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 42 2221 122222 466889999999999999999988655542 22222 233333 3 358888899998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-07 Score=68.67 Aligned_cols=205 Identities=12% Similarity=0.069 Sum_probs=120.7
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEE--ECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeE------E
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAK--YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD------I 108 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~------~ 108 (248)
++.|..+|..+++.+-.... ........ ..+++..+++++.++.+..||..+++.+....+......... +
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 57889999989988876643 11111111 233566777778999999999999987766665322111100 0
Q ss_pred EEecCCCEEEEEe-CCcEEEEEc-cCCCCC----ceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCC--c--
Q psy16005 109 AWSPDNQRMISIV-ENGAKVSSL-PIDYEP----SSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEP--S-- 176 (248)
Q Consensus 109 ~~~~~~~~l~~~~-~~~~~i~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~--~-- 176 (248)
....++ .+.... .+|..+|.. ....+. ........+..++++..++.+..+| +|+.+...+..... .
T Consensus 81 v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 81 VGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred ccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 111222 222222 455566663 322111 1222223477888888899999999 78887777653322 1
Q ss_pred -------eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 177 -------SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 177 -------~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.-....++ .+++++.++.+.-+|+.+++..- ... ...+..+ ..+++..|+.++.++.+..||+++|+
T Consensus 160 ~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 160 SSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EEC-SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--Eec-CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 11122244 77777777754444999998542 212 2223331 45677788888799999999999985
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-09 Score=74.97 Aligned_cols=187 Identities=18% Similarity=0.312 Sum_probs=121.8
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCc---eeeeeeccCCC------------CCeeEEEEecCC---CEEEE
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE---HILKNEFHPIG------------GPIKDIAWSPDN---QRMIS 119 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~------------~~v~~~~~~~~~---~~l~~ 119 (248)
...|+++.|...|.+|++|...|.|.+|.-+... ......++.|. ..|..+.|..++ .+|++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999865433 11112334442 357788887654 35666
Q ss_pred EeCCcEEEEEccC-----------------------------------------------------CCCCceeEeCCCCC
Q psy16005 120 IVENGAKVSSLPI-----------------------------------------------------DYEPSSISLDHEHG 146 (248)
Q Consensus 120 ~~~~~~~i~~~~~-----------------------------------------------------~~~~~~~~~~~~~~ 146 (248)
+.+..+++|.+.. ...+.++.+..+.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 6677789998621 11234555666655
Q ss_pred EEEEEcCCCeEEEEECCceeeee------cc-----cCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCC------C
Q psy16005 147 LVAVGGADSKISIVENGAKVSSL------PI-----DYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLS------P 208 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~------~~-----~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~------~ 208 (248)
.+++ ..|=.|.+|+....-..+ ++ ..-+++..|+|.. ..+...+..|.|++-|++..... .
T Consensus 186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 5554 455677788733322221 11 2235778899844 46777788999999999843211 0
Q ss_pred cc---------cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 209 KA---------ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 209 ~~---------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.. ..+-...|..+.|+|+|+++++-+. .++++||++.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 00 0112356889999999999988754 5999999864
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-07 Score=79.53 Aligned_cols=186 Identities=17% Similarity=0.191 Sum_probs=130.2
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc-------
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL------- 130 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~------- 130 (248)
...|.++.|..+.+.++.+..+|.|.+-|..+....... .-...|.+++|+||++.++.....+..+...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 358999999999999999999999999988877643322 2357899999999999998887765433211
Q ss_pred --------------------------c----------------------CCCCCceeEeCCCCCEEEEE-----cCCCeE
Q psy16005 131 --------------------------P----------------------IDYEPSSISLDHEHGLVAVG-----GADSKI 157 (248)
Q Consensus 131 --------------------------~----------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~i 157 (248)
+ .+..-..+.|-.||+++++. ...+.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0 01122458899999999873 333789
Q ss_pred EEEECCceeeeec--ccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCC---CCCcccccCCcCeEEEEEcCCCcE
Q psy16005 158 SIVENGAKVSSLP--IDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKS---LSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
++||....+.... ..+--.+++|-|.|.++++-. .|+.|.+|.-+.-+ ...... .....|..++|+.++..
T Consensus 225 rV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 225 RVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCc
Confidence 9999554443332 233347899999999988753 45679999865422 211121 12334999999999999
Q ss_pred EEE---EcCCCeEEEEECCCC
Q psy16005 230 LVA---SDAHRKVVLYRVPDF 247 (248)
Q Consensus 230 l~~---~~~d~~i~vw~~~~~ 247 (248)
|+. ......|++|-+.+.
T Consensus 304 LAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeeecccccceEEEEEecCe
Confidence 887 444556999988764
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-07 Score=75.51 Aligned_cols=213 Identities=10% Similarity=0.125 Sum_probs=137.3
Q ss_pred CCCCEEEEeC--CcEEEEEecCCCceeeeee------c---------CCcceE-----EEEECcCCcEEEE-EccCCeEE
Q psy16005 27 PKGKNFLYTN--GNSVIIRNIENPAISDIYT------E---------HSCAVN-----VAKYSPSGFYIAS-GDISGKVR 83 (248)
Q Consensus 27 ~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~------~---------~~~~v~-----~~~~s~~~~~l~~-~~~dg~i~ 83 (248)
.||++|+.-. ...|...+++..+.-+.+. . +++.|. .+-++|||+.+.. .-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 4788888875 4555555665544332221 1 111122 2334456665532 33446788
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe---CCcEEEEEccCCCCCceeEeC--------CCCCEEEEEc
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV---ENGAKVSSLPIDYEPSSISLD--------HEHGLVAVGG 152 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~ 152 (248)
+.|.++.+........ +....++++|+|+++++.+ +.+..+-.+........+.++ ++|++...
T Consensus 219 vID~etmeV~~qV~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAETMEVAWQVMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECccceEEEEEEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--
Confidence 8888876654444443 3556789999999998886 444445444443333444443 45666555
Q ss_pred CCCeEEEEECCc-------eeeeecccCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCC------------CCcccc
Q psy16005 153 ADSKISIVENGA-------KVSSLPIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSL------------SPKAEL 212 (248)
Q Consensus 153 ~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~------------~~~~~~ 212 (248)
.++.|.++|... .+..++....+..+.++|||+++++++. +++|.++|+.+.+. ..+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve- 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE- 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-
Confidence 357899999443 5677788899999999999998887765 78999999987553 11111
Q ss_pred cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
-.......+|.++|....+.--|..|..|++.+
T Consensus 373 -vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 -LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 123345678999998777778899999999864
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=82.76 Aligned_cols=187 Identities=14% Similarity=0.194 Sum_probs=130.8
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
+..++.|+ ...+..+|+.+.+..+...-....|.-++. +++.+.+|...|+|.+-|.++.+.+ .++..|.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~i--ht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETI--HTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCcee--eeeeccccceee
Confidence 33455554 667788898888877766544445555544 6789999999999999999988854 788899998876
Q ss_pred EEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECC--ceeeeecccCCCceEEEcCCC-
Q psy16005 108 IAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENG--AKVSSLPIDYEPSSISLDHEH- 184 (248)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~s~~~- 184 (248)
+. -.|+.|++++...-+ ..-..|.-|++||.+ +.+..+..+..+.-+.|.|.-
T Consensus 223 fD--v~GNlLitCG~S~R~----------------------~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~ 278 (1118)
T KOG1275|consen 223 FD--VQGNLLITCGYSMRR----------------------YNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT 278 (1118)
T ss_pred ee--ccCCeEEEeeccccc----------------------ccccccchhhhhhhhhhhccCCcccccCchhhhhccccc
Confidence 54 478888888743210 001235567777733 334444455556667777743
Q ss_pred CEEEEEcCCCcEEEEEcCC---CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 185 GLVAVGGADSKVHIYELNN---KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
..+++++..|+..+-|..+ ...-..........+..+++|++++.|+.+..+|.|.+|.
T Consensus 279 t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 279 TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3788888899999999433 2221222223455599999999999999999999999996
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-07 Score=67.11 Aligned_cols=205 Identities=10% Similarity=-0.029 Sum_probs=130.1
Q ss_pred CEEEEeC-CcEEEEEecCCCceeee-eecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCee
Q psy16005 30 KNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106 (248)
Q Consensus 30 ~~l~~~~-~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (248)
.+|+.|+ .|...+|...+.+.... ...|...|+-+.=.. ..-.+..++.|.++++.+++.+... ....-..-...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~n 162 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQN 162 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeecccccee
Confidence 3566664 78999999886554332 223333332111111 1234667788999999988766532 22221123378
Q ss_pred EEEEecCCCEEEEEeCCc-EEEEEcc-------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEEC---Cceeeee
Q psy16005 107 DIAWSPDNQRMISIVENG-AKVSSLP-------------IDYEPSSISLDHEHGLVAVGGADSKISIVEN---GAKVSSL 169 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~-~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~ 169 (248)
++++++|++++++.++.. +-.|.++ ....-.+..|+.....+|++.+||.+.+||- +.+....
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 899999999999887543 3444433 2334456788888899999999999999992 3332222
Q ss_pred -----cccCCCceEEEcCCCC--EEEEEcCCCcEEEEEcCCCCCCCcccc------cCC-cCeEEEEEcCCCcEEEEEcC
Q psy16005 170 -----PIDYEPSSISLDHEHG--LVAVGGADSKVHIYELNNKSLSPKAEL------DHL-GPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 170 -----~~~~~~~~~~~s~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~-~~v~~~~~s~~~~~l~~~~~ 235 (248)
.+.+.+..+.|+|-|. +|...-.-+.+.+.|+++.+....... .|. ..|..-.|+.++..+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 2455678889998665 555555567899999998865433221 222 34777788888776666654
Q ss_pred C
Q psy16005 236 H 236 (248)
Q Consensus 236 d 236 (248)
+
T Consensus 323 ~ 323 (344)
T KOG4532|consen 323 L 323 (344)
T ss_pred h
Confidence 3
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-07 Score=70.11 Aligned_cols=207 Identities=14% Similarity=0.221 Sum_probs=134.3
Q ss_pred CCcEEEEeCCCCC--EEEEe------CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc-----------c
Q psy16005 18 GQPIVLGGDPKGK--NFLYT------NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-----------I 78 (248)
Q Consensus 18 ~~v~~~~~s~~~~--~l~~~------~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~ 78 (248)
..+....|+|.|+ .|++- ....+++|.+..+..+.+-......=..+.|.+.|++|..-- .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 4677888999643 34442 257899999987666554333333334688999888765421 1
Q ss_pred CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe-C--CcEEEEEccC-------CCCCceeEeCCCCCEE
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV-E--NGAKVSSLPI-------DYEPSSISLDHEHGLV 148 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--~~~~i~~~~~-------~~~~~~~~~~~~~~~~ 148 (248)
...+.++++...... ... .-.++|...+|.|.++.+++.+ . ..+.+++++. +..-..+.|+|.++++
T Consensus 254 esnLyl~~~~e~~i~--V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~i 330 (561)
T COG5354 254 ESNLYLLRITERSIP--VEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYI 330 (561)
T ss_pred cceEEEEeecccccc--eec-cccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEE
Confidence 246888888754422 222 4478999999999999888776 2 2235555543 3445678899999999
Q ss_pred EEEcCC---CeEEEEECCceeeee-cc-cCCCceEEEcCCCCEEEEEc------CCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 149 AVGGAD---SKISIVENGAKVSSL-PI-DYEPSSISLDHEHGLVAVGG------ADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 149 ~~~~~~---~~i~~~~~~~~~~~~-~~-~~~~~~~~~s~~~~~l~~~~------~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
+.++-+ |.+.+|+........ .. .....-+.|+||+.++.+.. .|..+.|||+...+.. .
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------e 401 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------E 401 (561)
T ss_pred EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---------h
Confidence 887654 678899933332222 22 22334567999999888764 3778999999765542 3
Q ss_pred eEEEEEcCCCcEEEEEcCC
Q psy16005 218 VTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d 236 (248)
.+.+.|.|.+++..+.+.+
T Consensus 402 l~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 402 LTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred hhhccccCCcccceeeccC
Confidence 4556666666665555443
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.3e-08 Score=72.52 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=131.6
Q ss_pred cccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.+...|..++|||..+ ++..++ ++.|.|.|+++...+..+..+ ..+++++|.-| .++|+.|...|.|.|||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4667899999999887 566666 999999999998888888777 78999999885 4678889999999999998765
Q ss_pred eeeeeeccC--CCCCeeEEEEecC-----CCEEEEEeCCcEEEEEccCC-------------CCCceeEeCCCCCEE-EE
Q psy16005 92 HILKNEFHP--IGGPIKDIAWSPD-----NQRMISIVENGAKVSSLPID-------------YEPSSISLDHEHGLV-AV 150 (248)
Q Consensus 92 ~~~~~~~~~--~~~~v~~~~~~~~-----~~~l~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~~~~~-~~ 150 (248)
... ..+.+ ...+|..++.-+- ..-++++.......|.+... +...++.+.+-.+.+ ++
T Consensus 270 ~~~-~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 270 GPL-MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred chH-hhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence 421 11111 1234444443321 12234444444455554321 122233333433333 33
Q ss_pred EcCCCe---EE---E---EECCceeeeec-cc--CC-----C-ceEEEcCCCCEEE-EEcCCCcEEEEEcCCCCCCCccc
Q psy16005 151 GGADSK---IS---I---VENGAKVSSLP-ID--YE-----P-SSISLDHEHGLVA-VGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 151 ~~~~~~---i~---~---~~~~~~~~~~~-~~--~~-----~-~~~~~s~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
.-.+.. ++ . .+.|..+.... .. .. - ..+.-.++..+++ ++...+.+.+||..+.+....+.
T Consensus 349 yRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~ 428 (463)
T KOG1645|consen 349 YRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA 428 (463)
T ss_pred ecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc
Confidence 222111 00 0 01222221111 00 00 0 1122234445444 45566789999999999876664
Q ss_pred ccCCcCeEEEEEcC-CC-cEEEEEcCCCeEEEEECCC
Q psy16005 212 LDHLGPVTDCSFSP-SN-EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 ~~~~~~v~~~~~s~-~~-~~l~~~~~d~~i~vw~~~~ 246 (248)
-..+|.+++... ++ .+|++- .|..++||..+.
T Consensus 429 --~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 429 --LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred --cCcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 447788877543 33 355555 466899987654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-06 Score=67.85 Aligned_cols=113 Identities=11% Similarity=0.173 Sum_probs=81.1
Q ss_pred ccCCCCCceeEeCC-CCCEEEEE----cCCCeE----EEEE-CCc-----eeeeecccCCCceEEEcCCCCEEEEEcCCC
Q psy16005 130 LPIDYEPSSISLDH-EHGLVAVG----GADSKI----SIVE-NGA-----KVSSLPIDYEPSSISLDHEHGLVAVGGADS 194 (248)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~~~~~~----~~~~~i----~~~~-~~~-----~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 194 (248)
++.+..+..+.|+. +...+.+. +.+|.+ .+|+ .+. .+..++.+..+.+++++|+...++.|+.||
T Consensus 202 irTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 202 IRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred EEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC
Confidence 34556666777765 33333332 233433 2355 222 234566788899999999999999999999
Q ss_pred cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 195 KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|.+||...+... .. ...-.++.++|+|+|..+++|+..|.+.+||+.
T Consensus 282 SiiLyD~~~~~t~--~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 282 SIILYDTTRGVTL--LA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred eEEEEEcCCCeee--ee-eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 9999999776432 11 344567899999999999999999999999974
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.3e-10 Score=91.26 Aligned_cols=184 Identities=9% Similarity=0.171 Sum_probs=132.6
Q ss_pred eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---EE
Q psy16005 50 ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---AK 126 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~ 126 (248)
..+.+..|+...+|++|+-+.+.|+.|+-.|.|+++++.+|... ....+|..+++.+.-+.||..+++.+... ..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--ccccccccccccccccCCcceeeeeccccCchHH
Confidence 34567788899999999999999999999999999999999854 67788999999999999998888776443 26
Q ss_pred EEEccCCC-------CCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeee-----cccCCCceEEEcCCCCEEEEEcC
Q psy16005 127 VSSLPIDY-------EPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSL-----PIDYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 127 i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~~ 192 (248)
+|++.... .-.++.|+.....-+.|.......+|| ++..+.++ ...+.-++..|+|+..+++ +
T Consensus 1171 LW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---n 1247 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---N 1247 (1516)
T ss_pred HhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---e
Confidence 78875322 234556665544445566656777888 55544442 2234457889999988776 4
Q ss_pred CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 193 DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|| .+||++..+.+..+. ..... -.-.|+|+|..++.-+. |||++|+
T Consensus 1248 dG--vLWDvR~~~aIh~FD-~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFD-QFTDY-GGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred Cc--eeeeeccHHHHhhhh-hheec-ccccccCCCceEEeech-----hhhhHHH
Confidence 55 589999886655543 22212 22368999988887764 7888765
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=74.65 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=92.6
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCce----eeeeecCCcceEEEEECcCCcEEEEE---ccCCeEEEEECCCC
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAI----SDIYTEHSCAVNVAKYSPSGFYIASG---DISGKVRIWDTVNK 90 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~ 90 (248)
.+..+..+|.++++|++. +....++++..... .... .-...-+++.|..+......+ +....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344566788899999886 55555665544322 1111 222333455555544444444 34455666665544
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeee
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSL 169 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (248)
.. ..+-+|-..+..++|+||+++++++..|+ +++-.++....+.+.+ +
T Consensus 143 ~~---~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc----------------------------l 191 (390)
T KOG3914|consen 143 RC---EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC----------------------------L 191 (390)
T ss_pred Cc---chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc----------------------------c
Confidence 32 45568899999999999998777766544 2333322211111111 1
Q ss_pred cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 170 PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 170 ~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
.|..-|..++.-++. .|++|+.|++|++||+.+++.+..
T Consensus 192 GH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 192 GHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcccc
Confidence 123335566666544 589999999999999999886543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-07 Score=70.59 Aligned_cols=211 Identities=10% Similarity=0.030 Sum_probs=118.8
Q ss_pred CEEEEe-CCcEEEEEecCCCceeeeeecCCcceEE-EEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCC------
Q psy16005 30 KNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNV-AKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI------ 101 (248)
Q Consensus 30 ~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------ 101 (248)
..++.+ .++.++.+|.++|+..-...... .+.+ ... .+..++.++.+|.+..+|.++++.+........
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 344455 48899999999999876654332 2221 112 244677788899999999999987765543211
Q ss_pred -CCCee---EEEE-ecCCCEEEEEeCCcEEEEEccCCCCC--------ceeEeCC--CCCEEEEEcCCCeEEEEE--CCc
Q psy16005 102 -GGPIK---DIAW-SPDNQRMISIVENGAKVSSLPIDYEP--------SSISLDH--EHGLVAVGGADSKISIVE--NGA 164 (248)
Q Consensus 102 -~~~v~---~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~i~~~~--~~~ 164 (248)
..++. .+-+ ..++...+.-..+|..+|..+..... ..+..+| .+..++.++.++.+..+| +++
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 11111 0111 11222222222344455654432111 0111122 245566677889999988 666
Q ss_pred eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 165 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 165 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.+...+.... ..+. ..+..+++++.+|.+..+|..+++..-...........+... .+.+|+.++.+|.+...|.
T Consensus 278 ~~W~~~~~~~-~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 278 IVWKREYGSV-NDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred EEEeecCCCc-cCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 6655443221 1222 245678888889999999999887542221111111222222 2456788888999999999
Q ss_pred CCCC
Q psy16005 245 PDFE 248 (248)
Q Consensus 245 ~~~~ 248 (248)
.+|+
T Consensus 353 ~tG~ 356 (394)
T PRK11138 353 EDGR 356 (394)
T ss_pred CCCC
Confidence 8875
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=88.80 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=104.0
Q ss_pred CCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCC
Q psy16005 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEP 136 (248)
Q Consensus 57 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 136 (248)
+-..|.++.=+|...+.+||+.||.|++|....++.+......+. ..++.+.|+.+|+.+.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~------------------ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFG------------------ 2267 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCcee------------------
Confidence 344566777777777888899999999998877776655444443 6677777776665444
Q ss_pred ceeEeCCCCCEEEEEcCCCeEEEEECC-ceeeeec-ccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCCCCccc
Q psy16005 137 SSISLDHEHGLVAVGGADSKISIVENG-AKVSSLP-IDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~ 211 (248)
.+..||.+.+|..+ +...... +......+.|-. ..+++++ .++.+.+||..-........
T Consensus 2268 -------------i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2268 -------------IVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred -------------eeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 44555666666633 1111111 222334444442 4556554 46789999975433322233
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|.+.++++++.|..+.|++|+.+|.|++||++.
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHH
Confidence 46999999999999999999999999999999864
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-06 Score=74.77 Aligned_cols=189 Identities=15% Similarity=0.190 Sum_probs=126.1
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC----CCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT----VNK 90 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~----~~~ 90 (248)
-.+.|.++.|..+++-++.+. +|.|.+-|.++..... ...-...|.+++||||++.++..+..+++.+-.- -..
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 346899999999888777765 8888888877654432 3334678999999999999998888877765432 111
Q ss_pred cee-----------------eeeeccC---------------------CCCCeeEEEEecCCCEEEEEe-----C-CcEE
Q psy16005 91 EHI-----------------LKNEFHP---------------------IGGPIKDIAWSPDNQRMISIV-----E-NGAK 126 (248)
Q Consensus 91 ~~~-----------------~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~-----~-~~~~ 126 (248)
+.+ ....+.+ ..+.=..+.|--||+++++.. + ..++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 000 0011111 011123589999999999853 2 4468
Q ss_pred EEEcc---------CCCCCceeEeCCCCCEEEEE---cCCCeEEEEE-CCceeee----ecccCC-CceEEEcCCCCEEE
Q psy16005 127 VSSLP---------IDYEPSSISLDHEHGLVAVG---GADSKISIVE-NGAKVSS----LPIDYE-PSSISLDHEHGLVA 188 (248)
Q Consensus 127 i~~~~---------~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~-~~~~~~~----~~~~~~-~~~~~~s~~~~~l~ 188 (248)
+|+-. ..+.-.+++|-|.|..+++- ..++.|.++. .|-.-.. .+.... +..++|+.++..|+
T Consensus 226 V~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 226 VYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred EecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 99865 12334688999999998874 3456788888 3322222 333333 78999999999998
Q ss_pred E---EcCCCcEEEEEcCCCC
Q psy16005 189 V---GGADSKVHIYELNNKS 205 (248)
Q Consensus 189 ~---~~~d~~v~i~d~~~~~ 205 (248)
+ ......|++|-..+..
T Consensus 306 v~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecccccceEEEEEecCeE
Confidence 8 4445559999887753
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=76.88 Aligned_cols=192 Identities=9% Similarity=0.141 Sum_probs=125.5
Q ss_pred cccccccccCCcEEEEeCCCC-----------C-EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc---CC-c
Q psy16005 9 FATLPRTQRGQPIVLGGDPKG-----------K-NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP---SG-F 71 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~-----------~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~ 71 (248)
+..++ .|...|+.+.|.|-. . .+|++. .|.|.+||...+..+..+..|.+++..++|-+ +. .
T Consensus 48 iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 48 IQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence 34443 367889999997731 1 344455 79999999999988888989999999999977 33 4
Q ss_pred EEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCcE-EEEE---------------ccCC-
Q psy16005 72 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENGA-KVSS---------------LPID- 133 (248)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~-~i~~---------------~~~~- 133 (248)
.|+.-.....+.+|+..+|+...++... .....|+.++| |.+.+...+..|. .+-+ +..+
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys--~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~ 204 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYS--HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH 204 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccC--CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence 5666667789999999999977655443 45667788888 5566555554443 2211 1111
Q ss_pred -----------------CCC---------ceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCC-CceEEEcCCC
Q psy16005 134 -----------------YEP---------SSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYE-PSSISLDHEH 184 (248)
Q Consensus 134 -----------------~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~-~~~~~~s~~~ 184 (248)
..+ -.++|+|.-+.++.......+.++| -...+...+.+.. ..-+.+-|++
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 000 1234566655555555566777777 3344444444332 3345555554
Q ss_pred --CEEEEEcCCCcEEEEEcCC
Q psy16005 185 --GLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 185 --~~l~~~~~d~~v~i~d~~~ 203 (248)
..|++...||.+.+|-.+.
T Consensus 285 ~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceEEEEecCCeEEEEEeec
Confidence 4899999999999997654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-09 Score=54.49 Aligned_cols=32 Identities=13% Similarity=0.422 Sum_probs=30.6
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 37999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.6e-07 Score=72.76 Aligned_cols=77 Identities=13% Similarity=0.285 Sum_probs=65.2
Q ss_pred EEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCcee-eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 128 SSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKV-SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
-.++.+..+.+.+++|+...++.|+.||.|.+||....+ ........++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 345677889999999999999999999999999944433 33456677899999999999999999999999998643
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=74.82 Aligned_cols=183 Identities=15% Similarity=0.228 Sum_probs=110.2
Q ss_pred CCcEEEEeCCCCCEEEEeC----C-cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEE-EccCCe--EEEEECCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN----G-NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISGK--VRIWDTVN 89 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~----~-~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~--i~iwd~~~ 89 (248)
..+..-+|+|++..++... . ..++++++++++....+. ..+.-...+|+|||+.|+. ...||. |.+.|+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 4455678999999887763 3 369999999887766553 3445567889999988765 456665 56667776
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeee
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSS 168 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ 168 (248)
+... .+....+.-..-.|+|||++++..++.+- .-.|.+++ .+.....
T Consensus 272 ~~~~---~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------------------------~p~I~~~~~~g~~~~r 320 (425)
T COG0823 272 KNLP---RLTNGFGINTSPSWSPDGSKIVFTSDRGG----------------------------RPQIYLYDLEGSQVTR 320 (425)
T ss_pred Ccce---ecccCCccccCccCCCCCCEEEEEeCCCC----------------------------CcceEEECCCCCceeE
Confidence 6632 23333333346789999999988765431 00222333 2222222
Q ss_pred ecccC-CCceEEEcCCCCEEEEEcC-CCc--EEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 169 LPIDY-EPSSISLDHEHGLVAVGGA-DSK--VHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 169 ~~~~~-~~~~~~~s~~~~~l~~~~~-d~~--v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+.... .-....|+|||++++..+. +|. |.+.|+.++.....+ ..........|.|+++.+...+
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceEEEec
Confidence 22211 1226789999998887764 344 677777666532222 2333344556777777665543
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-07 Score=74.39 Aligned_cols=183 Identities=21% Similarity=0.208 Sum_probs=118.1
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
..+.|++++ +++++.|. .|.+++.+.+. .. .+...|... ..+|.++++||.||+|.|-.+-+.+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456666665 67888887 89999998653 33 333355443 568999999999999999998888765444
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE---CCceee--eecc
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE---NGAKVS--SLPI 171 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~--~~~~ 171 (248)
.+ ..++.+++++|+-. ....+.+++|+..| +.++. .+.... .-..
T Consensus 110 df---~rpiksial~Pd~~--------------------------~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 110 DF---KRPIKSIALHPDFS--------------------------RQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred ec---CCcceeEEeccchh--------------------------hhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 44 47889999999710 01122344444444 44433 111111 1224
Q ss_pred cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC-----CcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH-----LGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.+++.++.|. |.++|-++.+| |++||..+++.+.....++ ..-...+.|.++.+ |+.|-. .+|+|..++
T Consensus 160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG-DSVKICSIK 233 (846)
T ss_pred ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC-CeEEEEEEe
Confidence 5667888887 77999998777 9999999887665544333 22345678877655 444433 367776665
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=78.92 Aligned_cols=189 Identities=15% Similarity=0.206 Sum_probs=119.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC-------CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN-------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
+|...|.+++--.+.+-+++++ |.+|++|.+.. ..+..+++.|+.+|.++.|-.+-+++++ .||-|.+||
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWD 810 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWD 810 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeec
Confidence 5677777776656666777776 99999999864 2245567799999999999998887776 478899999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEE-e-CCcEEEEEcc--------------C-CCCCceeEeCCCCCE
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISI-V-ENGAKVSSLP--------------I-DYEPSSISLDHEHGL 147 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~-~~~~~i~~~~--------------~-~~~~~~~~~~~~~~~ 147 (248)
.--++.+.........+.+..+.--+ +...++++ + +..+++++-+ . ....++++..+.|+.
T Consensus 811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~ 890 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK 890 (1034)
T ss_pred ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch
Confidence 87776543222222223333333333 33334433 2 2223444422 1 134578889999999
Q ss_pred EEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEE-EEcCCCCC
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHI-YELNNKSL 206 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i-~d~~~~~~ 206 (248)
++++-.+|.|.+.| +|+.+.... .......++ .|..+.++....|.++.+ |..-.+..
T Consensus 891 lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 891 LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 99999999999999 444443221 111111122 244456666667778887 76655543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-06 Score=59.65 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=109.1
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecC-CcceEEEEECcCCcEEEEEccCCeEEEEECCCCce-
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH- 92 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~- 92 (248)
...+..++|+|+.+.|++.. .+.|...+. +|+.++.+... .+....+++..++.++++.-.++.+.++++.....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 34599999999877666654 678888886 47777776533 35678999988888888777789999998843221
Q ss_pred -----eeeeec--c-CCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------------------CCCCceeEeC
Q psy16005 93 -----ILKNEF--H-PIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------------------DYEPSSISLD 142 (248)
Q Consensus 93 -----~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------------------~~~~~~~~~~ 142 (248)
.....+ . .++..+..++|+|.++.|+++-+.. ..++.++. -..+..++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 111122 1 2456789999999887777765443 45666543 1235677888
Q ss_pred CCC-CEEEEEcCCCeEEEEE-CCceeeeecccC----------CCceEEEcCCCCEEEEEcCCCcEEEE
Q psy16005 143 HEH-GLVAVGGADSKISIVE-NGAKVSSLPIDY----------EPSSISLDHEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 143 ~~~-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~----------~~~~~~~s~~~~~l~~~~~d~~v~i~ 199 (248)
|.. ++++....+..|..+| .|+.+..+.+.. .+..++++++|++.++ ++-+..+.|
T Consensus 180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 764 5677778888888899 677666665543 3678999999965555 455555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-06 Score=67.51 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=48.3
Q ss_pred CceEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEE---cCCCeEEEEECC
Q psy16005 175 PSSISLDHEHGLVAVGGA---DSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVAS---DAHRKVVLYRVP 245 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~---~~d~~i~vw~~~ 245 (248)
+...+|.|.|..+++-+. ..++.+|.+++......+.. -.....+.+.|+|.|++++.+ |..|.+.++|+.
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 456789999987776543 35799998884221111111 122456889999999999876 567899999976
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-05 Score=63.94 Aligned_cols=200 Identities=11% Similarity=0.083 Sum_probs=109.7
Q ss_pred EEEeCCCCCEEEEeCCc------------EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 22 VLGGDPKGKNFLYTNGN------------SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~------------~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.++.+|.|--+|...+. .|.+|+. .|+.+..+.-..+.+.++.|+.+.+ |+.-..||.++++|+..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCC
Confidence 45667777777766543 5899984 4666666654448999999998655 55557899999999863
Q ss_pred Cceeeeeecc--C-----CCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC-------CCCc-------------eeEe
Q psy16005 90 KEHILKNEFH--P-----IGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID-------YEPS-------------SISL 141 (248)
Q Consensus 90 ~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~-------~~~~-------------~~~~ 141 (248)
.. .+.+. . ....+....+..+|-.+++.. ..+ .+-+...+ ..+. ...+
T Consensus 111 ~~---~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 111 EF---QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN-NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred ce---eechhhhccccCcccccccccccCCCCEEEECCC-CeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 32 11111 0 011122222222332222211 111 11111100 0000 0122
Q ss_pred CCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEE
Q psy16005 142 DHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDC 221 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~ 221 (248)
+.+....+....++.+.+.+.... ..+....++..+++||+++++|.-..+|.+.+.+..-.+.......+-......+
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~-~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~ 265 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSF-KQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQM 265 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccc-ccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEE
Confidence 333334444444555554442221 1133345789999999999999999999999987665554444433334566777
Q ss_pred EEcCCCc
Q psy16005 222 SFSPSNE 228 (248)
Q Consensus 222 ~~s~~~~ 228 (248)
.|.-+..
T Consensus 266 ~WCG~da 272 (410)
T PF04841_consen 266 AWCGNDA 272 (410)
T ss_pred EEECCCc
Confidence 7776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.4e-07 Score=72.20 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=90.2
Q ss_pred cccCCcEEEEeCCC-------------CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcC-----CcEEEE
Q psy16005 15 TQRGQPIVLGGDPK-------------GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-----GFYIAS 75 (248)
Q Consensus 15 ~~~~~v~~~~~s~~-------------~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~ 75 (248)
.|+|.|....+.-+ |.++++|+ ||.|.|-.+.+.+....+ ....++.+++++|+ .+.+++
T Consensus 56 tH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~ 134 (846)
T KOG2066|consen 56 THRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVS 134 (846)
T ss_pred cccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheee
Confidence 46666665555444 99999998 999999999888877766 45678999999997 578999
Q ss_pred EccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeE
Q psy16005 76 GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSIS 140 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~ 140 (248)
|+..| +.++.-+=-+......+..-.++|.++.| .|++++-+++.|+++++...+..++.+.
T Consensus 135 GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 135 GGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIP 196 (846)
T ss_pred cCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccC
Confidence 99988 77765331111111234555789999999 4889999999999999987665554443
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=69.81 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=95.7
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCC
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQ 115 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 115 (248)
+..+.|+++..+....-..-...|.+++-+| ..+.++.|+.||.+-+||.+.... ....+..|+.+++.+.|+| ++.
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCch
Confidence 3556666654333221112233499999999 456778899999999999998743 4456778999999999999 577
Q ss_pred EEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeee-ecc----c---CCCceEEEcCCCCE
Q psy16005 116 RMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSS-LPI----D---YEPSSISLDHEHGL 186 (248)
Q Consensus 116 ~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~----~---~~~~~~~~s~~~~~ 186 (248)
.|++++++|. ..|+- .+..|..+.+...+..|=.+...+. +.. + ..+++ |.--|..
T Consensus 238 ~Lft~sedGslw~wda-------------s~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~ 302 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDA-------------STTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPC 302 (319)
T ss_pred heeEecCCCcEEEEcC-------------CCceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCce
Confidence 8889888874 44543 3344555555555666765444333 211 1 11232 3334778
Q ss_pred EEEEcCCCcEEEEE
Q psy16005 187 VAVGGADSKVHIYE 200 (248)
Q Consensus 187 l~~~~~d~~v~i~d 200 (248)
|++|+.-+.|++++
T Consensus 303 lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 303 LVCGTDAEAIYLTR 316 (319)
T ss_pred EEeccccceEEEec
Confidence 99999888888875
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=8e-09 Score=84.65 Aligned_cols=200 Identities=11% Similarity=0.101 Sum_probs=134.5
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC--eEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~ 91 (248)
.+....+|++|+-+.++|+.|. .|.|+++++.+|........|..+|+.+.-+.||..+++.+.-. ...+|++..-.
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 3567789999999999999998 99999999999999999999999999999999998887765433 47799986522
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEE-EEeCCcEEEEEccCCC--------------CCceeEeCCCCCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMI-SIVENGAKVSSLPIDY--------------EPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
. .+..+ ..-.++.|+...+.-+ .+..+...+|+++... .-....|+|...+++- ||
T Consensus 1179 ~-~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG- 1249 (1516)
T KOG1832|consen 1179 G-PRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG- 1249 (1516)
T ss_pred C-ccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc-
Confidence 1 22333 2346778887544333 3345667899976432 2345667777766652 33
Q ss_pred EEEEECC--ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 157 ISIVENG--AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 157 i~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
.+||.+ +.++.+..-..-..-.|+|.|..++.-+ .|||+++.+....... -.-..+.|+..|..++.
T Consensus 1250 -vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~---Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1250 -VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS---LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred -eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcc---ccceEEEeccCccchhh
Confidence 357733 2333332111122346899999888866 4899999876544321 12255677777765544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-06 Score=65.76 Aligned_cols=209 Identities=12% Similarity=0.118 Sum_probs=113.8
Q ss_pred CCEEEEeCCcEEEEEecCCCceeeeeecCCcceE-EEEECc--CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCC--
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVN-VAKYSP--SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-- 103 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~-~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 103 (248)
+..++...++.++.+|..+|+..-.+........ ...-+| .+..++.++.+|.+..+|..+++......+.....
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence 3333334488999999999988766543211110 000122 23356777888999999999887654433221100
Q ss_pred C---eeEEEEec--CCCEEEEEe----------CCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCcee
Q psy16005 104 P---IKDIAWSP--DNQRMISIV----------ENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKV 166 (248)
Q Consensus 104 ~---v~~~~~~~--~~~~l~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~ 166 (248)
. ...+.-+| .+..++.++ .+|..+|..+..... .+ ...+..+..++.++.+..+| +++.+
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~--~~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN-DF--AVDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc-Cc--EEECCEEEEEcCCCeEEEEECCCCcEE
Confidence 0 00011111 122333333 233455654432211 11 12455677778889999988 55555
Q ss_pred eeecc-c-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 167 SSLPI-D-YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 167 ~~~~~-~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
..... . ....+..+ .+..+++++.+|.++.+|..+++.+...............+ .+..|+.++.||.++.+++
T Consensus 318 W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 43321 1 11122222 24578888999999999999998755443222221222222 2447888899999998875
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-06 Score=63.68 Aligned_cols=216 Identities=15% Similarity=0.210 Sum_probs=117.9
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecC-----------------CcceEEEEECcCCcEEEEEccC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH-----------------SCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~d 79 (248)
...+....|||+|+.++...++.|++++..+++..+....- -+.-.++.||||+++||....|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 46778899999999999999999999998777544322211 0123578899999998876432
Q ss_pred C------------------------------------eEEEEECCCCceeeeee---ccCCCCCeeEEEEecCCCEEEEE
Q psy16005 80 G------------------------------------KVRIWDTVNKEHILKNE---FHPIGGPIKDIAWSPDNQRMISI 120 (248)
Q Consensus 80 g------------------------------------~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~ 120 (248)
. .+.++|+.+++...... .......+..+.|.++++.|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 1 14445555554321010 11234567889999999844443
Q ss_pred e--CCc--EEE--EEccCC-----------C---CCceeEeC-CCCC-EEEEEcCCCe--EEEEE-CCceeeeec-ccCC
Q psy16005 121 V--ENG--AKV--SSLPID-----------Y---EPSSISLD-HEHG-LVAVGGADSK--ISIVE-NGAKVSSLP-IDYE 174 (248)
Q Consensus 121 ~--~~~--~~i--~~~~~~-----------~---~~~~~~~~-~~~~-~~~~~~~~~~--i~~~~-~~~~~~~~~-~~~~ 174 (248)
- ++. ..+ .+.... . ......+. +++. ++.....+|- |++++ .+.....+. ....
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~ 281 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWE 281 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCcee
Confidence 2 222 222 232211 1 11233333 4544 4444556664 44455 333334443 4555
Q ss_pred Cc-eEEEcCCCCEEE-EEcCC----CcEEEEEcC-CCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 175 PS-SISLDHEHGLVA-VGGAD----SKVHIYELN-NKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 175 ~~-~~~~s~~~~~l~-~~~~d----~~v~i~d~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+. .+.++++++.|. ++..+ ..|+..++. .+... .+. ...+.-..+.|||++++++-..
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~-~LT-~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK-CLT-CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE-ESS-TTSSTTEEEEE-TTSSEEEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE-ecc-CCCCCceEEEECCCCCEEEEEE
Confidence 63 467888877544 45442 346666666 44432 222 2222226899999999887553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-05 Score=58.70 Aligned_cols=221 Identities=13% Similarity=0.111 Sum_probs=127.1
Q ss_pred EEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecCCc-------ceEEEEECcCCcEEEEEc--cCCe
Q psy16005 22 VLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEHSC-------AVNVAKYSPSGFYIASGD--ISGK 81 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~--~dg~ 81 (248)
.+..+||++.+++++ ...|.+||..+......+.-... ....++++.|+++++... -.-+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 466899999988752 13789999999876664432211 123467888999888754 3457
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCC----------------ceeEeCCCC
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEP----------------SSISLDHEH 145 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~~ 145 (248)
|.|-|+..++.+.....++ +..+--+++..+...|+++......+...+.+ ..-.+...+
T Consensus 120 VtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 9999999888664444332 22222222222333333333333333322111 111223344
Q ss_pred CEEEEEcCCCeEEEEE-CCceee---eecc-----------cCCCceEEEcCCCCEEEEEcC---CC-------cEEEEE
Q psy16005 146 GLVAVGGADSKISIVE-NGAKVS---SLPI-----------DYEPSSISLDHEHGLVAVGGA---DS-------KVHIYE 200 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~-~~~~~~---~~~~-----------~~~~~~~~~s~~~~~l~~~~~---d~-------~v~i~d 200 (248)
..++.-+.+|.|+-.| .+.... .... +..-.-+++++....|.+--. ++ .|.+||
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 4555567888888877 332211 1111 122355788876655554321 22 488889
Q ss_pred cCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEE-cCCCeEEEEECCCCC
Q psy16005 201 LNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVAS-DAHRKVVLYRVPDFE 248 (248)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~d~~i~vw~~~~~~ 248 (248)
+.+++.+.++..+ .++.+++.+.+.+ +|++. ..++.+.+||..+|+
T Consensus 276 ~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 276 LKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 9999988777644 3578999999876 66554 457999999999885
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=71.01 Aligned_cols=192 Identities=15% Similarity=0.093 Sum_probs=134.0
Q ss_pred cCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-CceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-Cc-EEEEEcc-
Q psy16005 56 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-NG-AKVSSLP- 131 (248)
Q Consensus 56 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~-~~i~~~~- 131 (248)
-|.+.|+.+..+ -.+++.+++.||.++.|--.. ........+..|...+.+++.+.++..+.+.++ +. .+++++.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777776554 457899999999999998654 222233556678889999999999998888765 44 5777753
Q ss_pred --------CCCCCceeEeCC-CC---CEEE-EEcCCCeEEEEECCc----eeeee-cccCCCceEEEcCCCCEEEEEcCC
Q psy16005 132 --------IDYEPSSISLDH-EH---GLVA-VGGADSKISIVENGA----KVSSL-PIDYEPSSISLDHEHGLVAVGGAD 193 (248)
Q Consensus 132 --------~~~~~~~~~~~~-~~---~~~~-~~~~~~~i~~~~~~~----~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d 193 (248)
....+..+.|.. .| ..++ ....++.+.++|... ....- -+..++.++.++|-+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 233344444432 22 1333 344678899999322 12222 245567889999999999999999
Q ss_pred CcEEEEEcCC-CCCCCc---cc----------ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 194 SKVHIYELNN-KSLSPK---AE----------LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 194 ~~v~i~d~~~-~~~~~~---~~----------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|.|.-|.... .+.+.. +. ........++.|+|++..+.+.+.|.+|+++++.+|+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 9999999873 111110 00 0234568899999999999999999999999998875
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=72.54 Aligned_cols=169 Identities=13% Similarity=0.139 Sum_probs=107.7
Q ss_pred EeCCC--CCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce--eeeeecc
Q psy16005 24 GGDPK--GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--ILKNEFH 99 (248)
Q Consensus 24 ~~s~~--~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~ 99 (248)
+|+-+ |-.+.+|.+..+.+-|++++.... + ..++.|.++.|...++++..|..+|.|...|++.+.. ......-
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc-c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 55543 334445558889999998875443 3 3677899999999889999999999999999986521 0112222
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-----eeeeecccCC
Q psy16005 100 PIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA-----KVSSLPIDYE 174 (248)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~ 174 (248)
.|...|+++..-. -+++.|.+.+.+|+|++||.+. .++.++.+..
T Consensus 296 yh~Ssvtslq~Lq------------------------------~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN 345 (425)
T KOG2695|consen 296 YHDSSVTSLQILQ------------------------------FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN 345 (425)
T ss_pred EcCcchhhhhhhc------------------------------cccceEeeccCcCceeEeeehhhhcccceeeeecccc
Confidence 3556666665443 1233455566777788887221 2333332211
Q ss_pred ---CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc---CCcCeEEEEEc
Q psy16005 175 ---PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFS 224 (248)
Q Consensus 175 ---~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~v~~~~~s 224 (248)
..-+-+.+....+++++.|...+||.++.+......... ....+.+++|.
T Consensus 346 ~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 346 LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 122344566678888999999999999999876655433 22345566664
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-08 Score=80.25 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=127.2
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC---CEEEEEeCCcEEEEEc----
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN---QRMISIVENGAKVSSL---- 130 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~i~~~---- 130 (248)
.+.+.++..+|.|+-++.++.-|. .+.|+...-........-..-.+-...|+|.. ..+++.+.....+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 456788999999999999988774 45666543322111111112234555666532 2344444444555554
Q ss_pred ---------cCCCCCceeEeCCCCC-EEEEEcCCCeEEEEECCceeeee----cccCCCceEEEcCCCCEEEEEcCCCcE
Q psy16005 131 ---------PIDYEPSSISLDHEHG-LVAVGGADSKISIVENGAKVSSL----PIDYEPSSISLDHEHGLVAVGGADSKV 196 (248)
Q Consensus 131 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d~~v 196 (248)
.+...++.+.|+|+.. .+++++.|-.+..||.......+ ........++|+.....+.+.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 3456678888988765 78899999999999966543332 234456778998755555666667789
Q ss_pred EEEEcCCCCCCCcccccCCcCeEEEEEcCC-CcEEEEEcCCCeEEEEECCC
Q psy16005 197 HIYELNNKSLSPKAELDHLGPVTDCSFSPS-NEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~ 246 (248)
++||.+.+..+.....+|...|..+.|..- ...+.+.+.|+++++||.+.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 999999988766666678888888888653 24577888999999999753
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-06 Score=68.99 Aligned_cols=174 Identities=13% Similarity=0.201 Sum_probs=103.2
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc---cC-CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD---IS-GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (248)
.+.+-|.+ +...+.+......+...+|+|+++.++..+ .. ..+.++++.+++......+.+ .-...+|+|||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspDG 249 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPDG 249 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCCC
Confidence 44444433 444455555566778889999987765442 22 468999999887654444443 34456899999
Q ss_pred CEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCC-CceEEEcCCCCEEEEEcC
Q psy16005 115 QRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYE-PSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 115 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~-~~~~~~s~~~~~l~~~~~ 192 (248)
+.|+.+.... ..-.|+++| .++.+..+..... -..-.|+|||++++..+.
T Consensus 250 ~~l~f~~~rd----------------------------g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd 301 (425)
T COG0823 250 SKLAFSSSRD----------------------------GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSD 301 (425)
T ss_pred CEEEEEECCC----------------------------CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeC
Confidence 8887665321 111234444 2222333332222 236689999998887654
Q ss_pred -CC--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC-CCe--EEEEECCC
Q psy16005 193 -DS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA-HRK--VVLYRVPD 246 (248)
Q Consensus 193 -d~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--i~vw~~~~ 246 (248)
.| .|.+++.+......... .- ..-....|+|||++|+..+. +|. |.+.++.+
T Consensus 302 r~G~p~I~~~~~~g~~~~riT~-~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 302 RGGRPQIYLYDLEGSQVTRLTF-SG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCcceEEECCCCCceeEeec-cC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 34 47777877776532222 22 22227789999999987764 344 55555543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-06 Score=68.08 Aligned_cols=171 Identities=9% Similarity=0.057 Sum_probs=108.6
Q ss_pred eCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC----CeEEEEECCCCceeeeeec
Q psy16005 25 GDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 25 ~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~ 98 (248)
++|||+.+...+ .+.+.+.|.++.+...++.- .+....++++|+|+++++.+.+ .++..-+..+......+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 456776554433 56778888888777666643 2345678899999999887632 2343443333222211111
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCcE--------------EEEEccCCCCCceeEeCCCCCEEEEEc-CCCeEEEEECC
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENGA--------------KVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKISIVENG 163 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~~--------------~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 163 (248)
.. + -++.++|++.... .+.+ .+..+..+..+..+.++|||+++++++ .+..+.++|..
T Consensus 279 ~~----i--ea~vkdGK~~~V~-gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 AR----I--EEAVKAGKFKTIG-GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred HH----H--HHhhhCCCEEEEC-CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 10 0 0223345443331 2222 445556677889999999999877665 58899999843
Q ss_pred c--------------eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 164 A--------------KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 164 ~--------------~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
+ ...+.+....+...+|+++|....+-.-|.+|..||+..
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3 234445566678899999998777778899999999876
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-06 Score=69.46 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=115.9
Q ss_pred EEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcc-eEEEEECcCCcEEEEEccCC-----eEEEEECCCCce---
Q psy16005 23 LGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCA-VNVAKYSPSGFYIASGDISG-----KVRIWDTVNKEH--- 92 (248)
Q Consensus 23 ~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~--- 92 (248)
-+|++.+..++.|+ +|.|.+.+ ...+..+.++.+... |..+....+.++|++-+.|+ .++||+++.-+.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 34678888888887 89888887 444555677777666 44443333446777766654 589999875321
Q ss_pred -eee--eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE------CC
Q psy16005 93 -ILK--NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE------NG 163 (248)
Q Consensus 93 -~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~ 163 (248)
... ..+.++.. |. ...+...++.+.+-+.+++|-.+|.|..+. .+
T Consensus 108 P~c~~~~ri~~~~n--------p~------------------~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKN--------PT------------------NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred cceeeeeeeeccCC--------CC------------------CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 000 01111000 00 112233344444445666677777777764 11
Q ss_pred c-eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 164 A-KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 164 ~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
. .........+++.+++..+++.++.......|.+|.+....+.......|...+.|..|++....+++++ +..+.+|
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY 240 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFY 240 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEE
Confidence 1 1222345667899999888886333334457999999855533333445778899999988766455554 3477777
Q ss_pred ECC
Q psy16005 243 RVP 245 (248)
Q Consensus 243 ~~~ 245 (248)
+.+
T Consensus 241 ~sd 243 (933)
T KOG2114|consen 241 DSD 243 (933)
T ss_pred cCC
Confidence 764
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-05 Score=60.46 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=117.2
Q ss_pred EEEeCCCCCEEEEeC--C----cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc-----------CCeEEE
Q psy16005 22 VLGGDPKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-----------SGKVRI 84 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg~i~i 84 (248)
...+||||+++|.+- + ..++++|+++++.+...-. ......+.|.++++.|+.... ...|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 578999999999872 2 3799999999977653211 112234999999877665432 224888
Q ss_pred EECCCCceeeeeeccCCCCC--eeEEEEecCCCEEEEEeCCc---EEEEEccCCCC------CceeEeCCCCCEEEEEcC
Q psy16005 85 WDTVNKEHILKNEFHPIGGP--IKDIAWSPDNQRMISIVENG---AKVSSLPIDYE------PSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~---~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~ 153 (248)
|.+.+........+...... ...+..++|+++++.....+ ..+|-++.... ...+.-..++....+...
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 286 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH 286 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence 88877654322333332222 56788999999988654322 45666655432 223322222332222222
Q ss_pred CCeEEE-------------EECCce-----e-eeecccCCCceEEEcCCCCEEEEEc-CCC--cEEEEEcC-CCCCCCcc
Q psy16005 154 DSKISI-------------VENGAK-----V-SSLPIDYEPSSISLDHEHGLVAVGG-ADS--KVHIYELN-NKSLSPKA 210 (248)
Q Consensus 154 ~~~i~~-------------~~~~~~-----~-~~~~~~~~~~~~~~s~~~~~l~~~~-~d~--~v~i~d~~-~~~~~~~~ 210 (248)
.+.+.+ .+.... . ..++......-..+...+.+|+... .++ .|+++++. +... ...
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~-~~~ 365 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES-REI 365 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE-EEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE-eee
Confidence 333333 231111 1 1111112112222333445555443 333 58899998 4333 222
Q ss_pred cccCCcCeEEEEEcCCCcEEEE-Ec---CCCeEEEEECCCCC
Q psy16005 211 ELDHLGPVTDCSFSPSNEYLVA-SD---AHRKVVLYRVPDFE 248 (248)
Q Consensus 211 ~~~~~~~v~~~~~s~~~~~l~~-~~---~d~~i~vw~~~~~~ 248 (248)
...-.+.|..+...+++..+.. .+ .-+++..||+.+++
T Consensus 366 ~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 366 PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 2233455677766676664433 22 23788889988875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=69.11 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=80.1
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE-------CCceeeeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE-------NGAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
.+..+.|...++++..|..+|.|..+| .+.+.+.+.++..++++..-. ++.+|++.+.+|.|.+||++--+.
T Consensus 254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 344445555566777777788888777 234566777888888887665 678999999999999999987665
Q ss_pred ---CCcccccCCcC--eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 207 ---SPKAELDHLGP--VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 207 ---~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+.... +|-.. -.-+-..+....+++++.|...+||.+++|
T Consensus 334 ~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 334 KKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred ccceeeee-cccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 33333 45322 122334566778999999999999999876
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-06 Score=66.38 Aligned_cols=215 Identities=16% Similarity=0.121 Sum_probs=135.6
Q ss_pred cccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeee--cCCcceEEEEECcC-C-cEEEE-EccCCeEEEEEC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPS-G-FYIAS-GDISGKVRIWDT 87 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~~-~-~~l~~-~~~dg~i~iwd~ 87 (248)
.|.+.+.+++.+-+|..+.+.+ |..++++|+++-..+.-++ ...+.+.. ..+|. . ..++. .-.+|.+.++|-
T Consensus 51 aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~ 129 (558)
T KOG0882|consen 51 AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDG 129 (558)
T ss_pred HHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECC
Confidence 4677888899999998888854 7899999988765543222 22333222 22332 1 13333 346789999998
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCC--CCCceeEeCCCCCEEEEEcCCCeEEEEECCc
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPID--YEPSSISLDHEHGLVAVGGADSKISIVENGA 164 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (248)
....+.....-.-|..+|..+.+++.+..+++....|. ..|....+ .+-..+.|.......
T Consensus 130 ~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd---------------- 193 (558)
T KOG0882|consen 130 FGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD---------------- 193 (558)
T ss_pred cCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccch----------------
Confidence 76654443444568899999999999888887776664 66655421 111122222211110
Q ss_pred eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-------------------------------c
Q psy16005 165 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-------------------------------D 213 (248)
Q Consensus 165 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-------------------------------~ 213 (248)
..........+.++.++|++..+.+-+.|..|++++.++++....+.. .
T Consensus 194 Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek 273 (558)
T KOG0882|consen 194 LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEK 273 (558)
T ss_pred hhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhh
Confidence 011112345678999999999999999999999999998865432110 1
Q ss_pred CC-cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 214 HL-GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 214 ~~-~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|. ..-+.+.|...|++|+.++-= -|++.++.+.
T Consensus 274 ~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn 307 (558)
T KOG0882|consen 274 HGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN 307 (558)
T ss_pred hcCcccceeEEcCCCCEEEeecce-eEEEEEeecC
Confidence 21 233567788889999888654 3667776654
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-07 Score=75.66 Aligned_cols=139 Identities=14% Similarity=0.211 Sum_probs=97.9
Q ss_pred CCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---------CeEEEEECCCCceeeee
Q psy16005 27 PKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---------GKVRIWDTVNKEHILKN 96 (248)
Q Consensus 27 ~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~ 96 (248)
.+++++++|. .|+|.+-|..+.+.++++..|.+.|.++.. .|+.|++++.. .-|+|||++.-+.+...
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 4678888887 899999999999999999999999987765 68899998754 45899999987755333
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE---CCce----eeee
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE---NGAK----VSSL 169 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~----~~~~ 169 (248)
.++ .+ ..-+.|.|.- ...+++++..|...+.| .+.. ....
T Consensus 263 ~~~--~~-P~flrf~Psl------------------------------~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~ 309 (1118)
T KOG1275|consen 263 QFP--YG-PQFLRFHPSL------------------------------TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN 309 (1118)
T ss_pred ccc--cC-chhhhhcccc------------------------------cceEEEEecccceeeccccccCCCccceeEEc
Confidence 332 22 2445566632 12344455566666655 1111 1222
Q ss_pred cccCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 170 PIDYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 170 ~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
+....+..+.+|+++..++.|..+|.|.+|-
T Consensus 310 p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 310 PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2334467888899999999999999999997
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-05 Score=59.59 Aligned_cols=194 Identities=14% Similarity=0.199 Sum_probs=129.8
Q ss_pred CcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc---CCeEEEEECCCCcee
Q psy16005 19 QPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEHI 93 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~ 93 (248)
....++.++.+..++... ++.|.+.|..+........-- .....++++|+++.++.+.. ++++.+.|..++...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345788889988666654 789999998777666655322 25678999999988877655 688999998887765
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceee-----
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVS----- 167 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~----- 167 (248)
.. ...+ ..+ ..++++|+|+.++... ..++.+.+.| .+..+.
T Consensus 154 ~~-~~vG-~~P-~~~a~~p~g~~vyv~~------------------------------~~~~~v~vi~~~~~~v~~~~~~ 200 (381)
T COG3391 154 AT-IPVG-NTP-TGVAVDPDGNKVYVTN------------------------------SDDNTVSVIDTSGNSVVRGSVG 200 (381)
T ss_pred EE-EecC-CCc-ceEEECCCCCeEEEEe------------------------------cCCCeEEEEeCCCcceeccccc
Confidence 43 2222 223 7788888887766544 2334444444 111111
Q ss_pred -eecccCCCceEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCccc-ccCCcCeEEEEEcCCCcEEEEEc-CCCeEEE
Q psy16005 168 -SLPIDYEPSSISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAE-LDHLGPVTDCSFSPSNEYLVASD-AHRKVVL 241 (248)
Q Consensus 168 -~~~~~~~~~~~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~v 241 (248)
.......+..+.++|+|..+.+.... +.+...|..++....... .+.. ....+..+|+|+++.... ..+.+.+
T Consensus 201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 23445567889999999977766544 589999998877644311 1222 456789999999888874 4478888
Q ss_pred EECCCC
Q psy16005 242 YRVPDF 247 (248)
Q Consensus 242 w~~~~~ 247 (248)
-|..+.
T Consensus 280 id~~~~ 285 (381)
T COG3391 280 IDGATD 285 (381)
T ss_pred EeCCCC
Confidence 776653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=9e-06 Score=59.50 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=97.7
Q ss_pred CCCEEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee-eccCCCC-C
Q psy16005 28 KGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN-EFHPIGG-P 104 (248)
Q Consensus 28 ~~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~-~ 104 (248)
++..++++ .++.++.||..+|+....+.. ...+..... .++..++.++.++.+..+|..+++.+... ....... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 44555555 699999999999998776654 222211112 23455666678889999999999977653 2221111 1
Q ss_pred eeEEEEecCCCEEEEEe----------CCcEEEEEccCCCCCc-----------eeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 105 IKDIAWSPDNQRMISIV----------ENGAKVSSLPIDYEPS-----------SISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 105 v~~~~~~~~~~~l~~~~----------~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
........++..++++. .+|..+|......... .-....++ .+..+..++.+..+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC
Confidence 11122222244444444 3455667665533221 11112234 666666666543347
Q ss_pred CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 162 NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
+++.+.... ...... ...+++..+++++.++.|..||+++++.
T Consensus 192 tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 192 TGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 454443322 222222 1456677888888999999999999875
|
... |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-05 Score=53.80 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=48.6
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
|++++.|. .+.+++.+..+|.+...+.....-=......+++..+..|+.|++.+..|.++...+.+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 44555554 78899999999987776654322212344567899999999999999999988776544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.2e-05 Score=60.72 Aligned_cols=208 Identities=14% Similarity=0.062 Sum_probs=113.7
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
-.+..+.++|+|++++.+++|...++.....+... .+.-....|.++++ +|+-....+|.|+.--+.+......
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence 34678999999999999999999999843332221 23345678988555 6666668899997432222211122
Q ss_pred ccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC-------CC-CceeEeCCCCCEEEEEcCCCeEEEEE-CCc----
Q psy16005 98 FHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID-------YE-PSSISLDHEHGLVAVGGADSKISIVE-NGA---- 164 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~---- 164 (248)
++ ..+..+-. |..|...+.+.+.+||+... .. +..+.|++++++++..+.+ .+.+++ ..+
T Consensus 107 ~~---~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 107 LP---FSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA 179 (443)
T ss_dssp -S---S-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred CC---cccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence 22 22333332 88888888888899988643 22 5788999999999988765 566655 222
Q ss_pred --------eeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 165 --------KVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 165 --------~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
....+. ....+.+.+|..+ .++-.+.. .++- +-+|+.-... .-..++.=+...|....++....
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~--~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA--HLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE--E-SS--EEEEEETTTTEEEEE-T
T ss_pred ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE--EcCCceEEEEEEccCCEEEEEEC
Confidence 222222 2566788888766 44444434 5555 4444432111 12446677778887788888989
Q ss_pred CCeEEEEECC
Q psy16005 236 HRKVVLYRVP 245 (248)
Q Consensus 236 d~~i~vw~~~ 245 (248)
|+.+..+.++
T Consensus 253 ~~~v~~~~ld 262 (443)
T PF04053_consen 253 DGNVISYELD 262 (443)
T ss_dssp T--EEEEE--
T ss_pred CCCEEEEEEC
Confidence 9888887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.1e-06 Score=65.33 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCcEEEEEcc-----CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceee--eeccc
Q psy16005 100 PIGGPIKDIAWSPDNQRMISIVENGAKVSSLP-----IDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVS--SLPID 172 (248)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~ 172 (248)
.....+..+.++|+|+.+++++++...++.-. ..+......|.+ .+.+|+-...+.|.++..-+... .+..+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~ 108 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKLP 108 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----S
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcCC
Confidence 34456789999999999999988888877732 123456678888 44566666688899976333222 44444
Q ss_pred CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 173 YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
..+..+-. |.+|...+.+ .|.+||..+++.+.... .. +|..+.|+++|++++..+.+ .+.+++.
T Consensus 109 ~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~--v~-~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID--VS-AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe--cC-CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 33333332 7777777654 79999999998876664 22 48999999999999988765 6666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.7e-05 Score=60.12 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=83.1
Q ss_pred cccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
+.-+...+.--+++..+++++.|+ -|.+++|+-..++....-. +-.+.+..+..|++..++|.|+..|.|.++.+..+
T Consensus 29 ~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 29 PGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred cccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 344555666677788899999997 7999999976665433221 24455667778998899999999999999988764
Q ss_pred ceeeeee----ccCCCCCeeEEEEecCCCEEEEEeCCcE
Q psy16005 91 EHILKNE----FHPIGGPIKDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 91 ~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 125 (248)
....... -..|+..|++++|++++..+++|...|.
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCce
Confidence 3221111 1236789999999999999999987774
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00016 Score=58.84 Aligned_cols=213 Identities=11% Similarity=0.120 Sum_probs=117.0
Q ss_pred CEEEEe-CCcEEEEEecCCCceeeeeecCCcc--eEEEEECc--CCcEEEEEc---------cCCeEEEEECCCCceeee
Q psy16005 30 KNFLYT-NGNSVIIRNIENPAISDIYTEHSCA--VNVAKYSP--SGFYIASGD---------ISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 30 ~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~~~~---------~dg~i~iwd~~~~~~~~~ 95 (248)
..++.+ .++.|+-+|.++++..-.+...... -..+.-+| .+..++.++ .+|.+..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 445555 4899999999999987665432221 01111222 224455554 367899999999987766
Q ss_pred eeccCCC------------------CCe-eEEEEecCCCEEEEEe----------------------------CCcEEEE
Q psy16005 96 NEFHPIG------------------GPI-KDIAWSPDNQRMISIV----------------------------ENGAKVS 128 (248)
Q Consensus 96 ~~~~~~~------------------~~v-~~~~~~~~~~~l~~~~----------------------------~~~~~i~ 128 (248)
....... ..+ ...++++.+..++.+. .+|..+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 5542110 000 1233333344444443 2344566
Q ss_pred EccCCCC-------CceeEeC----CCCC---EEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEE--
Q psy16005 129 SLPIDYE-------PSSISLD----HEHG---LVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVG-- 190 (248)
Q Consensus 129 ~~~~~~~-------~~~~~~~----~~~~---~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-- 190 (248)
..+.... .....+. -++. .++.++.+|.+..+| +++.+...+... ..++.+| ..++++
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~ 346 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAF 346 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccc
Confidence 6543211 0000111 1232 577788899999998 777776654321 1233444 223332
Q ss_pred ----------------cCCCcEEEEEcCCCCCCCccccc-CC------cCe--EEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 191 ----------------GADSKVHIYELNNKSLSPKAELD-HL------GPV--TDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 191 ----------------~~d~~v~i~d~~~~~~~~~~~~~-~~------~~v--~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..+|.+.-+|+.+++.+-....+ +. .+. ..+. -.+..|+.++.||.++.+|.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECC
Confidence 23577888898888765433322 00 111 1122 245788888999999999999
Q ss_pred CCC
Q psy16005 246 DFE 248 (248)
Q Consensus 246 ~~~ 248 (248)
+|+
T Consensus 425 tG~ 427 (488)
T cd00216 425 TGK 427 (488)
T ss_pred CCc
Confidence 886
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=75.32 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=84.4
Q ss_pred EeCCCCCEEEEE----cCCCeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC
Q psy16005 140 SLDHEHGLVAVG----GADSKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH 214 (248)
Q Consensus 140 ~~~~~~~~~~~~----~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 214 (248)
+|+|...+++++ ...|.+.||- +|++.+....+..+++++|+|..-.|+.|-+-|.+.+|...+.+... ....|
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht-v~~th 100 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT-VVETH 100 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee-eccCC
Confidence 344444444443 2457788875 88887777778888999999998899999999999999988776643 33379
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..+|..+.|||+|..|+++..-|.+.+|.+.
T Consensus 101 ~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 101 PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999999999999999999999999999875
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.9e-08 Score=76.89 Aligned_cols=186 Identities=13% Similarity=0.193 Sum_probs=122.8
Q ss_pred cceEEEEECcC--CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEe-----CCcEEEEEc
Q psy16005 59 CAVNVAKYSPS--GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIV-----ENGAKVSSL 130 (248)
Q Consensus 59 ~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----~~~~~i~~~ 130 (248)
..+.|+++.-+ ...++.|..+|.|.+-.++...--.....+++..++++++|++ |.+.|+++- +..+.+|++
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 44667777653 3578899999999999887654322234567788999999998 456666663 223589997
Q ss_pred cCC---------------CCCceeEeCCCCCEEEEEcCCCeEEEEECCcee-eeecccC-CCceEEEcC-CCCEEEEEcC
Q psy16005 131 PID---------------YEPSSISLDHEHGLVAVGGADSKISIVENGAKV-SSLPIDY-EPSSISLDH-EHGLVAVGGA 192 (248)
Q Consensus 131 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~s~-~~~~l~~~~~ 192 (248)
... ....+++|..+.+++.+|...+.+.++|.++.. ....... .+..+.++| .+.+++.-.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~- 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS- 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence 543 123467777788889999999999999855332 2222222 456778888 677777655
Q ss_pred CCcEEEEE-cCCCCCCCcccccC----CcCeEEEEEcCCCc-EEEEEcC-CCeEEEEECC
Q psy16005 193 DSKVHIYE-LNNKSLSPKAELDH----LGPVTDCSFSPSNE-YLVASDA-HRKVVLYRVP 245 (248)
Q Consensus 193 d~~v~i~d-~~~~~~~~~~~~~~----~~~v~~~~~s~~~~-~l~~~~~-d~~i~vw~~~ 245 (248)
||.|.+|| .++-+......... ...+..++|+|... .+++... .++|+++++.
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999 44333222211111 22489999999754 4444444 4889998874
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-05 Score=61.45 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=102.6
Q ss_pred CCcEEEEeCCCCCEEEEeC-------Cc--EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---------
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-------GN--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--------- 79 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-------~~--~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 79 (248)
..+.+.++||||+.+++.. +. .+.+++.. +.......+ ...+...|+|+|+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3577889999999888763 33 55665642 333222222 247889999998877776432
Q ss_pred ---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 80 ---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 80 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
+.+.+.+++.++.. . .....|..+.|+|||+.++......+.+-.+ .-..+|.
T Consensus 427 ~~~gql~~~~vd~ge~~--~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~V-------------------vr~~~G~ 482 (591)
T PRK13616 427 PATGQLARTPVDASAVA--S---RVPGPISELQLSRDGVRAAMIIGGKVYLAVV-------------------EQTEDGQ 482 (591)
T ss_pred CCCceEEEEeccCchhh--h---ccCCCcCeEEECCCCCEEEEEECCEEEEEEE-------------------EeCCCCc
Confidence 23333344443321 1 2346799999999999998765432211100 1122232
Q ss_pred EEEEECCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCc--EEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 157 ISIVENGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSK--VHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 157 i~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~--v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
..+ ........ ....+..+.|.+++.++ ++..++. +...++...............++..++=+++ .++..
T Consensus 483 ~~l---~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 483 YAL---TNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred eee---cccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEE
Confidence 222 11111111 22235778999998854 5544443 4444554333211011113566777777763 45566
Q ss_pred cCCCeEEE
Q psy16005 234 DAHRKVVL 241 (248)
Q Consensus 234 ~~d~~i~v 241 (248)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 66665443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-05 Score=60.07 Aligned_cols=208 Identities=20% Similarity=0.245 Sum_probs=111.4
Q ss_pred CCCCCEEEEeC----------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 26 DPKGKNFLYTN----------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 26 s~~~~~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
|||+++++... .+.+.++|+.+++....... ...+....|||+|+.++... ++.|.+++..+++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~- 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ- 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-
Confidence 68999888742 46899999999776654433 56788999999999998875 5789999987774321
Q ss_pred eeccCC----------------CCCeeEEEEecCCCEEEEEeCC--cEEEEEccC---C-C---CCceeEeCCCCCEEEE
Q psy16005 96 NEFHPI----------------GGPIKDIAWSPDNQRMISIVEN--GAKVSSLPI---D-Y---EPSSISLDHEHGLVAV 150 (248)
Q Consensus 96 ~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~---~-~---~~~~~~~~~~~~~~~~ 150 (248)
.+..+. -+.-..+-|+||+++|+...-| .+..+.+.. . . ....+.+-.-
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~------ 151 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA------ 151 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT------
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC------
Confidence 222220 1123568899999999987633 333333221 1 1 1112222111
Q ss_pred EcCCCe--EEEEE-CCceeeeec-------ccCCCceEEEcCCCCEEEEE--cCC---CcEEEEEcCCCCCCCcccccCC
Q psy16005 151 GGADSK--ISIVE-NGAKVSSLP-------IDYEPSSISLDHEHGLVAVG--GAD---SKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 151 ~~~~~~--i~~~~-~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~--~~d---~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
|..+.. +.+++ .+.....+. ....+..+.|.++++.|++. +.+ ..+.++|..++...........
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 222223 44456 222221222 22335788999999844443 222 2477788877655322222222
Q ss_pred cC---eEEEEEc-CCCc-EEEEEcCCCeEEEE
Q psy16005 216 GP---VTDCSFS-PSNE-YLVASDAHRKVVLY 242 (248)
Q Consensus 216 ~~---v~~~~~s-~~~~-~l~~~~~d~~i~vw 242 (248)
+. -....|. +++. ++.....+|.-+||
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 22 2345554 6654 44445566654444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00025 Score=51.74 Aligned_cols=216 Identities=12% Similarity=0.193 Sum_probs=124.2
Q ss_pred EEEEeCCCCCE-EEEeC--CcEEEEEecCCCceeeeeecCCcc--eEEEEECcCCcEEEEEccC-----CeEEEEECCCC
Q psy16005 21 IVLGGDPKGKN-FLYTN--GNSVIIRNIENPAISDIYTEHSCA--VNVAKYSPSGFYIASGDIS-----GKVRIWDTVNK 90 (248)
Q Consensus 21 ~~~~~s~~~~~-l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 90 (248)
..++++|.... ++.+. +....++|....+....+...++. --.-.|||||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 35667775543 44443 456778898877766555432221 2234699999999876443 78999999854
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEE--------Ec----------c----------------CCCCC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVS--------SL----------P----------------IDYEP 136 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~--------~~----------~----------------~~~~~ 136 (248)
- ...-++..|.-....+.|.+||+.++.+.. |+... ++ + ..-.+
T Consensus 151 f-qrvgE~~t~GiGpHev~lm~DGrtlvvanG-GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 151 F-QRVGEFSTHGIGPHEVTLMADGRTLVVANG-GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred c-ceecccccCCcCcceeEEecCCcEEEEeCC-ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 3 234567778888899999999999887653 22211 11 0 11234
Q ss_pred ceeEeCCCCCEEEEEcCCCe-------EEEEECCceeeeeccc--------CCCceEEEcCCCCEEEEEcC-CCcEEEEE
Q psy16005 137 SSISLDHEHGLVAVGGADSK-------ISIVENGAKVSSLPID--------YEPSSISLDHEHGLVAVGGA-DSKVHIYE 200 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~~~~~--------~~~~~~~~s~~~~~l~~~~~-d~~v~i~d 200 (248)
+.++..+++..++.+-..|. +-....++.+..+..+ ..+-+++.+.+..+++..+- .+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 45555666655544322221 1122234444444332 23567888776666665554 45688999
Q ss_pred cCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 201 LNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
..++..+....... ...++ +...-++..+.+|.+.++.
T Consensus 309 a~tG~vv~~a~l~d---aaGva--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 309 AATGAVVSEAALPD---AAGVA--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cCCCcEEecccccc---cccce--eccCceEEecCCceEEecc
Confidence 99998754433221 22222 2333355555667776553
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00033 Score=51.18 Aligned_cols=185 Identities=12% Similarity=0.138 Sum_probs=101.9
Q ss_pred eecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEc-
Q psy16005 54 YTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSL- 130 (248)
Q Consensus 54 ~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~- 130 (248)
+.+-...+..++|+|+ +.++++....+.|...+.+ |+.+....+.+ .+....+++..++.++++.-.++ +.+..+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4455566999999996 5567778888999888874 66666566655 35688899988776666553233 233332
Q ss_pred ----------------c----CCCCCceeEeCCCCCEEEEEcCCCeEEEEE--C---Cceeeee-----c----ccCCCc
Q psy16005 131 ----------------P----IDYEPSSISLDHEHGLVAVGGADSKISIVE--N---GAKVSSL-----P----IDYEPS 176 (248)
Q Consensus 131 ----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~---~~~~~~~-----~----~~~~~~ 176 (248)
. .+.....++|++.++.++++-+.....++. . ...+... . .-..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 1 123356889999888777776666666654 2 1111111 1 123467
Q ss_pred eEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCccccc---C-----CcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 177 SISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELD---H-----LGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 177 ~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~-----~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
.++++|.. .+++....+..|..+| ..++........ | -...-.++|.++|+..+ .+.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 88999854 5667777788888888 444433222211 1 12468899999996444 4466666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00058 Score=55.94 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=39.4
Q ss_pred EEEEe-CCcEEEEEecCCCceeeeeecCCcc-eEEEEECc---CCcEEEEEc------cCCeEEEEECCCCceeeeee
Q psy16005 31 NFLYT-NGNSVIIRNIENPAISDIYTEHSCA-VNVAKYSP---SGFYIASGD------ISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 31 ~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~-v~~~~~s~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 97 (248)
.++.+ .++.+.-.|..+|+.+-........ -..+.-+| ++. ++.+. .+|.|..+|.++++.+....
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 44444 4899999999999987654321100 01111122 444 44443 26899999999998765443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00029 Score=54.13 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=101.3
Q ss_pred cEEEEEecCCCceeeeeec-CCcceEEEE---ECcC----CcEEEEEcc----------CCeEEEEECCCC----ceeee
Q psy16005 38 NSVIIRNIENPAISDIYTE-HSCAVNVAK---YSPS----GFYIASGDI----------SGKVRIWDTVNK----EHILK 95 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~-~~~~v~~~~---~s~~----~~~l~~~~~----------dg~i~iwd~~~~----~~~~~ 95 (248)
..|++.|..+.+.+..+.- ....+.+++ +..+ ..+|+.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888877776665542 233444444 3322 467777742 289999999884 12211
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCC
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEP 175 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 175 (248)
..-...+++|++++-- ++ +|+++....+.++++..... ....-......
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~-----------------------------l~~~~~~~~~~ 130 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKT-----------------------------LLKKAFYDSPF 130 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSS-----------------------------EEEEEEE-BSS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCccc-----------------------------chhhheecceE
Confidence 2222346788888765 33 36665555555555543320 11111222222
Q ss_pred ceEEEcCCCCEEEEEcCCCcEEEEEcCC--CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 176 SSISLDHEHGLVAVGGADSKVHIYELNN--KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
........+.++++|.....+.++..+. .+............++++.|-++++.++.++.+|.+.++..+
T Consensus 131 ~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 131 YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3334444466999999888888886554 222222222245568899998777789999999999998875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-06 Score=67.20 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=69.0
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec-ccCCCc-eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP-IDYEPS-SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~-~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
.+..+.|+|.-.++|.+..+|.+.+.. .-+.+.+++ ...+++ +++|.|||+.||+|-.||+|++.|+.++..+....
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 344556667777777888888777766 455666777 444455 99999999999999999999999999988766644
Q ss_pred ccCCcCeEEEEEcC
Q psy16005 212 LDHLGPVTDCSFSP 225 (248)
Q Consensus 212 ~~~~~~v~~~~~s~ 225 (248)
......|.++-|+|
T Consensus 102 ~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 102 FSVETDISKGIWDR 115 (665)
T ss_pred cccccchheeeccc
Confidence 44567788888864
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.2e-06 Score=68.03 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=78.4
Q ss_pred eCCCCCEEEEEcCCCeEEEEE-CCceeeeecc---cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc-----c
Q psy16005 141 LDHEHGLVAVGGADSKISIVE-NGAKVSSLPI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA-----E 211 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----~ 211 (248)
++..+++++.|+.-|.+++|+ .+.....++. ........++++..++|+|+..|.|.++-+......... .
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 345567888888889999998 3333333333 223455678888889999999999999988774432221 1
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|...|++++|++|+..+++|...|+|..-.+++
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 23678899999999999999999999998877654
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=60.14 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=69.5
Q ss_pred ccCCcEEEEeCCCCCEEEEeCC-----------------cEEEEEecCCCceeeeeecCCcceEEEEECcCCc-EEEEEc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNG-----------------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIASGD 77 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~-----------------~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~ 77 (248)
|.....++..++..+.+..+.. --+++.+..+.+....+..+...|.+++|||..+ ++..++
T Consensus 134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~as 213 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLAS 213 (463)
T ss_pred hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhhcccccchhhhhhccCccccceeeeec
Confidence 4444556666665555554421 0255555555555556678888999999999766 788899
Q ss_pred cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEE
Q psy16005 78 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI 120 (248)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 120 (248)
.+..|+|.|+++.... .....+ ..+++.+|+-|....+.+
T Consensus 214 l~nkiki~dlet~~~v--ssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 214 LGNKIKIMDLETSCVV--SSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred cCceEEEEecccceee--eheecc-CCceeeeeccCCcceeEE
Confidence 9999999999988754 333333 789999998876544443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00023 Score=57.90 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=45.9
Q ss_pred CCCEEEEeCCcEEEEEecCCCceeeeeecCCc------ceE--EEEECcCCcEEEEEccCCeEEEEECCCCceeeeeecc
Q psy16005 28 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSC------AVN--VAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 28 ~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 99 (248)
++..++...++.++-.|..+++..-.+..... .+. .+... ++..++.++.+|.|.-+|.++++.+.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34333434488999999999887765542221 000 01111 2257888889999999999999987666554
Q ss_pred C
Q psy16005 100 P 100 (248)
Q Consensus 100 ~ 100 (248)
.
T Consensus 140 ~ 140 (488)
T cd00216 140 D 140 (488)
T ss_pred C
Confidence 3
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00018 Score=59.44 Aligned_cols=181 Identities=12% Similarity=0.055 Sum_probs=97.6
Q ss_pred CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc------cCC--eEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 36 NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD------ISG--KVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 36 ~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
.+|.+.-.+-..-..+.-..+....+.+.+++|+|+.++... .|. .+.+++... .. . ....+ .....
T Consensus 327 ~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~-~lt~g--~~~t~ 401 (591)
T PRK13616 327 VDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-V-QVLEG--HSLTR 401 (591)
T ss_pred ECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-e-eeecC--CCCCC
Confidence 366555443222222222223334678999999999887654 243 455555422 21 1 12222 23778
Q ss_pred EEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCC
Q psy16005 108 IAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHG 185 (248)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~ 185 (248)
-.|+|||+.+.+..+.....+ +......+.+.+.+ .+.... .....+..+.|||||.
T Consensus 402 PsWspDG~~lw~v~dg~~~~~-------------------v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~ 460 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNTVVR-------------------VIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGV 460 (591)
T ss_pred ceECCCCCceEEEecCcceEE-------------------EeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCC
Confidence 899999988887764321110 11111234444433 222222 4456799999999999
Q ss_pred EEEEEcCCCcEEE---EEcCCCCCCC----cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 186 LVAVGGADSKVHI---YELNNKSLSP----KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 186 ~l~~~~~d~~v~i---~d~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.++... ++.|++ -....+.... .+...-...+.++.|.+++.++ .+..++...+|.+
T Consensus 461 RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 461 RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 888765 467777 3433443111 1111233446889999999855 4444444445543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0011 Score=53.35 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=74.7
Q ss_pred ccCCcEEEEeCCCC-----CEEEEeCCcEEEEEecCC-----Cceeeeeec-CCc----ceEEEEECcCCcEEEEEccCC
Q psy16005 16 QRGQPIVLGGDPKG-----KNFLYTNGNSVIIRNIEN-----PAISDIYTE-HSC----AVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 16 ~~~~v~~~~~s~~~-----~~l~~~~~~~v~v~~~~~-----~~~~~~~~~-~~~----~v~~~~~s~~~~~l~~~~~dg 80 (248)
....|..+.|.|-+ .+||.-....|.||.+.. ++....... ... --..+.|+|....|+.-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 45678999999953 355555689999998752 222211111 111 124677999988887766655
Q ss_pred eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE--EEEE
Q psy16005 81 KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA--KVSS 129 (248)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--~i~~ 129 (248)
.-.++++.......+..+. ..+-|.|.+|.+||++|+++-.... .+||
T Consensus 135 vSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred eeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 5556676655443444554 3578999999999999988876654 6676
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.3e-06 Score=65.28 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceE-EEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVN-VAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
..+.-+.|+|.-..+|.+. +|.+.+..+. -+.+..+..+..+++ +++|.|||+.||.|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4567789999999999987 8888888877 566667766777777 999999999999999999999999999886643
Q ss_pred eeccCCCCCeeEEEEec
Q psy16005 96 NEFHPIGGPIKDIAWSP 112 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~ 112 (248)
..+ ....+|.++.|++
T Consensus 100 ~~~-s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLF-SVETDISKGIWDR 115 (665)
T ss_pred ccc-ccccchheeeccc
Confidence 222 2346788888864
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00064 Score=49.42 Aligned_cols=218 Identities=10% Similarity=0.030 Sum_probs=143.4
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
++....+....++-.|||..-+.+. .+.|--.|..+++....-.+....-..+..-|||..-++-+.. -|.-.|-++.
T Consensus 56 fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ 134 (353)
T COG4257 56 FPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL 134 (353)
T ss_pred eccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc
Confidence 3333446677888899998888876 6677777888888766544555666788889998876664433 4555566555
Q ss_pred ceeeeeecc--CCCCCeeEEEEecCCCEEEEEeC----------CcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 91 EHILKNEFH--PIGGPIKDIAWSPDNQRMISIVE----------NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 91 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
+.. .+.+. ..........|++.|+.-+++.. +-+++|.......+..++..|+|...++.-.+..|-
T Consensus 135 evt-~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 135 EVT-RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ceE-EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceE
Confidence 432 23332 23457788899999998888753 235889999999999999999999999888888888
Q ss_pred EEECCc-eeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 159 IVENGA-KVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 159 ~~~~~~-~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
..|... .-..++. ......+-.+|.|+.-++....+.+.-||..+..-..-.+.+....-.++.....++..+
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 777211 1112221 233455667788888888777888888887765432222222233334444444444333
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.3e-07 Score=71.31 Aligned_cols=184 Identities=10% Similarity=0.128 Sum_probs=117.6
Q ss_pred CcEEEEeCCCCC--EEEEeC-CcEEEEEecCCCce--eeeeecCCcceEEEEECc-CCcEEEEEc----cCCeEEEEECC
Q psy16005 19 QPIVLGGDPKGK--NFLYTN-GNSVIIRNIENPAI--SDIYTEHSCAVNVAKYSP-SGFYIASGD----ISGKVRIWDTV 88 (248)
Q Consensus 19 ~v~~~~~s~~~~--~l~~~~-~~~v~v~~~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~iwd~~ 88 (248)
-+.|++++-+.+ .++.|. +|.|-+-......- .....++..++++++|++ |.+.||.|- .|-.+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 456676655443 566664 78888876654322 233457788999999998 677788773 35679999998
Q ss_pred CCce--eeeeeccC-CCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCC---------CCCceeEeCC-CCCEEEEEcCC
Q psy16005 89 NKEH--ILKNEFHP-IGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPID---------YEPSSISLDH-EHGLVAVGGAD 154 (248)
Q Consensus 89 ~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~ 154 (248)
++-. .....+.. ......+++|..+.+.+.+|... .+.+.+++.. ..+..+..+| .++++++ ..|
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs-~~d 216 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS-NSD 216 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec-ccc
Confidence 7621 11112222 33455688999888888888766 4577777621 2456777888 5666665 449
Q ss_pred CeEEEEECCc----eeeeecc-----cCCCceEEEcCCCC-EEEEEc-CCCcEEEEEcCC
Q psy16005 155 SKISIVENGA----KVSSLPI-----DYEPSSISLDHEHG-LVAVGG-ADSKVHIYELNN 203 (248)
Q Consensus 155 ~~i~~~~~~~----~~~~~~~-----~~~~~~~~~s~~~~-~l~~~~-~d~~v~i~d~~~ 203 (248)
+.+.+||+.. .+..+.. ......++|.|... .+++.. ..++|++||+..
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 9999999422 2222222 22367899999543 444444 457899999853
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.8e-05 Score=62.36 Aligned_cols=143 Identities=14% Similarity=0.196 Sum_probs=86.2
Q ss_pred cEEEEE-ccCCeEEEEECCCCceeeeeeccCCCC-CeeEEEEecC--------CCEEEEEeCCcEEEEEccCCCCCceeE
Q psy16005 71 FYIASG-DISGKVRIWDTVNKEHILKNEFHPIGG-PIKDIAWSPD--------NQRMISIVENGAKVSSLPIDYEPSSIS 140 (248)
Q Consensus 71 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~--------~~~l~~~~~~~~~i~~~~~~~~~~~~~ 140 (248)
++|+.- .....|+-.|++.|+.+. .+..+.. +|..+ .|+ .+.++..+.+++..||.+.... .+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~--eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v 567 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVE--EWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLV 567 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEE--EeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC--cee
Confidence 444433 345678888999988663 3333333 24433 333 2334444455555555543220 000
Q ss_pred eCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEE
Q psy16005 141 LDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 220 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~ 220 (248)
+. ....+.......|++-+.+| +||+|+.+|.||+||- .++...+...+-..+|..
T Consensus 568 -------------------~~---~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 568 -------------------DS---QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIG 623 (794)
T ss_pred -------------------ec---cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeE
Confidence 00 01122334456788887777 7899999999999994 344444455466889999
Q ss_pred EEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 221 CSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 221 ~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
|..+.||++|++.+. ..+.+++.
T Consensus 624 iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEeec-ceEEEEEE
Confidence 999999999988774 46666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0002 Score=44.72 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=67.7
Q ss_pred CEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 146 GLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
+.|++|+.|..|++|+..+.+.++.....+.+++-... ..++.+..+|+|-+|+-....- +. .....+.++.+..
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--Ri--KSK~~~~~~~~~D 90 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--RI--KSKNQVTSMAFYD 90 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--ee--ccCCCeEEEEEEc
Confidence 57889999999999999999999998888988887766 5689999999999998644322 22 2233366665543
Q ss_pred -CC---cEEEEEcCCCeEE
Q psy16005 226 -SN---EYLVASDAHRKVV 240 (248)
Q Consensus 226 -~~---~~l~~~~~d~~i~ 240 (248)
++ +-|++|-.+|.|-
T Consensus 91 ~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 91 INGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCCCCceEEEEEecCCeEE
Confidence 32 3788888888874
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0013 Score=51.67 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=102.4
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc-------------------------------------------eeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA-------------------------------------------ISDIY 54 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-------------------------------------------~~~~~ 54 (248)
.|..+.|+++..-|+++. .|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 477888888877777764 7777776443210 00112
Q ss_pred ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC------CCCCeeEEEEec-----CC---CEEEEE
Q psy16005 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------IGGPIKDIAWSP-----DN---QRMISI 120 (248)
Q Consensus 55 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~~~ 120 (248)
....++|++++.| |=-++|.|..+|.+.|.|++....+....+.. ....++++.|.- |+ -.++++
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346789999997 45589999999999999998877665544443 334677787762 22 244555
Q ss_pred eCCcE-EEEEccC-CCCCceeEeCCCCCEEEEEcCCCe---EEEEE--CCceeee-ecc-cCCCceEEEcCCCCEEEEEc
Q psy16005 121 VENGA-KVSSLPI-DYEPSSISLDHEHGLVAVGGADSK---ISIVE--NGAKVSS-LPI-DYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 121 ~~~~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~--~~~~~~~-~~~-~~~~~~~~~s~~~~~l~~~~ 191 (248)
.+.|. .++.+.. ......+.+.. ++...++. |..++ .++.... ... ..--..+.. . .+++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~-----~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i--~-g~vVvv- 232 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAG-----ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI--P-GYVVVV- 232 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEE-----EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-------EEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEee-----ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc--C-cEEEEE-
Confidence 54443 4444321 11111111100 00001111 11122 1111000 000 000000000 1 134443
Q ss_pred CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEc-----CCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFS-----PSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+..++++...+.+...+.. ...-....+.+- ..+..|++-..+|.+++|.+...+
T Consensus 233 Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 46679999998877644443 222233344452 356678888899999999987654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.001 Score=50.27 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=107.6
Q ss_pred EEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-Cceeeee
Q psy16005 21 IVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKN 96 (248)
Q Consensus 21 ~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~ 96 (248)
..++++.||++++..+ ...|.|.|+...+.+..+.. .+ +..+--+++ +.+.+-+.||.+.-..+.. |+...+.
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEEEecCC-CceEEEecCCceEEEEECCCCCEeEee
Confidence 4578899999998875 67999999999998887742 23 233322333 3477778899998888873 4432111
Q ss_pred --eccCCCCCe-eEEEEecCCCEEEEEeCCc-EE-------------EEEccC---------CCCCceeEeCCCCCEEEE
Q psy16005 97 --EFHPIGGPI-KDIAWSPDNQRMISIVENG-AK-------------VSSLPI---------DYEPSSISLDHEHGLVAV 150 (248)
Q Consensus 97 --~~~~~~~~v-~~~~~~~~~~~l~~~~~~~-~~-------------i~~~~~---------~~~~~~~~~~~~~~~~~~ 150 (248)
.+..-..++ ..-++...+..++..+-+| +. -|.+-. ++.-.-+++++..+.+.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 111112222 2334444433333233222 22 233321 122345667665554443
Q ss_pred Ec--------CCC--eEEEEE--CCceeeeecccCCCceEEEcCCCC-EEEE-EcCCCcEEEEEcCCCCCCCccc
Q psy16005 151 GG--------ADS--KISIVE--NGAKVSSLPIDYEPSSISLDHEHG-LVAV-GGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 151 ~~--------~~~--~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
-. .++ .|.++| +++.+..++...++.+++.+.+.+ +|++ ...++.+.+||..+++.+....
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 21 122 355566 778888888888888999999877 5544 3567899999999998765543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-06 Score=40.99 Aligned_cols=38 Identities=29% Similarity=0.650 Sum_probs=33.3
Q ss_pred ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 49 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
+....+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556678889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00099 Score=55.57 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=67.1
Q ss_pred eCCCC-CEEEEeC--Cc----EEEEEecCCC------cee---eeee----cCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 25 GDPKG-KNFLYTN--GN----SVIIRNIENP------AIS---DIYT----EHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 25 ~s~~~-~~l~~~~--~~----~v~v~~~~~~------~~~---~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
+.-++ .+|++.+ ++ .+++|+++.- ++. +.+. ....++.+++.+.+-+.+|.|-.+|.|..
T Consensus 72 ~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~ 151 (933)
T KOG2114|consen 72 YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVIC 151 (933)
T ss_pred hcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEE
Confidence 33344 5666543 22 6899998642 122 1111 12457889999999899999999999998
Q ss_pred EECC--CCceeeeeeccCCCCCeeEEEEecCCCE-EEEEeCCcEEEEEcc
Q psy16005 85 WDTV--NKEHILKNEFHPIGGPIKDIAWSPDNQR-MISIVENGAKVSSLP 131 (248)
Q Consensus 85 wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~~i~~~~ 131 (248)
+.=+ ..+..........+.+|+.+++..+++. ++++....+.++.+.
T Consensus 152 ~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 152 YKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred EcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 8522 1111111222334679999999988877 555556666666655
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00056 Score=54.05 Aligned_cols=147 Identities=12% Similarity=0.143 Sum_probs=88.6
Q ss_pred CCcEEE-EEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC--------EEEEEeCCcEEEEEccCCCCCcee
Q psy16005 69 SGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ--------RMISIVENGAKVSSLPIDYEPSSI 139 (248)
Q Consensus 69 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~~~~~i~~~~~~~~~~~~ 139 (248)
+.++|+ ++.....++-.|++.|+.+....+ +.. |.-+.+.|+.+ .|+..+++++.-|+.+....-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--- 417 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--- 417 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeec--cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---
Confidence 344443 445556788888888886643333 333 66677777653 233333444444443311100
Q ss_pred EeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 140 SLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+..|..+ +.+.......|++-..+| ++++|+.+|.|++||- .+....+...+...+|.
T Consensus 418 -----------------kl~~~q~---kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 418 -----------------KLAVVQS---KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIK 475 (644)
T ss_pred -----------------eeeeeec---cccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCcee
Confidence 1111111 112234455677776666 8999999999999998 55555556667888999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.+..+.||++|++.+. ..+.+-++
T Consensus 476 hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 476 HVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred eEEeeccCcEEEEecc-cEEEEEEE
Confidence 9999999999887764 45555443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00086 Score=49.01 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=111.5
Q ss_pred EeCCCCCEEEEeC------CcEEEEEecCCC-ceeeeeecCCcceEEEEECcCCcEEEEEcc------------------
Q psy16005 24 GGDPKGKNFLYTN------GNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDI------------------ 78 (248)
Q Consensus 24 ~~s~~~~~l~~~~------~~~v~v~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------ 78 (248)
.|||||.+|+... -|.|-|||...+ +.+.++..|.-.-..+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 4899999998873 268899998743 345567777777788999999999987642
Q ss_pred CCeEEEEECCCCceeeeeecc--CCCCCeeEEEEecCCCEEEEEeCCcE-----------------EEEEcc------CC
Q psy16005 79 SGKVRIWDTVNKEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVENGA-----------------KVSSLP------ID 133 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~-----------------~i~~~~------~~ 133 (248)
.-++.+.|..+++.+.+..++ .+.-.+..++..+||+..+.+-..|- ...+++ ..
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 124556666677766666665 45567899999999988877643221 111111 11
Q ss_pred CCCceeEeCCCCCEEEEEcCC-CeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 134 YEPSSISLDHEHGLVAVGGAD-SKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
..+-+++.+.+..+++..+.. +...+|| ++..+....... +.-.-+...-+++.+.+|.+.++.-..
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G~~~~~s~~~ 349 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQGRIIFYSRAA 349 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEecCCceEEeccccc
Confidence 234466776666666655544 4566798 565554433221 111223344567777788888885433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00077 Score=42.14 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=64.4
Q ss_pred eEEEEECc---CC-cEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCC
Q psy16005 61 VNVAKYSP---SG-FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEP 136 (248)
Q Consensus 61 v~~~~~s~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 136 (248)
|+++++.. || +.|++|+.|..|++|+-+ +.+ .++.. .+.|..++-...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~--~Ei~e-~~~v~~L~~~~~~---------------------- 54 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIV--AEITE-TDKVTSLCSLGGG---------------------- 54 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEE--EEEec-ccceEEEEEcCCC----------------------
Confidence 56666654 33 679999999999999844 322 33333 3566777665543
Q ss_pred ceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcC---CCC-EEEEEcCCCcEE
Q psy16005 137 SSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDH---EHG-LVAVGGADSKVH 197 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~---~~~-~l~~~~~d~~v~ 197 (248)
.++.+..+|+|-+|+....+...+.+..+.++++.. ||. -|++|-.+|.|-
T Consensus 55 ----------~F~Y~l~NGTVGvY~~~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 55 ----------RFAYALANGTVGVYDRSQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----------EEEEEecCCEEEEEeCcceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344566677777777777777776666676665432 222 677777777664
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0033 Score=48.49 Aligned_cols=221 Identities=15% Similarity=0.232 Sum_probs=116.6
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCce---eeee----ecCCcceEEEEECcC---CcEEEE-EccC--------
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI---SDIY----TEHSCAVNVAKYSPS---GFYIAS-GDIS-------- 79 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~---~~~~----~~~~~~v~~~~~s~~---~~~l~~-~~~d-------- 79 (248)
.+++|+|.|||+.+++-..|.|++++ ..+.. +..+ .........++++|+ ..+|+. .+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46789999999988887799999999 44433 2112 123456789999994 233433 3321
Q ss_pred CeEEEEECCCC--c----eeeeeeccC---CCCCeeEEEEecCCCEEEEEeCCc------------EEEEEccCCC----
Q psy16005 80 GKVRIWDTVNK--E----HILKNEFHP---IGGPIKDIAWSPDNQRMISIVENG------------AKVSSLPIDY---- 134 (248)
Q Consensus 80 g~i~iwd~~~~--~----~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~------------~~i~~~~~~~---- 134 (248)
..|.-|....+ . ......+.. ....-..|+|.|||.+.++.++.+ -+|..+....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 13444444333 1 111111121 234456799999997777766432 1455543221
Q ss_pred --------------------CCceeEeCCC-CCEEEEEc-CC--CeEEEEECCc--------------------------
Q psy16005 135 --------------------EPSSISLDHE-HGLVAVGG-AD--SKISIVENGA-------------------------- 164 (248)
Q Consensus 135 --------------------~~~~~~~~~~-~~~~~~~~-~~--~~i~~~~~~~-------------------------- 164 (248)
.+..++|+|. +.++++-. .+ ..|.+...+.
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG 241 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence 1346778887 65555421 22 1233322111
Q ss_pred ---eeeeecccCCCceEEEcC-------CCCEEEEEcCCCcEEEEEcCCCCCC---CcccccCCcCeEEEEEcCCCcEEE
Q psy16005 165 ---KVSSLPIDYEPSSISLDH-------EHGLVAVGGADSKVHIYELNNKSLS---PKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 165 ---~~~~~~~~~~~~~~~~s~-------~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
....+..+..+..+.|-+ .|.++++.-..+.|....++....+ ..+.......+..+++.|||.+++
T Consensus 242 ~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 242 FVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp S---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred cCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 111122223344455432 4456666666677888887654321 112223445799999999999888
Q ss_pred EEcCCCeEE
Q psy16005 232 ASDAHRKVV 240 (248)
Q Consensus 232 ~~~~d~~i~ 240 (248)
+.+.+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0023 Score=48.55 Aligned_cols=130 Identities=10% Similarity=0.132 Sum_probs=78.9
Q ss_pred ceEEEEECcCCcEEEEEcc-----C----CeEEEEECC-CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEE
Q psy16005 60 AVNVAKYSPSGFYIASGDI-----S----GKVRIWDTV-NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~ 129 (248)
..+.....|+|.+.++... . ..=.+|.+. .+..+ ..+..+-...+.++||||++.|+.+.....++|.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~--~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV--RLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE--EeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 4557778888886665433 0 111344444 33322 3333334556789999999999888765555544
Q ss_pred ccCC-------------------CCCceeEeCCCCCEEEEEcCCC-eEEEEE-CCceeeeeccc-CCCceEEEc-CCCCE
Q psy16005 130 LPID-------------------YEPSSISLDHEHGLVAVGGADS-KISIVE-NGAKVSSLPID-YEPSSISLD-HEHGL 186 (248)
Q Consensus 130 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~~~~~~~~~~-~~~~~~~~s-~~~~~ 186 (248)
+... ..+-.++...+|++.+++...| .|..|+ .++.+..+..+ ..+++++|- |+.+.
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCE
Confidence 4321 2334556667778776555544 888888 77888888777 667777774 45554
Q ss_pred EEEEc
Q psy16005 187 VAVGG 191 (248)
Q Consensus 187 l~~~~ 191 (248)
|.+.+
T Consensus 270 L~iTs 274 (307)
T COG3386 270 LYITS 274 (307)
T ss_pred EEEEe
Confidence 44433
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0045 Score=48.78 Aligned_cols=205 Identities=14% Similarity=0.208 Sum_probs=128.6
Q ss_pred EEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEE
Q psy16005 40 VIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMI 118 (248)
Q Consensus 40 v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 118 (248)
+.+++..+......+..+. ....+...|++..++... ....+...+....... .....-......++.+++++.++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~--~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVT--QSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceee--eeccCCCccccceeeCCCCCeEE
Confidence 5666666555555444333 456677888885554433 2234555555422211 11111114456788888888776
Q ss_pred EEe--CCcEEEEEcc---------CCCCCceeEeCCCCCEEEEEcC---CCeEEEEE--CCceeeeecccCCCceEEEcC
Q psy16005 119 SIV--ENGAKVSSLP---------IDYEPSSISLDHEHGLVAVGGA---DSKISIVE--NGAKVSSLPIDYEPSSISLDH 182 (248)
Q Consensus 119 ~~~--~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~ 182 (248)
... .+.+.+.+.. ....+..++++++++.+.++.. ++.+.+.| ..+.....+....+..++++|
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p 169 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP 169 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC
Confidence 666 4455555532 3346788999999976666554 68888888 455555655555568999999
Q ss_pred CCCEEEEEc-CCCcEEEEEcCCCCCCC-cc--cccCCcCeEEEEEcCCCcEEEEEcCC---CeEEEEECCCC
Q psy16005 183 EHGLVAVGG-ADSKVHIYELNNKSLSP-KA--ELDHLGPVTDCSFSPSNEYLVASDAH---RKVVLYRVPDF 247 (248)
Q Consensus 183 ~~~~l~~~~-~d~~v~i~d~~~~~~~~-~~--~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~vw~~~~~ 247 (248)
+|..+++.. .++.|.++|..+..... .. ...-......+.++|+|++++..... +.+...|..++
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 999666665 68899999987765542 10 01223345778999999977665433 58888877664
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00023 Score=59.99 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=85.5
Q ss_pred CCcCcceecccccccccCCcEEEEeCC------CCCEEEEeCCcEEEEEecCCCc--eee-eee--cCCcceEEEEECcC
Q psy16005 1 MSYSNKYIFATLPRTQRGQPIVLGGDP------KGKNFLYTNGNSVIIRNIENPA--ISD-IYT--EHSCAVNVAKYSPS 69 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~~~v~v~~~~~~~--~~~-~~~--~~~~~v~~~~~s~~ 69 (248)
|.++..+++.........+|..++=.. +.+.++.-+++.++.||.+-.. ++. ... ......+|++-+.+
T Consensus 509 mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~ 588 (794)
T PF08553_consen 509 MDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED 588 (794)
T ss_pred EecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC
Confidence 334444556666554444444443211 2234555578899999987432 221 111 23456788888877
Q ss_pred CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc
Q psy16005 70 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL 130 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~ 130 (248)
| +||+|+.+|.||+||-...+ .+..+++...+|.+|..+.||+++++.+..-+.+.+.
T Consensus 589 G-~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 589 G-YIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred c-eEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 6 59999999999999954332 5567778889999999999999999998887766664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0038 Score=46.01 Aligned_cols=116 Identities=9% Similarity=0.168 Sum_probs=78.2
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
....+.++.|+|+.+.|++.. ...-.|+=...|+.++.+.- .-.....+.+..++++.++--.+..+.++.+.....+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 445599999999999998876 44445554466888877642 1223457888888888888888899998887755322
Q ss_pred e-----eeecc--CC-CCCeeEEEEecCCCEEEEEeCC-cEEEEEcc
Q psy16005 94 L-----KNEFH--PI-GGPIKDIAWSPDNQRMISIVEN-GAKVSSLP 131 (248)
Q Consensus 94 ~-----~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~ 131 (248)
. +..+. .+ +.....++|+|..+.|+.+-+. .+.++.+.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 1 11221 12 5577889999988877777644 35665544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0071 Score=46.78 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=51.8
Q ss_pred EeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeecc
Q psy16005 24 GGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 24 ~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 99 (248)
+|.+||+.|+.++ ...+++.|+.+++..+...+-........++|+.+.++-......|+-.|+++.+....+.++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 4788998777664 358899999998877644432232335667888888765555578999999998765444444
Q ss_pred CCCCCeeEEEEe--cCCCEEEE
Q psy16005 100 PIGGPIKDIAWS--PDNQRMIS 119 (248)
Q Consensus 100 ~~~~~v~~~~~~--~~~~~l~~ 119 (248)
...+-...|. .|+..++.
T Consensus 122 --~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 122 --DDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEE
T ss_pred --cccccccceeeCCCccEEEE
Confidence 3444445564 35555544
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0076 Score=46.40 Aligned_cols=169 Identities=11% Similarity=0.092 Sum_probs=87.6
Q ss_pred cEEEEEecCCC----ceeeee--ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc-eeeeeeccCCCCCeeEEEE
Q psy16005 38 NSVIIRNIENP----AISDIY--TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 38 ~~v~v~~~~~~----~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~ 110 (248)
|.+.++++... .....+ ...+++|++++-- +++ |+.+. .+.|.+|++...+ ........ ....+.++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEec
Confidence 88999999874 122212 2457889988766 444 44433 4789999998877 43333332 2234555544
Q ss_pred ecCCCEEEEEe-CCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeec---ccCCCceEEEcCCCCE
Q psy16005 111 SPDNQRMISIV-ENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLP---IDYEPSSISLDHEHGL 186 (248)
Q Consensus 111 ~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~ 186 (248)
. +++++++. .+++.++.++. ....+..+. ....+.++.+-++++.
T Consensus 138 ~--~~~I~vgD~~~sv~~~~~~~-----------------------------~~~~l~~va~d~~~~~v~~~~~l~d~~~ 186 (321)
T PF03178_consen 138 F--KNYILVGDAMKSVSLLRYDE-----------------------------ENNKLILVARDYQPRWVTAAEFLVDEDT 186 (321)
T ss_dssp E--TTEEEEEESSSSEEEEEEET-----------------------------TTE-EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred c--ccEEEEEEcccCEEEEEEEc-----------------------------cCCEEEEEEecCCCccEEEEEEecCCcE
Confidence 3 34555443 23333332211 111122222 1223466677666678
Q ss_pred EEEEcCCCcEEEEEcCCCC---------CCCcccccCCcCeEEE---EEcCC--C------cEEEEEcCCCeEEE
Q psy16005 187 VAVGGADSKVHIYELNNKS---------LSPKAELDHLGPVTDC---SFSPS--N------EYLVASDAHRKVVL 241 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~---------~~~~~~~~~~~~v~~~---~~s~~--~------~~l~~~~~d~~i~v 241 (248)
++++..+|.+.++...... ............|+++ ++.|. + ..++.++.+|.|..
T Consensus 187 ~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 187 IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9999999999999886321 1111111234567777 55552 2 24777788888873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.01 Score=47.27 Aligned_cols=186 Identities=10% Similarity=0.105 Sum_probs=98.3
Q ss_pred ccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc------eeeeeecCCcceEEEEECcCCcEEEEEccCCeEE
Q psy16005 10 ATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA------ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVR 83 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 83 (248)
..++-.. +.+.++.|+.+.++++...+|.++++|+.... ......-....+....+..+|-.+++ .++.+.
T Consensus 74 ~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~ 150 (410)
T PF04841_consen 74 SSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFY 150 (410)
T ss_pred EEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEE
Confidence 3343333 78999999998888888899999999986332 01111111122223334445533343 344444
Q ss_pred EEECCCCceeee--eeccC-------CCCCeeEEEEecCCCEEEEEeCCc-EE-EEEc-----cCCCCCceeEeCCCCCE
Q psy16005 84 IWDTVNKEHILK--NEFHP-------IGGPIKDIAWSPDNQRMISIVENG-AK-VSSL-----PIDYEPSSISLDHEHGL 147 (248)
Q Consensus 84 iwd~~~~~~~~~--~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~-~~-i~~~-----~~~~~~~~~~~~~~~~~ 147 (248)
+.+--....... ...+. +........++.+....+....++ +. +... ....++..++.+|+++.
T Consensus 151 ~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 151 VVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKF 230 (410)
T ss_pred EEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCE
Confidence 433222110000 01111 111101123444555444444433 22 2221 12357889999999999
Q ss_pred EEEEcCCCeEEEEE--CCceeeeeccc--CCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLPID--YEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
+|.-..+|.+.+.. ..+....+... ..+..+.|.-+...++.- ...+.++.
T Consensus 231 iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 231 IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999999998876 33444444443 567788887654433322 33455554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0065 Score=44.95 Aligned_cols=134 Identities=16% Similarity=0.245 Sum_probs=83.5
Q ss_pred CcEEEEeCCCCCEEEEeC--C--cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE-CCCCcee
Q psy16005 19 QPIVLGGDPKGKNFLYTN--G--NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD-TVNKEHI 93 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~--~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~ 93 (248)
.+.+.+++++|+.+++.. + ..++++... ....... ....+....|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887754 3 356665533 3222221 234788899999988777767666777764 3333321
Q ss_pred -eeeeccCCCCCeeEEEEecCCCEEEEEe----CCcEEEEEcc-------------------CCCCCceeEeCCCCCEEE
Q psy16005 94 -LKNEFHPIGGPIKDIAWSPDNQRMISIV----ENGAKVSSLP-------------------IDYEPSSISLDHEHGLVA 149 (248)
Q Consensus 94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~~~i~~~~-------------------~~~~~~~~~~~~~~~~~~ 149 (248)
...........|..+.++|||..++... ...+.+-.+. ....+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1122222222899999999999998887 2223222221 123456788888888777
Q ss_pred EEcCCC
Q psy16005 150 VGGADS 155 (248)
Q Consensus 150 ~~~~~~ 155 (248)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0088 Score=46.29 Aligned_cols=219 Identities=13% Similarity=0.104 Sum_probs=108.5
Q ss_pred EEEeCCCCCEEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEEEC--cCCcEEEEEc---cC----------------
Q psy16005 22 VLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYS--PSGFYIASGD---IS---------------- 79 (248)
Q Consensus 22 ~~~~s~~~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~---~d---------------- 79 (248)
...++|+++.++.. ++..|+..|+++.+....+......+....|. .|+..++-.- .|
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 45667888888766 46789999999988777776666666556664 3566654321 11
Q ss_pred ---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-----EEEEEccCCCCC-------------c
Q psy16005 80 ---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-----AKVSSLPIDYEP-------------S 137 (248)
Q Consensus 80 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-----~~i~~~~~~~~~-------------~ 137 (248)
..|.--|+.+++.. ..+. -+..+..+.|+|.. ..|+.|-++. .+||.++.+... .
T Consensus 165 ~p~~~i~~idl~tG~~~--~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERK--VVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp ---EEEEEEETTT--EE--EEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred CCCceEEEEECCCCcee--EEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 24666677877743 2222 35678889999955 4555554432 378887654321 2
Q ss_pred eeEeCCCCCEEEEEc-----CCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCC----------------C
Q psy16005 138 SISLDHEHGLVAVGG-----ADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD----------------S 194 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----------------~ 194 (248)
.=.|.|+|..+..-+ .+..|.-++ +++.......+ ....+-.++||++++-=+.| .
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 224778887655422 122344455 23222212221 22345567898877643332 1
Q ss_pred cEEEEEcCCCCCCCcc--------cccCCc-CeEEEEEcCCCcEEEEE-cCCCeEEEEEC
Q psy16005 195 KVHIYELNNKSLSPKA--------ELDHLG-PVTDCSFSPSNEYLVAS-DAHRKVVLYRV 244 (248)
Q Consensus 195 ~v~i~d~~~~~~~~~~--------~~~~~~-~v~~~~~s~~~~~l~~~-~~d~~i~vw~~ 244 (248)
-|+++++..++..... ..++.. .=..+.|+|||++++.. ...|...||-+
T Consensus 321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 4667888765532111 111111 12457999999987654 55677776644
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.79 E-value=6e-05 Score=37.16 Aligned_cols=31 Identities=35% Similarity=0.736 Sum_probs=28.6
Q ss_pred cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.|...|.++.|.|+++++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5778899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.02 Score=48.85 Aligned_cols=102 Identities=5% Similarity=-0.069 Sum_probs=61.7
Q ss_pred CcEEEEeCCCCCEEEEeC--C----cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC------CeEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS------GKVRIWD 86 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd 86 (248)
.+..+.+||||++|+.+. + ..+++.|+.+++.+........ ..++|++|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 366778999999999874 2 2788999988864322211111 469999998876655432 3688888
Q ss_pred CCCCceeeeeeccCCCCCee-EEEEecCCCEEEEEeC
Q psy16005 87 TVNKEHILKNEFHPIGGPIK-DIAWSPDNQRMISIVE 122 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~ 122 (248)
+.++.......+........ ....+.++++++..+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~ 242 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA 242 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE
Confidence 88773212222332223333 3333448887765553
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.002 Score=51.04 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=75.4
Q ss_pred cEEEEeCCCCC--------EEEEeCCcEEEEEecCCCce--eeeeecC----CcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 20 PIVLGGDPKGK--------NFLYTNGNSVIIRNIENPAI--SDIYTEH----SCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 20 v~~~~~s~~~~--------~l~~~~~~~v~v~~~~~~~~--~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
|.-+.+.|+.+ .|+.-+++.|.-||..-... +...++| .....|.+-..+| ++++||.+|.|++|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEee
Confidence 66677777654 34444688999999763221 1111222 3345666665555 69999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL 130 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~ 130 (248)
|-...+ .+..+++...+|..+..+.||+.+++.++.-+.+-+.
T Consensus 457 dri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 457 DRIGRR--AKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred hhhhhh--hhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 973333 4467888889999999999999999988877655554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.013 Score=44.61 Aligned_cols=205 Identities=13% Similarity=0.113 Sum_probs=122.4
Q ss_pred EEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce-eeeeec-
Q psy16005 23 LGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH-ILKNEF- 98 (248)
Q Consensus 23 ~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~- 98 (248)
-.|.++...|+.+. .+.|.-|+..+++... +. +.+.+.++..-..+..|+++. .-+.+++.+++.. ......
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 35788888777775 8899999987664432 32 333444444444444555543 3466667655543 111111
Q ss_pred cC-CCCCeeEEEEecCCCEEEEEeC-----Cc-----EEEEEccC-----------CCCCceeEeCCCCCEEEEEcC-CC
Q psy16005 99 HP-IGGPIKDIAWSPDNQRMISIVE-----NG-----AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGA-DS 155 (248)
Q Consensus 99 ~~-~~~~v~~~~~~~~~~~l~~~~~-----~~-----~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~ 155 (248)
.+ .....+.....|+|.+.+.... .. -.+|.+.. -...+.++|+|+++.+..+.. .+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 11 1245567888899887776555 11 15666652 134578999999976665554 47
Q ss_pred eEEEEECC----c---ee--eee-cccCCCceEEEcCCCCEEEEEcCCC-cEEEEEcCCCCCCCcccccCCcCeEEEEEc
Q psy16005 156 KISIVENG----A---KV--SSL-PIDYEPSSISLDHEHGLVAVGGADS-KVHIYELNNKSLSPKAELDHLGPVTDCSFS 224 (248)
Q Consensus 156 ~i~~~~~~----~---~~--~~~-~~~~~~~~~~~s~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s 224 (248)
.|.-++.. . .. ... .....+-.++...+|.+.+++..+| .|..|+.+ ++.+.....+. ..+++++|-
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~Fg 263 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFG 263 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEe
Confidence 77776521 1 11 111 1234567788888998776555554 89999998 77666655443 567888885
Q ss_pred -CCCcEEEEE
Q psy16005 225 -PSNEYLVAS 233 (248)
Q Consensus 225 -~~~~~l~~~ 233 (248)
|+.+.|+..
T Consensus 264 G~~~~~L~iT 273 (307)
T COG3386 264 GPDLNTLYIT 273 (307)
T ss_pred CCCcCEEEEE
Confidence 445555443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.016 Score=45.48 Aligned_cols=170 Identities=10% Similarity=0.114 Sum_probs=84.8
Q ss_pred EEEeCCCCCEEEEe--C-----CcEEEEEecCCCceeeeeecC---CcceEEEEECcCCcEEEEEc--------------
Q psy16005 22 VLGGDPKGKNFLYT--N-----GNSVIIRNIENPAISDIYTEH---SCAVNVAKYSPSGFYIASGD-------------- 77 (248)
Q Consensus 22 ~~~~s~~~~~l~~~--~-----~~~v~v~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-------------- 77 (248)
.+..-|+|+.++++ + -|.+.+.|-++.+........ ...-..+-|.|..+.++|..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 34445789888876 1 257888888877766655432 22345777888888888864
Q ss_pred ------cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCcEEEEEc----------------c--
Q psy16005 78 ------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENGAKVSSL----------------P-- 131 (248)
Q Consensus 78 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~i~~~----------------~-- 131 (248)
...++.+||+.+.+.+....+......+..+.|.. +..+=++++.-...||.+ .
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 23579999999998776666654334566777754 444444443333233322 1
Q ss_pred ---------C-------CCCCceeEeCCCCCEEEE-EcCCCeEEEEEC-----Cceeeeec-----------------cc
Q psy16005 132 ---------I-------DYEPSSISLDHEHGLVAV-GGADSKISIVEN-----GAKVSSLP-----------------ID 172 (248)
Q Consensus 132 ---------~-------~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-----~~~~~~~~-----------------~~ 172 (248)
. +.-++.+.++.|.++|.+ +-..|.++.||. .+...++. ..
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 1 234678889999987765 457899999992 12222222 22
Q ss_pred CCCceEEEcCCCCEEEEEc
Q psy16005 173 YEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~~ 191 (248)
..++-+..|.||+.|.+.+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 3356788999999887764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.6e-05 Score=53.07 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=64.4
Q ss_pred EEEEEcCCCeEEEEECC---ceeeeecccCCCc--eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC-cCeEE
Q psy16005 147 LVAVGGADSKISIVENG---AKVSSLPIDYEPS--SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL-GPVTD 220 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~--~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~-~~v~~ 220 (248)
.+++|+.+|.|++|..+ ...........+. .+..-.++.+..+++.+|.|+.|++.-.+.+.... .|. .++..
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~ 150 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEE 150 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcce
Confidence 56778888888888733 2211122222221 12222355688899999999999998877654443 455 56666
Q ss_pred EEEcCCCcEEEEE--cCCCeEEEEECCC
Q psy16005 221 CSFSPSNEYLVAS--DAHRKVVLYRVPD 246 (248)
Q Consensus 221 ~~~s~~~~~l~~~--~~d~~i~vw~~~~ 246 (248)
+..+..+++++.+ +.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6667777778777 7788888888753
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00024 Score=37.16 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=28.5
Q ss_pred CCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 214 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
....|..++|+|....||.++.+|.|.+|++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 3457999999999999999999999999998
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=43.89 Aligned_cols=184 Identities=12% Similarity=0.111 Sum_probs=107.8
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeee--------------eecCCcceEEEE--ECcC-CcEEEEEccCCe
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI--------------YTEHSCAVNVAK--YSPS-GFYIASGDISGK 81 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~--------------~~~~~~~v~~~~--~s~~-~~~l~~~~~dg~ 81 (248)
.|..+..-|+-+.+++-+|+.++++++........ .......+...+ -.+. ...|+.+. ...
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCE
Confidence 48889999988888888899999999876443331 011223344444 1123 34445444 458
Q ss_pred EEEEECCCC--ce-eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCC---------------------Cc
Q psy16005 82 VRIWDTVNK--EH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYE---------------------PS 137 (248)
Q Consensus 82 i~iwd~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~---------------------~~ 137 (248)
|.+|..... +. ....++. -...+..++|. ++.++.+..++..+.++..... +.
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 888887653 21 1222222 24788999998 6778888888887777762211 11
Q ss_pred eeEeCCCCCEEEEEcCCCeEEEEE-CCceee--eecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc
Q psy16005 138 SISLDHEHGLVAVGGADSKISIVE-NGAKVS--SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
.+.--+++.+++ +..+ .-.+.+ .|+..+ .+.....+..+++. ..+|++.+.+ .|.||++.+++.+....
T Consensus 193 ~~~~~~~~e~Ll-~~~~-~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 193 GIFQLSDNEFLL-CYDN-IGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEeCCceEEE-Eecc-eEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 111122333333 2222 222233 454433 55566677777775 3577776654 59999999998755443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00031 Score=36.76 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=29.5
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
...|.+++|+|...+||.++.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 444
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0089 Score=47.14 Aligned_cols=208 Identities=16% Similarity=0.144 Sum_probs=99.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee--ec------CCcceEEEEECc-----CC---cEEEEEcc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY--TE------HSCAVNVAKYSP-----SG---FYIASGDI 78 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~--~~------~~~~v~~~~~s~-----~~---~~l~~~~~ 78 (248)
..++|++++.|.-| +++.|. +|.+.|.|++....+..- .. ....++++.|+- |+ -.++.|..
T Consensus 85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp -S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 47999999998544 888886 899999999876655431 12 234688888873 33 46788888
Q ss_pred CCeEEEEECCC-Cceeeeeec----cCCCCCeeEEE-EecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEc
Q psy16005 79 SGKVRIWDTVN-KEHILKNEF----HPIGGPIKDIA-WSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 79 dg~i~iwd~~~-~~~~~~~~~----~~~~~~v~~~~-~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (248)
.|.+.+|.+.- ........+ ..+.+++..+. ++.+...-+.+.... +-.+.. ...-+-+++..
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~--~~~l~~---------g~~i~g~vVvv 232 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA--MQGLSK---------GISIPGYVVVV 232 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH--HHGGGG---------T----EEEEEE
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH--hhcccc---------CCCcCcEEEEE
Confidence 99999997641 111011111 12334444444 322221111110000 000000 00112234445
Q ss_pred CCCeEEEEECCc--eeeeecccCCC--ceEEE-----cCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc---CCcCeEE
Q psy16005 153 ADSKISIVENGA--KVSSLPIDYEP--SSISL-----DHEHGLVAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTD 220 (248)
Q Consensus 153 ~~~~i~~~~~~~--~~~~~~~~~~~--~~~~~-----s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~v~~ 220 (248)
.+..++++...+ ..+... .... ..+.+ ...+..|++-..+|.+++|.+..-+.+...... ....+..
T Consensus 233 Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 566788877332 222221 2211 22333 234557777789999999999887765444322 2234556
Q ss_pred EEEcCCCcEEEEEcCC
Q psy16005 221 CSFSPSNEYLVASDAH 236 (248)
Q Consensus 221 ~~~s~~~~~l~~~~~d 236 (248)
..++++|..++-.+..
T Consensus 312 ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPS 327 (395)
T ss_dssp -EE-TTS-EEEE-SSS
T ss_pred cEECCCCCEEEEeCcc
Confidence 7789999977766543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.018 Score=43.57 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=83.7
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCce-eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP 100 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (248)
.+....++..++++..|.|+.=. +.++. ......-.+.+..+.-++||+++++++.-....-||.-..... ..-..
T Consensus 108 ~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~--~~~r~ 184 (302)
T PF14870_consen 108 GITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ--PHNRN 184 (302)
T ss_dssp EEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E--EEE--
T ss_pred EEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccce--EEccC
Confidence 33333344444444445444322 33332 2223344577888999999999999877666678886543222 12222
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEE---------cc------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCce
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVENGAKVSS---------LP------IDYEPSSISLDHEHGLVAVGGADSKISIVENGAK 165 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~~~~i~~---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 165 (248)
-...+..+.|.|++...+.+....++.-+ -. ....+..+++.+++...++|+...-++--|.++.
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGkt 264 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKT 264 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCcc
Confidence 35789999999998776655322233333 11 1223467788888888887666544444455554
Q ss_pred eeeec----ccCCCceEEEcCCCCEEEEEcCCCcEEEE
Q psy16005 166 VSSLP----IDYEPSSISLDHEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 166 ~~~~~----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~ 199 (248)
=+..+ .+.....+.|.++.+-++.| .+|.|.-|
T Consensus 265 W~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 265 WQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp -EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 33332 23445677887665566655 46765444
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.023 Score=44.67 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=97.4
Q ss_pred eeccccccccc-CCcEEEEeC-----------CCCCEEEEeC--CcEEEEEecCC----Cceeeeeec---CC----cce
Q psy16005 7 YIFATLPRTQR-GQPIVLGGD-----------PKGKNFLYTN--GNSVIIRNIEN----PAISDIYTE---HS----CAV 61 (248)
Q Consensus 7 ~~~~~~~~~~~-~~v~~~~~s-----------~~~~~l~~~~--~~~v~v~~~~~----~~~~~~~~~---~~----~~v 61 (248)
+++..++-.+. .......|+ .+.++|+..+ .+.|+|.|+.+ .+..+.+.. +. ...
T Consensus 53 qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P 132 (461)
T PF05694_consen 53 QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP 132 (461)
T ss_dssp SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE
T ss_pred cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC
Confidence 34454444443 355556665 2456777765 78999999874 233333331 11 122
Q ss_pred EEEEECcCCcEEEEEc--cC----CeEEEEECCCCceeeeeeccC-CCCCeeEEEEecCCCEEEEEeC------------
Q psy16005 62 NVAKYSPSGFYIASGD--IS----GKVRIWDTVNKEHILKNEFHP-IGGPIKDIAWSPDNQRMISIVE------------ 122 (248)
Q Consensus 62 ~~~~~s~~~~~l~~~~--~d----g~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~------------ 122 (248)
..+-.-|+|+.++++- .+ |-+.+.|-++-+..-...... ....-+.+-|.|..+.++++.-
T Consensus 133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence 2344457898888752 22 457788877655332222211 1234467778888888888741
Q ss_pred ---------CcEEEEEccCCCCCc------------eeEeC--CCCCE-EEEEcCCCeEEEE-E--CCc----eeeeecc
Q psy16005 123 ---------NGAKVSSLPIDYEPS------------SISLD--HEHGL-VAVGGADSKISIV-E--NGA----KVSSLPI 171 (248)
Q Consensus 123 ---------~~~~i~~~~~~~~~~------------~~~~~--~~~~~-~~~~~~~~~i~~~-~--~~~----~~~~~~~ 171 (248)
..+.+|++....... .+.|. |+..+ ++.+.-..+|..| . .++ .+..++.
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 235889987554333 33333 33333 2222334444443 2 221 2222211
Q ss_pred ------------------cCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCcc---cc---------------cC
Q psy16005 172 ------------------DYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKA---EL---------------DH 214 (248)
Q Consensus 172 ------------------~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~---~~---------------~~ 214 (248)
+.-++.+.+|.|.++|.+.+. .|.|+.||+......... .. .-
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 123578899999999988774 899999999765432111 10 11
Q ss_pred CcCeEEEEEcCCCcEEEEEc
Q psy16005 215 LGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~ 234 (248)
.+...-+..|-||+.|+..+
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 23457788999999887664
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00036 Score=59.46 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=65.8
Q ss_pred CCEEEEeC-CcEEEEEecCCC-ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCC-CCe
Q psy16005 29 GKNFLYTN-GNSVIIRNIENP-AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-GPI 105 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v 105 (248)
+..++.|+ .|.+...|.... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++........+++ ..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 44566665 678887776542 111111234678999999999999999999999999999988765333332221 234
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEccC
Q psy16005 106 KDIAWSPDNQRMISIVENGAKVSSLPI 132 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~i~~~~~ 132 (248)
..+.+..++..++++...| .+|.+..
T Consensus 179 i~v~~t~~nS~llt~D~~G-sf~~lv~ 204 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGG-SFWKLVF 204 (1206)
T ss_pred EEEEEeCCCcEEEEccCCC-ceEEEEe
Confidence 4445555666566655555 4666543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0045 Score=49.94 Aligned_cols=109 Identities=9% Similarity=0.109 Sum_probs=67.3
Q ss_pred CceeEeCCC----CCEEEEEcCCCeEEEEEC-------Ccee----eeec--ccCCCceEEEcCCCCEEEEEcCCCcEEE
Q psy16005 136 PSSISLDHE----HGLVAVGGADSKISIVEN-------GAKV----SSLP--IDYEPSSISLDHEHGLVAVGGADSKVHI 198 (248)
Q Consensus 136 ~~~~~~~~~----~~~~~~~~~~~~i~~~~~-------~~~~----~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i 198 (248)
+..+.|.|- ...+++....+.|.+|.. ++.+ ..+. .+.-+..+.|+|....|++-.....=.+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~ 138 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVL 138 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEe
Confidence 445555553 224444555667777761 1111 1121 2223578899999998888776655566
Q ss_pred EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE-cCCCeEEEEEC
Q psy16005 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRV 244 (248)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~ 244 (248)
++++.............+.|.|.+|.+||+.|+.+ +..=.-++||=
T Consensus 139 ~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 139 PSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 77765554334444567889999999999988765 44445667774
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.023 Score=42.61 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=111.9
Q ss_pred CCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee-----------
Q psy16005 28 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN----------- 96 (248)
Q Consensus 28 ~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------- 96 (248)
.++.|+.|.++.+++++.........+ .+...|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 467777776434999998333222222 2333499999999777766654 499999998754432211
Q ss_pred --eccCCCCCeeEEE---EecCCCEEEEEeCCcEEEEEccC--------------CCCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 97 --EFHPIGGPIKDIA---WSPDNQRMISIVENGAKVSSLPI--------------DYEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 97 --~~~~~~~~v~~~~---~~~~~~~l~~~~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
.+ .....+...+ -......|+++....+.++.+.. +..+..++|. ++.++.+..++ .
T Consensus 84 ~~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f 159 (275)
T PF00780_consen 84 PTKL-PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-F 159 (275)
T ss_pred cccc-cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-e
Confidence 11 1123344444 22344567777777776666543 2334455555 45566665443 5
Q ss_pred EEEE--CCceeeeeccc------------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 158 SIVE--NGAKVSSLPID------------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 158 ~~~~--~~~~~~~~~~~------------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
.+.| ++.....+... ..+..+---+++.+|++- +..-.+.|. .|+............+.++++
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~ 236 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAY 236 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEE
Confidence 5555 22222222111 112222223345566553 333333343 444333222234556777777
Q ss_pred cCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
. ..||+..+. +.|.||++.+++
T Consensus 237 ~--~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 237 S--SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred E--CCEEEEECC-CEEEEEECcCCc
Confidence 3 468877765 459999999875
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.043 Score=43.94 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=40.2
Q ss_pred ceEEEEECcCCcEEEEE-ccCC----eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe
Q psy16005 60 AVNVAKYSPSGFYIASG-DISG----KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
.+....+||+++++|.+ +..| .++++|+++++.+.. .+.. .....+.|.+|++.|+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~--~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIEN--PKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEE--EESEEEEECTTSSEEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccc--cccceEEEeCCCCEEEEEE
Confidence 34467899999988865 3334 599999999975432 2221 1122399999988887765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.055 Score=45.08 Aligned_cols=203 Identities=13% Similarity=0.065 Sum_probs=97.9
Q ss_pred EEEEEecCCCceee--eeecCCcceEEEEECcCCcEEEEEccC------CeEEEEECCCCceeeeeeccCCCCCeeEEEE
Q psy16005 39 SVIIRNIENPAISD--IYTEHSCAVNVAKYSPSGFYIASGDIS------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 39 ~v~v~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 110 (248)
.+..||..+.+-.. .+...... .+++. -++...+.|+.+ ..+..||..++.......+....... ++ .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-A 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-E
Confidence 46678877654322 11111111 12222 366777777753 34778898877643222222111111 22 2
Q ss_pred ecCCCEEEEEeCCc------EEEEEccCCCC---------Cc-eeEeCCCCCEEEEEcCCC-------------------
Q psy16005 111 SPDNQRMISIVENG------AKVSSLPIDYE---------PS-SISLDHEHGLVAVGGADS------------------- 155 (248)
Q Consensus 111 ~~~~~~l~~~~~~~------~~i~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~------------------- 155 (248)
.-+|+..+.|+.++ +..|+...+.. .. .....-++.+++.|+.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 23677767776543 34555432211 11 111223567777777542
Q ss_pred ----eEEEEECCceeeeeccc--CC-CceEEEcCCCCEEEEEcCC------CcEEEEEcCC-CCCCCccccc-CCcCeEE
Q psy16005 156 ----KISIVENGAKVSSLPID--YE-PSSISLDHEHGLVAVGGAD------SKVHIYELNN-KSLSPKAELD-HLGPVTD 220 (248)
Q Consensus 156 ----~i~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~l~~~~~d------~~v~i~d~~~-~~~~~~~~~~-~~~~v~~ 220 (248)
.+..||..........+ .. ...-+..-++++.++|+.+ ..+..||..+ .+-....... .......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 35567744333222111 11 1111223356777777654 2467899987 4432111111 2222233
Q ss_pred EEEcCCCcEEEEEcCCC--eEEEEECCCC
Q psy16005 221 CSFSPSNEYLVASDAHR--KVVLYRVPDF 247 (248)
Q Consensus 221 ~~~s~~~~~l~~~~~d~--~i~vw~~~~~ 247 (248)
+.+ +++..++|+.++ .+-.||..+.
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcCcccc
Confidence 333 678888888887 6777777664
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.014 Score=42.40 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=77.8
Q ss_pred CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEE
Q psy16005 70 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVA 149 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 149 (248)
..+++.|+-.+.+.--|..+|+......+. ..+.+-+.- -|+.++
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~v--------------------------------vgdfVV 67 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIV--------------------------------VGDFVV 67 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEE--------------------------------ECCEEE
Confidence 356777888888888888888766544442 222221111 133566
Q ss_pred EEcCCCeEEEEE--CCceeeeecccCCC-ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 150 VGGADSKISIVE--NGAKVSSLPIDYEP-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
.|...|.+++.+ +|.+.+.+.....+ ......+++..+.+|+.|+..+..|.++...+.....+ .+.-.+-+..|
T Consensus 68 ~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~ 145 (354)
T KOG4649|consen 68 LGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAP 145 (354)
T ss_pred EEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccC-CceeccceecC
Confidence 777888888876 67666666655544 34557889999999999999999999998876654432 22223344555
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.035 Score=41.14 Aligned_cols=163 Identities=17% Similarity=0.278 Sum_probs=101.0
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC------------CCCceeEeCCCCCEEE
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID------------YEPSSISLDHEHGLVA 149 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~~~~ 149 (248)
..+|..+-.-.+....+.+-...+.++.|+|+.+.|++..+....+-.+... ..+..+.+..++++++
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi 144 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI 144 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE
Confidence 4455444332222233445556699999999999999998877655554433 3455677777888888
Q ss_pred EEcCCCeEEEEE--CCcee-----eeecc------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC--CcccccC
Q psy16005 150 VGGADSKISIVE--NGAKV-----SSLPI------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS--PKAELDH 214 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~-----~~~~~------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~~~ 214 (248)
+--.++.+.++. ..... ..+++ ......++|+|....|.++-+-.-+.||........ ......+
T Consensus 145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 888888888764 22111 12222 223467999999998888888888888877643311 0111111
Q ss_pred -------CcCeEEEEEcCC-CcEEEEEcCCCeEEEEEC
Q psy16005 215 -------LGPVTDCSFSPS-NEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 215 -------~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~ 244 (248)
-..|.++.|.+. +..|+-+.+++.+...|.
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 234777888865 445566666666665554
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=55.90 Aligned_cols=95 Identities=15% Similarity=0.306 Sum_probs=66.0
Q ss_pred CEEEEEcCCCeEEEEE-CCce---eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC---e
Q psy16005 146 GLVAVGGADSKISIVE-NGAK---VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP---V 218 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~-~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---v 218 (248)
..++.|+..|.+-..| ++.. .+......++++++|+.+|+.++.|-.+|.|.+||+.+++....+. .|..+ |
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceE
Confidence 3566777777777766 2221 2233456778999999999999999999999999999988765544 34333 3
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 219 TDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
..+.+..++..++++...|. +|.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEE
Confidence 33444455667888877776 554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.062 Score=40.73 Aligned_cols=215 Identities=10% Similarity=0.025 Sum_probs=102.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeee--ecC---CcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY--TEH---SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~--~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
....+..+.|..+..-++++..+.|.. ..+.|+.=... ... .-...++.|.. .+.+++| ..|. .+.-.+.+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~-ll~T~DgG 90 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGL-LLHTTDGG 90 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTE-EEEESSTT
T ss_pred CCCceEEEEEecCCEEEEEecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCce-EEEecCCC
Confidence 445899999997677777887776533 22333321111 111 12366777764 3444544 4453 33334444
Q ss_pred ceeeeeecc-CCCCCeeEEEEecCCCEEEEEeCCcEEE--------EEc---cCCCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 91 EHILKNEFH-PIGGPIKDIAWSPDNQRMISIVENGAKV--------SSL---PIDYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 91 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~i--------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
+.-....+. .-......+....++..++++ ..+... |.. .....+..+..++++++++++.....+.
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~ 169 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS 169 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE
Confidence 432222221 122334445544444444433 333222 222 2234456667789999998887766677
Q ss_pred EEECCcee---eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC-CCC---CCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 159 IVENGAKV---SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN-NKS---LSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 159 ~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
-|+.++.. +.......+..+.|+|++.+.+++ ..|.|++=+.. ..+ ..........-.+..++|.++++..+
T Consensus 170 s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp EE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred EecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence 79977642 223345678999999998876655 77888877621 111 10011101223489999999988777
Q ss_pred EEcCC
Q psy16005 232 ASDAH 236 (248)
Q Consensus 232 ~~~~d 236 (248)
+++..
T Consensus 249 ~gg~G 253 (302)
T PF14870_consen 249 VGGSG 253 (302)
T ss_dssp EESTT
T ss_pred EeCCc
Confidence 76543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.029 Score=41.60 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=44.2
Q ss_pred CCceEEEcCCCCEEEEEcCCCcEEEEE-cCCCCCCCccc-cc-CCcCeEEEEEcCCCcEEEEEc---CCCeEEEEE
Q psy16005 174 EPSSISLDHEHGLVAVGGADSKVHIYE-LNNKSLSPKAE-LD-HLGPVTDCSFSPSNEYLVASD---AHRKVVLYR 243 (248)
Q Consensus 174 ~~~~~~~s~~~~~l~~~~~d~~v~i~d-~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~ 243 (248)
......|++++...++...+...+++. ...++...... .. ..+.|..+.+||||..++... .++.|.+=-
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 556778999988777766666666663 33333322111 11 122899999999999887664 346666543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.11 Score=43.05 Aligned_cols=184 Identities=15% Similarity=0.128 Sum_probs=96.1
Q ss_pred EEeCCCCCEEEEeC------Cc-----------EEEEEecCCCceeeeeecCCcceE---------EEEECcCCc---EE
Q psy16005 23 LGGDPKGKNFLYTN------GN-----------SVIIRNIENPAISDIYTEHSCAVN---------VAKYSPSGF---YI 73 (248)
Q Consensus 23 ~~~s~~~~~l~~~~------~~-----------~v~v~~~~~~~~~~~~~~~~~~v~---------~~~~s~~~~---~l 73 (248)
+++.|...+++.+. ++ .|.-.|+++|+..-.++.....+. -+....+|+ .+
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 46666666666553 11 577778899988766653222222 122223565 77
Q ss_pred EEEccCCeEEEEECCCCceeeeeeccC----------CC-CCe----------------------------eEEEEecCC
Q psy16005 74 ASGDISGKVRIWDTVNKEHILKNEFHP----------IG-GPI----------------------------KDIAWSPDN 114 (248)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~-~~v----------------------------~~~~~~~~~ 114 (248)
+.+.++|.+.+.|.++++.+....+.. .. .++ ..++++|+.
T Consensus 319 ~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~ 398 (527)
T TIGR03075 319 AHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKT 398 (527)
T ss_pred EEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCC
Confidence 899999999999999998642111100 00 000 114555555
Q ss_pred CEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEE--------EcCCCeEEEEE--CCceeeeecccCCCceEEEcCCC
Q psy16005 115 QRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAV--------GGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEH 184 (248)
Q Consensus 115 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~ 184 (248)
.+++....+....+.-. . ....+...++.. ...-+.|.-+| +++.....+...+...-.+.-.+
T Consensus 399 g~~yvp~~~~~~~~~~~--~----~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g 472 (527)
T TIGR03075 399 GLFYVPANEVCMDYEPE--K----VSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAG 472 (527)
T ss_pred CEEEEeccccccccccc--c----cccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECC
Confidence 55555443322111100 0 000000000000 01134566677 66666655544332211122244
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCCCcccc
Q psy16005 185 GLVAVGGADSKVHIYELNNKSLSPKAEL 212 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 212 (248)
.+++.++.+|.++.+|.++++.+-....
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 5777788899999999999998765544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.09 Score=44.03 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=95.7
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee-eeccCCCCCeeEEEEecCCCE
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK-NEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 116 (248)
-.|+|+++. |+....+.-....+-.+.|+.+.. |+.-..+|++.+|++-....... .-.......|....+..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 357888854 555544443344788999997765 55568899999999864331110 111222334555555555544
Q ss_pred EEEEeCCcE--------EEEEccC-CCC---CceeEeCCCCC---EEEEEc-CCCe-EEEEE-CCceeeeeccc-CCCce
Q psy16005 117 MISIVENGA--------KVSSLPI-DYE---PSSISLDHEHG---LVAVGG-ADSK-ISIVE-NGAKVSSLPID-YEPSS 177 (248)
Q Consensus 117 l~~~~~~~~--------~i~~~~~-~~~---~~~~~~~~~~~---~~~~~~-~~~~-i~~~~-~~~~~~~~~~~-~~~~~ 177 (248)
+++.+..-+ .+|.++. ++. ..+-...+++. .++-.. ..+. +..-+ .......+... ..+..
T Consensus 142 vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVK 221 (829)
T ss_pred EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEE
Confidence 444433322 2333321 111 11222112211 111100 1110 00011 11112222222 45677
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 178 ISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 178 ~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
+.+||+.++|+.=...|.|.+-+.+..+....+..+...+...++|.-+.
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 89999999999999999999998887766544443333334466665544
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.14 Score=42.75 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=109.5
Q ss_pred CCCEEEEeC-C------cEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccC-C-----eEEEEECCCCcee
Q psy16005 28 KGKNFLYTN-G------NSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDIS-G-----KVRIWDTVNKEHI 93 (248)
Q Consensus 28 ~~~~l~~~~-~------~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-g-----~i~iwd~~~~~~~ 93 (248)
.+..++.|+ . ..+..+|..+++...... .....-.+++.. ++...++|+.| | ++..||...++..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 455666664 3 467788887764332211 122222334343 56788888888 3 5788898887754
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcE------EEEEccCCCCC---------c-eeEeCCCCCEEEEEcCCC--
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGA------KVSSLPIDYEP---------S-SISLDHEHGLVAVGGADS-- 155 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~------~i~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~-- 155 (248)
....+.......... .-+|...++|+.++. ..|+...+... . .-...-++.+.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 323332222211111 126777788877653 34444322111 1 111234567777777554
Q ss_pred ----eEEEEECCceeeeeccc----CCCceEEEcCCCCEEEEEcCCC-----cEEEEEcCCCCCCCccccc-CCcCeEEE
Q psy16005 156 ----KISIVENGAKVSSLPID----YEPSSISLDHEHGLVAVGGADS-----KVHIYELNNKSLSPKAELD-HLGPVTDC 221 (248)
Q Consensus 156 ----~i~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~-~~~~v~~~ 221 (248)
.+..||..........+ ..-..+ ..-++.+.++|+.|+ +|..||..+.+-....... ....+..+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 35556643333322211 111222 223567888888776 3788999887654332112 22222222
Q ss_pred EEcCCCcEEEEEcCCC-----eEEEEECCC
Q psy16005 222 SFSPSNEYLVASDAHR-----KVVLYRVPD 246 (248)
Q Consensus 222 ~~s~~~~~l~~~~~d~-----~i~vw~~~~ 246 (248)
.+ +++..+.|+.|| +|..||..+
T Consensus 520 ~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 520 VL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EE--CCEEEEEecccCccccceeEEcCCCC
Confidence 22 566667777664 466666544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.13 Score=42.99 Aligned_cols=175 Identities=11% Similarity=0.030 Sum_probs=86.6
Q ss_pred CCCEEEEeC-C------cEEEEEecCCCceee--eeecCCcceEEEEECcCCcEEEEEccCC-----eEEEEECCCCcee
Q psy16005 28 KGKNFLYTN-G------NSVIIRNIENPAISD--IYTEHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVNKEHI 93 (248)
Q Consensus 28 ~~~~l~~~~-~------~~v~v~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 93 (248)
++..++.|+ + ..+..||..+..-.. .+.......... .-+++..+.|+.++ ++..||..+.+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 455555554 2 247778876654321 111111111122 22677778888754 4888998877643
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc------------------------EEEEEccCCCC----------Ccee
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG------------------------AKVSSLPIDYE----------PSSI 139 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------------------------~~i~~~~~~~~----------~~~~ 139 (248)
....++........+ .-+|+..+.|+.++ +..|+...+.. ...-
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 322322211112122 22577666666432 23344322211 0111
Q ss_pred EeCCCCCEEEEEcCCC------eEEEEECCc-eeeee----cccCCCceEEEcCCCCEEEEEcCCC--cEEEEEcCCCCC
Q psy16005 140 SLDHEHGLVAVGGADS------KISIVENGA-KVSSL----PIDYEPSSISLDHEHGLVAVGGADS--KVHIYELNNKSL 206 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~------~i~~~~~~~-~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d~--~v~i~d~~~~~~ 206 (248)
...-++++.+.|+.++ .+..||... ..... +.......++ .-++++.++|+.++ .+..||..+.+-
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-LHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-EECCEEEEEeeecceeehhhcCcccccc
Confidence 1223466677776542 356677443 22222 1111112222 22678888998888 788888888765
Q ss_pred C
Q psy16005 207 S 207 (248)
Q Consensus 207 ~ 207 (248)
.
T Consensus 538 ~ 538 (557)
T PHA02713 538 N 538 (557)
T ss_pred c
Confidence 4
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.11 Score=40.87 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=31.7
Q ss_pred ceEEEEECcCCcEEEEEc-----------cCC-eEEEEECCCC--ceeeeeeccCCCCCeeEEEEecCC
Q psy16005 60 AVNVAKYSPSGFYIASGD-----------ISG-KVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSPDN 114 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~-----------~dg-~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 114 (248)
....++|.++|+++++-. ..+ .|.+++-.++ .......+...-.....+++.+++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G 83 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG 83 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC
Confidence 456789999998777642 223 6777765432 221112222223345778888877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.076 Score=38.14 Aligned_cols=198 Identities=13% Similarity=0.137 Sum_probs=109.2
Q ss_pred eCCCCCEEEEeC--CcEEEEEecCCCceee-eeecCCcceEEEEECcCC---cEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 25 GDPKGKNFLYTN--GNSVIIRNIENPAISD-IYTEHSCAVNVAKYSPSG---FYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 25 ~s~~~~~l~~~~--~~~v~v~~~~~~~~~~-~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
|.-..+.|+... .+.|.-||..+.+..+ .+.+ .+..++.+--.+ .+.+.++..-.|--||-.........++
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~ 99 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTL 99 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeec
Confidence 444445555554 6777779988755443 2222 123333332222 2333333333455577433222111221
Q ss_pred ---c--CCCCCeeEEEEecCCCEEEEEeCCc----------EEEEEccCC--------CCCceeEeCCCCCEE-EEEcCC
Q psy16005 99 ---H--PIGGPIKDIAWSPDNQRMISIVENG----------AKVSSLPID--------YEPSSISLDHEHGLV-AVGGAD 154 (248)
Q Consensus 99 ---~--~~~~~v~~~~~~~~~~~l~~~~~~~----------~~i~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~ 154 (248)
. ..+.....-..+|+|+++.-...+- ...|...+. .-...++|+.+.+.+ .+-+.+
T Consensus 100 ~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 100 FEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred cccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCc
Confidence 1 1134556667789999955443221 233333322 224567788776644 455566
Q ss_pred CeEEEEE----CC-----ceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEE
Q psy16005 155 SKISIVE----NG-----AKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 220 (248)
Q Consensus 155 ~~i~~~~----~~-----~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~ 220 (248)
-.|.-|| +| +.+..+.- +..+-.++++.+|.+.++.-..++|...|..+++.+..+..+ ...|++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qits 258 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITS 258 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEE
Confidence 6776676 22 22222221 223456777888888888888889999999999988777654 667999
Q ss_pred EEEcC
Q psy16005 221 CSFSP 225 (248)
Q Consensus 221 ~~~s~ 225 (248)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.15 Score=40.52 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=47.3
Q ss_pred CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC-eEEEEE-cCC----------------CcEE-EEEcC
Q psy16005 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP-VTDCSF-SPS----------------NEYL-VASDA 235 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-v~~~~~-s~~----------------~~~l-~~~~~ 235 (248)
..+++.+|++++.++...=|.|.++|+.++..+.... +..+. +.=+.. .+. ..+| +-+-.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-GYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-GYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-cCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3578899999999998888999999999887665443 32211 110000 000 1123 34567
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
-|.|-||.+++|.
T Consensus 389 Rg~lEvW~~~~g~ 401 (415)
T PF14655_consen 389 RGILEVWSMRQGP 401 (415)
T ss_pred CCeEEEEecCCCC
Confidence 8999999998873
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.22 Score=42.22 Aligned_cols=101 Identities=13% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCeEEEEECCc----------------------eeeeecccCCCceEEEc--CCCCEEEEEcCCCcEEEE
Q psy16005 144 EHGLVAVGGADSKISIVENGA----------------------KVSSLPIDYEPSSISLD--HEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~~~~~~~~~~~~s--~~~~~l~~~~~d~~v~i~ 199 (248)
+...|+.+..||.|.+|.... +...+..+.....++++ ...++||++++...|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456888999999999996211 11222234456778887 778899999888888877
Q ss_pred EcCCC--CCCCcccccCCcCeEEEEEcCCC------cEEEEEcCCCeEEEEEC
Q psy16005 200 ELNNK--SLSPKAELDHLGPVTDCSFSPSN------EYLVASDAHRKVVLYRV 244 (248)
Q Consensus 200 d~~~~--~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~d~~i~vw~~ 244 (248)
-.... +........+...|-+|+|-++. ..|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65442 22111122356679999998764 26778888999998877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.11 Score=36.93 Aligned_cols=164 Identities=16% Similarity=0.252 Sum_probs=89.5
Q ss_pred cEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-------EEE---EEcc-CCCCCcee
Q psy16005 71 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-------AKV---SSLP-IDYEPSSI 139 (248)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-------~~i---~~~~-~~~~~~~~ 139 (248)
+.|+.+...+.|.+|++.+.+......+.. -+.|..+.++..|+++++.-++. +++ |... ....+.++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444566789999998555444445543 37899999999999999985332 232 2222 11122222
Q ss_pred EeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-CCc--------c
Q psy16005 140 SLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-SPK--------A 210 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~-~~~--------~ 210 (248)
.... . -+.++..+.. ...-.+-+++....+.+++..|-..-|++|+. +.+.+|.+..... ... .
T Consensus 108 RiaG--~-~v~~~~~~~~---~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 108 RIAG--H-RVTPSFNESS---KDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred EEcc--c-ccccCCCCcc---ccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhh
Confidence 1110 0 0000110000 01123445677788999999996666777774 5688888765432 110 0
Q ss_pred cccC--CcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 211 ELDH--LGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 211 ~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
...| .-.+..+++. +.|+|..+ +-.+++..+.
T Consensus 181 l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred hhheecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 0012 2225566664 46777765 4577777654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.14 Score=38.34 Aligned_cols=207 Identities=11% Similarity=0.092 Sum_probs=117.8
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCC------C-ceeeeeec-----CCcceEEEEECcCCc------------E
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN------P-AISDIYTE-----HSCAVNVAKYSPSGF------------Y 72 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~------~-~~~~~~~~-----~~~~v~~~~~s~~~~------------~ 72 (248)
-....++++|.+.+.++.. .+...+||... . .++-.+.. .....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3466899999997777765 67889999761 1 12222221 124567777775322 3
Q ss_pred EEEEccCCeEEEEECCCCce---eeeeeccC-CCCC-eeEEEEec--CCCEEEEEe--CCcEEEEEccCC----------
Q psy16005 73 IASGDISGKVRIWDTVNKEH---ILKNEFHP-IGGP-IKDIAWSP--DNQRMISIV--ENGAKVSSLPID---------- 133 (248)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-~~~~-v~~~~~~~--~~~~l~~~~--~~~~~i~~~~~~---------- 133 (248)
++.+++||+|.-|...-+.. .....+.. .... -..+++.. .+.+|+.+. ...+.+++-...
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999998543221 01111211 1122 34455543 356666664 344566653221
Q ss_pred ------CCCceeEeCCCCCEEE-------------EEcCCCeEEEEE-CCceeeeecccC---CCceEEEcC------CC
Q psy16005 134 ------YEPSSISLDHEHGLVA-------------VGGADSKISIVE-NGAKVSSLPIDY---EPSSISLDH------EH 184 (248)
Q Consensus 134 ------~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~~-~~~~~~~~~~~~---~~~~~~~s~------~~ 184 (248)
..+..+.-- .+++++ .+..-|.|-++| .++.++.+.... .+..++..| .+
T Consensus 183 P~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 111111100 122222 233346788898 778888776443 356677755 45
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCCCcccccC-----CcCeEEEEEcC
Q psy16005 185 GLVAVGGADSKVHIYELNNKSLSPKAELDH-----LGPVTDCSFSP 225 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-----~~~v~~~~~s~ 225 (248)
.+|+---.||+|..||..+++.+-.+.... ...++.+.|..
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 566655679999999999887655444322 23467888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.14 Score=37.74 Aligned_cols=196 Identities=12% Similarity=0.039 Sum_probs=97.8
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeeeecCC-cceEEEEECcCCcEEEEEccCCeEE
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDISGKVR 83 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~ 83 (248)
++...|.....-...+.|..+|.++-+.+ ...|+.+|+.+++......-.. -.-..++... ++...-.=.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence 45555544444455777877777766665 3489999999998776554221 1222344433 34444446789999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEE-eCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISI-VENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
+||..+-+.+..+.++ ..=+.++ .|++.|+.+ +.+.+..++...-... +.|.+.+.
T Consensus 114 ~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~------------------~~i~V~~~ 170 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYP---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV------------------RTIQVTDN 170 (264)
T ss_dssp EEETTTTEEEEEEE-S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE------------------EEEE-EET
T ss_pred EEccccceEEEEEecC---CcceEEE--cCCCEEEEECCccceEEECCcccceE------------------EEEEEEEC
Confidence 9999988766545443 3445555 455555443 2333333332110000 12333333
Q ss_pred CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc--------------ccCCcCeEEEEEcCCCc
Q psy16005 163 GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE--------------LDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------------~~~~~~v~~~~~s~~~~ 228 (248)
+..+.. .+.+.+- +|...|-.=....|...|..+++...... .+...-.+.+++.|..+
T Consensus 171 g~pv~~------LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 171 GRPVSN------LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp TEE---------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred CEECCC------cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 333221 2334443 45444444445566666777665432210 01245678999998876
Q ss_pred EEEEEc
Q psy16005 229 YLVASD 234 (248)
Q Consensus 229 ~l~~~~ 234 (248)
.|+..+
T Consensus 244 ~l~vTG 249 (264)
T PF05096_consen 244 RLFVTG 249 (264)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.4 Score=41.73 Aligned_cols=230 Identities=10% Similarity=0.139 Sum_probs=122.5
Q ss_pred ccCCcEEEEeCCC--CC----EEEEeC--CcEEEEEecCCCceeeee--e--cCCcceEEEEECcCCcEEEEEccCCeEE
Q psy16005 16 QRGQPIVLGGDPK--GK----NFLYTN--GNSVIIRNIENPAISDIY--T--EHSCAVNVAKYSPSGFYIASGDISGKVR 83 (248)
Q Consensus 16 ~~~~v~~~~~s~~--~~----~l~~~~--~~~v~v~~~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 83 (248)
....|.|+.++|- ++ .++.|. +-.+.+.-+......... . .-+..|.-..+-.|..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 3467999999974 32 566664 434444444443333221 1 1123344455555688999999999987
Q ss_pred EEEC--CCCceeeeeeccCCCCCeeEEEEecC-CCEEEEEeCCcEEEEEccCC---------CCCceeEeCCC--CCEEE
Q psy16005 84 IWDT--VNKEHILKNEFHPIGGPIKDIAWSPD-NQRMISIVENGAKVSSLPID---------YEPSSISLDHE--HGLVA 149 (248)
Q Consensus 84 iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~i~~~~~~---------~~~~~~~~~~~--~~~~~ 149 (248)
-+.+ .++..-......--..++.--.|+.. .+.++++++....+|..... .--....++.+ ...++
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~ 688 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLA 688 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEE
Confidence 6644 44432211211112345555556554 44555555555555543321 11111222221 22333
Q ss_pred EEcCCCeEEEE--E--CCceeeeecccCCCceEEEcCCCCEEEEEcCC--------------CcEEEEEcCCCCCCCccc
Q psy16005 150 VGGADSKISIV--E--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD--------------SKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 150 ~~~~~~~i~~~--~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--------------~~v~i~d~~~~~~~~~~~ 211 (248)
.+. .+.+.+. | ..-..++++....+..+++.+....+.+.+.. ..++++|-++.+......
T Consensus 689 ~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~he 767 (1096)
T KOG1897|consen 689 SAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHE 767 (1096)
T ss_pred Eec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecc
Confidence 333 3444443 3 12234557778888889998855555554321 137778877766543333
Q ss_pred ccCCc---CeEEEEEcCC-CcEEEEEcC----------CCeEEEEECCC
Q psy16005 212 LDHLG---PVTDCSFSPS-NEYLVASDA----------HRKVVLYRVPD 246 (248)
Q Consensus 212 ~~~~~---~v~~~~~s~~-~~~l~~~~~----------d~~i~vw~~~~ 246 (248)
..... .|.++.|..| +.+++.|.. .|.|.+|.+..
T Consensus 768 f~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 768 FERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred ccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 22222 3555668888 677777742 47888887755
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=29.68 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=25.5
Q ss_pred cCeEEEEEcCCC---cEEEEEcCCCeEEEEECCC
Q psy16005 216 GPVTDCSFSPSN---EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 216 ~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~ 246 (248)
+.|+++.|||+. .+|+.+-..|.+.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999864 4788887789999999983
|
It contains a characteristic DLL sequence motif. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.24 Score=39.32 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=82.9
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCC--ce-eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee--ee
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENP--AI-SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL--KN 96 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~--~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 96 (248)
.+-|...++.+++...|.+.=|-.... .. +..-....++|.++.||+|.+.||.--.+.+|.+++....+... ..
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 444555555565555444444544322 22 22222456799999999999999999999999999985443221 12
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-----------CCCCceeEeCCCCCEEEEEc
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI-----------DYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 152 (248)
..+..+..|....|+.. .-++...+.|+.++.... ...+.-..|.++.+.++.++
T Consensus 107 ~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22233456889999864 788888999988877532 23455566777776554443
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.083 Score=46.35 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=57.2
Q ss_pred EEEcCCCeEEEEE---CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC--CCCCcccccCCcCeEEEEE
Q psy16005 149 AVGGADSKISIVE---NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK--SLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 149 ~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~~~~~v~~~~~ 223 (248)
++...|+.|.+.. .......++.....++++|+|.|+.+++|-..|++.-|...-. ..+..........|.+|+|
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEE
Confidence 3445566666654 2233444566677899999999999999999999998876533 2222222123567999999
Q ss_pred cCCCcEEEEE
Q psy16005 224 SPSNEYLVAS 233 (248)
Q Consensus 224 s~~~~~l~~~ 233 (248)
-....++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 8877777653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.3 Score=38.53 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=58.6
Q ss_pred CCcEEEEeCCCCCEEEEeC------------C-cEEEEEecCC--Cce--eeeeecCCcceEEEEECcCCcEEEEEccCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN------------G-NSVIIRNIEN--PAI--SDIYTEHSCAVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~------------~-~~v~v~~~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 80 (248)
..+..++|.++|+++++.. . ..|.+++-.+ ++. ...+...-.....+++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 5677899999999888742 1 2676665432 332 23343333456889999988 444 44443
Q ss_pred eEEEEECCCC-----c-eeeeeeccC----CCCCeeEEEEecCCCEEEEEeC
Q psy16005 81 KVRIWDTVNK-----E-HILKNEFHP----IGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 81 ~i~iwd~~~~-----~-~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
..++.|.... + .+....+.. +......++|.|||...++.+.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 3334454321 1 111112222 1344778999999987666553
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.47 Score=39.50 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCC--------CcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 182 HEHGLVAVGGAD--------SKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 182 ~~~~~l~~~~~d--------~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
.+++.++.|+.+ ..+.+||..+.+-........ ......+.+ +++.++.|+.+ +.+.+||..+.
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 355666666542 238889988765322111111 111122222 66767777643 47888887654
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.25 Score=41.85 Aligned_cols=159 Identities=9% Similarity=0.094 Sum_probs=82.2
Q ss_pred CCEEEEeCCcEEEEEecCCCceee------eee----------------cCCcceEEEEECc--CCcEEEEEccCCeEEE
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAISD------IYT----------------EHSCAVNVAKYSP--SGFYIASGDISGKVRI 84 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~~------~~~----------------~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i 84 (248)
.++++.+..+.|.||+.+...... .+. .....|+.+.... +...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 778888889999999986422210 000 0122355554443 4567888999999999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeC--CCCCEEEEEcCCCeEEEEE-
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLD--HEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~- 161 (248)
|.+++-.......-..-...-..+...|+ +.+..+.....++++ ...+++|+++....|.++-
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--------------f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPF--------------FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCC--------------eEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 98642110000000000000000111111 112222233344444 4555666666666666653
Q ss_pred -C--Cc--eeeeecccCCCceEEEcCCC-----C-EEEEEcCCCcEEEEEc
Q psy16005 162 -N--GA--KVSSLPIDYEPSSISLDHEH-----G-LVAVGGADSKVHIYEL 201 (248)
Q Consensus 162 -~--~~--~~~~~~~~~~~~~~~~s~~~-----~-~l~~~~~d~~v~i~d~ 201 (248)
. .+ ......+...+.+++|-++. . ++++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 01 11122355667888886533 2 7778888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.098 Score=41.99 Aligned_cols=109 Identities=20% Similarity=0.300 Sum_probs=70.8
Q ss_pred EEEeCCCC--------CEEEEeCCcEEEEEecCC-CceeeeeecCCcceEEEEECc----CCcEEEEEccCCeEEEEECC
Q psy16005 22 VLGGDPKG--------KNFLYTNGNSVIIRNIEN-PAISDIYTEHSCAVNVAKYSP----SGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 22 ~~~~s~~~--------~~l~~~~~~~v~v~~~~~-~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~ 88 (248)
-+.|.|+. +.|+.-++..|.-.|..- +..+... ....-++--.||. ...++|.+|..|.|++||.-
T Consensus 513 vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi 591 (776)
T COG5167 513 VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI 591 (776)
T ss_pred eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhh
Confidence 46677743 345555666666556432 3222211 1122222222332 44689999999999999976
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID 133 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 133 (248)
..+ .+..+++....|..+..+.+|+++++.+..-+.+-+++..
T Consensus 592 g~r--AKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik 634 (776)
T COG5167 592 GKR--AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIK 634 (776)
T ss_pred cch--hhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccc
Confidence 544 3356777788999999999999999999888877776543
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.46 Score=39.82 Aligned_cols=173 Identities=16% Similarity=0.146 Sum_probs=87.5
Q ss_pred CCCEEEEeC-C------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccCC-----eEEEEECCCCcee
Q psy16005 28 KGKNFLYTN-G------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVNKEHI 93 (248)
Q Consensus 28 ~~~~l~~~~-~------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 93 (248)
++...++|+ + ..+..||..+.+-... +.......... .-+|...|+|+.|| ++..||..+.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCccc
Confidence 345555554 5 3677888877653331 11111111111 12788889999886 4888998887754
Q ss_pred eeeeccCCCCCeeEEEE-ecCCCEEEEEeCCcE-------EEEEccCCCCCc---------e-eEeCCCCCEEEEEcCCC
Q psy16005 94 LKNEFHPIGGPIKDIAW-SPDNQRMISIVENGA-------KVSSLPIDYEPS---------S-ISLDHEHGLVAVGGADS 155 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~-------~i~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~ 155 (248)
....+.. .....+. .-+|+..++++.++. ..+|...+.... . -...-++.+++.|+.++
T Consensus 410 ~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 410 PVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred ccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence 3332221 2222222 226777777764442 344433221110 0 01223566777787776
Q ss_pred e-----EEEEECCceeeeecc--cCCCceEE-EcCCCCEEEEEcCCC-----cEEEEEcCCCC
Q psy16005 156 K-----ISIVENGAKVSSLPI--DYEPSSIS-LDHEHGLVAVGGADS-----KVHIYELNNKS 205 (248)
Q Consensus 156 ~-----i~~~~~~~~~~~~~~--~~~~~~~~-~s~~~~~l~~~~~d~-----~v~i~d~~~~~ 205 (248)
. +..||........-. ........ ..-+++..++|+.|| +|..||..+.+
T Consensus 487 ~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 2 555774333332221 11112221 122566778888775 47777776654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.27 Score=42.13 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=53.8
Q ss_pred ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC----------CCC--CCc--------ccccCCcCeEEEEEcCC---C
Q psy16005 171 IDYEPSSISLDHEHGLVAVGGADSKVHIYELNN----------KSL--SPK--------AELDHLGPVTDCSFSPS---N 227 (248)
Q Consensus 171 ~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~----------~~~--~~~--------~~~~~~~~v~~~~~s~~---~ 227 (248)
..+.|..+.++|+|++++..+..| |.|..+.. ++. ..+ +...+...|..+.|+|. +
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 455678899999999999988766 55544432 111 000 11124567999999997 4
Q ss_pred cEEEEEcCCCeEEEEECCCC
Q psy16005 228 EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~~ 247 (248)
..|+.-.+|+++++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 78999999999999999654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.028 Score=28.53 Aligned_cols=31 Identities=39% Similarity=0.527 Sum_probs=26.0
Q ss_pred cceEEEEECcC-C--cEEEEEccCCeEEEEECCC
Q psy16005 59 CAVNVAKYSPS-G--FYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 59 ~~v~~~~~s~~-~--~~l~~~~~dg~i~iwd~~~ 89 (248)
+.|.++.|||+ + .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46889999984 3 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.48 Score=39.77 Aligned_cols=61 Identities=21% Similarity=0.407 Sum_probs=39.1
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEe--cCCCEEEEEe
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS--PDNQRMISIV 121 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~ 121 (248)
...-+.-|.-++..++-+...++.|||.+.+.......+ ...+.|.++.|. |+++.+++.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVG 93 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVG 93 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEE
Confidence 334444444455444544556899999998876554555 346789999985 4666665554
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.19 Score=42.03 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEEC--cCCcEEEEEccCCeEEEEECC-----C
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYS--PSGFYIASGDISGKVRIWDTV-----N 89 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iwd~~-----~ 89 (248)
.+.-+.-|.-++..++-+ ...+.|||...+.....-. ...+.|.++.|. |+++.+++.+....|.++--. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 444555555555544444 5699999998876543322 447889999996 588888888888999988542 1
Q ss_pred C----ceeeeeeccCCC-CCeeEEEEecCCCEEEEEeCCcEEEEE
Q psy16005 90 K----EHILKNEFHPIG-GPIKDIAWSPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 90 ~----~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~i~~ 129 (248)
. ..+....+..++ .+|.+..|.++|..++ ++.+...+++
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEEC
Confidence 1 112223334444 5788899998875544 4445555544
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.091 Score=37.97 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=47.7
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc------cc-------cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 180 LDHEHGLVAVGGADSKVHIYELNNKSLSPKA------EL-------DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+..++.++++-+.+|.+++||+.+++..... .. .....|..+.++.+|.-+++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456788999999999999999988754322 11 2446788999998888777664 4677888754
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.59 Score=40.21 Aligned_cols=95 Identities=12% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcC
Q psy16005 103 GPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDH 182 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~ 182 (248)
-.|..+.++|+|++++..+..++.|..++........ +. +|. ..-..+.+.-+.....-.....+..+.|+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~-~~-~g~------~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGE-FE-DGK------KEINCRTVPVDERFFTSNSSLEIKQVRWHP 156 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcccc-cc-CCC------cceeEEEEEechhhccCCCCceEEEEEEcC
Confidence 4688999999999999999999887777532111000 00 000 000111122222222222334567889998
Q ss_pred C---CCEEEEEcCCCcEEEEEcCCCC
Q psy16005 183 E---HGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 183 ~---~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
. +..|++=..|+.+++||+....
T Consensus 157 ~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 157 WSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCCCeEEEEecCCEEEEEecCCCC
Confidence 5 4788888999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.12 Score=41.01 Aligned_cols=163 Identities=12% Similarity=0.153 Sum_probs=90.9
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCcee-eee-ecCCc----ceE-EEEECcCCcEEEEEccCCeEEEE-EC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS-DIY-TEHSC----AVN-VAKYSPSGFYIASGDISGKVRIW-DT 87 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~-~~~-~~~~~----~v~-~~~~s~~~~~l~~~~~dg~i~iw-d~ 87 (248)
....+..+-..|||+.+..-++..+.++++.+.... +++ ....+ .|+ .+..-..|..+..++.||-|.-| |+
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 445677788999999999888888999988764332 112 11111 122 12222346678888999988877 55
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCce-
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAK- 165 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~- 165 (248)
+.+... |-.-++...+.|....++.... +.+-+++-..+|++..+. +.++
T Consensus 299 r~~~~p-------~l~h~R~f~l~pa~~~~l~pe~---------------------~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 299 RRDGQP-------HLNHIRNFKLAPAEVQFLLPET---------------------NRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred ecCCCC-------cceeeeccccCcccceeecccc---------------------ccceEEEEcCCCceeeeecccCcc
Confidence 543321 1122333333333222222111 112334445556665554 2211
Q ss_pred eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 166 VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 166 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+-.-.....+..+++||++.++++-. .|.++++.+++....
T Consensus 351 lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 351 LLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred eehhhhhcCcceeeeCcccchheeec-CCceEEEEecCCCCC
Confidence 11112233567789999999888744 567999999887654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=35.88 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=24.4
Q ss_pred ceEEEEECcCC------cEEEEEccCCeEEEEECCC
Q psy16005 60 AVNVAKYSPSG------FYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 60 ~v~~~~~s~~~------~~l~~~~~dg~i~iwd~~~ 89 (248)
.+.+++|||.| -+|++.+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999943 4688889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.2 Score=38.83 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=42.8
Q ss_pred CEEEEe-CCcEEEEEecCCCceeeeeecCCcceE-------------EEEECc--CCcEEEEEcc----------CCeEE
Q psy16005 30 KNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVN-------------VAKYSP--SGFYIASGDI----------SGKVR 83 (248)
Q Consensus 30 ~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~-------------~~~~s~--~~~~l~~~~~----------dg~i~ 83 (248)
..++.+ .|+.+.-.|.++|+....+. .++.|. .+.-.| .+..+++|+. +|.|+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 355555 49999999999999886652 222211 111223 2345666542 68899
Q ss_pred EEECCCCceeeeeec
Q psy16005 84 IWDTVNKEHILKNEF 98 (248)
Q Consensus 84 iwd~~~~~~~~~~~~ 98 (248)
-+|.++|+.+.....
T Consensus 340 A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 340 AFDVNTGALVWAWDP 354 (764)
T ss_pred EEECCCCcEeeEEec
Confidence 999999998765543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.023 Score=48.38 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=74.2
Q ss_pred ccccCCcEEEEeCCC-CCEEEEeCCcEEEEEecC--CCceeeeee-----cCCcceEEEEECc---CCcEEEEEccCCeE
Q psy16005 14 RTQRGQPIVLGGDPK-GKNFLYTNGNSVIIRNIE--NPAISDIYT-----EHSCAVNVAKYSP---SGFYIASGDISGKV 82 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~-~~~l~~~~~~~v~v~~~~--~~~~~~~~~-----~~~~~v~~~~~s~---~~~~l~~~~~dg~i 82 (248)
.+..|.+-.++|-.- -..+. -.-|.+.||+++ .|+....+. .....+.-+.|.| +.-++..+..++.+
T Consensus 129 kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred hcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 344555655655321 11111 113577888875 344333222 2233445555555 66677778888999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
++.+..+... ..+..|...+..++|-..|-.++.+ ++|||..++.+..||.++.|.
T Consensus 208 ~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~--------------------lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 208 RLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLAS--------------------LSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eEeeechHHH---HHHHhcCCCcccHHHHhhchhhhee--------------------eCCCCcEEEEeecCCccceee
Confidence 9887765542 3344588888888877665433321 578888888888888887776
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.71 Score=35.88 Aligned_cols=157 Identities=11% Similarity=0.086 Sum_probs=76.0
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCc
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPS 137 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 137 (248)
...+.++.+.|++.+++++. .|.+..- .+.+..........-...++.+.+.++++.++++. .+..+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~-------- 240 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFN-------- 240 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEc--------
Confidence 45678888999887766654 4544421 11221111111222345678888888777655543 2221110
Q ss_pred eeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc--ccCC
Q psy16005 138 SISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE--LDHL 215 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~ 215 (248)
...+|. -|... ..........+..+.+.|++..++++ .+|.+. .....++.=.... ..-.
T Consensus 241 -------------s~d~G~--sW~~~-~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~ 302 (334)
T PRK13684 241 -------------DPDDLE--SWSKP-IIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVP 302 (334)
T ss_pred -------------cCCCCC--ccccc-cCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCC
Confidence 001110 01100 00000012335677888887765554 466554 3444433211111 1122
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.....+.|..+++.++ .+..|.|.-|+-
T Consensus 303 ~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 303 SNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred cceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 3577888877766655 445778877653
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.89 Score=36.77 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=61.5
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCce--eeee----e-cCCcceEEEEECcCC------cEEEEEc-----
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAI--SDIY----T-EHSCAVNVAKYSPSG------FYIASGD----- 77 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~--~~~~----~-~~~~~v~~~~~s~~~------~~l~~~~----- 77 (248)
......|+|.|||++|++-. .|.|++++..++.. ...+ . ........++++|+- .+|+...
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 45688999999999888876 69999987654432 1111 1 124668899999874 2444331
Q ss_pred -----cCCeEEEEECCCC--c----eeeeeeccC-CCCCeeEEEEecCCCEEEEEeCC
Q psy16005 78 -----ISGKVRIWDTVNK--E----HILKNEFHP-IGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 78 -----~dg~i~iwd~~~~--~----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
....|.-|.+... . ......++. ....-..|+|.|||++.++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1223444544321 1 111111111 01223568899999877776654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.6 Score=34.58 Aligned_cols=154 Identities=10% Similarity=0.071 Sum_probs=87.2
Q ss_pred cceEEEEECcCCcEEEEEccCC--eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCC
Q psy16005 59 CAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEP 136 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 136 (248)
.....+.|..++.++-+.+.-| .|+.+|+.+++......++. .---..++...| +
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d------------~---------- 101 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGD------------K---------- 101 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETT------------E----------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECC------------E----------
Confidence 3456788877888888877766 68999999998665555542 111122232221 1
Q ss_pred ceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-
Q psy16005 137 SSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD- 213 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~- 213 (248)
++...-.++...+|| +-+.+.+++....-..++ .|++.|+.......++++|..+.+........
T Consensus 102 ----------l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 102 ----------LYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp ----------EEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred ----------EEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 222234566777788 445566666666666676 45777777777788999998877654433221
Q ss_pred ---CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 214 ---HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 214 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.-..++.+.|- +|...|=.=....|..-|..+|+
T Consensus 170 ~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 170 NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 12346667775 56555545455566666766653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.54 Score=34.02 Aligned_cols=129 Identities=17% Similarity=0.272 Sum_probs=77.8
Q ss_pred CcceEEEEECcCCcEEEEEccC---------CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE-
Q psy16005 58 SCAVNVAKYSPSGFYIASGDIS---------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV- 127 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i- 127 (248)
+...+.-..+|+|++++-.-.| |.++.|-....-.. +...-..-..++|+.+.+.+.........+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~----i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVEL----IWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCcee----eehhccCCccccccccCcEEEEEccCceEEe
Confidence 4456677789999984422222 44555543322111 111123446789998888877765444333
Q ss_pred -EEc----------------cC-----CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccC-CCceEEEc-
Q psy16005 128 -SSL----------------PI-----DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDY-EPSSISLD- 181 (248)
Q Consensus 128 -~~~----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~-~~~~~~~s- 181 (248)
|+. +. ...+-.++++.+|++.++.-..+++..+| +|+.+.++..+. .+++++|-
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 553 22 12244566777889999999999999999 888888887654 36777775
Q ss_pred CCCCEEEEE
Q psy16005 182 HEHGLVAVG 190 (248)
Q Consensus 182 ~~~~~l~~~ 190 (248)
|+-..+++.
T Consensus 264 kn~d~~yvT 272 (310)
T KOG4499|consen 264 KNLDILYVT 272 (310)
T ss_pred CCccEEEEE
Confidence 333344443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.32 Score=38.74 Aligned_cols=81 Identities=9% Similarity=0.153 Sum_probs=56.1
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcc-eEEEEECcC-----------------Cc-EEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCA-VNVAKYSPS-----------------GF-YIAS 75 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~-v~~~~~s~~-----------------~~-~l~~ 75 (248)
....+.++..+|++++.++.+ -|.|.++|+.++..++.+++..+. +.-+..... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 456688999999999888875 689999999999888887766543 111111111 11 2344
Q ss_pred EccCCeEEEEECCCCceeeee
Q psy16005 76 GDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~ 96 (248)
+-.-|.|.||.++.+..+..+
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred eccCCeEEEEecCCCCEEEEE
Confidence 667889999999988765433
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.61 Score=34.25 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=45.9
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCC----Cceeee-eeccCCCCCeeEEEE
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVN----KEHILK-NEFHPIGGPIKDIAW 110 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~----~~~~~~-~~~~~~~~~v~~~~~ 110 (248)
.-.+||+.+++....-....-.+.+-.+-+||++|.+|+.. ..+++++... ...... ..+. ....-....-
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 34588988876544322334445556678899999988642 3477777644 111000 0111 1222333444
Q ss_pred ecCCCEEEEEeCC
Q psy16005 111 SPDNQRMISIVEN 123 (248)
Q Consensus 111 ~~~~~~l~~~~~~ 123 (248)
-|||+.|+.++..
T Consensus 126 L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 126 LPDGRVLIVGGSN 138 (243)
T ss_pred CCCCCEEEEeCcC
Confidence 5677777776654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.1 Score=36.86 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=66.9
Q ss_pred CEEEEEeCCcEEEEEccCCCCCce-eEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCCC----ceEEEcCCCCEEE
Q psy16005 115 QRMISIVENGAKVSSLPIDYEPSS-ISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYEP----SSISLDHEHGLVA 188 (248)
Q Consensus 115 ~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~----~~~~~s~~~~~l~ 188 (248)
...+....+|...|.+........ +...++|.+++... ..+..+| .|+.+.....+... ..+..-|+|++|+
T Consensus 128 ~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~ 205 (477)
T PF05935_consen 128 SYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLI 205 (477)
T ss_dssp EEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEE
T ss_pred ceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEE
Confidence 445555566777787766544433 67778888887655 7788888 77777666655532 5677788998888
Q ss_pred EEc--------------CCC---------cEEEEEcCCCCCCCcc---------------cccCCcCeEEEEEcC-CCcE
Q psy16005 189 VGG--------------ADS---------KVHIYELNNKSLSPKA---------------ELDHLGPVTDCSFSP-SNEY 229 (248)
Q Consensus 189 ~~~--------------~d~---------~v~i~d~~~~~~~~~~---------------~~~~~~~v~~~~~s~-~~~~ 229 (248)
.+. .|. .+..||+..--..... ....--.++++.+.+ ++..
T Consensus 206 l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~i 285 (477)
T PF05935_consen 206 LASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSI 285 (477)
T ss_dssp EEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEE
T ss_pred EEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeE
Confidence 776 121 2344444321100000 000113588999999 5566
Q ss_pred EEEEcCCCeEEEEECCCCC
Q psy16005 230 LVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~~~ 248 (248)
|+++-.-..|...|.++++
T Consensus 286 ivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 286 IVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp EEEETTT-EEEEEE-TTS-
T ss_pred EEEcCcceEEEEEECCCCc
Confidence 6666555577777766653
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.11 Score=37.05 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCEEEEeC-CcEEEEEecCCC-ceeeeeecCCcceEEEEE-CcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 29 GKNFLYTN-GNSVIIRNIENP-AISDIYTEHSCAVNVAKY-SPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~-~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+..+++|. +|.|++|+.... .....+..-...|.++-- -.++.+..++..+|.|+.|++.-.+.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 34555654 999999986632 222222222233333322 225567889999999999998877643
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.96 Score=36.19 Aligned_cols=130 Identities=17% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCcEEEEEccCCeEEEEECCCCce-----eeeeeccCCCCCeeEEEEec-----CCCEEEEEeCCcEEEEEcc-------
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEH-----ILKNEFHPIGGPIKDIAWSP-----DNQRMISIVENGAKVSSLP------- 131 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~~~i~~~~------- 131 (248)
+...|++||.+|.++||+...++. +.... -+.+|..+..-+ +...|++-.-..+.+|.+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 346899999999999999865442 12222 246677666432 3345665555555555542
Q ss_pred --------------CCCCCceeEeCC----C-CCEEEEEcCCCeEEEEECCceeee--ecccCCCceEEEcCCCCEEEEE
Q psy16005 132 --------------IDYEPSSISLDH----E-HGLVAVGGADSKISIVENGAKVSS--LPIDYEPSSISLDHEHGLVAVG 190 (248)
Q Consensus 132 --------------~~~~~~~~~~~~----~-~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~ 190 (248)
.......++.-| . ...+.+-+.||.+.+++....... ++.-.-+..+++.|....|+++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEe
Confidence 112222233222 2 357888899999999996655433 3333346778999988899999
Q ss_pred cCCCcEEEEEc
Q psy16005 191 GADSKVHIYEL 201 (248)
Q Consensus 191 ~~d~~v~i~d~ 201 (248)
+.+..+.-|..
T Consensus 193 sss~~l~~Yky 203 (418)
T PF14727_consen 193 SSSWTLECYKY 203 (418)
T ss_pred cCceeEEEecH
Confidence 98888888865
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.5 Score=38.22 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=41.8
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecCCc--------ceEEEEEC----------------cCCcEEEEEccCCeEE
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEHSC--------AVNVAKYS----------------PSGFYIASGDISGKVR 83 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--------~v~~~~~s----------------~~~~~l~~~~~dg~i~ 83 (248)
+..++.++ ++.|+-.|..+|+.+-.+..... ....+.+. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 33444444 78899999999987766542211 01122221 1334778888899999
Q ss_pred EEECCCCceee
Q psy16005 84 IWDTVNKEHIL 94 (248)
Q Consensus 84 iwd~~~~~~~~ 94 (248)
-.|.++|+...
T Consensus 274 ALDA~TGk~~W 284 (764)
T TIGR03074 274 ALDADTGKLCE 284 (764)
T ss_pred EEECCCCCEEE
Confidence 99998888654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.26 Score=35.64 Aligned_cols=64 Identities=13% Similarity=0.259 Sum_probs=39.0
Q ss_pred ECcCCcEEEEEccCCeEEEEECCCCceeeee-e----cc-------CCCCCeeEEEEecCCCEEEEEeCCcEEEEE
Q psy16005 66 YSPSGFYIASGDISGKVRIWDTVNKEHILKN-E----FH-------PIGGPIKDIAWSPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 66 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~----~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~ 129 (248)
+..++++|+.-+.+|.+++||+.+++.+... . +. .....|..+.++.+|.-+++-+++....|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 3446788999999999999999988754222 1 11 123455555666556555554444434443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.69 Score=33.00 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=71.8
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCC--CceeeeeecCCcceEEEEECcCCcEEEEEccC---C---eEEEE-ECCC-
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIEN--PAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---G---KVRIW-DTVN- 89 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g---~i~iw-d~~~- 89 (248)
+..+.-++.+.+++++++..|.+|++.+ .+....+. --+.|..+.++..|++|+|--.+ . .+|+| |.+.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 3344444434444556688999999883 33444553 34789999999999999996432 2 55664 2211
Q ss_pred --CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 90 --KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 90 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
........+.+|... .+... ...+...+-.++....+.+++..|-..-|++|+. +.+.+|.
T Consensus 99 ~~~~~~v~vRiaG~~v~------~~~~~----~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~ 161 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVT------PSFNE----SSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFT 161 (215)
T ss_pred cccCCcEEEEEcccccc------cCCCC----ccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEE
Confidence 111111122222100 00000 0123356677778888888888876555555444 4566665
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.88 Score=33.82 Aligned_cols=182 Identities=13% Similarity=0.051 Sum_probs=113.2
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE----------EEEE
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA----------KVSS 129 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~----------~i~~ 129 (248)
.-..++-.|||..-+++...|.|--.|..+++... ..+ +.......+...|||..-++-+...+ .-|.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~-ypL-g~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET-YPL-GSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEE-Eec-CCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEee
Confidence 44677888999888998888888888998888532 233 33456677888888876655443322 2344
Q ss_pred ccC---CCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeee--cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 130 LPI---DYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSL--PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 130 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
+.. ........|++.|++..++... .---.| ....+..+ +....+..++..|||..-++.-.++.|-..|..+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccc-cceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 432 2345677889999888876532 111122 22233333 3455678899999999888877777788888777
Q ss_pred CCCCCcccc-cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 204 KSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 204 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+........ +....-+.+--+|.|+.-++....+.+.-+|-
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCc
Confidence 643221111 11233445555677777777666666666554
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.96 Score=36.14 Aligned_cols=105 Identities=11% Similarity=0.080 Sum_probs=69.1
Q ss_pred EEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC-C-ceeeee--c--c-cCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 128 SSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN-G-AKVSSL--P--I-DYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~--~--~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
+++...+++.++.|++|.+.+|+--.+..|.+++. + +..... . . ...+..+.|+.+ .-+|.-...| +.+|-
T Consensus 61 fdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~ 138 (657)
T KOG2377|consen 61 FDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQ 138 (657)
T ss_pred eeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEE
Confidence 33445568899999999999999999999999872 1 111111 1 1 223667788866 4555555555 77777
Q ss_pred cCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 201 LNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
....+...+....|...|.=..|.++-+.++-++
T Consensus 139 v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 139 VLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 6655443344445778888889999887654443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.16 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.8
Q ss_pred CCCCEEEEeC--CcEEEEEecCCCceeeeeec
Q psy16005 27 PKGKNFLYTN--GNSVIIRNIENPAISDIYTE 56 (248)
Q Consensus 27 ~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~ 56 (248)
|+++.|+++. ++.|.++|..+++....+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788777765 78999999988887776654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.5 Score=34.91 Aligned_cols=101 Identities=9% Similarity=0.040 Sum_probs=57.4
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCce--eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce---
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI--SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--- 92 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--- 92 (248)
+....+..++||.+++++..|.+..=. +.++. ...-......++++.+.+++..++++ ..|.+. +....++.
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~-d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTW-EPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEec-CCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence 445566778999999999877655422 22322 21122335678999999998877765 456543 33334431
Q ss_pred --eeeeeccCCCCCeeEEEEecCCCEEEEEe
Q psy16005 93 --ILKNEFHPIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 93 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
............+..+.|.++++.++++.
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~ 346 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGG 346 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEEC
Confidence 11111111123578888887766555443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.6 Score=35.50 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 184 HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 184 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..++|+|+..|-|++||--.... .....+....|..+..+.+|+++++.+.. .+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rA-KtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRA-KTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchh-hhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 34999999999999999654433 33344667789999999999998887753 66666653
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.5 Score=33.29 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=99.2
Q ss_pred cEEEEeCCCCCEEEE--eC----C-------cEEEEEecCCCceeeeeec------CCcceEEEEECcC-C----cEEEE
Q psy16005 20 PIVLGGDPKGKNFLY--TN----G-------NSVIIRNIENPAISDIYTE------HSCAVNVAKYSPS-G----FYIAS 75 (248)
Q Consensus 20 v~~~~~s~~~~~l~~--~~----~-------~~v~v~~~~~~~~~~~~~~------~~~~v~~~~~s~~-~----~~l~~ 75 (248)
|..+...+++++-+. |. . -.|.+||+.+++.++.+.- ..+.+..+.+... + .+++.
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 556777777776554 31 1 2889999999998877652 2456777877662 1 34433
Q ss_pred E-ccCCeEEEEECCCCceeeeee--cc---------------CCCCCeeEEEEec---CCCEEEEEeCCcEEEEEccC--
Q psy16005 76 G-DISGKVRIWDTVNKEHILKNE--FH---------------PIGGPIKDIAWSP---DNQRMISIVENGAKVSSLPI-- 132 (248)
Q Consensus 76 ~-~~dg~i~iwd~~~~~~~~~~~--~~---------------~~~~~v~~~~~~~---~~~~l~~~~~~~~~i~~~~~-- 132 (248)
+ +..+-|.|+|+.+++...... +. .....+..++.+| +++.|+...-.+.+++.++.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence 3 444689999998876421110 00 0123467777766 77788887766666665421
Q ss_pred ----------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-----eeeeeccc----CCCceEEEc
Q psy16005 133 ----------------------DYEPSSISLDHEHGLVAVGGADSKISIVENGA-----KVSSLPID----YEPSSISLD 181 (248)
Q Consensus 133 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~----~~~~~~~~s 181 (248)
......++++++|.++.+--..+.|..|+... ....+... .-+..+.+.
T Consensus 163 L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 163 LRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp HCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred hhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 12345677888888888888999999999554 22233222 224667777
Q ss_pred C--CCCEEEE
Q psy16005 182 H--EHGLVAV 189 (248)
Q Consensus 182 ~--~~~~l~~ 189 (248)
+ +|.+.+.
T Consensus 243 ~~~~g~L~v~ 252 (287)
T PF03022_consen 243 PEGDGYLWVL 252 (287)
T ss_dssp T--TS-EEEE
T ss_pred cccCceEEEE
Confidence 6 5554443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.038 Score=47.20 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=46.7
Q ss_pred CceEEEcC---CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEE-----------EcCCCcEEEEEcCCCeEE
Q psy16005 175 PSSISLDH---EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCS-----------FSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 175 ~~~~~~s~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~-----------~s~~~~~l~~~~~d~~i~ 240 (248)
+.-+.|.| +..++..+-.++.+++....+... .+..+|...+..++ .||||+.+++++.||.++
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 44455554 556777888888888877765443 22224655444443 589999999999999999
Q ss_pred EEEC
Q psy16005 241 LYRV 244 (248)
Q Consensus 241 vw~~ 244 (248)
+|.+
T Consensus 261 f~Qi 264 (1283)
T KOG1916|consen 261 FYQI 264 (1283)
T ss_pred eeee
Confidence 8864
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.9 Score=36.14 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=39.9
Q ss_pred ceEEEEECcCCcEEEEEc-cC----CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC
Q psy16005 60 AVNVAKYSPSGFYIASGD-IS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
.+..+.|+||+++|+.+. .+ -.+++.|+.+++.+. ..+.. .-..++|.+|++.|+....
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-~~i~~---~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-ELLDN---VEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-ccccC---cceEEEEeeCCCEEEEEEe
Confidence 467789999999887653 22 368899998876321 12221 1256999999988877654
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.41 Score=33.23 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCceEEEcCCC------CEEEEEcCCCcEEEEEcCC
Q psy16005 174 EPSSISLDHEH------GLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 174 ~~~~~~~s~~~------~~l~~~~~d~~v~i~d~~~ 203 (248)
.+..++|||.| -+|++-+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 56789999944 2888889999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.1 Score=33.84 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=92.0
Q ss_pred CCCCEEEEeCCcEEEEEecCCCceeeeeecC--CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC----
Q psy16005 27 PKGKNFLYTNGNSVIIRNIENPAISDIYTEH--SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP---- 100 (248)
Q Consensus 27 ~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 100 (248)
-+|+.++...+|.+.-.|.+++..+-....- ...+..-.+..+|+ ++.++.+|.+..+|.++++.........
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3555555556788888888887755322211 12233333333666 7778889999999998888776665554
Q ss_pred CCCCee--EEEE-e-cCCCEEEEEeCCcEEEEEccCCCC-CceeEeC--CCCCEEEEEcC--CCeEEEEE--CCceeeee
Q psy16005 101 IGGPIK--DIAW-S-PDNQRMISIVENGAKVSSLPIDYE-PSSISLD--HEHGLVAVGGA--DSKISIVE--NGAKVSSL 169 (248)
Q Consensus 101 ~~~~v~--~~~~-~-~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~--~~~~~~~~~~~--~~~i~~~~--~~~~~~~~ 169 (248)
...++. ...+ . .++...+.-.+.+..+|..+.... .....-. .....+..+.. ++.+.-+| .+......
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 111111 1111 1 234444444455888898766442 1111111 12223333433 44455455 45544443
Q ss_pred cccCCCce-----E-EEcC----CCCEEEEEcCCCcEEEEEcCCCCCCCccc
Q psy16005 170 PIDYEPSS-----I-SLDH----EHGLVAVGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 170 ~~~~~~~~-----~-~~s~----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
.....+.. . .+.. .+.-+..++.++.+...|..+++.+-...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred eeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 22111111 0 0000 11123455666777778888777654443
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.8 Score=38.07 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=85.3
Q ss_pred EEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEEC-c-------CCcEEEEEccCCeEEEEECC----CC
Q psy16005 23 LGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYS-P-------SGFYIASGDISGKVRIWDTV----NK 90 (248)
Q Consensus 23 ~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s-~-------~~~~l~~~~~dg~i~iwd~~----~~ 90 (248)
+.+-|.=...-...|+.+.+|+.+++.....+.+....|..+..- | .=++++.-..--.|.++-+. ++
T Consensus 84 mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~ 163 (1311)
T KOG1900|consen 84 MGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTG 163 (1311)
T ss_pred eccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccC
Confidence 334444444445569999999999977777777666677666542 2 22334333334456555432 11
Q ss_pred ce-e--eeeeccCCCCCeeEEEEecCCCEEEEEeCCcE--EEEEc---------------------------c----CCC
Q psy16005 91 EH-I--LKNEFHPIGGPIKDIAWSPDNQRMISIVENGA--KVSSL---------------------------P----IDY 134 (248)
Q Consensus 91 ~~-~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~--~i~~~---------------------------~----~~~ 134 (248)
+. . ....+.-....|.++....+|+.+++|.++++ .+|.. . ...
T Consensus 164 ~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 164 ELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 11 1 11222333567889998889988888877744 12211 0 123
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
++..+..+...+.+.+-+..+++..|+
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEE
Confidence 566777777778888889999999999
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=94.06 E-value=2.8 Score=34.31 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=52.4
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCC
Q psy16005 104 PIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHE 183 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~ 183 (248)
.|..+..++.|..++..+.+|+.+..++......+. -.||+-.+. .+.+..+..+..-...-.+...+|+|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~--~eDgk~~v~------CRt~~i~~~~ftss~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSE--FEDGKSTVN------CRTTPVAERFFTSSTSLTLKQAAWHPS 176 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccce--ecCCCceEE------EEeecccceeeccCCceeeeeccccCC
Confidence 455666777777777777777766665432111110 011111111 111112222222222334566789997
Q ss_pred C---CEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 184 H---GLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 184 ~---~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
. ..|..-+.|+.|++||+...+..
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcchh
Confidence 5 47777788999999999876554
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.06 E-value=2 Score=32.58 Aligned_cols=186 Identities=14% Similarity=0.195 Sum_probs=101.1
Q ss_pred eEEEEECcCCcEEEEEccCCeEEEEECC------CCceeeeeeccC-----CCCCeeEEEEecCCCE------------E
Q psy16005 61 VNVAKYSPSGFYIASGDISGKVRIWDTV------NKEHILKNEFHP-----IGGPIKDIAWSPDNQR------------M 117 (248)
Q Consensus 61 v~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~------------l 117 (248)
-+.++++|.+.+-++....+...+||.. ..+. ....++. .....+.+.|+....+ +
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~-L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDP-LVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccc-eEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4689999988888887778899999986 1222 2233331 1346778888754332 3
Q ss_pred EEEeCCc-EEEEEccCCCC---C--------------ceeEeC--CC-CCEEEEEcCCCeEEEEECCceeee--------
Q psy16005 118 ISIVENG-AKVSSLPIDYE---P--------------SSISLD--HE-HGLVAVGGADSKISIVENGAKVSS-------- 168 (248)
Q Consensus 118 ~~~~~~~-~~i~~~~~~~~---~--------------~~~~~~--~~-~~~~~~~~~~~~i~~~~~~~~~~~-------- 168 (248)
+.+++++ +.-|.-..... . +.+++. .. ..+.++--..++|.++|..-....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 4455555 35666322211 1 122222 11 224444556788888883222111
Q ss_pred -ecccCCCceEEE------------cCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-ccCCcCeEEEEEcC------CCc
Q psy16005 169 -LPIDYEPSSISL------------DHEHGLVAVGGADSKVHIYELNNKSLSPKAE-LDHLGPVTDCSFSP------SNE 228 (248)
Q Consensus 169 -~~~~~~~~~~~~------------s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~v~~~~~s~------~~~ 228 (248)
++..+.+..+.- .++++.=+.|..-|.|.+||+...- ++++. .+.-...+.|+..| .|.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 122222222211 1222222223344689999987543 33332 23344567777766 356
Q ss_pred EEEEEcCCCeEEEEECCCCC
Q psy16005 229 YLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 229 ~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|+---.||+|..||..+++
T Consensus 263 lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eEEeecCCceeEEecCCCCc
Confidence 66666679999999988764
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.011 Score=46.72 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=88.4
Q ss_pred EEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEe
Q psy16005 62 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISL 141 (248)
Q Consensus 62 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 141 (248)
....|-|.+.-++.+..+-.+..||-.... ..... .++....++|+.++..++.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n---~tg~aldm~wDkegdvlav---------------------- 91 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN---PTGKALDMAWDKEGDVLAV---------------------- 91 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC---CchhHhhhhhccccchhhh----------------------
Confidence 345677776668888888888888854332 21111 2355566777776655443
Q ss_pred CCCCCEEEEEcCCCeEEEEE-CCceeeeecccCC--CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe
Q psy16005 142 DHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYE--PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPV 218 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~--~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v 218 (248)
.+...+.+++|+ ..+..++++.... -.-+.|++.+..++.+...|.+.|++..+.+.....- .|...+
T Consensus 92 --------lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRg 162 (615)
T KOG2247|consen 92 --------LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRG 162 (615)
T ss_pred --------hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccce
Confidence 344556777777 3333333332211 1236788888899999999999999998877654442 388899
Q ss_pred EEEEEcCCCcEEEE
Q psy16005 219 TDCSFSPSNEYLVA 232 (248)
Q Consensus 219 ~~~~~s~~~~~l~~ 232 (248)
++++|.+.+..+..
T Consensus 163 tq~av~lEd~vil~ 176 (615)
T KOG2247|consen 163 TQIAVTLEDYVILC 176 (615)
T ss_pred eEEEecccceeeec
Confidence 99999998765443
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=93.89 E-value=3.7 Score=35.11 Aligned_cols=164 Identities=11% Similarity=0.088 Sum_probs=86.0
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeee--e--ecCCcceEEEEECcCCcEEEEEccCCeEEE-EECCCCce
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI--Y--TEHSCAVNVAKYSPSGFYIASGDISGKVRI-WDTVNKEH 92 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~--~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~ 92 (248)
+.+..+.|+.+..+++...+|.+++|++.. +.... . ......|..+.+..+|-.+.+. +|++.+ -+.+....
T Consensus 84 ~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 84 GELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKL 160 (829)
T ss_pred CCeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchh
Confidence 478889999999888888899999999753 32222 1 1223345555555566544443 444443 33332111
Q ss_pred eeeeeccCCCCCeeEEEEecCCC--------------EEEEEeCCcEEEEEccCC-CCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQ--------------RMISIVENGAKVSSLPID-YEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~--------------~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
-.....+....+..|.+..+++. .+.-+.........+... ..+..+..+|+.++++.-...|.+
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i 240 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKI 240 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcE
Confidence 00011111111222333222221 111111111222222233 556778899999999999999998
Q ss_pred EEEE--CCceeeeec--ccCCCceEEEcCCC
Q psy16005 158 SIVE--NGAKVSSLP--IDYEPSSISLDHEH 184 (248)
Q Consensus 158 ~~~~--~~~~~~~~~--~~~~~~~~~~s~~~ 184 (248)
.+.. ..+....+. .+..+..++|.-+.
T Consensus 241 ~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 241 WVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 8865 444444443 33344566665443
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.35 Score=40.38 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCcEEEEEcCC----CCCCC--------------ccc-------ccCCcCeEEEEEcC----CCcEEEEE
Q psy16005 183 EHGLVAVGGADSKVHIYELNN----KSLSP--------------KAE-------LDHLGPVTDCSFSP----SNEYLVAS 233 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~----~~~~~--------------~~~-------~~~~~~v~~~~~s~----~~~~l~~~ 233 (248)
+...++++..||.+....... +.... .+. .........+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556777778888877777654 11000 000 00123456667776 67899999
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
+.|+++++||+.+++
T Consensus 237 ~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQ 251 (547)
T ss_dssp ETTSEEEEEETTTTC
T ss_pred eCCCeEEEEECCCCe
Confidence 999999999999874
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.34 Score=23.91 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=19.6
Q ss_pred cCCcceEEEEECcCCcEEEEEcc-C--CeEEEE
Q psy16005 56 EHSCAVNVAKYSPSGFYIASGDI-S--GKVRIW 85 (248)
Q Consensus 56 ~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~iw 85 (248)
.....-....|||||+.|+..+. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 44556788999999988876554 4 555554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.3 Score=34.37 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=12.0
Q ss_pred CeEEEEEcCCCcEEEEEcC
Q psy16005 217 PVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~ 235 (248)
.-..|.|.|||.+.++.+.
T Consensus 115 ~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 115 NGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp -EEEEEE-TTSEEEEEEB-
T ss_pred CCccccCCCCCcEEEEeCC
Confidence 3567999999976666543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.6 Score=32.74 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=65.2
Q ss_pred cccCCcEEEEeCC-CCCEEEEeCCcE------EEEEecCC--C--ceee-----eeecCCc--------ceEEEEECcCC
Q psy16005 15 TQRGQPIVLGGDP-KGKNFLYTNGNS------VIIRNIEN--P--AISD-----IYTEHSC--------AVNVAKYSPSG 70 (248)
Q Consensus 15 ~~~~~v~~~~~s~-~~~~l~~~~~~~------v~v~~~~~--~--~~~~-----~~~~~~~--------~v~~~~~s~~~ 70 (248)
..-+.+..+.+.| ++.+++.+.++. ++.+++.. + ..+. .+....+ ...++++.+++
T Consensus 17 ~~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 17 IPFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred CccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 4567889999995 555666665555 55555443 1 1111 1111111 34478887788
Q ss_pred cEEEEEccC------CeEEEEECCCCceeeeeec-------------cCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 71 FYIASGDIS------GKVRIWDTVNKEHILKNEF-------------HPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 71 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
.++++.-.+ ..|..++.. ++......+ ...+....+++++|||+.|+++.+.
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 888877666 778888866 443222211 1234578899999999977777654
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=93.73 E-value=4.4 Score=35.49 Aligned_cols=69 Identities=22% Similarity=0.201 Sum_probs=48.9
Q ss_pred cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc----c--------------ccCCcCeEEEEEcCCCcEEEEE
Q psy16005 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA----E--------------LDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~----~--------------~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
...+.+++...-+.+++.+-.||+|.++|..+-+.+... . .+....+..++|||++-.++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 344566666667778999999999999998776443222 0 0112244568899999999998
Q ss_pred cCCCeEE
Q psy16005 234 DAHRKVV 240 (248)
Q Consensus 234 ~~d~~i~ 240 (248)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888855
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.26 Score=43.51 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCCCE--EEEeCCcEEEEEecCCCce-eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc--e
Q psy16005 18 GQPIVLGGDPKGKN--FLYTNGNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE--H 92 (248)
Q Consensus 18 ~~v~~~~~s~~~~~--l~~~~~~~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~ 92 (248)
.-..++.|+|.=.. +++-.|+.|++..+..... ...+ ......++++|+|.|+.++.|...|++.-|...-.. .
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 34567888886433 3333588888876543222 2222 345678999999999999999999999988765331 1
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEe
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
+..-.... ...|.++.|-....++++-+
T Consensus 235 ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 235 IPEPPVEE-NYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccCCCcCC-CcceeEEEEecceeEEEEec
Confidence 11111111 46789999987666665543
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.81 Score=27.52 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=33.7
Q ss_pred CeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCC
Q psy16005 155 SKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNN 203 (248)
Q Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~ 203 (248)
+.+..||.++.......-..++.+.++|++++|.+++. .+.|++|..+.
T Consensus 36 ~~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45555665444333334456789999999998887764 67899998653
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=3.5 Score=33.97 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 182 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
-++++.+.|+ .+.+||.++.+-.......+ ......+. -+++..+.|+.+ ..+..||..+.
T Consensus 406 ~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 406 FGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 4566666664 47789987765422111111 11222222 366777777643 45778887664
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.61 E-value=3.1 Score=33.39 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=103.5
Q ss_pred EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC--------------------
Q psy16005 31 NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-------------------- 89 (248)
Q Consensus 31 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------------------- 89 (248)
+++.-+ ||.+.+++-+.....+.+.. ---...+.+.+.-..+++++.+..+.-|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 344445 99999999665544444433 12223466778778899999888888886421
Q ss_pred Ccee---eeeeccCCCCCeeEEE---EecCC--------CEEEEEeCCcEEEEEccCCCCCceeEe-------CCC-CCE
Q psy16005 90 KEHI---LKNEFHPIGGPIKDIA---WSPDN--------QRMISIVENGAKVSSLPIDYEPSSISL-------DHE-HGL 147 (248)
Q Consensus 90 ~~~~---~~~~~~~~~~~v~~~~---~~~~~--------~~l~~~~~~~~~i~~~~~~~~~~~~~~-------~~~-~~~ 147 (248)
++.+ +...+ ...+..+. ++... +.|++-.++|...|..+.+..+.++.. .+. +..
T Consensus 226 ~k~l~~dWs~nl---GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~ 302 (418)
T PF14727_consen 226 GKKLNPDWSFNL---GEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLN 302 (418)
T ss_pred cccccceeEEEC---CceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceE
Confidence 0000 00111 12333333 22222 233444456666666677777666642 122 125
Q ss_pred EEEEcCCCeEEEEECCceeeeecccCCCceEEEcC---CCCEEEEEcCCCcEEEEEcCCC
Q psy16005 148 VAVGGADSKISIVENGAKVSSLPIDYEPSSISLDH---EHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
+++++.++.+.+|...+.++.......+.++.... -...|++-+.+|.+.+-=+.|.
T Consensus 303 llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 303 LLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 88899999999999999988888777776665543 2337777788999988777654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.99 Score=36.07 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=89.6
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC-CCc----------------eeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 100 PIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY-EPS----------------SISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.....+..+-..|||+.++.-+.....++++.... ... .+..-..+.-+.+++.||.+.-|-
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 33467788889999999999888888888775321 111 111223456678889999998874
Q ss_pred ---CCce----eeeeccc-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 162 ---NGAK----VSSLPID-YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 162 ---~~~~----~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.+.. ++.+... .++..+.-..+.+-++.-+.+|.+..+.....+..... .--..+.-+++||++.++++-
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~~Ll~e 375 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQAYLLSE 375 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccchheee
Confidence 1211 1111111 12222222234456777788888888876555443221 222356778999999998876
Q ss_pred cCCCeEEEEECCCC
Q psy16005 234 DAHRKVVLYRVPDF 247 (248)
Q Consensus 234 ~~d~~i~vw~~~~~ 247 (248)
. .|+++++.+++.
T Consensus 376 ~-~gki~~~~l~Nr 388 (733)
T COG4590 376 D-QGKIRLAQLENR 388 (733)
T ss_pred c-CCceEEEEecCC
Confidence 4 578999988763
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.4 Score=28.87 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCCeEEEEEC----------CceeeeecccCCCceEEEcC-----CCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 142 DHEHGLVAVGGADSKISIVEN----------GAKVSSLPIDYEPSSISLDH-----EHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~s~-----~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
......|+.++..++|.+++. ...+..+.....+++++-.| +...|+.|+. ..+..||+.....
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d 85 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSD 85 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCch
Confidence 334445555556666666651 12344555566666665433 3447777775 4699999988776
Q ss_pred CCcccccCCcCeEEEEEc
Q psy16005 207 SPKAELDHLGPVTDCSFS 224 (248)
Q Consensus 207 ~~~~~~~~~~~v~~~~~s 224 (248)
+... .-...|+++.+-
T Consensus 86 ~Fyk--e~~DGvn~i~~g 101 (136)
T PF14781_consen 86 LFYK--EVPDGVNAIVIG 101 (136)
T ss_pred hhhh--hCccceeEEEEE
Confidence 4322 334567777663
|
|
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=93.42 E-value=5.5 Score=35.56 Aligned_cols=178 Identities=10% Similarity=0.101 Sum_probs=92.6
Q ss_pred CcceEEEEECcCC------cEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec---CC------CEEEEEeC
Q psy16005 58 SCAVNVAKYSPSG------FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP---DN------QRMISIVE 122 (248)
Q Consensus 58 ~~~v~~~~~s~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~------~~l~~~~~ 122 (248)
...+.|+++.++. ++++.++.|+++++..+.....+.....++-..++.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 5568899988754 679999999999999998766665566666566666666543 22 24555666
Q ss_pred CcEEEEE-cc--C------------CCCCc--eeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCC--CceEEE--c
Q psy16005 123 NGAKVSS-LP--I------------DYEPS--SISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYE--PSSISL--D 181 (248)
Q Consensus 123 ~~~~i~~-~~--~------------~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~--s 181 (248)
+|+.+.. ++ . -.++. .+....+...++..+.+...+.++.......+..... ..+++- +
T Consensus 662 NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~~s~vL~lSsr~wl~y~~~~~~h~t~Isy~~l~~as~~~S~qc 741 (1205)
T KOG1898|consen 662 NGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRGQSDVLALSSRPWLLYTYQQEFHLTPISYSTLEHASPFCSEQC 741 (1205)
T ss_pred ccEEEEEEecccccceeeeheeeeccccceEEEEeecCcceeEEecCChhhhhhhcceeeeecccccchhccccccccCC
Confidence 6653222 11 0 01111 1223334445555555444443332222222211100 111111 1
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCC-CCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 182 HEHGLVAVGGADSKVHIYELNNK-SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 182 ~~~~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
|.| ++..+ ...+++.-+... +........+...++.+..+|..+.|+.+..|..
T Consensus 742 peG--iv~i~-~n~l~i~~~~~~g~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~ 796 (1205)
T KOG1898|consen 742 PEG--IVAIS-KNTLRIIALDKLGKVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHN 796 (1205)
T ss_pred Ccc--hhhhh-hhhhheeeehhhcccccccccccccCcceEEEecCCCeEEEEEeccc
Confidence 222 22222 234555544332 3322233356667888889998888887766543
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.6 Score=35.60 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=48.9
Q ss_pred CCCceEEEcCCCCEEEEEcCCCcEEEEEc---------CCCCCCCc----------ccccCCcCeEEEEEcCCC---cEE
Q psy16005 173 YEPSSISLDHEHGLVAVGGADSKVHIYEL---------NNKSLSPK----------AELDHLGPVTDCSFSPSN---EYL 230 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~~~d~~v~i~d~---------~~~~~~~~----------~~~~~~~~v~~~~~s~~~---~~l 230 (248)
..+..+..++.|..++.++.+|.+..+=. +.++.... +.....-.+..++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 34566778999999999998985444321 12221110 111122346788999986 678
Q ss_pred EEEcCCCeEEEEECCCC
Q psy16005 231 VASDAHRKVVLYRVPDF 247 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~ 247 (248)
..-+.|+.|++|++...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88888999999998653
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.13 E-value=2.9 Score=31.57 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=83.0
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEccCCCCC
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV-ENGAKVSSLPIDYEP 136 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~ 136 (248)
.+-+..+.++. ++.+.+..+.-++|.|+.+........+-...+.- -.|.-.|++..++. +++..+.++..+..+
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gya--ygv~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYA--YGVYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceE--EEEEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 34456677764 56777777788999999887654222222112223 33444688888887 888899998766554
Q ss_pred ceeEe-----------CCCCCEEEEEcCCCeEEEEEC-----CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 137 SSISL-----------DHEHGLVAVGGADSKISIVEN-----GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 137 ~~~~~-----------~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
.-... .-.|++-..+..|+-+.+.|- ...+..........++..+++..+++... --+.+-|
T Consensus 162 ~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd 239 (370)
T COG5276 162 QLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVD 239 (370)
T ss_pred eeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEe
Confidence 32211 112444555567777888771 12222333333456666776665655543 2366666
Q ss_pred cCCCCC
Q psy16005 201 LNNKSL 206 (248)
Q Consensus 201 ~~~~~~ 206 (248)
..+.+.
T Consensus 240 ~s~~ss 245 (370)
T COG5276 240 VSGPSS 245 (370)
T ss_pred cCCCCC
Confidence 665553
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=93.10 E-value=3.9 Score=33.00 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=24.1
Q ss_pred CceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 175 PSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
+..++..+..+.+++.+.+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 67788888889999999999999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.3 Score=26.89 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=27.9
Q ss_pred EcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 190 GGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 190 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
+..+|.+.-||..+++..... ..-.-.+.++++||+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~--~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLL--DGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEE--EEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEeh--hCCCccCeEEEcCCCCEEEEE
Confidence 445788999999998763222 223356899999999988776
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=5.4 Score=33.34 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCcEEEEEccCC------eEEEEECCCCce
Q psy16005 69 SGFYIASGDISG------KVRIWDTVNKEH 92 (248)
Q Consensus 69 ~~~~l~~~~~dg------~i~iwd~~~~~~ 92 (248)
++..++.|+.++ .+..||..+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W 323 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee
Confidence 556677776542 467788877664
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=4.1 Score=31.76 Aligned_cols=216 Identities=8% Similarity=0.022 Sum_probs=103.1
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee----cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT----EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
...+.++.|..+.+-++++.++.|..= .+.++.=+... .....+.++.|.++ ..+++ +..|.| +..+++..
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCCC
Confidence 457889999876777778877655432 13332211111 12234678888654 33444 344443 33333221
Q ss_pred eeeee-cc-CCCCCeeEEEEecCCCEEEEEeC-------CcEEEEEc---cCCCCCceeEeCCCCCEEEEEcCCCeEEE-
Q psy16005 93 ILKNE-FH-PIGGPIKDIAWSPDNQRMISIVE-------NGAKVSSL---PIDYEPSSISLDHEHGLVAVGGADSKISI- 159 (248)
Q Consensus 93 ~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~-------~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 159 (248)
..... .. ........+.....+..++++.. |+-+-|.. .....+..+.+.+++.+++++.. |.+..
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s 198 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFYST 198 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEEEE
Confidence 11111 10 01112222222222222332221 11122332 12334567778888766655444 54443
Q ss_pred EECC-ceeeee--cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc---CCcCeEEEEEcCCCcEEEEE
Q psy16005 160 VENG-AKVSSL--PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD---HLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 160 ~~~~-~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~ 233 (248)
++.+ +.-... .....+..+.+.|+++.+++|. .|.+++=..+.+..-.....+ ....+.++.+.|+++.++++
T Consensus 199 ~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G 277 (334)
T PRK13684 199 WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG 277 (334)
T ss_pred cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc
Confidence 4433 222222 2344578889999998777654 565543223333321111111 22357889999988765554
Q ss_pred cCCCeEE
Q psy16005 234 DAHRKVV 240 (248)
Q Consensus 234 ~~d~~i~ 240 (248)
.+|.+.
T Consensus 278 -~~G~v~ 283 (334)
T PRK13684 278 -GNGTLL 283 (334)
T ss_pred -CCCeEE
Confidence 455544
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.43 E-value=6 Score=33.47 Aligned_cols=182 Identities=14% Similarity=0.165 Sum_probs=95.0
Q ss_pred ceEEEEECcCCcEEEEE-----ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----EEEEEc
Q psy16005 60 AVNVAKYSPSGFYIASG-----DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----AKVSSL 130 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~~i~~~ 130 (248)
.+-.++.|||.+++|-+ +..-++++-|+.+++.... .-.+....++|.+|++.|+....+. -++|..
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d----~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h 205 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD----EITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRH 205 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch----hhcccccceEEecCCCeEEEEEEcCCCCcceEEEE
Confidence 46678889999988754 3334799999999885421 1234567789999999888776443 267766
Q ss_pred cCCC--CCceeEeC-C------------CCCEEEEEc---CCCeEEEEECCce----eeeecccCCCceEEEcC--CCC-
Q psy16005 131 PIDY--EPSSISLD-H------------EHGLVAVGG---ADSKISIVENGAK----VSSLPIDYEPSSISLDH--EHG- 185 (248)
Q Consensus 131 ~~~~--~~~~~~~~-~------------~~~~~~~~~---~~~~i~~~~~~~~----~~~~~~~~~~~~~~~s~--~~~- 185 (248)
..+. ....+.+. + .+++++... ....+++.+.... ....+. ...+.++. .+.
T Consensus 206 ~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr---~~g~eY~~eh~~d~ 282 (682)
T COG1770 206 RLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPR---ENGVEYSVEHGGDR 282 (682)
T ss_pred ecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEc---CCCcEEeeeecCcE
Confidence 5554 33333222 2 223333222 1223444441111 111111 12222222 233
Q ss_pred EEEEEcCCC-cEEEEEcCC--CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC---CeEEEEECCCCC
Q psy16005 186 LVAVGGADS-KVHIYELNN--KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH---RKVVLYRVPDFE 248 (248)
Q Consensus 186 ~l~~~~~d~-~v~i~d~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~vw~~~~~~ 248 (248)
+++....+| ..+|+.... .+.--.....|...+.--.|+--..+|+....+ ..|++++.++++
T Consensus 283 f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~ 351 (682)
T COG1770 283 FYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGE 351 (682)
T ss_pred EEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCc
Confidence 444444455 455655443 111111223566666655666666777766433 467788877654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=4.9 Score=32.18 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=58.1
Q ss_pred eEeCCCCCEEEEEcCCCeEEEEECCcee---eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-----CCcc
Q psy16005 139 ISLDHEHGLVAVGGADSKISIVENGAKV---SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL-----SPKA 210 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~-----~~~~ 210 (248)
+...+++.+++.+.....++-||.+... ...+....+..+.+.+++.+++++. .|.+. +....++. ....
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l~-~S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGLY-VSKGTGLTEEDFDFEEA 321 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeC-CceEE-EecCCCCcccccceeec
Confidence 3456777777776665555557766543 2333455678899999998877664 55443 33333321 1111
Q ss_pred ccc-CCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 211 ELD-HLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 211 ~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
... ....+.++.|.+++..+++| ..|.+..
T Consensus 322 ~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~ 352 (398)
T PLN00033 322 DIKSRGFGILDVGYRSKKEAWAAG-GSGILLR 352 (398)
T ss_pred ccCCCCcceEEEEEcCCCcEEEEE-CCCcEEE
Confidence 111 22358899999888766655 4555544
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.41 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.3
Q ss_pred cCCcEEEEeCCCCCEEEEeC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN 36 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~ 36 (248)
.+.-....|||||+.|+.++
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEE
T ss_pred CccccCEEEecCCCEEEEEe
Confidence 34567889999999999875
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.11 E-value=5.6 Score=32.39 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=37.9
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeecc-----CCCCCeeEEEEecCC
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH-----PIGGPIKDIAWSPDN 114 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 114 (248)
...+.++|.||+++|++--..|.|++++..++.......+. ........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45688999999987777554699999986654322111111 125678899999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.09 E-value=2.3 Score=27.92 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=53.5
Q ss_pred EEeCCCCCEEEEeC-CcEEEEEecCCCc--------eeeeeecCCcceEEEEECc-----CCcEEEEEccCCeEEEEECC
Q psy16005 23 LGGDPKGKNFLYTN-GNSVIIRNIENPA--------ISDIYTEHSCAVNVAKYSP-----SGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 23 ~~~s~~~~~l~~~~-~~~v~v~~~~~~~--------~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~ 88 (248)
-.|......|+++. .++|.|++..... .++.+ .-+..|++++-.+ +...|+.|+. ..+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 45666666777765 8899999866432 23333 3456677775544 3467777765 578999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEe
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWS 111 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~ 111 (248)
....+....+ .+.+.++.+-
T Consensus 82 ~N~d~Fyke~---~DGvn~i~~g 101 (136)
T PF14781_consen 82 NNSDLFYKEV---PDGVNAIVIG 101 (136)
T ss_pred cCchhhhhhC---ccceeEEEEE
Confidence 8765533333 3667777664
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=91.93 E-value=8.6 Score=34.15 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=104.3
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee-ecCCcceEEEEECcC--C----cEEEEEccCCeEEEEEC-CC
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS--G----FYIASGDISGKVRIWDT-VN 89 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iwd~-~~ 89 (248)
.++....+.+...++.+. ++.+...++..+...... ......|.|+.++|- + ++++.|..+..+.+.-. .+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 334344444444455444 566666666554422211 133567999999983 2 37888888776554433 33
Q ss_pred CceeeeeeccC--CCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC-------------CCCC-ceeEeCCCCCEEEEEc
Q psy16005 90 KEHILKNEFHP--IGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI-------------DYEP-SSISLDHEHGLVAVGG 152 (248)
Q Consensus 90 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~-------------~~~~-~~~~~~~~~~~~~~~~ 152 (248)
........+.. -+..|.-.++-.|..+|.++..+|. ..+.++. +..+ .--.|+..++.-+.+.
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe
Confidence 33222121221 1233444455556788999888886 3333321 2222 2234555555555556
Q ss_pred CCCeEEEEECCceeeeecccCC-Cc-eEEEcC-CC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 153 ADSKISIVENGAKVSSLPIDYE-PS-SISLDH-EH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 153 ~~~~i~~~~~~~~~~~~~~~~~-~~-~~~~s~-~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
.|....+|-....+.-.+.... +. -..|+. .. ..++.+. .+.+.+.-++.-+.......+-...++.+++.+...
T Consensus 649 sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl 727 (1096)
T KOG1897|consen 649 SDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSL 727 (1096)
T ss_pred CCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccce
Confidence 6666666653333322222111 11 112222 11 2444444 445777766543322222223345567777777444
Q ss_pred EEEEE
Q psy16005 229 YLVAS 233 (248)
Q Consensus 229 ~l~~~ 233 (248)
.+.+.
T Consensus 728 ~~~v~ 732 (1096)
T KOG1897|consen 728 TFGVL 732 (1096)
T ss_pred EEEEE
Confidence 44443
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=91.32 E-value=8.2 Score=35.35 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=48.9
Q ss_pred cCCCceEEEcCCCCEEEEEcCCCcEEEEEcC----CC---C-C-------------CC---cccccCCcCeEEEEEcCCC
Q psy16005 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELN----NK---S-L-------------SP---KAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~----~~---~-~-------------~~---~~~~~~~~~v~~~~~s~~~ 227 (248)
...++|+....+|+.+++|-. | .+|.+. .+ + + ++ .....+..+|..+.....-
T Consensus 178 g~~V~~I~~t~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 345688887888887777654 4 344431 11 0 0 01 1111357799999998888
Q ss_pred cEEEEEcCCCeEEEEECCC
Q psy16005 228 EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~ 246 (248)
..+++-+..|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8889999999999999865
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.05 Score=43.29 Aligned_cols=102 Identities=11% Similarity=0.144 Sum_probs=71.2
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeee-ee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDI-YT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+....++|..++..++... .+.+++|++.+....+. +. .|... -+.|++....++.+...|.+.|++..+.+
T Consensus 73 ~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 73 PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHH--HHhhccCCccccccccccceEEEeccchh
Confidence 345666788888888776653 78999999876432211 11 22222 27799988889999999999999988766
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
.. .....|...+.++++.+.+..+....
T Consensus 151 ~i--iv~Gkh~RRgtq~av~lEd~vil~dc 178 (615)
T KOG2247|consen 151 RI--IVMGKHQRRGTQIAVTLEDYVILCDC 178 (615)
T ss_pred hh--hhhcccccceeEEEecccceeeecCc
Confidence 43 23334788899999999876655443
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.14 E-value=2.7 Score=35.20 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=27.0
Q ss_pred ceEEEEECc----CCcEEEEEccCCeEEEEECCCCceee
Q psy16005 60 AVNVAKYSP----SGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 60 ~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...++++++ +..++++.+.|+++|+||+.+++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 455666666 67899999999999999999998743
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=7.2 Score=32.72 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD- 213 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~- 213 (248)
.+.+.+.++++..++....++.+.++..+.....+..........|+++| ++-+.-.....++...............
T Consensus 335 ~~~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 335 QADAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred ccccceEcCCCceEEEEcCCceEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Q ss_pred -CCcCeEEEEEcCCCcEEEEEcC---CCeEEE
Q psy16005 214 -HLGPVTDCSFSPSNEYLVASDA---HRKVVL 241 (248)
Q Consensus 214 -~~~~v~~~~~s~~~~~l~~~~~---d~~i~v 241 (248)
-...|..+..|+||-.++.... .+.|.+
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~v 445 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGAGPQLLV 445 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCCCCEEEE
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=90.92 E-value=8.3 Score=32.04 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=96.0
Q ss_pred CcEEEEeCCCC-CEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcC----Cc------EEEEEc---cCCe
Q psy16005 19 QPIVLGGDPKG-KNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS----GF------YIASGD---ISGK 81 (248)
Q Consensus 19 ~v~~~~~s~~~-~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~~~~---~dg~ 81 (248)
...++.+-.+| .+++.|+ |+.+..+.....+....+. .-++|.+++..+. .. .|++++ .+|.
T Consensus 257 ~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gs 335 (504)
T PF10433_consen 257 IASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGS 335 (504)
T ss_dssp -ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-E
T ss_pred hhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCc
Confidence 34456665555 3454443 6777777755555555553 4578888888531 11 455543 5688
Q ss_pred EEEEECCCCc---eeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCcEEEEEccC---CCCCcee---EeCCCCCEEEEE
Q psy16005 82 VRIWDTVNKE---HILKNEFHPIGGPIKDIAWSP-DNQRMISIVENGAKVSSLPI---DYEPSSI---SLDHEHGLVAVG 151 (248)
Q Consensus 82 i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~i~~~~~---~~~~~~~---~~~~~~~~~~~~ 151 (248)
+++..-.-+- ......+++ -..++.+.... ++.+++.+..+..++..+.. ...+..+ .|..+...++++
T Consensus 336 L~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~ 414 (504)
T PF10433_consen 336 LRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAG 414 (504)
T ss_dssp EEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEE
T ss_pred EEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEE
Confidence 8887532111 111112221 22333443322 26788888888888888852 2222111 445556666665
Q ss_pred cC-CCe--------EEEEE--CCceeeee--cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc----cC
Q psy16005 152 GA-DSK--------ISIVE--NGAKVSSL--PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL----DH 214 (248)
Q Consensus 152 ~~-~~~--------i~~~~--~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~----~~ 214 (248)
.- ++. |++.+ ..+..... +....+.+.+.+ +..++.+..++.+..+.+........... ..
T Consensus 415 ~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (504)
T PF10433_consen 415 NVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILEL 492 (504)
T ss_dssp EETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-
T ss_pred EcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccC
Confidence 54 332 34444 22222222 223334444443 45677777788888988877655322211 13
Q ss_pred CcCeEEEEEcC
Q psy16005 215 LGPVTDCSFSP 225 (248)
Q Consensus 215 ~~~v~~~~~s~ 225 (248)
...|.++...|
T Consensus 493 ~~eis~l~i~p 503 (504)
T PF10433_consen 493 DNEISCLSIEP 503 (504)
T ss_dssp SS-EEEEE---
T ss_pred CCceEEEEeCC
Confidence 56788887766
|
... |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.91 E-value=6.3 Score=30.62 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=41.4
Q ss_pred cCCCceEEEcCCCCEEEEEcC-----CC--c-------EEEE--EcCC-CCCCCccc--cc------CCcCeEEEEEcCC
Q psy16005 172 DYEPSSISLDHEHGLVAVGGA-----DS--K-------VHIY--ELNN-KSLSPKAE--LD------HLGPVTDCSFSPS 226 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~-----d~--~-------v~i~--d~~~-~~~~~~~~--~~------~~~~v~~~~~s~~ 226 (248)
......++++|+|+.|+++.+ |+ . ++|+ |..+ ++....+. .. ....|..+.+-++
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d 225 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD 225 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC
Confidence 334578999999996666543 22 1 4554 4444 21211111 11 3467899999999
Q ss_pred CcEEEEEc-----CCCeEEEEEC
Q psy16005 227 NEYLVASD-----AHRKVVLYRV 244 (248)
Q Consensus 227 ~~~l~~~~-----~d~~i~vw~~ 244 (248)
+++|+.=- ....++|+.+
T Consensus 226 ~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 226 GRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred CcEEEEEccCCCCccceEEEEEE
Confidence 99776531 2345555544
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.41 E-value=11 Score=32.87 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=47.8
Q ss_pred CceeEeCCCCCEEEEEcCCC-----eEEEEEC-----CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 136 PSSISLDHEHGLVAVGGADS-----KISIVEN-----GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~-----~i~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
...++|.|+|..+++-..|| .+.++.. |+.-............+|+-....++++. .+.+.+|-..+-.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyh 327 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYH 327 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceE
Confidence 34578889999888766443 3555552 22211222333345666766555555543 4579999876643
Q ss_pred CCCcccccCCcCeEEEEEcCCC
Q psy16005 206 LSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 206 ~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
--.... -.-..+.-+.|+|..
T Consensus 328 WYLK~e-~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 328 WYLKVE-RQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEEe-ecCCCcceeeecccc
Confidence 211111 112234556777754
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=90.22 E-value=3.8 Score=36.05 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=52.5
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEE-EccCC-----eEEEEECCCCceeeeeeccCCCCCeeEEEEe
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISG-----KVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 111 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 111 (248)
+.+.+-|.+.......-..+..+|.+.+|||||+.|+- .+.++ .|.+-|+.+...-. ..+.-.+..|..-...
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~-vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGL-VKLPVENAAIPRWRVL 407 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCc-eEeecccccccceEec
Confidence 57888887765555431356889999999999999987 44444 48888887654211 2333335666666677
Q ss_pred cCCCEEE
Q psy16005 112 PDNQRMI 118 (248)
Q Consensus 112 ~~~~~l~ 118 (248)
++|...+
T Consensus 408 e~gdt~i 414 (912)
T TIGR02171 408 ENGDTVI 414 (912)
T ss_pred CCCCeEE
Confidence 7665443
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.18 E-value=13 Score=32.91 Aligned_cols=75 Identities=7% Similarity=0.193 Sum_probs=48.6
Q ss_pred cCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCC----CCcccccC----------CcCeEEEEEcCCCcEEEEEcCC
Q psy16005 172 DYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSL----SPKAELDH----------LGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 172 ~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~d 236 (248)
..+...++|+| +.+.||+....|...||++..... .......+ ...-..+.|.++-..|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 34457899998 445899999999999999922111 00111011 122347889888777777764
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
..+.++|+++.
T Consensus 224 ~~l~~~d~~~~ 234 (765)
T PF10214_consen 224 SKLMLIDFESN 234 (765)
T ss_pred CceEEEECCCC
Confidence 47788888764
|
These proteins are found in fungi. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=89.72 E-value=7.3 Score=29.52 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=53.0
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc------cCCeEEEEECCCCceeeeee-c-cCCCCCeeEE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD------ISGKVRIWDTVNKEHILKNE-F-HPIGGPIKDI 108 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~-~-~~~~~~v~~~ 108 (248)
-..|++||..+.+-...-.+-.+.|+++.|..+.++++.|. ....+..||..+........ . ..-.+++..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 35799999887766655555678899999987777777764 35578899988776421111 0 1124677777
Q ss_pred EEec-CCCEEE
Q psy16005 109 AWSP-DNQRMI 118 (248)
Q Consensus 109 ~~~~-~~~~l~ 118 (248)
.+.. |+..+.
T Consensus 95 ~~~~~d~~~~~ 105 (281)
T PF12768_consen 95 TFISNDGSNFW 105 (281)
T ss_pred EeeccCCceEE
Confidence 7643 343344
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=89.52 E-value=16 Score=33.25 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=25.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN 47 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~ 47 (248)
.......++|+|...+++.+. .|.+.++-...
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 334677899999999999997 89999887543
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=89.39 E-value=10 Score=30.69 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=64.3
Q ss_pred eEEEEecCCCEEEEEeCCcEEEEEccCCCC----CceeEeC-C-----CCCEEEEEcCCCeEEEEECCce------eee-
Q psy16005 106 KDIAWSPDNQRMISIVENGAKVSSLPIDYE----PSSISLD-H-----EHGLVAVGGADSKISIVENGAK------VSS- 168 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~----~~~~~~~-~-----~~~~~~~~~~~~~i~~~~~~~~------~~~- 168 (248)
..+...|.-.+.....++.+.+|++..... ...+... + .-...++....|.|..|+.-.. ...
T Consensus 29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v~lv~p~~G~v~f~~~I~~~l~~~t~~~i 108 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGVGLVKPKTGRVVFWESISHLLVLATPSQI 108 (422)
T ss_dssp -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SEEEEE-TT-EEEEES-TT-TT--EEEE--
T ss_pred eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceEEEEEcCCCCEEecccchhhhhcCccccc
Confidence 445556777788888899999999842211 1111111 1 1234556677899999982110 011
Q ss_pred ----------ecccC--------CCceEEEcCCCCEEEEEcCC-CcEEEEEcCCCCC-----------C-Ccccc--cC-
Q psy16005 169 ----------LPIDY--------EPSSISLDHEHGLVAVGGAD-SKVHIYELNNKSL-----------S-PKAEL--DH- 214 (248)
Q Consensus 169 ----------~~~~~--------~~~~~~~s~~~~~l~~~~~d-~~v~i~d~~~~~~-----------~-~~~~~--~~- 214 (248)
+..+. ....+.-..+|+.+..+..| +.+.-........ . ..... ..
T Consensus 109 ~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~ 188 (422)
T PF08801_consen 109 SLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDP 188 (422)
T ss_dssp ----------------EEEEEEETTTEEEEETT--EEEEEE-TTS-EEEEE-TT--------------------------
T ss_pred cccccceeeecCCceEEECCCCceEEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcccc
Confidence 00000 11234444566666665544 1121112211110 0 01110 11
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
...|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 33499999999999999999999999999863
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.94 E-value=10 Score=30.11 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=52.4
Q ss_pred ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC-Cccc-----ccCCcCeEEEEEc--CCC-cEEEEEc
Q psy16005 164 AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS-PKAE-----LDHLGPVTDCSFS--PSN-EYLVASD 234 (248)
Q Consensus 164 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~-~~~~-----~~~~~~v~~~~~s--~~~-~~l~~~~ 234 (248)
+.++.+.....+..++.+.....|+.+-++--|.-|+.+..... .... ......|..+++- +++ .||+.++
T Consensus 199 ~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSs 278 (381)
T PF02333_consen 199 TLVREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSS 278 (381)
T ss_dssp EEEEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEE
T ss_pred EEEEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEc
Confidence 35677777778888888888889999999988888887643211 1111 1134567777774 344 3555554
Q ss_pred -CCCeEEEEECCC
Q psy16005 235 -AHRKVVLYRVPD 246 (248)
Q Consensus 235 -~d~~i~vw~~~~ 246 (248)
.++...||+.+.
T Consensus 279 QG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 279 QGDNSFAVYDREG 291 (381)
T ss_dssp GGGTEEEEEESST
T ss_pred CCCCeEEEEecCC
Confidence 567899999753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.45 E-value=7.4 Score=27.93 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=47.8
Q ss_pred CCCEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEE-EccCCeEEEEECCCCceeeeeeccCCCC
Q psy16005 28 KGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIAS-GDISGKVRIWDTVNKEHILKNEFHPIGG 103 (248)
Q Consensus 28 ~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (248)
+|.++.+.+ ...|++||+.+++......--...+..=-...-+..+.. .-.+|.-.++|.++-+.+-.+.+++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G--- 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG--- 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC---
Confidence 344444443 468999999998876544322222222111122333322 2457788888888776554444432
Q ss_pred CeeEEEEecCCCEEEEEeCCc
Q psy16005 104 PIKDIAWSPDNQRMISIVENG 124 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~~ 124 (248)
.=+.+ ..|++.|+.+....
T Consensus 132 eGWgL--t~d~~~LimsdGsa 150 (262)
T COG3823 132 EGWGL--TSDDKNLIMSDGSA 150 (262)
T ss_pred cceee--ecCCcceEeeCCce
Confidence 22333 33555555544333
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.94 E-value=5 Score=34.78 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=29.8
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcC
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS 69 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~ 69 (248)
+..++|+-....++.+..+.+.+|-..+-.-.....-.-..+.-+.|+|.
T Consensus 298 ~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 298 AFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred hhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 34455555555555556788999986654333222233445778899994
|
|
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=87.31 E-value=22 Score=32.11 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCeEEEEE---CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCc
Q psy16005 154 DSKISIVE---NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNE 228 (248)
Q Consensus 154 ~~~i~~~~---~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 228 (248)
+|.++.|+ .++.+.-+. ...+-.-.++.|-+.++++|- ...+++||+...+..+.....+ ...|+.+++ .+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cce
Confidence 34455554 565333322 122223456777666666655 4579999998877655444333 344555554 233
Q ss_pred EEEEEc
Q psy16005 229 YLVASD 234 (248)
Q Consensus 229 ~l~~~~ 234 (248)
.++.|.
T Consensus 988 RI~VgD 993 (1205)
T KOG1898|consen 988 RIVVGD 993 (1205)
T ss_pred EEEEee
Confidence 444443
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.17 E-value=21 Score=31.63 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=91.1
Q ss_pred cCCcceEEEEEC---c----CCcEEEEEccCCeEEEEECCCCce----------e---eeeecc---CCCCCeeEEEEec
Q psy16005 56 EHSCAVNVAKYS---P----SGFYIASGDISGKVRIWDTVNKEH----------I---LKNEFH---PIGGPIKDIAWSP 112 (248)
Q Consensus 56 ~~~~~v~~~~~s---~----~~~~l~~~~~dg~i~iwd~~~~~~----------~---~~~~~~---~~~~~v~~~~~~~ 112 (248)
....+|..|+|. . ..++|++-. ...+.|+...-.+. + ....+. ....+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 224555543 45677776221111 0 001111 1123566788887
Q ss_pred -CCCEEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEE
Q psy16005 113 -DNQRMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVG 190 (248)
Q Consensus 113 -~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 190 (248)
+.+.||.....|. .+|++........ ..+-+.....|.| +.|..+. ..-..+.|.++...|++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~------~~~~~~~~~~gsi-~~d~~e~-------s~w~rI~W~~~~~~lLv~ 221 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKS------SNLRLSRNISGSI-IFDPEEL-------SNWKRILWVSDSNRLLVC 221 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCC------cceeeccCCCccc-cCCCccc-------CcceeeEecCCCCEEEEE
Confidence 4456777776665 7787721111100 0111122222333 2221111 223467888888888887
Q ss_pred cCCCcEEEEEcCCCCCCC-cccccCCcCeEEEEEcCCC--cEEEEEcCCCeEEEEECCC
Q psy16005 191 GADSKVHIYELNNKSLSP-KAELDHLGPVTDCSFSPSN--EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 191 ~~d~~v~i~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~vw~~~~ 246 (248)
+.. .+.++|+++..... .........|.++.-+|+. ..++..+ ..|...++.+
T Consensus 222 ~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred cCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 754 58999999876643 2332355678999888873 3333222 3565555543
|
These proteins are found in fungi. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.29 E-value=2.8 Score=20.74 Aligned_cols=31 Identities=10% Similarity=0.427 Sum_probs=17.7
Q ss_pred EEcCCCeEEEEE--CCceeeeecccCCCceEEE
Q psy16005 150 VGGADSKISIVE--NGAKVSSLPIDYEPSSISL 180 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~ 180 (248)
+...++.|.++| .++.+..+.....+..+++
T Consensus 9 ~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 9 TNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 344567777777 4445555555555555554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=86.28 E-value=13 Score=28.50 Aligned_cols=71 Identities=7% Similarity=0.093 Sum_probs=51.1
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCc-ce----EEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSC-AV----NVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-~v----~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
-.++++...++|.+|+++. -..|.+.+-.+++.+-.+.+... .. ...++-.+-+++-.+..++.|.++|=.
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 4578889999999999986 67899999899998887765422 11 113333455566566788999999863
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=86.06 E-value=30 Score=32.35 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCcCeEEEEEcCCCcEEEEEc
Q psy16005 214 HLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 214 ~~~~v~~~~~s~~~~~l~~~~ 234 (248)
|-..+.+++.+|||..+++-.
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred ccCCcceEEECCCCcEEEecC
Confidence 456688899999998666543
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=85.99 E-value=21 Score=30.51 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=101.7
Q ss_pred CcEEEEeCCCCCEEEEeC-Cc-EEEEEecCCCce----e-eeeecCCcceEEEEECcCCcEEEEEcc--CC--eEEEEEC
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GN-SVIIRNIENPAI----S-DIYTEHSCAVNVAKYSPSGFYIASGDI--SG--KVRIWDT 87 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~-~v~v~~~~~~~~----~-~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg--~i~iwd~ 87 (248)
.+.+.+.++++..++... ++ .+++..+..+.. . ..+. ...++...|.+++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence 677899999999888775 33 666665533332 1 1222 3457777888877 4555432 22 2555553
Q ss_pred CCCceeeeeeccCCCC-CeeEEEEecCCCEEEEEeCC--cEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc
Q psy16005 88 VNKEHILKNEFHPIGG-PIKDIAWSPDNQRMISIVEN--GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA 164 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (248)
+++... .......+ .|..+..++||..++...+. +-+++-- .+.-..+|.+.+-+
T Consensus 441 -~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va-----------------~V~R~~~G~~~l~~--- 498 (599)
T PRK13613 441 -DGEPVE-VRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIG-----------------RIVRDAKAVVSVEE--- 498 (599)
T ss_pred -CCcEEE-eeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEE-----------------EEEeCCCCcEEeec---
Confidence 444321 22222233 79999999999888775532 1111110 01112233322211
Q ss_pred eeeeecccCCCceEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEcCCCeE
Q psy16005 165 KVSSLPIDYEPSSISLDHEHGLVAVGGA---DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASDAHRKV 239 (248)
Q Consensus 165 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i 239 (248)
....-..-..+..++|..++.+++.+.. +..++..++.......... ..-..+..++-..+.+ .++.+..++.|
T Consensus 499 ~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~-~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 499 FRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPASAP-AAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred cEEeccCCCccceeEEcCCCEEEEEeccCCCCcceEEEecCCcCcccccc-cCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 1111111224789999999887775632 2345555555433321111 3444566677776655 44542444444
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.88 E-value=2.4 Score=19.68 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=18.9
Q ss_pred EEEEEccCCeEEEEECCCCceee
Q psy16005 72 YIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
.++.++.+|.+..+|.++++...
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 57778889999999998887543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG1896|consensus | Back alignment and domain information |
|---|
Probab=85.76 E-value=29 Score=31.96 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=78.5
Q ss_pred cEEEEEc---------cCCeEEEEECCC-----Cce-----eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcc
Q psy16005 71 FYIASGD---------ISGKVRIWDTVN-----KEH-----ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLP 131 (248)
Q Consensus 71 ~~l~~~~---------~dg~i~iwd~~~-----~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~ 131 (248)
.+|+.|. .-|.+.|+|+-. ++. +........+++|..++=- + -+|+++...++.+|.++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~-G~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-R-GHLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-c-cEEEEccCcEEEEEEec
Confidence 5777764 238899999632 221 1112223456777766532 3 36777778889999998
Q ss_pred CCCCCceeEeCCC----------CCEEEEEcCCCeEEEEE---CCceeeeecccC---CCceEEEcCCCC--EEEEEcCC
Q psy16005 132 IDYEPSSISLDHE----------HGLVAVGGADSKISIVE---NGAKVSSLPIDY---EPSSISLDHEHG--LVAVGGAD 193 (248)
Q Consensus 132 ~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~---~~~~~~~s~~~~--~l~~~~~d 193 (248)
.+.....++|-.- .++++.|.--..|.+.. ....+..+.... .+.++.|--||. .++++..+
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~ 1204 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDAD 1204 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCC
Confidence 8888888877332 23455555555555533 223333333222 345666665665 78888899
Q ss_pred CcEEEEEcC
Q psy16005 194 SKVHIYELN 202 (248)
Q Consensus 194 ~~v~i~d~~ 202 (248)
+.|++|-..
T Consensus 1205 rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1205 RNIHVYMYA 1213 (1366)
T ss_pred CcEEEEEeC
Confidence 998887554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 248 | ||||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 7e-27 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 6e-14 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 2e-09 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 2e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 5e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 6e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 6e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 7e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 9e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-06 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 7e-04 |
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 248 | |||
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.94 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.92 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.92 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.88 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.86 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.85 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.84 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.84 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.83 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.83 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.83 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.82 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.82 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.82 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.81 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.8 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.79 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.76 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.76 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.76 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.75 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.75 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.75 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.74 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.73 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.71 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.7 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.69 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.68 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.68 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.66 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.63 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.62 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.62 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.61 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.61 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.59 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.55 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.52 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.5 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.5 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.46 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.46 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.44 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.43 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.41 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.4 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.39 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.39 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.39 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.36 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.36 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.33 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.32 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.31 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.3 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.27 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.24 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.24 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.22 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.21 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.2 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.18 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.15 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.15 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.12 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.09 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.09 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.07 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.07 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.07 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.04 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.02 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.02 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.99 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.96 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.96 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.95 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.91 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.9 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.89 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.89 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.89 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.88 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.87 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.86 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.85 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.85 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.85 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.85 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.82 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.81 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.81 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.8 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.8 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.8 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.8 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.78 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.77 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.77 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.75 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.75 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.74 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.74 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.73 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.71 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.7 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.65 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.64 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.6 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.58 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 98.56 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.52 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.5 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.5 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.47 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.43 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.42 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.39 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.37 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.02 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 98.02 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.97 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.89 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.84 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.83 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.79 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.76 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.73 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.73 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.62 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.59 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.5 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 97.45 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.4 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.39 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.37 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.36 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.32 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.28 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.24 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.2 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.16 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.15 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.12 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.07 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.0 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.96 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.85 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.81 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.79 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.77 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.55 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.54 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.26 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.04 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 95.83 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.47 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.39 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.3 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.25 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.24 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.99 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.36 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.3 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 93.91 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.27 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 92.81 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 90.81 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 90.53 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 90.51 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 90.46 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 89.22 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.08 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 88.5 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 88.34 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 85.72 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.1 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.94 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 81.82 |
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=277.02 Aligned_cols=231 Identities=14% Similarity=0.195 Sum_probs=203.4
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|..+|.+++|+|++++|++|+.|++|++||+.+++.+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 5788999999999999999987 999999999999999999999999999999999999999999999999999998854
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCC-CCCEEEEEcCCCeEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDH-EHGLVAVGGADSKISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 160 (248)
..+.+|...|.+++|+|++++|++++.|+ +++|+++. ...+.+++|+| ++..+++++.|+.|++|
T Consensus 91 --~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 91 --VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp --EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred --EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 56788999999999999999999999887 59999753 34567899999 67899999999999999
Q ss_pred ECC--ceeeeec--ccCCCceEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 161 ENG--AKVSSLP--IDYEPSSISLDH--EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 161 ~~~--~~~~~~~--~~~~~~~~~~s~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
|.. .....+. +...+..+.++| ++.+|++|+.|+.|++||+++++.+..+. +|...|.+++|+|++++|++++
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s 247 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGS 247 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCCCEEEEEc
Confidence 943 2333332 335577888876 77899999999999999999988766554 7999999999999999999999
Q ss_pred CCCeEEEEECCCCC
Q psy16005 235 AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 ~d~~i~vw~~~~~~ 248 (248)
.||.|++||+.+++
T Consensus 248 ~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 248 EDGTLKIWNSSTYK 261 (304)
T ss_dssp TTSCEEEEETTTCC
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=299.73 Aligned_cols=247 Identities=31% Similarity=0.520 Sum_probs=215.2
Q ss_pred CC-cCcceecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 1 MS-YSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 1 m~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
|+ ++++..++..|..+++.+.+++|+|||++|++++++.+++|++.+++....+.+|...|++++|+|+|++||+|+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d 80 (611)
T 1nr0_A 1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 80 (611)
T ss_dssp -CCCEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCccccccEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCC
Confidence 66 78888999999999999999999999999999998899999999888889999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-----EEEEEcc--------CCCCCceeEeCCCCC
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-----AKVSSLP--------IDYEPSSISLDHEHG 146 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----~~i~~~~--------~~~~~~~~~~~~~~~ 146 (248)
|+|+|||+.+++......+..|...|.+++|+|+++.|++++.+. +++|+.. +...+.+++|+|++.
T Consensus 81 ~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~ 160 (611)
T 1nr0_A 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160 (611)
T ss_dssp SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred CCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCC
Confidence 999999998766555567788999999999999999999988653 4566532 234678999999987
Q ss_pred -EEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------cCCc
Q psy16005 147 -LVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------DHLG 216 (248)
Q Consensus 147 -~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~ 216 (248)
.+++++.|+.+++|| .++....+. +...+.+++|+|++++|++|+.|+.|++||+.+++....+.. +|.+
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~ 240 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 (611)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence 699999999999999 344455554 556789999999999999999999999999988876544422 6999
Q ss_pred CeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 217 PVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.|.+++|+|++++|++++.|++|++||++++
T Consensus 241 ~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 241 SVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 9999999999999999999999999999875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=280.08 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=206.5
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|.++|++++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 5889999999999999999987 999999999999999999999999999999999999999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
..+.+|...|.+++|+|++++|++++.++ +++|++... ..+..+.++|++.++++++.|+.|++||
T Consensus 186 --~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 186 --RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp --ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred --EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 67788999999999999999999999887 499998643 3467788999999999999999999999
Q ss_pred -CCceeeeec-ccCCCceEEEcCC--------------------CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 162 -NGAKVSSLP-IDYEPSSISLDHE--------------------HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 162 -~~~~~~~~~-~~~~~~~~~~s~~--------------------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
.++....+. +...+.+++|+|+ +.+|++|+.|+.|++||+++++....+. +|...|+
T Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~ 342 (410)
T 1vyh_C 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVR 342 (410)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEE
T ss_pred CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEE
Confidence 444555553 5667899999996 6789999999999999999988765554 7999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+++|+|++++|++++.|+.|++||+.+++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999998753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=267.12 Aligned_cols=229 Identities=15% Similarity=0.218 Sum_probs=205.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|++..+++++ |+.|++||+.+++....+..|...+.+++|+|++++|++++.||.|++||+++++.
T Consensus 77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 46889999999999999999987 99999999999999999989999999999999999999999999999999998885
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
. ..+..|...+.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.|++||
T Consensus 157 ~--~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 157 E--YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp E--EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred e--EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 4 56667788999999999999999999877 59999753 35678999999999999999999999999
Q ss_pred --CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 162 --NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 162 --~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
.++....+. +...+.+++|+|++++|++++.|+.|++||+++++.+..+. +|...|.+++|+|++++|++++.|+.
T Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred CCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 445555554 45668999999999999999999999999999988766554 79999999999999999999999999
Q ss_pred EEEEECC
Q psy16005 239 VVLYRVP 245 (248)
Q Consensus 239 i~vw~~~ 245 (248)
|++||+.
T Consensus 314 i~vwd~p 320 (321)
T 3ow8_A 314 IHIYDCP 320 (321)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-43 Score=266.83 Aligned_cols=231 Identities=17% Similarity=0.245 Sum_probs=200.9
Q ss_pred ccccCCcEEEEeCCC----CCEEEEeC-CcEEEEEecCCCce--eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 14 RTQRGQPIVLGGDPK----GKNFLYTN-GNSVIIRNIENPAI--SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~----~~~l~~~~-~~~v~v~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
..|.+.|.+++|+|+ +.+|++|+ |+.|++|++..++. ...+.+|...|.+++|+|++.++++++.|++|++||
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 569999999999985 56899887 99999999987654 345789999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCC
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
+.+++.+ ..+..+...+.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+
T Consensus 109 ~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg 186 (321)
T 3ow8_A 109 LENGKQI--KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186 (321)
T ss_dssp TTTTEEE--EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCEE--EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence 9998855 45667788899999999999999999877 58999753 23467899999999999999999
Q ss_pred eEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 156 KISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
.|++|| .++.+..+. +...+.+++|+|++++|++|+.|+.|++||+++++....+. +|...|.+++|+|++++|++
T Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEE
Confidence 999999 556666665 55678999999999999999999999999999887755444 79999999999999999999
Q ss_pred EcCCCeEEEEECCCC
Q psy16005 233 SDAHRKVVLYRVPDF 247 (248)
Q Consensus 233 ~~~d~~i~vw~~~~~ 247 (248)
++.|+.|++||++++
T Consensus 266 ~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTR 280 (321)
T ss_dssp EETTSCEEEEETTTT
T ss_pred EeCCCcEEEEeCCCC
Confidence 999999999999875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=270.82 Aligned_cols=228 Identities=16% Similarity=0.189 Sum_probs=190.2
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeee----eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI----YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
+...|.+++|+|++.++..+.||.|+|||+.+++.... ..+|.+.|++++|+|++++|++|+.||+|++||+++++
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 45679999999997655555699999999998876543 34899999999999999999999999999999999988
Q ss_pred eeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCCC------------CCceeEeCCC-CCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPIDY------------EPSSISLDHE-HGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~~~ 156 (248)
.+ ..+.+|...|.+++|+|++. .|++++.|+ +++|+++... .+.+++++|+ ++++++++.|+.
T Consensus 161 ~~--~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 161 VL--SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EE--EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred EE--EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 54 67789999999999999885 678888766 6999986432 3567888885 568899999999
Q ss_pred EEEEE--CCceeeeec-ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEE
Q psy16005 157 ISIVE--NGAKVSSLP-IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLV 231 (248)
Q Consensus 157 i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 231 (248)
|++|| .++.+..+. +...+.+++|+|++ ++|++|+.|+.|+|||+++++... ..+|.+.|++++|+|+++ +|+
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~--~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR--SQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE--ECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE--EcCCCCCEEEEEEeCCCCeEEE
Confidence 99999 556666665 56678999999998 579999999999999999887642 347999999999999987 567
Q ss_pred EEcCCCeEEEEECCCC
Q psy16005 232 ASDAHRKVVLYRVPDF 247 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~ 247 (248)
+++.|++|++|++.+.
T Consensus 317 s~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 317 TVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEETTSCEEEEECCC-
T ss_pred EEcCCCeEEEEECCCC
Confidence 8999999999999764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=274.08 Aligned_cols=228 Identities=14% Similarity=0.186 Sum_probs=203.3
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||++++..+
T Consensus 148 ~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 227 (410)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 5888999999999999999987 999999999999999999999999999999999999999999999999999998854
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCC------------------
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHE------------------ 144 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~------------------ 144 (248)
..+.+|...+.++.|+|+++++++++.++ +++|++.. ...+.+++|+|+
T Consensus 228 --~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 228 --KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp --EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred --EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 56778999999999999999999999877 59999753 345678889886
Q ss_pred --CCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 145 --HGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 145 --~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+.++++++.|+.|++|| .+..+..+. +...+.+++|+|++++|++|+.|+.|++||+++++....+. +|...|+
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~ 384 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVT 384 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEE
Confidence 67899999999999999 455666554 55668999999999999999999999999999888766554 7999999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+++|+|++++|++++.|+.|++|+++
T Consensus 385 ~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 385 SLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999874
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=260.74 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=200.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.|++|++.+++.
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 35889999999999999999987 99999999999999999999999999999999999999999999999999987542
Q ss_pred --eeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 93 --ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 93 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
.....+.+|...+.++.|++++. +++++.+ .+++|++.. ...+.+++++|+++++++++.|+.|++
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~ 210 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 23356778999999999999887 5555554 579999753 356788999999999999999999999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
|| .+.....+. +...+.+++|+|++++|++|+.|+.|++||+++++....... .+...|.+++|+|++++|++++.
T Consensus 211 wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence 99 455555665 566789999999999999999999999999998776443321 23457999999999999999999
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
|+.|++||+.+++
T Consensus 291 d~~i~vwd~~~~~ 303 (340)
T 1got_B 291 DFNCNVWDALKAD 303 (340)
T ss_dssp TSEEEEEETTTCC
T ss_pred CCeEEEEEcccCc
Confidence 9999999987753
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=255.83 Aligned_cols=232 Identities=19% Similarity=0.197 Sum_probs=193.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC--CceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN--PAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~--~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~ 88 (248)
.+|.+.|.+++|+|+|++|++++ |+.|++|++.+ .+....+.+|.++|.+++|+| ++++|++|+.||+|++||++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 46889999999999999999987 99999999874 356778889999999999986 48999999999999999998
Q ss_pred CCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCC---------
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID------------YEPSSISLDHE--------- 144 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~--------- 144 (248)
+++......+..|...|.+++|+|+ +++|++++.++ +++|+++.. ..+.+++|+|+
T Consensus 86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 8754334566789999999999997 88999999887 599998643 23567888886
Q ss_pred ----CCEEEEEcCCCeEEEEE--CCc----eeeeec-ccCCCceEEEcCCC---CEEEEEcCCCcEEEEEcCCCCCC--C
Q psy16005 145 ----HGLVAVGGADSKISIVE--NGA----KVSSLP-IDYEPSSISLDHEH---GLVAVGGADSKVHIYELNNKSLS--P 208 (248)
Q Consensus 145 ----~~~~~~~~~~~~i~~~~--~~~----~~~~~~-~~~~~~~~~~s~~~---~~l~~~~~d~~v~i~d~~~~~~~--~ 208 (248)
+++|++++.|+.|++|| .++ ....+. +...+.+++|+|++ .+|++++.|+.|++||+++.... .
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce
Confidence 57999999999999999 333 333444 56678999999985 79999999999999999875421 1
Q ss_pred ccc--ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 209 KAE--LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 209 ~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
... ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 111 3578899999999999999999999999999976
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=264.85 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=190.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC----
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV---- 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---- 88 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+++||+.
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence 46899999999999999999997 9999999999998888888888888888888887777766666666666653
Q ss_pred ----------------------------------------------CCceeeee---eccCCCCCeeEEEEec-CCCEEE
Q psy16005 89 ----------------------------------------------NKEHILKN---EFHPIGGPIKDIAWSP-DNQRMI 118 (248)
Q Consensus 89 ----------------------------------------------~~~~~~~~---~~~~~~~~v~~~~~~~-~~~~l~ 118 (248)
+++.+... ...+|...|.+++|++ ++++|+
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 33222111 0146788899999987 889999
Q ss_pred EEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeeccc--------CCCc
Q psy16005 119 SIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPID--------YEPS 176 (248)
Q Consensus 119 ~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~--------~~~~ 176 (248)
+++.|+ +++|+++. ...+.+++|+|+++++++++.|+.|++|| .++.+..+... ..+.
T Consensus 223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~ 302 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVT 302 (380)
T ss_dssp EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCS
T ss_pred EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceE
Confidence 999777 59999852 34678999999999999999999999999 45555554322 1368
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc---cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA---ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+++|+|+|++|++|+.||.|++||+.+++....+ ..+|.+.|.+++|+|+|++|++++.|+.|++|++...
T Consensus 303 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999999887764333 2369999999999999999999999999999999765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=267.55 Aligned_cols=228 Identities=16% Similarity=0.196 Sum_probs=187.6
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceee----eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD----IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.|...|.+++|+|++++++++.|+.|++||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||++++
T Consensus 92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 47788999999999988887789999999998876543 23479999999999999999999999999999999998
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCC------------CCCceeEeCCC-CCEEEEEcCCC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPID------------YEPSSISLDHE-HGLVAVGGADS 155 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~ 155 (248)
+.+ ..+..|...|.+++|+|++. .+++++.++ +++|+++.. ..+.+++|+|+ +.++++++.|+
T Consensus 172 ~~~--~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 172 AVL--KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp EEE--EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred cEE--EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 854 66788999999999999875 677887766 699998532 23568899997 46889999999
Q ss_pred eEEEEE--CCceeeeec-ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC-CCcEE
Q psy16005 156 KISIVE--NGAKVSSLP-IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP-SNEYL 230 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 230 (248)
.|++|| .++.+..+. +...+.+++|+|++ ++|++|+.|+.|+|||+++++.... .+|.+.|++++|+| ++++|
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEE
Confidence 999999 455566665 45678999999987 5799999999999999999876533 37999999999999 78999
Q ss_pred EEEcCCCeEEEEECCC
Q psy16005 231 VASDAHRKVVLYRVPD 246 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~ 246 (248)
++++.||+|++|++.+
T Consensus 328 ~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEEECC-
T ss_pred EEEcCCCeEEEEECCC
Confidence 9999999999999865
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=279.56 Aligned_cols=234 Identities=21% Similarity=0.293 Sum_probs=197.6
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-------cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
..|.+.|.+++|+|+|++|++++ |+.|++||+.+++....+. +|.+.|.+++|+|++++|++++.|++|++|
T Consensus 187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 35889999999999999999987 9999999999988877774 799999999999999999999999999999
Q ss_pred ECCCCceeee-----------------------------------------eeccCCCCCeeEEEEecCCCEEEEEeCCc
Q psy16005 86 DTVNKEHILK-----------------------------------------NEFHPIGGPIKDIAWSPDNQRMISIVENG 124 (248)
Q Consensus 86 d~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 124 (248)
|+.+++.+.. ..+.+|...|.+++|+|++++|++++.++
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 9987654321 23457899999999999999999999776
Q ss_pred -EEEEEccCC----------------------------------------------------------------------
Q psy16005 125 -AKVSSLPID---------------------------------------------------------------------- 133 (248)
Q Consensus 125 -~~i~~~~~~---------------------------------------------------------------------- 133 (248)
+++|++...
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 588986421
Q ss_pred ----------------------CCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cce--eeeecccCCCceEEEcCCCCEE
Q psy16005 134 ----------------------YEPSSISLDHEHGLVAVGGADSKISIVEN--GAK--VSSLPIDYEPSSISLDHEHGLV 187 (248)
Q Consensus 134 ----------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~~~~~~~~~~~~~~~s~~~~~l 187 (248)
..+.+++++|+++++++++.|+.|++||. +.. .....+...+.+++|+|||++|
T Consensus 427 ~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~l 506 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 506 (611)
T ss_dssp EEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred EEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEE
Confidence 11246788999999999999999999993 221 2334567789999999999999
Q ss_pred EEEcCCCcEEEEEcCC-CCCCCc-ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 188 AVGGADSKVHIYELNN-KSLSPK-AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~-~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++++.|+.|++||+.+ ++.... ....|...|.+++|+|||++|++++.|++|++|+++++
T Consensus 507 as~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp EEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred EEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 9999999999999987 554433 23249999999999999999999999999999999865
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=260.52 Aligned_cols=225 Identities=13% Similarity=0.188 Sum_probs=196.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc----eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA----ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|.+++|+|+++++++++ |+.+++|++.+.+ ....+.+|...|.++.|++++. +++++.|++|++||+++
T Consensus 95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET 173 (340)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT
T ss_pred cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC
Confidence 4678899999999999999987 9999999998753 4556779999999999998875 88999999999999999
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
++.. ..+.+|...|.+++|+|+++++++++.++ +++|+++. ...+.+++|+|+++++++++.|+.|+
T Consensus 174 ~~~~--~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 174 GQQT--TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp TEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEE--EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 8754 56778999999999999999999999776 69999753 34578899999999999999999999
Q ss_pred EEEC--Cceeeeeccc---CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 159 IVEN--GAKVSSLPID---YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 159 ~~~~--~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
+||. ++.+..+.+. ..+.+++|+|++++|++|+.|+.|++||+.+++....+. +|...|.+++|+|++++|+++
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEE
Confidence 9993 4455555443 357899999999999999999999999999887765544 899999999999999999999
Q ss_pred cCCCeEEEEE
Q psy16005 234 DAHRKVVLYR 243 (248)
Q Consensus 234 ~~d~~i~vw~ 243 (248)
+.|+.|++||
T Consensus 331 s~D~~i~iWd 340 (340)
T 1got_B 331 SWDSFLKIWN 340 (340)
T ss_dssp ETTSCEEEEC
T ss_pred cCCccEEecC
Confidence 9999999996
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=261.78 Aligned_cols=238 Identities=18% Similarity=0.203 Sum_probs=191.1
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECc--CCcEEEEEccCCeE
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKV 82 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 82 (248)
++..+..+|.+.|.+++|+|+|++|++++ |+.|++||+.+++ ....+.+|.+.|.+++|+| ++++|++|+.|++|
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 34455567999999999999999999987 9999999998765 4567889999999999986 48999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC-------------CCCceeEeCCC--
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID-------------YEPSSISLDHE-- 144 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~-------------~~~~~~~~~~~-- 144 (248)
++||+++++......+.+|...|.+++|+|+ +.+|++++.++ +++|++... ..+.++.|+|+
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 9999998754444567789999999999998 78999998777 599987643 23567888887
Q ss_pred ---------------CCEEEEEcCCCeEEEEECC-----ceeeeec-ccCCCceEEEcCCC----CEEEEEcCCCcEEEE
Q psy16005 145 ---------------HGLVAVGGADSKISIVENG-----AKVSSLP-IDYEPSSISLDHEH----GLVAVGGADSKVHIY 199 (248)
Q Consensus 145 ---------------~~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~~~~~~~~~s~~~----~~l~~~~~d~~v~i~ 199 (248)
++++++++.|+.|++||.. +....+. +...+.+++|+|++ .+|++++.|+.|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 4689999999999999932 2333443 45668999999987 799999999999999
Q ss_pred EcCCCC---CCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 200 ELNNKS---LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 200 d~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|+++.. ........|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 998632 2222334688999999999999999999999999999975
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=258.98 Aligned_cols=233 Identities=16% Similarity=0.190 Sum_probs=196.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|++.++++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+.....
T Consensus 73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~ 152 (343)
T 2xzm_R 73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152 (343)
T ss_dssp CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence 45888999999999999999987 99999999999999999999999999999999999999999999999999985433
Q ss_pred eeeeeccCCCCCeeEEEEecCC----------CEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEc
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDN----------QRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~ 152 (248)
........|...+.+++|+|++ .++++++.++ +++|+.. +...+.+++|+|++++|++++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs 232 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG 232 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEc
Confidence 2222334788999999999987 6899998777 4999853 345678999999999999999
Q ss_pred CCCeEEEEEC---CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC--ccc----------ccCCcC
Q psy16005 153 ADSKISIVEN---GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP--KAE----------LDHLGP 217 (248)
Q Consensus 153 ~~~~i~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~----------~~~~~~ 217 (248)
.|+.|++||. ......+.....+.+++|+|++.+++++ .|+.|++||+.+++... .+. .+|...
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence 9999999994 2334444456678999999999888765 47789999998876543 111 157788
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|.+++|+|+|++|++|+.||.|++|+++++
T Consensus 312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 312 CTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 999999999999999999999999999765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=259.62 Aligned_cols=227 Identities=13% Similarity=0.199 Sum_probs=193.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee----------------------------------------
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD---------------------------------------- 52 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~---------------------------------------- 52 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||..+++...
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 35899999999999999999997 9999999986654322
Q ss_pred --------eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeC
Q psy16005 53 --------IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVE 122 (248)
Q Consensus 53 --------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 122 (248)
.+..|...|.+++|+|+++.|++++.|++|++||+++++.+ ..+.+|...|.+++|+| ++++|++++.
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL--QSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE--EEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 23357788899999999999999999999999999998854 56778999999999987 5689999997
Q ss_pred Cc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cceeeeecc---cCCCceEEEcCCCCE
Q psy16005 123 NG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVEN--GAKVSSLPI---DYEPSSISLDHEHGL 186 (248)
Q Consensus 123 ~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~---~~~~~~~~~s~~~~~ 186 (248)
++ +++|+++. ...+.+++|+|+++++++++.|+.|++||. ++.+..+.. ...+.+++|+|++++
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 298 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCE
Confidence 77 59999753 345788999999999999999999999994 334444432 235688999999999
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
|++|+.|+.|++||+.+++.+..+. +|.+.|++++|+|+|++|++++.|++|++|+
T Consensus 299 l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 299 LFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999888765444 7999999999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=259.10 Aligned_cols=240 Identities=14% Similarity=0.204 Sum_probs=198.4
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee---eeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD---IYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
.++..++.+..+.+.+++|+|+|++|++++ |+.|++||+.++.... ...+|...|.+++|+|++++|++|+.|+++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 455667654444999999999999999987 9999999998876432 235899999999999999999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-------------CCCCceeEeCCCCCEE
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-------------DYEPSSISLDHEHGLV 148 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-------------~~~~~~~~~~~~~~~~ 148 (248)
++||+..+.......+.+|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 999998876545567889999999999999999999999877 59999853 2346788999999999
Q ss_pred EEEcCCCeEEEEEC--Cc--eeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC---------------
Q psy16005 149 AVGGADSKISIVEN--GA--KVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP--------------- 208 (248)
Q Consensus 149 ~~~~~~~~i~~~~~--~~--~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~--------------- 208 (248)
++++.|+.|++|+. ++ ....+. +...+.+++|+|++++|++++.|+.|++||........
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 99999999999993 32 223333 56678999999999999999999999999975432211
Q ss_pred cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 209 KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 209 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.....|...|.+++|+|++..|++++.|+.|++|+...
T Consensus 246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 11112788999999999999999999999999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=263.71 Aligned_cols=232 Identities=15% Similarity=0.273 Sum_probs=195.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCc------------------ceEEEEECcCCcEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC------------------AVNVAKYSPSGFYIASG 76 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~~~ 76 (248)
.|.+.|.+++|+|||++|++++++.+++|++.+++....+..|.. .|.+++|+|++++|++|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 488999999999999999999999999999999988777755432 48999999999999999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCC-CC
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDH-EH 145 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~-~~ 145 (248)
+.|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.++ +++|++.. ...+..++++| ++
T Consensus 142 ~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp ETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred cCCCeEEEEECCCCcEE--EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence 99999999999988744 56788999999999999999999999887 59999753 34567888998 89
Q ss_pred CEEEEEcCCCeEEEEE--CCceeeee--------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC--------
Q psy16005 146 GLVAVGGADSKISIVE--NGAKVSSL--------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS-------- 207 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~--~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~-------- 207 (248)
+++++++.|+.|++|| .+..+..+ .+...+.+++|+|++++|++|+.|+.|++||+++....
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 9999999999999999 44444444 24566899999999999999999999999999864321
Q ss_pred ---CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 208 ---PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 208 ---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.....+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 11223688999999999999999999999999999998764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=256.43 Aligned_cols=231 Identities=13% Similarity=0.160 Sum_probs=198.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|+|++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||++...
T Consensus 62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~- 140 (319)
T 3frx_A 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC- 140 (319)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE-
T ss_pred eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 35889999999999999999987 9999999999999999999999999999999999999999999999999997542
Q ss_pred eeeeeccCCCCCeeEEEEecC------CCEEEEEeCCc-EEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPD------NQRMISIVENG-AKVSSLP----------IDYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~~~-~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
...+.+|...+.++.|.|. +..+++++.++ +++|++. +...+.+++++|+++++++++.|+
T Consensus 141 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg 218 (319)
T 3frx_A 141 --LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218 (319)
T ss_dssp --EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred --EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 2566789999999999985 44788888776 5999975 345678999999999999999999
Q ss_pred eEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc-------cccCCcCeEEEEEcCC
Q psy16005 156 KISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA-------ELDHLGPVTDCSFSPS 226 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-------~~~~~~~v~~~~~s~~ 226 (248)
.|++|| .++.+..+.....+.+++|+|++.++++++.+ .+++|++......... ...|...+.+++|+||
T Consensus 219 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 297 (319)
T 3frx_A 219 EIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT
T ss_pred eEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC
Confidence 999999 55667777777889999999999999988865 4999999875432221 1235678999999999
Q ss_pred CcEEEEEcCCCeEEEEECCCCC
Q psy16005 227 NEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|++|++++.||.|++||+.+++
T Consensus 298 g~~l~sg~~Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 298 GQTLFAGYTDNVIRVWQVMTAN 319 (319)
T ss_dssp SSEEEEEETTSCEEEEEEEEC-
T ss_pred CCEEEEeecCceEEEEEEeecC
Confidence 9999999999999999998753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=258.54 Aligned_cols=237 Identities=14% Similarity=0.215 Sum_probs=196.8
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
+..+|.+.|.+++|+|+|++|++++ |+.+++|++.++. ....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 3356889999999999999999987 9999999988764 466788999999999999999999999999999999998
Q ss_pred CCcee-eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCCCEEEEEcCC
Q psy16005 89 NKEHI-LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 89 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
++... ....+..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|++++|++++.|
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 76432 3356778999999999999999999999877 58998642 3457889999999999999999
Q ss_pred CeEEEEEC--Cc---------------eeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC-------
Q psy16005 155 SKISIVEN--GA---------------KVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP------- 208 (248)
Q Consensus 155 ~~i~~~~~--~~---------------~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~------- 208 (248)
+.|++|+. .. .+..+. +...+.+++|+|++..|++++.|+.|++|+........
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 99999982 11 111222 45568899999999999999999999999997654221
Q ss_pred -cccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCCCC
Q psy16005 209 -KAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 -~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~ 248 (248)
....+|...|++++|+|++. +|++++.||.|++|++.+++
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 11236899999999999984 99999999999999998754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=260.52 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=188.1
Q ss_pred cccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCC-----------CceeeeeecCCcceEEEEECcCCcEEEEEccCCe
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK 81 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 81 (248)
+..+.+.|.+++|+|||++|++++++++++||... .........+...|.+++|+|++ .|++|+.||+
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 34567789999999999999998887777776321 11112223466789999999985 6889999999
Q ss_pred EEEEECCCCceeee--eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCC-E
Q psy16005 82 VRIWDTVNKEHILK--NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHG-L 147 (248)
Q Consensus 82 i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~-~ 147 (248)
|++||+++++.... ....+|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|++++. +
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 99999998875432 34568999999999999999999999887 69999753 45678899999874 7
Q ss_pred EEEEcCCCeEEEEE--CCceeeeec---ccCCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEE
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLP---IDYEPSSISLDHE-HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDC 221 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~ 221 (248)
+++++.|+.|++|| .++....+. ....+.+++|+|+ +++|++|+.||.|++||+++++.+..+. +|...|+++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v 263 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGL 263 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEE
Confidence 89999999999999 455555553 2345789999995 5688999999999999999998876655 799999999
Q ss_pred EEcCCC-cEEEEEcCCCeEEEEECCCCC
Q psy16005 222 SFSPSN-EYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 222 ~~s~~~-~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|+|++ ++|++++.|++|+|||+++++
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 999998 579999999999999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=253.90 Aligned_cols=230 Identities=15% Similarity=0.218 Sum_probs=192.4
Q ss_pred ccccCCcEEEEe-----CC-CCCEEEEeC-CcEEEEEecCCC-------ceeeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 14 RTQRGQPIVLGG-----DP-KGKNFLYTN-GNSVIIRNIENP-------AISDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 14 ~~~~~~v~~~~~-----s~-~~~~l~~~~-~~~v~v~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
.+|.+.|.+++| ++ ++++|++++ |+.|++||+.+. .....+.+|...|.+++|+|++.++++++.|
T Consensus 18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D 97 (343)
T 2xzm_R 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97 (343)
T ss_dssp ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence 468999999999 77 899999987 999999998753 3456678999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc------------CCCCCceeEeCCCC-
Q psy16005 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP------------IDYEPSSISLDHEH- 145 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~------------~~~~~~~~~~~~~~- 145 (248)
++|++||+++++.+ ..+.+|...|.+++|+|++++|++++.++ +++|++. ....+.++.++|++
T Consensus 98 ~~v~lwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 98 KTLRLWDLRTGTTY--KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp SEEEEEETTSSCEE--EEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCC
T ss_pred CcEEEEECCCCcEE--EEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccc
Confidence 99999999998854 56778999999999999999999999776 6999974 23346788898886
Q ss_pred ---------CEEEEEcCCCeEEEEEC-Cceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC
Q psy16005 146 ---------GLVAVGGADSKISIVEN-GAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH 214 (248)
Q Consensus 146 ---------~~~~~~~~~~~i~~~~~-~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 214 (248)
.++++++.|+.|++||. .+....+ .+...+.+++|+|+|++|++|+.|+.|++||+.+........ .+
T Consensus 176 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~ 254 (343)
T 2xzm_R 176 SANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DA 254 (343)
T ss_dssp SCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-EC
T ss_pred cccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cC
Confidence 78999999999999993 3333333 356678999999999999999999999999996544333322 35
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
...|.+++|+|++++++++ .|+.|++|++.++
T Consensus 255 ~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 5679999999999877655 5888999998764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=248.42 Aligned_cols=232 Identities=10% Similarity=0.152 Sum_probs=198.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|++++|++++ |+.|++|++.+++....+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence 46889999999999999999987 99999999999999999999999999999999999999999999999999998885
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
+ ..+.+|...|.+++|+|++++|++++.++ +++|+++. ...+.++.++|+++++++++.|+.|++||
T Consensus 100 ~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 100 L--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177 (312)
T ss_dssp E--EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred E--EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 4 56778999999999999999999999776 69999863 34567899999999999999999999999
Q ss_pred --CCceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe---EEEEEcCCCcEEEEEc
Q psy16005 162 --NGAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPV---TDCSFSPSNEYLVASD 234 (248)
Q Consensus 162 --~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~~~~ 234 (248)
.++.+..+. ....+..++|+|++++|++++.|+.|++||+++++....+. +|...+ ......+++++|++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~ 256 (312)
T 4ery_A 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGS 256 (312)
T ss_dssp TTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECC
T ss_pred CCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEEC
Confidence 344444443 34457889999999999999999999999999887655443 454332 2333346788999999
Q ss_pred CCCeEEEEECCCCC
Q psy16005 235 AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 ~d~~i~vw~~~~~~ 248 (248)
.||.|++||+.+++
T Consensus 257 ~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 257 EDNLVYIWNLQTKE 270 (312)
T ss_dssp TTSCEEEEETTTCC
T ss_pred CCCEEEEEECCCch
Confidence 99999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=251.62 Aligned_cols=232 Identities=17% Similarity=0.186 Sum_probs=181.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC-------CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN-------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
.|.+.|.+++|+|++++|++++ |+.|++|++.. .+....+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3889999999999999999987 99999999853 345667789999999999999999999999999999999
Q ss_pred CCCC-c-eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCC--CCEEE
Q psy16005 87 TVNK-E-HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHE--HGLVA 149 (248)
Q Consensus 87 ~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~--~~~~~ 149 (248)
++.. + ......+.+|...|.+++|+|++++|++++.|+ +++|+... ...+.+++|+|+ +..++
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 9543 2 123356778999999999999999999999776 59998642 345678899998 67899
Q ss_pred EEcCCCeEEEEECC----------ceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--CCcccccCC
Q psy16005 150 VGGADSKISIVENG----------AKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--SPKAELDHL 215 (248)
Q Consensus 150 ~~~~~~~i~~~~~~----------~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~ 215 (248)
+++.|+.|++|+.. .....+. +...+.+++|++++ +|++++.||.|++||..+++. ......+|.
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc
Confidence 99999999999832 1222332 55678999999765 789999999999999987642 222223577
Q ss_pred c-CeEEEEEcC--CCcEEEEEcCCCeEEEEECCCC
Q psy16005 216 G-PVTDCSFSP--SNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 216 ~-~v~~~~~s~--~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
. .|.+++|+| ++++|++++.||.|++|++++.
T Consensus 295 ~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp TSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred cceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 6 899999999 7899999999999999998753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=249.74 Aligned_cols=237 Identities=16% Similarity=0.233 Sum_probs=182.5
Q ss_pred ccccccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCc-----eeeeeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 10 ATLPRTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPA-----ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
..+ .+|.+.|++++|+|+ +++|++|+ |+.|++||+.+.+ +...+.+|...|.+++|+|++++|++++.|+.|
T Consensus 32 ~tL-~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 32 GTL-KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEE-CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 345 469999999999998 57899887 9999999987654 355678999999999999999999999999999
Q ss_pred EEEECCCCceeee-----------------------------------------eeccCCCCCeeEEEEecCC--CEEEE
Q psy16005 83 RIWDTVNKEHILK-----------------------------------------NEFHPIGGPIKDIAWSPDN--QRMIS 119 (248)
Q Consensus 83 ~iwd~~~~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~--~~l~~ 119 (248)
++|+......... ....+|...+..++|++++ ..+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence 9999876542210 1123455666677776653 34555
Q ss_pred EeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCE
Q psy16005 120 IVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGL 186 (248)
Q Consensus 120 ~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~ 186 (248)
++.++ +++|++.. ...+.+++|+|+++++++++.|+.|++|| ..+.+..+.....+.+++++|++.+
T Consensus 191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 270 (340)
T 4aow_A 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSE
T ss_pred EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCce
Confidence 55544 47777642 34567889999999999999999999999 5566667777778889999998765
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCc--------ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPK--------AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+ +++.|+.|++||++++..... ....|...|++++|+||+++|++++.||.|+|||+++|+
T Consensus 271 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 271 L-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp E-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred e-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 5 455689999999887643222 223588899999999999999999999999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-41 Score=257.76 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=184.1
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-------CcEEEEEecCCCcee----eeeecCCcceEEEEECcCCcEEEEEccCC
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-------GNSVIIRNIENPAIS----DIYTEHSCAVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~v~v~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 80 (248)
.|..|.+.|.+++|||||++|++++ |+.+++|+..++... .....|...|.+++|+|+++ +++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 3456889999999999999999986 578999998776543 23447888999999999986 45677899
Q ss_pred eEEEEECCCCceeee--eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCC-
Q psy16005 81 KVRIWDTVNKEHILK--NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHG- 146 (248)
Q Consensus 81 ~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~- 146 (248)
+|++||+.+++.... ....+|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|++++.
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999988765432 34457899999999999999999999877 69999753 34577899999875
Q ss_pred EEEEEcCCCeEEEEE--CCceeeeec---ccCCCceEEEcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEE
Q psy16005 147 LVAVGGADSKISIVE--NGAKVSSLP---IDYEPSSISLDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 220 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~--~~~~~~~~~---~~~~~~~~~~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~ 220 (248)
++++++.|+.|++|| .++....+. ....+.+++|+|++ .+|++|+.|+.|++||+++++....+. +|...|++
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~ 274 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITG 274 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeEEE
Confidence 788999999999999 344444333 34557899999975 689999999999999999988765554 78999999
Q ss_pred EEEcCCC-cEEEEEcCCCeEEEEECCCCC
Q psy16005 221 CSFSPSN-EYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 221 ~~~s~~~-~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++|+|++ ++|++++.|++|+|||+++++
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999997 578999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=254.85 Aligned_cols=225 Identities=17% Similarity=0.188 Sum_probs=193.8
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
.|.+++|+|+|++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+++++... .
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--~ 202 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--T 202 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--E
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE--E
Confidence 489999999999999987 9999999999999999999999999999999999999999999999999999887543 2
Q ss_pred ccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccC-----------------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 98 FHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPI-----------------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
+. +...+.+++|+| ++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.|+
T Consensus 203 ~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 203 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 32 457899999999 899999999777 59999642 23567899999999999999999999
Q ss_pred EEECCc--------------eeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 159 IVENGA--------------KVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 159 ~~~~~~--------------~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
+||... ....+ .+...+.+++++|++.+|++|+.|+.|++||+++++....+. +|...|.+++|
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~ 360 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAV 360 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEe
Confidence 999322 11222 345568899999999999999999999999999988765544 79999999999
Q ss_pred cC------CCcEEEEEcCCCeEEEEECCCC
Q psy16005 224 SP------SNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 224 s~------~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+| ++++|++++.||+|++|+++..
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 86 6889999999999999998653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=248.26 Aligned_cols=231 Identities=16% Similarity=0.215 Sum_probs=194.6
Q ss_pred ccccccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCC-----CceeeeeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 10 ATLPRTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIEN-----PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 10 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
..+ .+|.+.|.+++|+|++ ++|++++ |+.|++|++.. +.....+.+|...|.+++|+|++++|++|+.|++|
T Consensus 11 ~~l-~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 11 GTL-EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEE-ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 344 4699999999999965 7888887 99999999864 23456788999999999999999999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCC------CC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHE------HG 146 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~------~~ 146 (248)
++||+.+++.. ..+.+|...|.+++|+|++++|++++.|+ +++|+++. ...+..+.+.|. +.
T Consensus 90 ~~wd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 90 RLWDVATGETY--QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEEETTTTEEE--EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEEECCCCCee--EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999998854 56788999999999999999999999887 59999752 345667888874 45
Q ss_pred EEEEEcCCCeEEEEECC--ceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 147 LVAVGGADSKISIVENG--AKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~~~--~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
.+++++.|+.|++||.. +....+ .+...+.+++|+|++++|++|+.|+.|++||+.+++....+. +...|.+++|
T Consensus 168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~ 245 (319)
T 3frx_A 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSLAF 245 (319)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEE
Confidence 89999999999999943 334444 356778999999999999999999999999999988755443 4568999999
Q ss_pred cCCCcEEEEEcCCCeEEEEECCC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+|++.+|++++. +.+++|+++.
T Consensus 246 sp~~~~la~~~~-~~i~v~~~~~ 267 (319)
T 3frx_A 246 SPNRYWLAAATA-TGIKVFSLDP 267 (319)
T ss_dssp CSSSSEEEEEET-TEEEEEEETT
T ss_pred cCCCCEEEEEcC-CCcEEEEeCc
Confidence 999999988875 4699999764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=245.27 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=195.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|..+|.+++|+|++++|++++ |+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||++++...
T Consensus 53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 132 (304)
T 2ynn_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (304)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch
Confidence 4778899999999999999987 999999999999999999999999999999999999999999999999999877543
Q ss_pred eeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCC--CCCEEEEEcCCCeEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPID-----------YEPSSISLDH--EHGLVAVGGADSKIS 158 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~i~ 158 (248)
...+.+|...|.+++|+| ++..|++++.|+ +++|++... ..+..+.+.| ++.++++++.|+.|+
T Consensus 133 -~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 133 -EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp -EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred -hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 356788999999999999 678999999887 599998532 2345566665 778999999999999
Q ss_pred EEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc--EEEEE
Q psy16005 159 IVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE--YLVAS 233 (248)
Q Consensus 159 ~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~ 233 (248)
+|| .++.+..+. +...+.+++|+|++.+|++|+.||.|++||+++++....+. .|...+.+++|+|++. +++++
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCEEEE
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEEEEe
Confidence 999 555666665 55678999999999999999999999999999988766554 6788999999999885 46666
Q ss_pred cCCCeEEEEECCCC
Q psy16005 234 DAHRKVVLYRVPDF 247 (248)
Q Consensus 234 ~~d~~i~vw~~~~~ 247 (248)
+ ++.+.+|++.+.
T Consensus 291 ~-~~g~~~~~~~~~ 303 (304)
T 2ynn_A 291 F-DNGFTVLSLGND 303 (304)
T ss_dssp E-TTEEEEEECC--
T ss_pred c-CCceEEEEeccC
Confidence 5 556888887654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=245.47 Aligned_cols=232 Identities=17% Similarity=0.206 Sum_probs=203.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeee---ee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDI---YT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~---~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|.+.|.+++|+|+++++++++++.|++|++.+++.... +. .|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 588999999999999999999999999999987654332 22 7889999999999999999999999999999998
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
++......+..|...+.+++|+|+++++++++.++ +.+|++.. ...+.+++++|+++.+++++.|+.|+
T Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 87555567778899999999999999999998766 69999753 35577899999999999999999999
Q ss_pred EEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 159 IVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
+|| .++.+..+.+...+.+++|+|+++++++++.++.|++||+++++.. ....|...|.+++|+|++++|++++.|
T Consensus 209 ~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d 286 (337)
T 1gxr_A 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE--EEcCCccceeEEEECCCCCEEEEecCC
Confidence 999 5666677777888999999999999999999999999999987753 233689999999999999999999999
Q ss_pred CeEEEEECCCCC
Q psy16005 237 RKVVLYRVPDFE 248 (248)
Q Consensus 237 ~~i~vw~~~~~~ 248 (248)
|.|++||+++++
T Consensus 287 g~i~~~~~~~~~ 298 (337)
T 1gxr_A 287 NLLNAWRTPYGA 298 (337)
T ss_dssp SEEEEEETTTCC
T ss_pred CcEEEEECCCCe
Confidence 999999998764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=242.13 Aligned_cols=229 Identities=14% Similarity=0.242 Sum_probs=196.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
..|...|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 35788999999999999999987 99999999999999999999999999999999999999999999999999998875
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-----------YEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
+ ..+..|..+|.+++|+|++++|++++.++ +++|++... ..+..++++|+++++++++.|+.|++|
T Consensus 142 ~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 142 L--KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp E--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred E--EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 4 56778899999999999999999999777 599998532 345678999999999999999999999
Q ss_pred E--CCceeeeecccC-CC--ceEEE-cCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 161 E--NGAKVSSLPIDY-EP--SSISL-DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 161 ~--~~~~~~~~~~~~-~~--~~~~~-s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
| .++.+..+..+. .. ....+ .+++.+|++|+.||.|++||+++++....+. +|...|.+++|+|+++++++++
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEEEE
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEEEE
Confidence 9 455555554322 22 22233 4678899999999999999999988765554 7999999999999999999986
Q ss_pred --CCCeEEEEECC
Q psy16005 235 --AHRKVVLYRVP 245 (248)
Q Consensus 235 --~d~~i~vw~~~ 245 (248)
.|+.|++|+.+
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999975
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=247.93 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=197.4
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC----ceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVR 83 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~ 83 (248)
.+..+|.+.|.+++|+|++++|++++ |+.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 34467999999999999999999987 999999999876 35666779999999999999 699999999999999
Q ss_pred EEECCCCce-------eeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC--------------------
Q psy16005 84 IWDTVNKEH-------ILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID-------------------- 133 (248)
Q Consensus 84 iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~-------------------- 133 (248)
+||+++++. .....+..|...|.+++|+|+ ++++++++.++ +++|++...
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999987642 223566789999999999999 99999999877 599997532
Q ss_pred ---CCCceeEeCCC---CCEEEEEcCCCeEEEEEC--Cce--eeeec-ccCCCceEEEcCCC----CEEEEEcCCCcEEE
Q psy16005 134 ---YEPSSISLDHE---HGLVAVGGADSKISIVEN--GAK--VSSLP-IDYEPSSISLDHEH----GLVAVGGADSKVHI 198 (248)
Q Consensus 134 ---~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~--~~~--~~~~~-~~~~~~~~~~s~~~----~~l~~~~~d~~v~i 198 (248)
..+.++.++|+ +..+++++.++.+.+|+. ++. ...+. +...+.+++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 34567888887 899999999999977772 222 33333 56678999999998 89999999999999
Q ss_pred EEcCCCCC---------------------------------------------CCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 199 YELNNKSL---------------------------------------------SPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 199 ~d~~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
||++++.. ......+|...|++++|+|++++|+++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 99987521 111123588999999999999999999
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
+.||.|++|++.+++
T Consensus 325 ~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 325 GDDGKVRLWKATYSN 339 (351)
T ss_dssp ETTSCEEEEEECTTS
T ss_pred cCCCcEEEEecCcCc
Confidence 999999999998763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=253.50 Aligned_cols=184 Identities=17% Similarity=0.249 Sum_probs=153.4
Q ss_pred ceEEEEECcCCcEEEE--EccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-----
Q psy16005 60 AVNVAKYSPSGFYIAS--GDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI----- 132 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~----- 132 (248)
.+.+++|||||+++++ ++.|++|+|||+++++.+ ..+ .|...|.+++|+|||+++++++++++.+|+...
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~--~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK--FEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA 211 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE--EEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE--EEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccCccee
Confidence 3678999999998765 457899999999998865 334 367889999999999999999999998887542
Q ss_pred -------CCCCceeEeCCCCCEEEEEcCCC----eEEEEEC--Cce----eeee-cccCCCceEEEcCCCCEEEEEcCCC
Q psy16005 133 -------DYEPSSISLDHEHGLVAVGGADS----KISIVEN--GAK----VSSL-PIDYEPSSISLDHEHGLVAVGGADS 194 (248)
Q Consensus 133 -------~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~--~~~----~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~ 194 (248)
...+.+++|+|+++.+++++.++ .++.|+. ... ...+ .+...+.+++|+|||++||+|+.|+
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 23467889999999999998776 5777872 221 1122 3456789999999999999999999
Q ss_pred cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 195 KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.|+|||+++++.+..+..+|...|++++|+|||++|++++.|++|+||+++.
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999887766668999999999999999999999999999999964
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=265.03 Aligned_cols=223 Identities=18% Similarity=0.304 Sum_probs=195.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...+.+++|+|+|+++++++ ++.+++|+. +++....+..|...|.+++|+|++++|++++.|+.|++||.. ++.+
T Consensus 342 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~ 419 (577)
T 2ymu_A 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 419 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEE
Confidence 4778899999999999999986 899999995 567788888999999999999999999999999999999964 4432
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-C
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISIVE-N 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 162 (248)
..+.+|...|.+++|+||+++|++++.++ +++|+.. ....+.+++|+|+++++++++.|+.|++|+ .
T Consensus 420 --~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 420 --QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497 (577)
T ss_dssp --EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred --EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence 56678999999999999999999999887 5899864 345678899999999999999999999999 6
Q ss_pred Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEE
Q psy16005 163 GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 163 ~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 241 (248)
++.+..+. +...+++++|+|++++|++++.|+.|++||. +++.+..+ .+|.+.|++++|+|||++|++++.|++|++
T Consensus 498 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 498 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 66666665 5667899999999999999999999999996 45554444 389999999999999999999999999999
Q ss_pred EE
Q psy16005 242 YR 243 (248)
Q Consensus 242 w~ 243 (248)
||
T Consensus 576 Wd 577 (577)
T 2ymu_A 576 WN 577 (577)
T ss_dssp EC
T ss_pred eC
Confidence 97
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=251.31 Aligned_cols=230 Identities=13% Similarity=0.111 Sum_probs=203.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|.++|.+++|+|++++|++++ ++.|++||+.+++ ....+.+|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 4778999999999999999995 9999999999887 778888999999999999999999999999999999998887
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
......+..|...+.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence 655566678899999999999999999999776 68998753 334678999999999999999999
Q ss_pred EEEEEC--------------------Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC
Q psy16005 157 ISIVEN--------------------GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 157 i~~~~~--------------------~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
+++||. ++.+..+. +...+.+++|+|++++|++++.|+.|++||+++++....+. .|.
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~ 244 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SET 244 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSS
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-cCC
Confidence 999993 45555553 45678999999999999999999999999999988765554 688
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|.+++|+|++++|+++ .|+.|++|++.+
T Consensus 245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 899999999999988888 899999999876
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=247.28 Aligned_cols=236 Identities=14% Similarity=0.174 Sum_probs=185.7
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC--ceeeee-ec-CCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP--AISDIY-TE-HSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~--~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
.+..+. +|.+.|.+++|+|+ +|++++ |+.|++|++.++ +....+ .. |...|.+++|+|++++|++|+.|++|
T Consensus 6 ~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 6 LIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cceeec-cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 344453 58899999999998 888876 999999999875 334444 34 99999999999999999999999999
Q ss_pred EEEECCCCc-----eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------CCCCceeEeC
Q psy16005 83 RIWDTVNKE-----HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------DYEPSSISLD 142 (248)
Q Consensus 83 ~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~ 142 (248)
++||++... ......+.+|...|.+++|+|++++|++++.|+ +++|+++. ...+.+++|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 999986421 123356778999999999999999999999776 69999831 2346789999
Q ss_pred CCCCEEEEEcCCCeEEEEEC--C--ceeeeec-ccCCCceEEEcCC--CCEEEEEcCCCcEEEEEcCCCCC--------C
Q psy16005 143 HEHGLVAVGGADSKISIVEN--G--AKVSSLP-IDYEPSSISLDHE--HGLVAVGGADSKVHIYELNNKSL--------S 207 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~--~--~~~~~~~-~~~~~~~~~~s~~--~~~l~~~~~d~~v~i~d~~~~~~--------~ 207 (248)
|++++|++++.|+.|++||. + +.+..+. +...+.+++|+|+ +..|++|+.|+.|++||++++.. .
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999983 3 3445554 5667899999998 67999999999999999976521 1
Q ss_pred CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 208 PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 208 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..+...|...|.+++|++++ +|++++.||.|++|+..++
T Consensus 243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 12222388999999999765 7999999999999998654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=250.72 Aligned_cols=233 Identities=20% Similarity=0.202 Sum_probs=198.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC--CCceeeeeecCCcceEEEEECcC--CcEEEEEccCCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE--NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~ 88 (248)
.+|.+.|.+++|+|++++|++++ |+.|++|++. +++....+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 87 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 87 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence 46899999999999999999986 9999999998 55667788899999999999986 8999999999999999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC------------CCCceeEeCC----------
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID------------YEPSSISLDH---------- 143 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~---------- 143 (248)
+++......+..|...|.+++|+|+ ++++++++.++ +++|++... ..+.+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--------
T ss_pred CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccccc
Confidence 8875455677789999999999999 99999999887 599998643 3467889999
Q ss_pred ---CCCEEEEEcCCCeEEEEE--CCc----eeeeec-ccCCCceEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCCC--
Q psy16005 144 ---EHGLVAVGGADSKISIVE--NGA----KVSSLP-IDYEPSSISLDHE---HGLVAVGGADSKVHIYELNNKSLSP-- 208 (248)
Q Consensus 144 ---~~~~~~~~~~~~~i~~~~--~~~----~~~~~~-~~~~~~~~~~s~~---~~~l~~~~~d~~v~i~d~~~~~~~~-- 208 (248)
++.++++++.|+.|++|| .+. ....+. +...+.+++|+|+ +.+|++++.||.|++||++++....
T Consensus 168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 247 (379)
T 3jrp_A 168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK 247 (379)
T ss_dssp --CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE
T ss_pred CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcccee
Confidence 699999999999999999 232 223333 4667899999999 8999999999999999999874221
Q ss_pred --cccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 209 --KAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 209 --~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.....|...|.+++|+|++++|++++.||.|++|++.+
T Consensus 248 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 248 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 11124788999999999999999999999999999863
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=258.20 Aligned_cols=228 Identities=13% Similarity=0.129 Sum_probs=189.4
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC--ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc-
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP--AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE- 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~- 91 (248)
+.++|.+++|+|++++|++++ |+.|++||+.++ +....+.+|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 557899999999999999996 999999999988 6778888999999999999999999999999999999999876
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
......+..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 333456778999999999999999999999776 58988743 345678999999999999999999
Q ss_pred EEEEEC--------------------CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC----CCcccc
Q psy16005 157 ISIVEN--------------------GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL----SPKAEL 212 (248)
Q Consensus 157 i~~~~~--------------------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~----~~~~~~ 212 (248)
|++||. ++.+..+.+...+.+++|+|++++|++++.|+.|++||+++++. ...+.
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~- 248 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK- 248 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE-
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec-
Confidence 999994 23344445666789999999999999999999999999999887 44443
Q ss_pred cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|...|.+++|+|++++|++++.++.+ +|+..
T Consensus 249 ~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 249 LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 789999999999999999999866666 66654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=245.35 Aligned_cols=229 Identities=11% Similarity=0.107 Sum_probs=193.5
Q ss_pred ccCCcEEEEeCCC----CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 16 QRGQPIVLGGDPK----GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 16 ~~~~v~~~~~s~~----~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
|.+.|.+++|+|+ +++|++++ |+.|++||+.+++....+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6688999999999 66888886 99999999999999999999999999999999 899999999999999999998
Q ss_pred Cceeeeee-ccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc------------------------------------
Q psy16005 90 KEHILKNE-FHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP------------------------------------ 131 (248)
Q Consensus 90 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~------------------------------------ 131 (248)
++...... +..|...|.+++|+|++++|++++.++ +++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 87543221 267899999999999999999999776 6999985
Q ss_pred --CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc--e--------------eeeec-ccCCCceEEEcCC--CCEEEEE
Q psy16005 132 --IDYEPSSISLDHEHGLVAVGGADSKISIVENGA--K--------------VSSLP-IDYEPSSISLDHE--HGLVAVG 190 (248)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--------------~~~~~-~~~~~~~~~~s~~--~~~l~~~ 190 (248)
....+.+++|+ ++++++++.|+.|++||... . +..+. +...+.+++|+|+ +++|++|
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 45567788887 77999999999999999322 1 23332 4556889999999 9999999
Q ss_pred cCCCcEEEEEcCCCCCCCc---ccccC--CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 191 GADSKVHIYELNNKSLSPK---AELDH--LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 191 ~~d~~v~i~d~~~~~~~~~---~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+.||.|++||+.+++.... ....| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999998875431 22245 78999999999999999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=239.79 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=198.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|...|.+++|+|+++++++++ ++.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 4778899999999999999886 8999999999877 556677899999999999999999999999999999999887
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
.. ..+..|...+.+++|+|+++++++++.++ +++|+++. ...+.+++++|+++.+++++.++.+++|+
T Consensus 175 ~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 175 LV--RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252 (337)
T ss_dssp EE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ee--eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 54 56677899999999999999999999776 58999753 45678899999999999999999999999
Q ss_pred --CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 162 --NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
.++......+...+.+++|+|++++|++++.||.|++||+.+++... ...|...|.+++|+|++++|++++.||.|
T Consensus 253 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp TTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE--EecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 33344444567778999999999999999999999999999988753 33588899999999999999999999999
Q ss_pred EEEECC
Q psy16005 240 VLYRVP 245 (248)
Q Consensus 240 ~vw~~~ 245 (248)
++|++.
T Consensus 331 ~iw~~~ 336 (337)
T 1gxr_A 331 TVYEVI 336 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=249.60 Aligned_cols=243 Identities=12% Similarity=0.116 Sum_probs=202.0
Q ss_pred CCcCcceecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc------eeeeeecCCcceEEEEECcC----
Q psy16005 1 MSYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA------ISDIYTEHSCAVNVAKYSPS---- 69 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~------~~~~~~~~~~~v~~~~~s~~---- 69 (248)
|+.........+ ..|.+.|.+++|+| ++|++++ |+.|++|++.+++ ....+..|...|.+++|+|+
T Consensus 1 m~~~~~~~~~~~-~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 1 MSKVFIATANAG-KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp --CEEEEEEEES-SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred Cchhhhhhhhhh-hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccC
Confidence 555444444444 46899999999999 6788776 9999999999887 67778899999999999999
Q ss_pred C---cEEEEEccCCeEEEEECCCCcee---eeeeccCC-----CCCeeEEEEe----cCCCE-EEEEeCCc-EEEEEccC
Q psy16005 70 G---FYIASGDISGKVRIWDTVNKEHI---LKNEFHPI-----GGPIKDIAWS----PDNQR-MISIVENG-AKVSSLPI 132 (248)
Q Consensus 70 ~---~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~~~-~~i~~~~~ 132 (248)
+ ++|++++.||.|++||+.+++.. ....+..| ...|.+++|+ |++++ |++++.++ +++|++..
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9 99999999999999999887640 02455666 5899999999 99999 99998776 69999875
Q ss_pred ----------------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecc-------cCCC
Q psy16005 133 ----------------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPI-------DYEP 175 (248)
Q Consensus 133 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~-------~~~~ 175 (248)
...+.+++|+|++ ++++++.|+.|++|| .++.+..+.. ...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 2335678999999 999999999999999 4566666665 6778
Q ss_pred ceEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCccccc-------------CCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 176 SSISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAELD-------------HLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
.+++|+|++++|++++.| +.|++||+++++.+..+. . |...|.+++|+|++++|++++.||.|
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999999999999999 999999999988765554 4 88999999999999999999999999
Q ss_pred EEEECCCCC
Q psy16005 240 VLYRVPDFE 248 (248)
Q Consensus 240 ~vw~~~~~~ 248 (248)
++||+++++
T Consensus 316 ~iwd~~~~~ 324 (397)
T 1sq9_A 316 RFWDVKTKE 324 (397)
T ss_dssp EEEETTTTE
T ss_pred EEEEcCCCc
Confidence 999998763
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=259.03 Aligned_cols=226 Identities=18% Similarity=0.295 Sum_probs=193.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|++++|||||++|++++ |+.|+|||. +++.++.+.+|...|++++|+|++++|++++.|++|++||.. ++.
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~ 90 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQL 90 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCE
Confidence 36999999999999999999987 899999994 678888999999999999999999999999999999999964 443
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc----------------------------------------
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP---------------------------------------- 131 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~---------------------------------------- 131 (248)
+ ..+.+|...|.+++|+|++++|++++.++. ++|+..
T Consensus 91 ~--~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (577)
T 2ymu_A 91 L--QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168 (577)
T ss_dssp E--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred E--EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecccc
Confidence 3 567889999999999999999999998774 666631
Q ss_pred ----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEE
Q psy16005 132 ----------IDYEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIY 199 (248)
Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~ 199 (248)
....+..+.++|+++++++++.|+.+++|+ .++.+..+. +...+.+++|+|++++|++++.|+.|++|
T Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w 248 (577)
T 2ymu_A 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 113345678899999999999999999999 555555554 56678999999999999999999999999
Q ss_pred EcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 200 ELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 200 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|... +.+.. ..+|...|.+++|+|+++.|++++.|+.|++|+..
T Consensus 249 ~~~~-~~~~~-~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~ 292 (577)
T 2ymu_A 249 NRNG-QLLQT-LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292 (577)
T ss_dssp CTTS-CEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eCCC-CEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence 9653 33333 33799999999999999999999999999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=241.16 Aligned_cols=230 Identities=14% Similarity=0.207 Sum_probs=202.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 45899999999999999999986 99999999999999999999999999999999999999999999999999999886
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC-----------------------CCceeEeCC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY-----------------------EPSSISLDH 143 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~-----------------------~~~~~~~~~ 143 (248)
.. .+. +...+.+++|+|+++++++++.+ .+.+|++.... .+.+++++|
T Consensus 109 ~~--~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 109 VA--TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp EE--EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred EE--Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 53 333 67899999999999999999876 46999986432 677889999
Q ss_pred CCCEEEEEcCCCeEEEEEC---Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 144 EHGLVAVGGADSKISIVEN---GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~---~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+++.+++++.++.|++||. .+....+. +...+.+++|+|++++|++++.|+.|++||+++++...... +...+.
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~ 263 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLN 263 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCce
Confidence 9999999999999999994 34555554 56678999999999999999999999999999988765543 778899
Q ss_pred EEEEcCCCcEEEEEcCCC--------------eEEEEECCCCC
Q psy16005 220 DCSFSPSNEYLVASDAHR--------------KVVLYRVPDFE 248 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~--------------~i~vw~~~~~~ 248 (248)
.++|+|+++++++++.++ .+++||+.+++
T Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 264 TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 999999999999999888 89999997764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=251.99 Aligned_cols=232 Identities=11% Similarity=0.137 Sum_probs=189.3
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc-----------eeeeeecCC------------cceEEEEECcCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA-----------ISDIYTEHS------------CAVNVAKYSPSG 70 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-----------~~~~~~~~~------------~~v~~~~~s~~~ 70 (248)
.+.+.|.+++|+|+|++|++|+ |+.|++|++.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999987 9999999998876 467788998 889999999998
Q ss_pred --cEEEEEccCCeEEEEECCCCceee--------------------------------------eeeccCCCCCeeEEEE
Q psy16005 71 --FYIASGDISGKVRIWDTVNKEHIL--------------------------------------KNEFHPIGGPIKDIAW 110 (248)
Q Consensus 71 --~~l~~~~~dg~i~iwd~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~ 110 (248)
..|++++.||.|++||+.+++... .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999987644210 0113579999999999
Q ss_pred ecCCCEEEEEeCCcEEEEEccC------------------CCCCceeEeCCCC-CEEEEEcCCCeEEEEE--CCce----
Q psy16005 111 SPDNQRMISIVENGAKVSSLPI------------------DYEPSSISLDHEH-GLVAVGGADSKISIVE--NGAK---- 165 (248)
Q Consensus 111 ~~~~~~l~~~~~~~~~i~~~~~------------------~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~--~~~~---- 165 (248)
+|++++|+++.+..+++|++.. ...+.+++|+|++ +++++++.|+.|++|| .++.
T Consensus 186 ~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 186 NSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp CTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred cCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 9999999999544569999861 2347789999998 9999999999999999 3333
Q ss_pred eeeecccC-------------CCceEEEcCCCCEEEEEcCCCcEEEEEcCC-CCCCCcccccCCcC--------------
Q psy16005 166 VSSLPIDY-------------EPSSISLDHEHGLVAVGGADSKVHIYELNN-KSLSPKAELDHLGP-------------- 217 (248)
Q Consensus 166 ~~~~~~~~-------------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~-------------- 217 (248)
...+..+. .+.+++|+|++++|++++. +.|++||+++ ++....+. .|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTTTHHHHHHTSGGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-ccccccccccccccccccc
Confidence 35555433 7899999999999999998 9999999997 66554443 45431
Q ss_pred -eEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 218 -VTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 218 -v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+..++|+|++++|++++.||.|++||+.+++
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 3349999999999999999999999998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=262.01 Aligned_cols=244 Identities=22% Similarity=0.290 Sum_probs=212.9
Q ss_pred cCcceecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCC----ceeeeeecCCcc-eEEEEECc--CCcEEEE
Q psy16005 3 YSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP----AISDIYTEHSCA-VNVAKYSP--SGFYIAS 75 (248)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~----~~~~~~~~~~~~-v~~~~~s~--~~~~l~~ 75 (248)
++.+..++..+..|.+.|.+++|+|+|++|++++++.|++|++.++ +....+.+|... |.+++|+| ++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 4 ISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 83 (615)
T ss_dssp EEEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred cchhhccCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEE
Confidence 4667788888899999999999999999999999999999999988 888889999999 99999999 9999999
Q ss_pred EccCCeEEEEECCCC------ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-----cEEEEEcc--------CCCCC
Q psy16005 76 GDISGKVRIWDTVNK------EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLP--------IDYEP 136 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~--------~~~~~ 136 (248)
++.||.|++||+.++ +......+..|...|.+++|+|++++|++++.+ .+.+|+.. ....+
T Consensus 84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 163 (615)
T ss_dssp EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCE
T ss_pred ecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccE
Confidence 999999999999765 333456677889999999999999999999976 24555532 34567
Q ss_pred ceeEeCCCCC-EEEEEcCCCeEEEEE--CCceeeeec-ccC---CCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCCC
Q psy16005 137 SSISLDHEHG-LVAVGGADSKISIVE--NGAKVSSLP-IDY---EPSSISLDHE-HGLVAVGGADSKVHIYELNNKSLSP 208 (248)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~~~i~~~~--~~~~~~~~~-~~~---~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~~~ 208 (248)
.+++|+|+++ .+++++.|+.|++|| .++.+..+. +.. .+.+++|+|+ +++|++++.|+.|++||+++++...
T Consensus 164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 8999999998 899999999999999 445556665 444 6899999999 9999999999999999999988766
Q ss_pred cccc---cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 209 KAEL---DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 209 ~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.+.. .|...|.+++|+ ++++|++++.|+.|++||++++
T Consensus 244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 5534 789999999999 9999999999999999999875
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=236.11 Aligned_cols=227 Identities=16% Similarity=0.231 Sum_probs=179.8
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee--
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK-- 95 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 95 (248)
..+++||+++ +|++|.|++|+|||+.+++..+.+. +|...|.+++|+|++++|++|+.||+|++||+++++.+..
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 4679999986 8888889999999999999887665 6778899999999999999999999999999988764321
Q ss_pred -------------------------------------eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----
Q psy16005 96 -------------------------------------NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---- 133 (248)
Q Consensus 96 -------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---- 133 (248)
..+.+|...+..+.+.++++++++++.++ +++|++...
T Consensus 107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 186 (318)
T 4ggc_A 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186 (318)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence 12334666777778888888888887766 578887532
Q ss_pred ----------CCCceeEeCCCCCE---EEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEc--CCCcE
Q psy16005 134 ----------YEPSSISLDHEHGL---VAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGG--ADSKV 196 (248)
Q Consensus 134 ----------~~~~~~~~~~~~~~---~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d~~v 196 (248)
..+..+.+.|++.. +++++.++.|++|+ .............+..+.++|++..+++++ .|+.|
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i 266 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL 266 (318)
T ss_dssp CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEE
Confidence 23445666665542 23566778888888 344444555666788899999999877654 79999
Q ss_pred EEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 197 HIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++||+++++.+..+. +|.+.|++++|+|++++|++++.||+|+|||+.+.+
T Consensus 267 ~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 267 VIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999998876665 799999999999999999999999999999997753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=254.90 Aligned_cols=233 Identities=10% Similarity=0.112 Sum_probs=181.8
Q ss_pred cccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceee--eeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISD--IYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~--~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|+|++|+| ++++||+|+ ||.|+|||+.+++... .+.+|.+.|++++|+| ++++|++++.||+|++||+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 4678899999999 567888886 9999999998766443 4558999999999998 789999999999999999987
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCCCC-EEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHEHG-LVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~i~ 158 (248)
+..........+...+.+++|+|++++|++++.++ +++|+++. ...+.+++|+|++. ++++++.|+.|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 65433233334455788999999999999999877 59999753 34578899999876 788999999999
Q ss_pred EEECC--cee----eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC------------------------
Q psy16005 159 IVENG--AKV----SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP------------------------ 208 (248)
Q Consensus 159 ~~~~~--~~~----~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~------------------------ 208 (248)
+||.. +.. ....+...+.+++|+|+|++|++++.||.|++||+.+++...
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence 99932 221 223456678999999999999999999999999987542110
Q ss_pred ------------------------------------cccccCCcCeEEE-EEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 209 ------------------------------------KAELDHLGPVTDC-SFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 ------------------------------------~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+..+|...|.++ +|+|+|++|++++ |+.|+||++++++
T Consensus 357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 0011355567776 6999999999876 7899999999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=244.44 Aligned_cols=241 Identities=15% Similarity=0.223 Sum_probs=198.8
Q ss_pred cceecccccccccCCcEEEEeCCCCCEEEE-eC----CcEEEEEecCCCceeeee-ecCCcceEEEEECcC---CcEEEE
Q psy16005 5 NKYIFATLPRTQRGQPIVLGGDPKGKNFLY-TN----GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS---GFYIAS 75 (248)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~----~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~---~~~l~~ 75 (248)
.++.+..+..+|.+.|.+++|+|+++.+++ ++ |+.|++||+.+++..... .+|...|.+++|+|+ +++|++
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred hhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence 344555555679999999999999976654 42 799999999988765443 378999999999998 699999
Q ss_pred EccCCeEEEEECCCCc-eeeeeeccCCCCCeeEEE------EecCCCEEEEEeCCc-EEEEEccCCC-------------
Q psy16005 76 GDISGKVRIWDTVNKE-HILKNEFHPIGGPIKDIA------WSPDNQRMISIVENG-AKVSSLPIDY------------- 134 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~~~-~~i~~~~~~~------------- 134 (248)
++.||.|++||+.+++ .. ..+.+|...|.++. |+|++++|++++.++ +++|++....
T Consensus 86 ~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPEMPV--YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp EETTSCEEEECTTSCSSCS--EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred ecCCCeEEEEeCCCCCccE--EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 9999999999999876 33 56678999999995 468999999999876 6999986543
Q ss_pred --CCceeE----eCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcC---CCCEEEEEcCCCcEEEEEcCC
Q psy16005 135 --EPSSIS----LDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDH---EHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 135 --~~~~~~----~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d~~v~i~d~~~ 203 (248)
.+.++. ++|+++++++++.|+.|++|| .++......+...+.+++|+| ++.+|++++.||.|++||+++
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 334455 679999999999999999999 445555566778899999999 999999999999999999998
Q ss_pred CCCCCccc----ccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCCC
Q psy16005 204 KSLSPKAE----LDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 204 ~~~~~~~~----~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~ 247 (248)
++...... .+|...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 77654432 26899999999999998 8999999999999998753
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=243.90 Aligned_cols=235 Identities=16% Similarity=0.211 Sum_probs=200.7
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.+...|.+.|.+++|+|++++|++++ |+.|++||+.+++....+..|...|.+++| ++++|++++.||.|++||++.
T Consensus 128 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~ 205 (401)
T 4aez_A 128 LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI 205 (401)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred eeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc
Confidence 33344788999999999999999986 999999999999999999999999999999 457999999999999999985
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCC-EEEEEc--CCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHG-LVAVGG--ADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~-~~~~~~--~~~ 155 (248)
... ....+..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|++. ++++++ .|+
T Consensus 206 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~ 284 (401)
T 4aez_A 206 ANH-QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK 284 (401)
T ss_dssp SSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC
T ss_pred Ccc-eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC
Confidence 443 2356778999999999999999999999766 69999753 45678999999764 666654 799
Q ss_pred eEEEEE--CCceeeeecccCCCceEEEcCCCCEEEE--EcCCCcEEEEEcCCCCCCCcc-cccCCcCeEEEEEcCCCcEE
Q psy16005 156 KISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAV--GGADSKVHIYELNNKSLSPKA-ELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~--~~~d~~v~i~d~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l 230 (248)
.|++|| .++.+..+.....+.+++|+|+++++++ |+.||.|++||+.+++..... ..+|...|.+++|+|++++|
T Consensus 285 ~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 285 QIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364 (401)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEE
Confidence 999999 6677778888888999999999999999 558999999999987654332 23689999999999999999
Q ss_pred EEEcCCCeEEEEECCCCC
Q psy16005 231 VASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~~ 248 (248)
++++.||.|++|++.+++
T Consensus 365 ~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 365 STAASDENLKFWRVYDGD 382 (401)
T ss_dssp EEECTTSEEEEEECCC--
T ss_pred EEEeCCCcEEEEECCCCc
Confidence 999999999999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=266.31 Aligned_cols=232 Identities=14% Similarity=0.186 Sum_probs=205.3
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|+|++|++++ +|.|++||+.+++....+..|..+|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 35888999999999999999987 89999999999999999999999999999999999999999999999999999885
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCC-CCCEEEEEcCCCeEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID-----------YEPSSISLDH-EHGLVAVGGADSKISI 159 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~i~~ 159 (248)
+ ..+.+|...|.+++|+|++++|++++.++ +++|++... ..+.+++|+| +++.+++++.|+.|++
T Consensus 90 ~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 90 V--VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp E--EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred E--EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 4 56678999999999999999999999887 599997643 4567899999 8899999999999999
Q ss_pred EEC--Cceeeeec--ccCCCceEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 160 VEN--GAKVSSLP--IDYEPSSISLDH--EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 160 ~~~--~~~~~~~~--~~~~~~~~~~s~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
||. +.....+. ....+.+++|+| ++.++++++.||.|++||+++++....+. +|...|.+++|+|++++|+++
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp EETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEE
T ss_pred EECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEE
Confidence 993 33444433 236789999999 99999999999999999999888755544 688999999999999999999
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
+.||.|++||+.+++
T Consensus 247 ~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYK 261 (814)
T ss_dssp ETTSCEEEEETTTCS
T ss_pred eCCCeEEEEECCCCc
Confidence 999999999998753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=261.28 Aligned_cols=232 Identities=14% Similarity=0.183 Sum_probs=194.1
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|...|.+++|+|++++|++++ |+.|++||+.+++..+.+.+|...|.+++|+|++++|++++.|++|++||......
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 45889999999999999999987 99999999999999999999999999999999999999999999999999865532
Q ss_pred ee-eeeccCCCCCeeEEEEecCC--CEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 93 IL-KNEFHPIGGPIKDIAWSPDN--QRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 93 ~~-~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
.. .....+|...|.+++|+|++ ..+++++.++ +++|++.. ...+.+++++|+++++++++.|+.|+
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 21 12235688899999999987 5788888776 69999753 35678899999999999999999999
Q ss_pred EEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------------------cCCcCe
Q psy16005 159 IVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------------------DHLGPV 218 (248)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------------~~~~~v 218 (248)
+|| .++.+..+.....+.+++|+|++.++++++ ++.|++||+++++.+..+.. .+...+
T Consensus 587 iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 587 LWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp EEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred EEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 999 566677777777889999999999888776 55699999998765433221 112247
Q ss_pred EEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 219 TDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++++|+|+|++|++++.||.|++|++..
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 8999999999999999999999999864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=242.33 Aligned_cols=233 Identities=10% Similarity=0.106 Sum_probs=192.7
Q ss_pred ccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCCceeeeee--cCCcceEEEEECc-CCcEEEEEccCCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENPAISDIYT--EHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 88 (248)
..|.+.|.+++|+|++ ++|++++ |+.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++||++
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 4588999999999999 8999987 9999999999888776665 6999999999999 78999999999999999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEcc---------CCCCCceeEeCCCCC-EEEEEcCCCeE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLP---------IDYEPSSISLDHEHG-LVAVGGADSKI 157 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~i 157 (248)
+...........|...+.+++|+|++++|++++.++. ++|+++ ....+.+++|+|+++ ++++++.|+.|
T Consensus 150 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 229 (383)
T 3ei3_B 150 GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATV 229 (383)
T ss_dssp SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEE
Confidence 6443222223345588999999999999999998874 899974 345678999999999 99999999999
Q ss_pred EEEEC------CceeeeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccc------cCC---------
Q psy16005 158 SIVEN------GAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAEL------DHL--------- 215 (248)
Q Consensus 158 ~~~~~------~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~--------- 215 (248)
++||. +..+..+.+...+.+++|+| ++++|++++.|+.|++||+++++....+.. .|.
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 230 KLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp EEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECS
T ss_pred EEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccC
Confidence 99993 44666677788899999999 999999999999999999998876544431 122
Q ss_pred -cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 216 -GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 216 -~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+..++|+|++++ +++.|+.|++||+.+++
T Consensus 310 ~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred CCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 34445677777776 77889999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=258.30 Aligned_cols=229 Identities=17% Similarity=0.237 Sum_probs=194.8
Q ss_pred ccccCCcEEEEeCCCC-CEEEEeC-CcEEEEEecCCC-----ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 14 RTQRGQPIVLGGDPKG-KNFLYTN-GNSVIIRNIENP-----AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~-~~l~~~~-~~~v~v~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
..|.+.|++++|+|++ ++|++++ |+.|++|++.+. ...+.+.+|...|.+++|+|++++|++|+.||+|++||
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 458 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4699999999999975 6788886 999999998763 33456789999999999999999999999999999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-------------CCCCceeEeCCCC--CEEEE
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-------------DYEPSSISLDHEH--GLVAV 150 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-------------~~~~~~~~~~~~~--~~~~~ 150 (248)
+.++... ..+.+|...|.+++|+|++++|++++.|+ +++|+... ...+.+++|+|++ ..+++
T Consensus 459 ~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 459 LAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp TTTTEEE--EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred CCCCcce--eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 9988754 56778999999999999999999999877 59998632 2346789999986 58999
Q ss_pred EcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 151 GGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 151 ~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
++.|+.|++|| .++....+. +...+.+++|+|++++|++|+.|+.|++||+++++.+... .+...|.+++|+|++
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~ 614 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHALCFSPNR 614 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--BCSSCEEEEEECSSS
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--cCCCcEEEEEEcCCC
Confidence 99999999999 444555554 5667899999999999999999999999999998875444 356789999999999
Q ss_pred cEEEEEcCCCeEEEEECCCC
Q psy16005 228 EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~~ 247 (248)
.+|++++ ++.|++||++++
T Consensus 615 ~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 615 YWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp SEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEc-CCCEEEEECCCC
Confidence 8887765 567999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=242.85 Aligned_cols=227 Identities=14% Similarity=0.212 Sum_probs=192.5
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
..+....|+|++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++||+.+++.+ .
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~ 175 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--R 175 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC--E
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc--e
Confidence 3445557899999999986 999999999999888888899999999999999999999999999999999988754 5
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------------------------------CCCceeEe
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------------------------------YEPSSISL 141 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------------------------------~~~~~~~~ 141 (248)
.+.+|...|.+++|+|++++|++++.++ +++|++... ..+..++|
T Consensus 176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 6678999999999999999999999877 699997532 33455677
Q ss_pred CCCCCEEEEEcCCCeEEEEE--CCceeeeec--ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCC-CCcccccCC
Q psy16005 142 DHEHGLVAVGGADSKISIVE--NGAKVSSLP--IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSL-SPKAELDHL 215 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~--~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~-~~~~~~~~~ 215 (248)
+|+++++++++.|+.|++|| .++....+. +...+.+++|+|++. +|++|+.||.|++||+++++. ...+...|.
T Consensus 256 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 335 (420)
T 3vl1_A 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG 335 (420)
T ss_dssp SCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT
T ss_pred cCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC
Confidence 89999999999999999999 444444443 456789999999999 999999999999999998765 334443377
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..|.++.| |++++|++++.|+.|++|++.++
T Consensus 336 ~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 336 TPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp SCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 78888855 57889999999999999998763
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=241.81 Aligned_cols=229 Identities=17% Similarity=0.217 Sum_probs=198.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...|++++|+|+|++|++|+ |+.|++||+.+++.+..+.+|...+.+++++ +..|++|+.|+.+++||.......
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 4677899999999999999987 9999999999999999999999999998875 679999999999999999876543
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC--------------CCCceeEeCCCCC-EEEE--EcCCC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID--------------YEPSSISLDHEHG-LVAV--GGADS 155 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~--------------~~~~~~~~~~~~~-~~~~--~~~~~ 155 (248)
...+.+|...+..+.|+|+++++++++.++ +++|+.... ..+..++|+|.+. ++++ |+.|+
T Consensus 223 -~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 223 -VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp -EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred -eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 356778999999999999999999999877 589987532 3456788988654 5544 46899
Q ss_pred eEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 156 KISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 156 ~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
.|++|| .++....+.....+.++.|+|+++.+++++ .|+.|+|||+.+++.+..+. +|.+.|++++|+|||++|+
T Consensus 302 ~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 302 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEE
T ss_pred EEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEE
Confidence 999999 677777888888899999999999888764 78999999999998876665 8999999999999999999
Q ss_pred EEcCCCeEEEEECCCC
Q psy16005 232 ASDAHRKVVLYRVPDF 247 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~ 247 (248)
+++.|++|+|||+.+.
T Consensus 381 S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 381 SAAADETLRLWRCFEL 396 (420)
T ss_dssp EEETTTEEEEECCSCS
T ss_pred EEecCCeEEEEECCCC
Confidence 9999999999998653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=247.18 Aligned_cols=232 Identities=15% Similarity=0.178 Sum_probs=199.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC----CceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 88 (248)
.|...|.+++|+|++++|++++ |+.|++|++.+ .+....+..|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4778999999999999999986 89999999987 3577778899999999999998 8999999999999999998
Q ss_pred CCc------eee-eeeccCCCCCeeEEEEecC-CCEEEEEeCCc-EEEEEccC----------------CCCCceeEeCC
Q psy16005 89 NKE------HIL-KNEFHPIGGPIKDIAWSPD-NQRMISIVENG-AKVSSLPI----------------DYEPSSISLDH 143 (248)
Q Consensus 89 ~~~------~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~-~~i~~~~~----------------~~~~~~~~~~~ 143 (248)
+++ ... ......|...|.+++|+|+ +.++++++.++ +++|+++. ...+.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 221 1234678899999999999 78888888776 69999753 45678899999
Q ss_pred CC-CEEEEEcCCC---eEEEEECC---ceeeeec--ccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCccccc
Q psy16005 144 EH-GLVAVGGADS---KISIVENG---AKVSSLP--IDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELD 213 (248)
Q Consensus 144 ~~-~~~~~~~~~~---~i~~~~~~---~~~~~~~--~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 213 (248)
++ .++++++.++ .|++||.. .....+. +...+.+++|+| ++++|++++.|+.|++||+++++.+..+. .
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-A 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-C
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-C
Confidence 97 6899999998 99999932 3455554 667789999999 99999999999999999999988765554 7
Q ss_pred CCcCeEEEEEcCCC-cEEEEEcCCCeEEEEECCCC
Q psy16005 214 HLGPVTDCSFSPSN-EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 214 ~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~ 247 (248)
|...|.+++|+|++ ++|++++.|+.|++|++.++
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 89999999999999 89999999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=248.27 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=194.1
Q ss_pred cEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 20 PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
+.+++|+|+|++|++++ |+.+++||+.+++....+..| ..+....|+|++++|++++.||.|++||+.+++.. ..+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~ 135 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EID 135 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EET
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eec
Confidence 44789999999999997 999999999988777766665 45556678999999999999999999999987743 566
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCce
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAK 165 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~ 165 (248)
..|...|.+++|+|++++|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.|++|| .++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 78999999999999999999999887 59999853 34577899999999999999999999999 4555
Q ss_pred eeeecc-------------------------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEE
Q psy16005 166 VSSLPI-------------------------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTD 220 (248)
Q Consensus 166 ~~~~~~-------------------------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~ 220 (248)
+..+.. ...+.+++|+|++++|++|+.||.|++||+++++........|...|.+
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 555542 2445667789999999999999999999999988776666568899999
Q ss_pred EEEcCCCc-EEEEEcCCCeEEEEECCCCC
Q psy16005 221 CSFSPSNE-YLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 221 ~~~s~~~~-~l~~~~~d~~i~vw~~~~~~ 248 (248)
++|+|+++ +|++++.||.|++||+++++
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 99999999 99999999999999998763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=235.59 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=193.7
Q ss_pred ccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEE
Q psy16005 12 LPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWD 86 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd 86 (248)
+...|.+.|.+++|+|++++|++++ |+.|++|++.+++ ....+..|...|.+++|+|+++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 4457899999999999999999886 9999999998877 3444558999999999999999 999999999999999
Q ss_pred C-CCCceeeeeeccC--CCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------C---------CCCceeEeCCC
Q psy16005 87 T-VNKEHILKNEFHP--IGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------D---------YEPSSISLDHE 144 (248)
Q Consensus 87 ~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~---------~~~~~~~~~~~ 144 (248)
+ .+++. ..+.. |...|.+++|+| ++.+++++.++ +++|+++. . ..+.+++++++
T Consensus 86 ~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 9 87754 45667 999999999999 99999999877 59999764 2 34567888887
Q ss_pred CCEEEEEcCCCeEEEEECCc---e---eeeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCC------CCCCccc
Q psy16005 145 HGLVAVGGADSKISIVENGA---K---VSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNK------SLSPKAE 211 (248)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~---~---~~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~------~~~~~~~ 211 (248)
+ +++++.++.|++||... . .....+...+.+++|+| +++++++++.||.|++|+++.. +....+
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~- 238 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF- 238 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE-
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee-
Confidence 7 89999999999999433 2 12334567789999999 9999999999999999999887 433333
Q ss_pred ccCCc---------CeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 212 LDHLG---------PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 212 ~~~~~---------~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..|.. .|.+++|+|++++|++++.||.|++||+.+++
T Consensus 239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 24543 99999999999999999999999999998763
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=238.87 Aligned_cols=233 Identities=14% Similarity=0.205 Sum_probs=190.4
Q ss_pred cccCCcEEEEeCCC---CCEEEEeC-CcEEEEEecCCCc-eeeeeecCCcceEEEE------ECcCCcEEEEEccCCeEE
Q psy16005 15 TQRGQPIVLGGDPK---GKNFLYTN-GNSVIIRNIENPA-ISDIYTEHSCAVNVAK------YSPSGFYIASGDISGKVR 83 (248)
Q Consensus 15 ~~~~~v~~~~~s~~---~~~l~~~~-~~~v~v~~~~~~~-~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~ 83 (248)
.|...|.+++|+|+ +++|++++ |+.|++||+.+++ ....+.+|...|.+++ |+|++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 57889999999999 68888886 9999999999887 7888889999999995 578999999999999999
Q ss_pred EEECCCCceeeeeeccCC----CCCeeEEE----EecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCC--
Q psy16005 84 IWDTVNKEHILKNEFHPI----GGPIKDIA----WSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDH-- 143 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~----~~~v~~~~----~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~-- 143 (248)
+||+++++... ..+..| ...+.+++ |+|+++++++++.++ +++|+++. ...+.+++|+|
T Consensus 143 vwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPV-ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCS-EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcc-eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 99999876221 333333 33888888 788999999999876 59999753 45678999999
Q ss_pred -CCCEEEEEcCCCeEEEEEC--Cceeeee------cccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCC-----
Q psy16005 144 -EHGLVAVGGADSKISIVEN--GAKVSSL------PIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSP----- 208 (248)
Q Consensus 144 -~~~~~~~~~~~~~i~~~~~--~~~~~~~------~~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~----- 208 (248)
+++.+++++.|+.|++||. ++....+ .+...+.+++|+|+++ +|++++.||.|++||++++....
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 9999999999999999992 2222222 4667789999999998 89999999999999998754321
Q ss_pred -------------cccccCCcCeEEEEEcCCCcEEE-EEcCCCeEEEEECCCCC
Q psy16005 209 -------------KAELDHLGPVTDCSFSPSNEYLV-ASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 -------------~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~ 248 (248)
....+|...|++++|+|++++|+ +++.|+.|++||+.+++
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 12236889999999999999998 79999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=243.16 Aligned_cols=233 Identities=14% Similarity=0.137 Sum_probs=195.7
Q ss_pred cccCCcEEEEeCCC----C---CEEEEeC-CcEEEEEecCCCce-----eeeeecC-----CcceEEEEEC----cCCcE
Q psy16005 15 TQRGQPIVLGGDPK----G---KNFLYTN-GNSVIIRNIENPAI-----SDIYTEH-----SCAVNVAKYS----PSGFY 72 (248)
Q Consensus 15 ~~~~~v~~~~~s~~----~---~~l~~~~-~~~v~v~~~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~~~ 72 (248)
.|...|.+++|+|+ + ++|++++ |+.|++|++.+++. ...+..| ...|.+++|+ |++++
T Consensus 60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence 57889999999999 9 8999886 99999999998886 7778888 5899999999 99999
Q ss_pred -EEEEccCCeEEEEECCC------Cceee-----eeec-----cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc---
Q psy16005 73 -IASGDISGKVRIWDTVN------KEHIL-----KNEF-----HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP--- 131 (248)
Q Consensus 73 -l~~~~~dg~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~--- 131 (248)
|++++.||.|++||+.+ ++.+. .... ..|...+.+++|+|++ .+++++.++ +++|+++
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc
Confidence 99999999999999988 55432 2221 4578899999999999 999998777 5899874
Q ss_pred ----------C---CCCCceeEeCCCCCEEEEEcCC---CeEEEEE--CCceeeeec--------------ccCCCceEE
Q psy16005 132 ----------I---DYEPSSISLDHEHGLVAVGGAD---SKISIVE--NGAKVSSLP--------------IDYEPSSIS 179 (248)
Q Consensus 132 ----------~---~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~--~~~~~~~~~--------------~~~~~~~~~ 179 (248)
. ...+.+++|+|+++++++++.| +.|++|| .++.+..+. +...+.+++
T Consensus 219 ~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 219 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 2 5567889999999999999999 9999999 455666665 466789999
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-----cC---------------CcCeEEEEEcCCC----------cE
Q psy16005 180 LDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-----DH---------------LGPVTDCSFSPSN----------EY 229 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~---------------~~~v~~~~~s~~~----------~~ 229 (248)
|+|++++|++++.||.|++||+++++....+.. .| ...|.+++|+|++ ++
T Consensus 299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 378 (397)
T 1sq9_A 299 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 378 (397)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence 999999999999999999999998876554431 45 8899999999998 79
Q ss_pred EEEEcCCCeEEEEECCCCC
Q psy16005 230 LVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~~~ 248 (248)
|++++.||.|++|++++|+
T Consensus 379 l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 379 LCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEETTTEEEEEEEEC--
T ss_pred EEEecCCCcEEEEEcCCCC
Confidence 9999999999999999875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=260.38 Aligned_cols=234 Identities=19% Similarity=0.202 Sum_probs=198.4
Q ss_pred cccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC--CCceeeeeecCCcceEEEEECcC--CcEEEEEccCCeEEEEEC
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE--NPAISDIYTEHSCAVNVAKYSPS--GFYIASGDISGKVRIWDT 87 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~ 87 (248)
..+|.+.|++++|+|+|++|++++ ||.|++||+. +++....+.+|.++|.+++|+|+ +++|++|+.||.|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 357999999999999999999986 9999999998 45667788899999999999987 999999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEEEccCC------------CCCceeEeCC---------
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVSSLPID------------YEPSSISLDH--------- 143 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~--------- 143 (248)
.+++......+..|...|.+++|+|+ ++.+++++.++ +++|++... ..+.++.|+|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 98875455677889999999999999 99999999887 599998643 4567889999
Q ss_pred ----CCCEEEEEcCCCeEEEEE--CC----ceeeeec-ccCCCceEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCC--
Q psy16005 144 ----EHGLVAVGGADSKISIVE--NG----AKVSSLP-IDYEPSSISLDHE---HGLVAVGGADSKVHIYELNNKSLS-- 207 (248)
Q Consensus 144 ----~~~~~~~~~~~~~i~~~~--~~----~~~~~~~-~~~~~~~~~~s~~---~~~l~~~~~d~~v~i~d~~~~~~~-- 207 (248)
++..+++++.||.|++|| .+ .....+. +...+.+++|+|+ +++|++++.||.|++||+++++..
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce
Confidence 589999999999999999 23 2233333 5667899999999 899999999999999999987421
Q ss_pred --CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 208 --PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 208 --~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
......|...|++++|+|++++|++++.||.|++|++.+
T Consensus 245 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 112225888999999999999999999999999999874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=229.84 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=200.7
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.....+ .+|.+.|.+++| |++++|++++ |+.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|
T Consensus 9 ~~~~~l-~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATL-KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEE-CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHh-hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 344455 458999999999 9999999987 9999999999998888899999999999999999999999999999999
Q ss_pred ECCCCce-eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc--------CCCCCceeEeCC-CCCEEEEEcCC
Q psy16005 86 DTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP--------IDYEPSSISLDH-EHGLVAVGGAD 154 (248)
Q Consensus 86 d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~ 154 (248)
++..... .....+..|...+.+++| +++++++++.++ +++|+.. ....+..+.+.| +++.+++++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 9876531 123566789999999999 577899988777 4899832 345567788877 89999999999
Q ss_pred CeEEEEECCceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 155 SKISIVENGAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 155 ~~i~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
+.+++||.++....+. +...+.+++|+|++. +++++.|+.|++||+++++....+. .|...|.+++|+|++ .|++
T Consensus 165 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~ 241 (313)
T 3odt_A 165 KTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-DIVS 241 (313)
T ss_dssp SCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-CEEE
T ss_pred CCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-CEEE
Confidence 9999999877777665 566789999999998 8999999999999999988765554 799999999999999 5889
Q ss_pred EcCCCeEEEEECCCCC
Q psy16005 233 SDAHRKVVLYRVPDFE 248 (248)
Q Consensus 233 ~~~d~~i~vw~~~~~~ 248 (248)
++.||.|++||+++++
T Consensus 242 ~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 242 CGEDRTVRIWSKENGS 257 (313)
T ss_dssp EETTSEEEEECTTTCC
T ss_pred EecCCEEEEEECCCCc
Confidence 9999999999998764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=237.53 Aligned_cols=232 Identities=13% Similarity=0.162 Sum_probs=193.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++.... +..|...|.+++|+|++++|++++.||.|++||++.++
T Consensus 50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 4788999999999999999987 89999999988875443 35789999999999999999999999999999998776
Q ss_pred e--eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc----------------------------CCCCCceeE
Q psy16005 92 H--ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP----------------------------IDYEPSSIS 140 (248)
Q Consensus 92 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~----------------------------~~~~~~~~~ 140 (248)
. ........|...|.+++|+|++++|++++.++ +++|++. ....+.+++
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 3 12233467889999999999999999999776 6999952 134567899
Q ss_pred eCCCCCEEEEEcCCCeEEEEE--CCceeeeecc-cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC--CC----------
Q psy16005 141 LDHEHGLVAVGGADSKISIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNN--KS---------- 205 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~--~~---------- 205 (248)
|+|+++++++++.|+.|++|| .++.+..+.. ...+.+++|+|+++++++| .|+.|++|++.+ ++
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence 999999999999999999999 5666666654 4478999999999988888 899999999987 31
Q ss_pred ----------------------CC------CcccccCCcCeEEEEEc-CCC---cEEEEEcCCCeEEEEECCCC
Q psy16005 206 ----------------------LS------PKAELDHLGPVTDCSFS-PSN---EYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 206 ----------------------~~------~~~~~~~~~~v~~~~~s-~~~---~~l~~~~~d~~i~vw~~~~~ 247 (248)
.. .....+|...|++++|+ ++| ++|++++.||.|++|+++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp --------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 00 22223799999999966 666 99999999999999998653
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=231.68 Aligned_cols=230 Identities=13% Similarity=0.205 Sum_probs=201.4
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~ 88 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++....+. +...+.+++|+|+++++++++.+ |.|++||+.
T Consensus 72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 4788999999999999999986 9999999999999888886 88899999999999999999998 999999997
Q ss_pred CCcee---------eeeeccCCCC--CeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCC
Q psy16005 89 NKEHI---------LKNEFHPIGG--PIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEH 145 (248)
Q Consensus 89 ~~~~~---------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~ 145 (248)
.+... ....+..|.. .+.+++|+|++++|++++.++ +.+|++.. ...+.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL 230 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence 65421 1122334444 899999999999999999877 59999864 3457789999999
Q ss_pred CEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCC--------------cEEEEEcCCCCCCCc
Q psy16005 146 GLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS--------------KVHIYELNNKSLSPK 209 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~--------------~v~i~d~~~~~~~~~ 209 (248)
+++++++.|+.|++|| .++.+..+.....+.+++|+|+++++++++.++ .+++||..+++....
T Consensus 231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 231 TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred CEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 9999999999999999 566777777888899999999999999999888 899999999887665
Q ss_pred ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 210 AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 210 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
+. +|...|.+++|+|++++|++++.||.|++|++++
T Consensus 311 ~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 311 VQ-GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ee-cccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 54 7999999999999999999999999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=240.65 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=193.7
Q ss_pred ccCCcEEEEeCCCCC-EEEEe----------C-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCcEEEEEccCC
Q psy16005 16 QRGQPIVLGGDPKGK-NFLYT----------N-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGFYIASGDISG 80 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~-~l~~~----------~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 80 (248)
+...+.+++|+|+++ +++++ + |+.|++||+.+++ ....+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 335688999999997 88888 5 8899999998876 33333 6889999999999999999999999
Q ss_pred eEEEEECCCC--ceeeeeeccCCCCCeeEEEEecC-CCEEEEEeCCc-EEEEEccCCC-------------------CCc
Q psy16005 81 KVRIWDTVNK--EHILKNEFHPIGGPIKDIAWSPD-NQRMISIVENG-AKVSSLPIDY-------------------EPS 137 (248)
Q Consensus 81 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~-~~i~~~~~~~-------------------~~~ 137 (248)
.|++||+... .......+..|...|.+++|+|+ +++|++++.++ +++|++.... .+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 9999999872 11133567789999999999998 89999998776 6999986432 456
Q ss_pred eeEeCCC-CCEEEEEcCCCeEEEEE--CCceeeeecc-------cCCCceEEEcCCC-CEEEEEcCCC---cEEEEEcCC
Q psy16005 138 SISLDHE-HGLVAVGGADSKISIVE--NGAKVSSLPI-------DYEPSSISLDHEH-GLVAVGGADS---KVHIYELNN 203 (248)
Q Consensus 138 ~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~~~~~~~-------~~~~~~~~~s~~~-~~l~~~~~d~---~v~i~d~~~ 203 (248)
+++|+|+ +.++++++.|+.|++|| .++.+..+.. ...+.+++|+|++ .++++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 8899999 78999999999999999 4555666654 4668999999997 5899999998 999999998
Q ss_pred CCCCCcccc-cCCcCeEEEEEcC-CCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAEL-DHLGPVTDCSFSP-SNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+........ +|...|.+++|+| ++++|++++.|+.|++||+++++
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE 296 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc
Confidence 754444444 7999999999999 89999999999999999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=232.21 Aligned_cols=232 Identities=16% Similarity=0.232 Sum_probs=190.7
Q ss_pred ccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeee-------------cCCcceEEEEECc-CCcEEEEEc
Q psy16005 14 RTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYT-------------EHSCAVNVAKYSP-SGFYIASGD 77 (248)
Q Consensus 14 ~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-------------~~~~~v~~~~~s~-~~~~l~~~~ 77 (248)
..|.+.|.+++|+| ++++|++++ |+.|++||+.+++....+. +|...|.+++|+| ++++|++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 45899999999999 999999987 9999999999877655543 4999999999999 788999999
Q ss_pred cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC---CEEEEEeCCc-EEEEEccC----------CCCCceeEeCC
Q psy16005 78 ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN---QRMISIVENG-AKVSSLPI----------DYEPSSISLDH 143 (248)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~ 143 (248)
.||.|++||+.+++...... +...+.++.|+|.+ .++++++.++ +.+|++.. ...+.+++++|
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred CCCeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 99999999999987653332 56789999999854 4888888766 69999863 34567899999
Q ss_pred CCC-EEEEEcCCCeEEEEECCc---eeeee----------------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 144 EHG-LVAVGGADSKISIVENGA---KVSSL----------------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 144 ~~~-~~~~~~~~~~i~~~~~~~---~~~~~----------------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
+++ ++++++.|+.|++||... ....+ .+...+.+++|+|++++|++++.||.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 998 689999999999999432 22222 2455688999999999999999999999999987
Q ss_pred CCCCCc----------------------------------------------ccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 204 KSLSPK----------------------------------------------AELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 204 ~~~~~~----------------------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
++.... ...+|...|++++|+|++++|++++.||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 653211 1125888999999999999999999999
Q ss_pred eEEEEECCCCC
Q psy16005 238 KVVLYRVPDFE 248 (248)
Q Consensus 238 ~i~vw~~~~~~ 248 (248)
.|++||+++++
T Consensus 357 ~i~iw~~~~~~ 367 (408)
T 4a11_B 357 NILAWVPSLYE 367 (408)
T ss_dssp CEEEEEECC--
T ss_pred eEEEEeCCCCC
Confidence 99999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=247.59 Aligned_cols=229 Identities=8% Similarity=0.000 Sum_probs=180.5
Q ss_pred ccCCcEEEEeCCCC---------CEEEE-------------------eC-CcEEEEEecCCCcee----eeeecCCcceE
Q psy16005 16 QRGQPIVLGGDPKG---------KNFLY-------------------TN-GNSVIIRNIENPAIS----DIYTEHSCAVN 62 (248)
Q Consensus 16 ~~~~v~~~~~s~~~---------~~l~~-------------------~~-~~~v~v~~~~~~~~~----~~~~~~~~~v~ 62 (248)
+.+.|.+++|+|++ ++||+ ++ |+.|+||++.+++.. ..+..|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 35678888888876 56655 33 678999999877642 33557788999
Q ss_pred EEEECcC------CcEEEEEccCCeEEEEECCCCcee---------eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EE
Q psy16005 63 VAKYSPS------GFYIASGDISGKVRIWDTVNKEHI---------LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AK 126 (248)
Q Consensus 63 ~~~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~ 126 (248)
+++|+|+ +.+||+++.||+|++||+..+... ....+.+|...|.+++|++++ .|++++.|+ ++
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence 9999996 579999999999999999876421 123567889999999999864 788888877 59
Q ss_pred EEEccCC-----------CCCcee--EeCCCC-CEEEEEcCCCeEEEEECC--ceeeeeccc---CCCceEEEcCCCCEE
Q psy16005 127 VSSLPID-----------YEPSSI--SLDHEH-GLVAVGGADSKISIVENG--AKVSSLPID---YEPSSISLDHEHGLV 187 (248)
Q Consensus 127 i~~~~~~-----------~~~~~~--~~~~~~-~~~~~~~~~~~i~~~~~~--~~~~~~~~~---~~~~~~~~s~~~~~l 187 (248)
+|++... ..+.++ .+++++ +++++++.|++|++||.. +....+..+ ..+.+++|+|+++.+
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 9998632 335666 567887 899999999999999943 333333222 247889999999999
Q ss_pred EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 188 AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++++.|+.|++||++++.....+. +|.+.|++++|+|++++|++|+.|++|++||+..
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999999999999999988765544 7999999999999999999999999999999753
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=234.81 Aligned_cols=233 Identities=11% Similarity=0.105 Sum_probs=192.1
Q ss_pred cccccccCCcEEEEeCCC---CC--EEEEeCCcEEEEEecCCCceeeeeec-----CCcceEEEEECcC----CcEEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPK---GK--NFLYTNGNSVIIRNIENPAISDIYTE-----HSCAVNVAKYSPS----GFYIASG 76 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~---~~--~l~~~~~~~v~v~~~~~~~~~~~~~~-----~~~~v~~~~~s~~----~~~l~~~ 76 (248)
.+..+|.+.|.+++|+|+ +. ++++++++.|++|++.+++....+.. |...|.+++|+|+ +++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 455679999999999984 33 45555688999999998877766653 5578999999998 6799999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEcc-------------CCCCCceeEe
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLP-------------IDYEPSSISL 141 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~-------------~~~~~~~~~~ 141 (248)
+.||.|++||+.+++.+ ..+.+|...|.+++|+| ++++|++++.++ +++|+++ ....+.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQCI--KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCEE--EEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceEe--eeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 99999999999988754 56678999999999999 899999999776 6999974 2345778999
Q ss_pred CCCCCEEEEEcCCCeEEEEECC--ceeeeec-----------------------------ccCCCceEEEcCCCCEEEEE
Q psy16005 142 DHEHGLVAVGGADSKISIVENG--AKVSSLP-----------------------------IDYEPSSISLDHEHGLVAVG 190 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~-----------------------------~~~~~~~~~~s~~~~~l~~~ 190 (248)
+|+++++++++.|+.|++||.. +....+. +...+.+++|+ +++++++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 9999999999999999999943 2222111 56678999998 7799999
Q ss_pred cCCCcEEEEEcCCCCCC-------------CcccccCCcCeEEEEEcCC--CcEEEEEcCCCeEEEEECCCC
Q psy16005 191 GADSKVHIYELNNKSLS-------------PKAELDHLGPVTDCSFSPS--NEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 191 ~~d~~v~i~d~~~~~~~-------------~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+.|+.|++||+++.+.. ......|...|.+++|+|+ +++|++++.||.|++||++++
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 99999999999887541 1122257888999999999 999999999999999999875
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=233.88 Aligned_cols=226 Identities=14% Similarity=0.217 Sum_probs=183.6
Q ss_pred ccccCCcEEEEeCCC---CCEEEEeC-CcEEEEEecCC-Ccee-eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 14 RTQRGQPIVLGGDPK---GKNFLYTN-GNSVIIRNIEN-PAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~---~~~l~~~~-~~~v~v~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
..|.+.|.+++|+|+ |++|++++ |+.|++||+.+ +... ..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 568999999999999 58999987 99999999987 5444 678899999999999999999999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEE--ecCCCEEEEEeCCc-EEEEEccCCCCCc---------------------------
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAW--SPDNQRMISIVENG-AKVSSLPIDYEPS--------------------------- 137 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~-~~i~~~~~~~~~~--------------------------- 137 (248)
++++.. .+..|...|.+++| +|++++|++++.++ +++|+++......
T Consensus 116 ~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 192 (368)
T 3mmy_A 116 SSNQAI---QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGL 192 (368)
T ss_dssp TTTEEE---EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCE
T ss_pred CCCCce---eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcE
Confidence 988754 34568999999999 88999999999777 5999986443221
Q ss_pred ------------------------eeEeCCCCC----EEEEEcCCCeEEEEECC-----ceeeeecccC-----------
Q psy16005 138 ------------------------SISLDHEHG----LVAVGGADSKISIVENG-----AKVSSLPIDY----------- 173 (248)
Q Consensus 138 ------------------------~~~~~~~~~----~~~~~~~~~~i~~~~~~-----~~~~~~~~~~----------- 173 (248)
.+.+.++.. .+++++.|+.+++|+.. .....+..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence 122222222 28899999999999933 2333333322
Q ss_pred --CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 174 --EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 174 --~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
.+.+++|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|++++|++++.|+..+.|+
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 58999999999999999999999999999988765554 7899999999999999999999887554444
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=242.13 Aligned_cols=239 Identities=13% Similarity=0.174 Sum_probs=189.9
Q ss_pred ecccccccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCC---Cce---eeeeecCCcceEEEEECcCCcEEEEEccC
Q psy16005 8 IFATLPRTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIEN---PAI---SDIYTEHSCAVNVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~---~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 79 (248)
.+..+..+|.+.|.+++|+| ++++|++++ |+.|++||+.+ +.. ...+ .|...|.+++|+|++++|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 34556567889999999999 999999987 99999999876 432 2222 689999999999999999999999
Q ss_pred CeEEEEECC---CCceee--------eeeccC--CCCCeeEEE--EecCCCEEEEEeCCc-EEEEEccC-----------
Q psy16005 80 GKVRIWDTV---NKEHIL--------KNEFHP--IGGPIKDIA--WSPDNQRMISIVENG-AKVSSLPI----------- 132 (248)
Q Consensus 80 g~i~iwd~~---~~~~~~--------~~~~~~--~~~~v~~~~--~~~~~~~l~~~~~~~-~~i~~~~~----------- 132 (248)
|.|++||++ .++... ...+.. +...+.++. ++++++++++++.++ +++|+++.
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 999999995 443221 122222 566777777 568899999999877 59999742
Q ss_pred -CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeee--cccCCCceEEEc----CCCCEEEEEcCCCcEEEEEcCC
Q psy16005 133 -DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSL--PIDYEPSSISLD----HEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~--~~~~~~~~~~~s----~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
...+.+++|+|+++++++++.|+.|++|| .++.+..+ .+...+.+++++ |++.+|++|+.|+.|++||+++
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 35678999999999999999999999999 45556655 445568889555 5688999999999999999998
Q ss_pred CCCCCccc-----------------------cc--CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAE-----------------------LD--HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~-----------------------~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++....+. .+ |...|++++|+ ++++|++++.|+.|++||+.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 76432222 11 67789999999 78999999999999999998763
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=234.31 Aligned_cols=230 Identities=12% Similarity=0.185 Sum_probs=191.5
Q ss_pred ccccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCC-------ceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEE
Q psy16005 14 RTQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENP-------AISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVR 83 (248)
Q Consensus 14 ~~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 83 (248)
.+|.+.|.+++|+| ++++|++++ |+.|++|++.++ +....+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence 35889999999999 899999987 999999999987 5677788999999999999998 6999999999999
Q ss_pred EEECCCCceeeeeec--cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCCEE
Q psy16005 84 IWDTVNKEHILKNEF--HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHGLV 148 (248)
Q Consensus 84 iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~~~ 148 (248)
+||+++++.+ ..+ ..|...|.+++|+|++++|++++.++ +++|+++.. ..+..+.|+|+++++
T Consensus 158 iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 158 VWDVGTGAAV--LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEETTTTEEE--EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEECCCCCcc--EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 9999998755 444 77999999999999999999999877 599997521 126788999999999
Q ss_pred EEE---cCCCeEEEEECCc--e---eeeecccCCCceEEEcCCCCEEE-EEcCCCcEEEEEcCCCCCCCccc--ccCCcC
Q psy16005 149 AVG---GADSKISIVENGA--K---VSSLPIDYEPSSISLDHEHGLVA-VGGADSKVHIYELNNKSLSPKAE--LDHLGP 217 (248)
Q Consensus 149 ~~~---~~~~~i~~~~~~~--~---~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~ 217 (248)
+++ +.++.|++||... . ...+.+...+.+++|+|++++|+ +|+.|+.|++||+.+++...... ..|...
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 999 7999999999332 2 23334566789999999999886 55679999999999887422222 235689
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|.+++|+|++.++++ .++.+++|++.++
T Consensus 316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEeccccccee--cceeEEEEEcCCC
Confidence 999999999998764 5669999998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=238.14 Aligned_cols=226 Identities=15% Similarity=0.194 Sum_probs=191.5
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
|.+.|.+++|+|++++|++++ ++.|++|| .+++....+..|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 184 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM- 184 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE-
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-
Confidence 677999999999999999986 89999999 677888888899999999999999999999999999999999988755
Q ss_pred eeeccCCCCC---------------eeEEEEecCCCEEEEEeCCcEEEEEccC----------CCCCceeEeCCCCCEEE
Q psy16005 95 KNEFHPIGGP---------------IKDIAWSPDNQRMISIVENGAKVSSLPI----------DYEPSSISLDHEHGLVA 149 (248)
Q Consensus 95 ~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~ 149 (248)
..+..+... +.+++|+|++..++.+.++.+.+|++.. ...+.+++++|++++++
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 185 -QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp -EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred -EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence 344444454 9999999987655444455579999764 34567899999999999
Q ss_pred EEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 150 VGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
+++.|+.|++|| .++....+. +...+.+++|+|++ ++++++.|+.|++||+++++...... .|...|.+++|+|+
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQD 341 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTT
T ss_pred EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCC
Confidence 999999999999 444555554 56778999999999 99999999999999999888765554 68889999999999
Q ss_pred CcEEEEEcCCCeEEEEECCC
Q psy16005 227 NEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~~ 246 (248)
+++|++++.||.|++||+++
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp SSEEEEEETTSCEEEEECHH
T ss_pred CCEEEEEECCCeEEEEECCC
Confidence 99999999999999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=235.15 Aligned_cols=227 Identities=14% Similarity=0.209 Sum_probs=187.5
Q ss_pred cccCCcEEEEeCCCCC-EEEEeC-CcEEEEEec----CCCc------eeeeeec----------CCcceEEEEECcCCcE
Q psy16005 15 TQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNI----ENPA------ISDIYTE----------HSCAVNVAKYSPSGFY 72 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~----~~~~------~~~~~~~----------~~~~v~~~~~s~~~~~ 72 (248)
.|.+.|.+++|+|+++ +|++++ |+.|++|++ .+++ ....+.. |...|.+++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 3568999999999999 999987 899999999 8877 4444443 6779999999999999
Q ss_pred EEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCC----------C------
Q psy16005 73 IASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDY----------E------ 135 (248)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~----------~------ 135 (248)
|++++.||.|++|| .+++.. ..+..|...|.+++|+|++++|++++.++ +++|++.... .
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALL--NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEE--EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEeCCCeEEEEe-CCCCee--eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 99999999999999 445433 56778999999999999999999998766 6999985321 1
Q ss_pred ---------CceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 136 ---------PSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 136 ---------~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
+.++.+++++ .+++++.++.|++|| .++.+..+. +...+.+++|+|++++|++++.|+.|++||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp ------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred ccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 6778888875 588889999999999 344444443 566789999999999999999999999999999
Q ss_pred CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 204 KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 204 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++....+. .|...|.+++|+|++ ++++++.|+.|++||++++
T Consensus 279 ~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 320 (425)
T 1r5m_A 279 GNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN 320 (425)
T ss_dssp BSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT
T ss_pred CccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC
Confidence 88765554 688999999999999 9999999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=259.76 Aligned_cols=229 Identities=13% Similarity=0.177 Sum_probs=199.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+++|+|+|+++++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence 35889999999999999999987 99999999999999999999999999999999999999999999999999999885
Q ss_pred eeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
+ ..+.+|...|.+++|+| ++..+++++.++ +++|++.. ...+.+++|+|+++.+++++.|+.|++
T Consensus 692 ~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 692 V--HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp E--EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred E--EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 5 56778999999999999 455788888776 69999753 356778999999999999999999999
Q ss_pred EE--CCceeeee--------------------------------------------------------cccCCCceEEEc
Q psy16005 160 VE--NGAKVSSL--------------------------------------------------------PIDYEPSSISLD 181 (248)
Q Consensus 160 ~~--~~~~~~~~--------------------------------------------------------~~~~~~~~~~~s 181 (248)
|| .++....+ .+...+.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 99 23222111 233457789999
Q ss_pred CCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 182 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|+++++++++.|+.|++||+.++....... +|...|.+++|+|++++|++++.||.|++|++.
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 999999999999999999999887765554 799999999999999999999999999999964
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=236.75 Aligned_cols=234 Identities=14% Similarity=0.154 Sum_probs=177.6
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc---eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA---ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
...+. .|.+.|.+++|+|++++|++++ |+.|++||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 48 ~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 126 (377)
T 3dwl_C 48 ARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV 126 (377)
T ss_dssp CCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEE
T ss_pred EEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEE
Confidence 33443 5889999999999999999987 9999999999877 56667789999999999999999999999999999
Q ss_pred EECCCCcee-eeeeccC-CCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc---------------------------CCC
Q psy16005 85 WDTVNKEHI-LKNEFHP-IGGPIKDIAWSPDNQRMISIVENG-AKVSSLP---------------------------IDY 134 (248)
Q Consensus 85 wd~~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~---------------------------~~~ 134 (248)
||+++++.. ....+.. |...|.+++|+|++++|++++.++ +++|++. +..
T Consensus 127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (377)
T 3dwl_C 127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG 206 (377)
T ss_dssp CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS
T ss_pred EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCc
Confidence 999887631 1244555 899999999999999999999876 6999983 344
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE--CCce----eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC-
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE--NGAK----VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL- 206 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~----~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~- 206 (248)
.+.+++|+|+++++++++.|+.|++|| .++. +..+. +...+.+++|+|++++|++|+.++.+ +|+......
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~ 285 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWA 285 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---C
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceE
Confidence 578899999999999999999999999 3443 34443 45568999999999999999876655 676642110
Q ss_pred --------------------------------------------------CCcccccCCcCeEEEEEcCCC-c---EEEE
Q psy16005 207 --------------------------------------------------SPKAELDHLGPVTDCSFSPSN-E---YLVA 232 (248)
Q Consensus 207 --------------------------------------------------~~~~~~~~~~~v~~~~~s~~~-~---~l~~ 232 (248)
.......|...|+++++.+.. . .|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s 365 (377)
T 3dwl_C 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTS 365 (377)
T ss_dssp CSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEE
T ss_pred EEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEe
Confidence 000111388999999976654 2 6999
Q ss_pred EcCCCeEEEEEC
Q psy16005 233 SDAHRKVVLYRV 244 (248)
Q Consensus 233 ~~~d~~i~vw~~ 244 (248)
++.||.|++||+
T Consensus 366 ~g~Dg~i~iWdl 377 (377)
T 3dwl_C 366 SGTDGRVVLWTL 377 (377)
T ss_dssp EETTSEEEEECC
T ss_pred ecCCCcEEEecC
Confidence 999999999986
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=239.77 Aligned_cols=229 Identities=13% Similarity=0.051 Sum_probs=183.9
Q ss_pred cccCCcEEEEeCCC------CCEEEEeC-CcEEEEEecCCCce-----------eeeeecCCcceEEEEECcCCcEEEEE
Q psy16005 15 TQRGQPIVLGGDPK------GKNFLYTN-GNSVIIRNIENPAI-----------SDIYTEHSCAVNVAKYSPSGFYIASG 76 (248)
Q Consensus 15 ~~~~~v~~~~~s~~------~~~l~~~~-~~~v~v~~~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~ 76 (248)
+|.+.|.+++|+|+ +.+||+++ |++|++||+.+++. ...+.+|...|++++|+|++ .|++|
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasg 283 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCG 283 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEE
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEE
Confidence 45788999999997 57899886 99999999986542 23567899999999999864 79999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEE--EEecCC-CEEEEEeCCc-EEEEEccCC------------CCCceeE
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDI--AWSPDN-QRMISIVENG-AKVSSLPID------------YEPSSIS 140 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~~~-~~i~~~~~~------------~~~~~~~ 140 (248)
+.||+|++||+++++. ....+.+|...|.++ +|+|++ ++|++++.|+ +++|+++.. ..+.+++
T Consensus 284 s~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~ 362 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV 362 (524)
T ss_dssp ETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE
T ss_pred eCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceE
Confidence 9999999999987643 224567899999999 578887 8999999887 599998531 1367899
Q ss_pred eCCCCCEEEEEcCCCeEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC----------
Q psy16005 141 LDHEHGLVAVGGADSKISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS---------- 207 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~---------- 207 (248)
|+|+++.+++++.|+.|++|| .+..+..+ .+...+.+++|+|++++|++|+.|++|++||+..+...
T Consensus 363 fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~ 442 (524)
T 2j04_B 363 YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQK 442 (524)
T ss_dssp EETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CC
T ss_pred eCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcccee
Confidence 999999999999999999999 33443433 46678999999999999999999999999986321000
Q ss_pred ---------------------------------CcccccCCcCeEEEEEcCCCc---EEEEEcCCCeEEEEECC
Q psy16005 208 ---------------------------------PKAELDHLGPVTDCSFSPSNE---YLVASDAHRKVVLYRVP 245 (248)
Q Consensus 208 ---------------------------------~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~i~vw~~~ 245 (248)
.....+|...|.+|+|+|+++ .+++|+.||.|+||+++
T Consensus 443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 001124778999999999964 99999999999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=232.06 Aligned_cols=225 Identities=11% Similarity=0.143 Sum_probs=179.6
Q ss_pred cccCCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeeec---CCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYTE---HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|.+.|.+++|+| ++++|++++ |+.|++||+.+ +....+.. |...|.+++|+|++++|++++.||.|++||++
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~- 193 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD- 193 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-
Confidence 5889999999999 678888886 99999999986 44444543 44789999999999999999999999999994
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccC-------------CCCCceeEeCC-CCCEEEEEcC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPI-------------DYEPSSISLDH-EHGLVAVGGA 153 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~-------------~~~~~~~~~~~-~~~~~~~~~~ 153 (248)
++. ...+..|...|.+++|+|+++ ++++++.++ +++|+++. ...+.+++|+| +++++++++.
T Consensus 194 ~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 194 GHE--IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp SCE--EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES
T ss_pred CCE--EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC
Confidence 443 356678999999999999999 899998876 59999864 34567899999 9999999999
Q ss_pred CCeEEEEE--CCceeeeecc--------cC----------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc
Q psy16005 154 DSKISIVE--NGAKVSSLPI--------DY----------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD 213 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~--------~~----------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 213 (248)
|+.|++|| .++....+.. .. ....++++|++++ +++.|+.|++||+.+++.+..+...
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 99999999 3333333221 11 1223455555555 6678999999999999886665522
Q ss_pred -CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 214 -HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 214 -~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
|...+..++|+|++++|++++ |+.|++||+++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 567788889999999999997 99999999975
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=230.56 Aligned_cols=226 Identities=17% Similarity=0.208 Sum_probs=191.4
Q ss_pred cccCC-cEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 15 TQRGQ-PIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 15 ~~~~~-v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
+|.+. +.++.+ +++++++++ |+.|++||+.+++....+.+|.+.|.+++|+|++ .|++|+.||+|++||+++++.
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC 195 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE
T ss_pred CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE
Confidence 35555 566666 567888886 9999999999999999999999999999999987 899999999999999999875
Q ss_pred eeeeeccCCCCCeeEEEEe--cCCCEEEEEeCCc-EEEEEccCCCCC-------------------------------ce
Q psy16005 93 ILKNEFHPIGGPIKDIAWS--PDNQRMISIVENG-AKVSSLPIDYEP-------------------------------SS 138 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~-~~i~~~~~~~~~-------------------------------~~ 138 (248)
+ ..+.+|...|.+++|+ ++++++++++.++ +++|+++..... ..
T Consensus 196 ~--~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 196 T--HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp E--EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred E--EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 4 5677899999999998 4778999999777 599998654321 12
Q ss_pred eEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC
Q psy16005 139 ISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
.+++++++++++++.|+.|++|| .++.+..+. +...+.+++|+|+++++++|+.||.|++||+++++....+. +|.
T Consensus 274 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~ 352 (464)
T 3v7d_B 274 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHT 352 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCC
Confidence 34567789999999999999999 455566655 56678999999999999999999999999999988766554 799
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..|.+++|+ +++|++++.||.|++||+.+++
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 999999997 5799999999999999998753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=232.13 Aligned_cols=233 Identities=15% Similarity=0.218 Sum_probs=192.3
Q ss_pred ccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCC----------CceeeeeecCCcceEEEEECcCCc-EEEEEccCC
Q psy16005 14 RTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIEN----------PAISDIYTEHSCAVNVAKYSPSGF-YIASGDISG 80 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg 80 (248)
..|.+.|++++|+|+ +.+|++++ +|.|++|++.+ .+....+.+|...|.+++|+|++. +|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 458899999999997 67888876 89999999986 566777889999999999999988 999999999
Q ss_pred eEEEEECCCCcee-----eeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccCC-------------CCCceeE
Q psy16005 81 KVRIWDTVNKEHI-----LKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPID-------------YEPSSIS 140 (248)
Q Consensus 81 ~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~~-------------~~~~~~~ 140 (248)
.|++||+..+... ....+..|...|.+++|+| ++..|++++.++ +++|+++.. ..+.+++
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 9999999874321 1245668899999999999 677888888766 599998643 3457889
Q ss_pred eCCCCC-EEEEEcCCCeEEEEEC---Cceeeeec-ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCC--------
Q psy16005 141 LDHEHG-LVAVGGADSKISIVEN---GAKVSSLP-IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSL-------- 206 (248)
Q Consensus 141 ~~~~~~-~~~~~~~~~~i~~~~~---~~~~~~~~-~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~-------- 206 (248)
|+|++. ++++++.|+.|++||. ...+..+. +...+.+++|+|+++ +|++++.|+.|++||+.....
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 364 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 364 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccc
Confidence 999887 7889999999999993 34455554 667799999999985 799999999999999987321
Q ss_pred -----CCcccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCC
Q psy16005 207 -----SPKAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 207 -----~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~ 246 (248)
......+|...|++++|+|+++ +|++++.||.|++|++.+
T Consensus 365 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 1112236888999999999999 899999999999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=227.99 Aligned_cols=227 Identities=12% Similarity=0.088 Sum_probs=186.8
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc---eeeeeec-------------------------------------
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA---ISDIYTE------------------------------------- 56 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~---~~~~~~~------------------------------------- 56 (248)
..++.+++|+|+|++|+++.++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 357889999999998888889999999999988 5544442
Q ss_pred -----------------CCcceEEEEECcCCcEE-EEEccCCeEEEEECC--CCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 57 -----------------HSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTV--NKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 57 -----------------~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
|.+.|.+++|+|++++| ++++.||.|++||+. +++.+.......|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33369999999999996 899999999999998 7765543333467789999999999999
Q ss_pred EEEEeCCc-EEEEEccC--------------CCCCceeEeCCC---CCEEEEEcCCCeEEEEE--CCceeeee--cccCC
Q psy16005 117 MISIVENG-AKVSSLPI--------------DYEPSSISLDHE---HGLVAVGGADSKISIVE--NGAKVSSL--PIDYE 174 (248)
Q Consensus 117 l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~--~~~~~~~~--~~~~~ 174 (248)
|++++.++ +.+|++.. ...+.+++|+|+ ++++++++.|+.|++|| .++.+..+ .+...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 99999877 47887632 234678899999 99999999999999999 45555543 36677
Q ss_pred CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------------------------cCCcCeEEEEEcCCCcEE
Q psy16005 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL------------------------DHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l 230 (248)
+.+++|+ ++++|++++.|+.|++||+++++....+.. .....|.+++|+|++++|
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 8999999 999999999999999999999876544321 223568999999999999
Q ss_pred EEEc-CCCeEEEEEC
Q psy16005 231 VASD-AHRKVVLYRV 244 (248)
Q Consensus 231 ~~~~-~d~~i~vw~~ 244 (248)
++++ .|+.|++|++
T Consensus 323 ~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 323 AFFVEATKCIIILEM 337 (450)
T ss_dssp EEEETTCSEEEEEEE
T ss_pred EEEECCCCeEEEEEe
Confidence 9998 8999999999
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=228.86 Aligned_cols=208 Identities=15% Similarity=0.246 Sum_probs=174.2
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEE
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 117 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 117 (248)
..+..|+.......+.+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.. ..+..|...|.+++|+|++++|
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--EEEECCCTTCCCCEECTTSSEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--eEEecCCCCEEEEEECCCCCEE
Confidence 34456777777778889999999999999999999999999999999999988754 5677889999999999999999
Q ss_pred EEEeCCcE-EEEEccC-----------------CCCCceeEeCCC-CCEEEEEcCCCeEEEEE--CCceeeee------c
Q psy16005 118 ISIVENGA-KVSSLPI-----------------DYEPSSISLDHE-HGLVAVGGADSKISIVE--NGAKVSSL------P 170 (248)
Q Consensus 118 ~~~~~~~~-~i~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~~~~~------~ 170 (248)
++++.++. ++|++.. ...+..+.+.|+ +..+++++.|+.|++|| .++.+..+ .
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 99998774 9999752 233566778876 45799999999999999 45555544 2
Q ss_pred ccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 171 IDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 171 ~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+...+.+++++| ++.+|++|+.|+.|++||++..........+|.+.|.+++|+|++++|++++.|++|++||++++
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 445678899977 88999999999999999998554333444489999999999999999999999999999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=217.84 Aligned_cols=223 Identities=12% Similarity=0.113 Sum_probs=189.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC---ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP---AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.|.+.|.+++|+|+++++++++ |+.+++|++... +....+..|...|.+++| +++++++++.||.|++|| .+
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~ 132 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG 132 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC
Confidence 4788999999999999999987 999999998754 456677889999999999 577999999999999999 33
Q ss_pred ceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
+ ....+..|...+.+++|.| +++.+++++.++ +++|+.. ....+.+++++|++. +++++.++.|++
T Consensus 133 ~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 209 (313)
T 3odt_A 133 S--LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKL 209 (313)
T ss_dssp E--EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEE
T ss_pred c--EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEE
Confidence 3 2356677899999999998 899999998776 5899853 445678899999998 899999999999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
|| .++.+..+. +...+.+++|+|++ .|++++.||.|++||+++++....+. .|...|.+++|+|+++ +++++.|
T Consensus 210 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 210 VDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-EEEEETT
T ss_pred EECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-EEEEeCC
Confidence 99 456666665 56778999999999 58899999999999999998766554 6888999999999998 6678899
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
|.|++|+++++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999865
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=224.82 Aligned_cols=230 Identities=14% Similarity=0.211 Sum_probs=187.2
Q ss_pred CcEEEEeCCCCCEEEE-eC-CcEEEEEecCCC----ceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCc
Q psy16005 19 QPIVLGGDPKGKNFLY-TN-GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~-~~-~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
....++++|+...+++ ++ +|.|++|++... +....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3456888988776664 33 899999998654 23445778999999999999 99999999999999999998874
Q ss_pred e-----eeeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEcc------------CCCCCceeEeCCCCCEEEEEc
Q psy16005 92 H-----ILKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLP------------IDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 92 ~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~ 152 (248)
. .....+.+|...|.+++|+|++ +.|++++.++ +++|++. +...+.+++|+|+++++++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 2 1335677899999999999998 6899988776 6999964 234567899999999999999
Q ss_pred CCCeEEEEE--CCceeeee-c-ccCC-CceEEEcCCCCEEEEE---cCCCcEEEEEcCCCCCC-CcccccCCcCeEEEEE
Q psy16005 153 ADSKISIVE--NGAKVSSL-P-IDYE-PSSISLDHEHGLVAVG---GADSKVHIYELNNKSLS-PKAELDHLGPVTDCSF 223 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~-~-~~~~-~~~~~~s~~~~~l~~~---~~d~~v~i~d~~~~~~~-~~~~~~~~~~v~~~~~ 223 (248)
.|+.|++|| .++.+..+ . +... +.+++|+|++++|++| +.|+.|++||+++.+.. ......|...+.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 999999999 45556655 3 3333 7899999999999999 78999999999987653 2333357788999999
Q ss_pred cCCCcEEEE-EcCCCeEEEEECCCCC
Q psy16005 224 SPSNEYLVA-SDAHRKVVLYRVPDFE 248 (248)
Q Consensus 224 s~~~~~l~~-~~~d~~i~vw~~~~~~ 248 (248)
+|++++|++ ++.|+.|++||+.+++
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSST
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 999999865 5579999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=221.38 Aligned_cols=196 Identities=15% Similarity=0.204 Sum_probs=170.1
Q ss_pred ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EE
Q psy16005 49 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KV 127 (248)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i 127 (248)
+....+.+|.+.|.+++|+|++++|++|+.||+|++||..+++.. ..+..|...|.+++|+|+++.+++++.++. ++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE--HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc--eEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 456678899999999999999999999999999999999888754 455667889999999999999999998775 89
Q ss_pred EEccC----------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcC--CCCE
Q psy16005 128 SSLPI----------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDH--EHGL 186 (248)
Q Consensus 128 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~--~~~~ 186 (248)
|++.. ...+..+.|+|++..+++++.|+.|++|| .++.+..+. +...+.+++++| ++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 98753 23457889999999999999999999999 566666665 556688899987 5789
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
|++|+.||.|++||+++++....+. .|...|.+++|+|++++|++++.|++|++||++++
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999988765544 79999999999999999999999999999999764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=220.52 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=184.6
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
.+.+++|++ +.+++++.|+.|++|++.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.+++.+ ..
T Consensus 95 ~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~ 171 (401)
T 4aez_A 95 YLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RT 171 (401)
T ss_dssp TCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EE
T ss_pred eEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--EE
Confidence 355678876 3455555699999999999988777765 7889999999999999999999999999999988754 56
Q ss_pred ccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CC
Q psy16005 98 FHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVE--NG 163 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~ 163 (248)
+..|...|.+++| +++.+++++.++ +++|+++. ...+.+++|+|+++++++++.|+.|++|| .+
T Consensus 172 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 172 MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS
T ss_pred ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC
Confidence 6789999999999 457899998877 49999862 34578899999999999999999999999 34
Q ss_pred ceeeee-cccCCCceEEEcCCCC-EEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE--EcCCC
Q psy16005 164 AKVSSL-PIDYEPSSISLDHEHG-LVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA--SDAHR 237 (248)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~s~~~~-~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d~ 237 (248)
+....+ .+...+.+++|+|++. ++++++ .|+.|++||+++++..... .+...|.+++|+|+++++++ |+.||
T Consensus 250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--eCCCcEEEEEECCCCCeEEEEeecCCC
Confidence 455555 3667789999999775 666654 7999999999998875544 46778999999999999999 44899
Q ss_pred eEEEEECCCC
Q psy16005 238 KVVLYRVPDF 247 (248)
Q Consensus 238 ~i~vw~~~~~ 247 (248)
.|++|++.++
T Consensus 328 ~i~v~~~~~~ 337 (401)
T 4aez_A 328 NLSIWSYSSS 337 (401)
T ss_dssp EEEEEEEETT
T ss_pred cEEEEecCCc
Confidence 9999998764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=219.16 Aligned_cols=225 Identities=13% Similarity=0.145 Sum_probs=178.8
Q ss_pred ccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~ 92 (248)
..|...|.+++|+|||++|++|++..+++|++.+++....... ..+..+++.++++.+ ++++.|++|++||..+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 4588999999999999999999877789999988766554332 247788888888777 5678889999999999886
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC-CCCc-------eeEeCCCCCEEEE--EcCCCeEEEEEC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID-YEPS-------SISLDHEHGLVAV--GGADSKISIVEN 162 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-~~~~-------~~~~~~~~~~~~~--~~~~~~i~~~~~ 162 (248)
+.. +. +...|.+++|+++ .++++.++.+++|++... .... .+++++ ..+++ ++.+|.|++||.
T Consensus 94 ~~~--~~-~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 94 VSR--IK-VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EEE--EE-CSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EEE--EE-CCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 543 33 5678999999875 466677888999998765 3322 234555 55555 689999999994
Q ss_pred Cce------------------eeee-cccCCCceEEEcCCCCEEEEEcCCCc-EEEEEcCCCCCCCccccc-CCcCeEEE
Q psy16005 163 GAK------------------VSSL-PIDYEPSSISLDHEHGLVAVGGADSK-VHIYELNNKSLSPKAELD-HLGPVTDC 221 (248)
Q Consensus 163 ~~~------------------~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~-v~i~d~~~~~~~~~~~~~-~~~~v~~~ 221 (248)
... +..+ .+...+.+++|+|+|++|++|+.|++ |++||+++++.+..+..+ |...|.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence 321 3333 35677899999999999999999998 999999999887666544 89999999
Q ss_pred EEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 222 SFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 222 ~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+|+|++++|++++.|++|++||++++
T Consensus 247 ~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 247 KWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999999754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=230.51 Aligned_cols=199 Identities=17% Similarity=0.307 Sum_probs=167.8
Q ss_pred eeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EE
Q psy16005 50 ISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AK 126 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~ 126 (248)
.......|...|++++|+| ++++||+|+.||.|+|||+.+++......+.+|.+.|.+++|+| ++++|++++.|+ ++
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3445567888999999999 56899999999999999998887655567788999999999998 688999999877 69
Q ss_pred EEEccCC------------CCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeec-ccCCCceEEEcCCCC-EEEEEc
Q psy16005 127 VSSLPID------------YEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLP-IDYEPSSISLDHEHG-LVAVGG 191 (248)
Q Consensus 127 i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~-~l~~~~ 191 (248)
+|+++.. ..+.+++++|+++++++|+.|+.|++|| .++.+..+. +...+.+++|+|++. +|++|+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence 9998532 2356789999999999999999999999 445554444 466789999999886 788999
Q ss_pred CCCcEEEEEcCCCCCCCcc--cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 192 ADSKVHIYELNNKSLSPKA--ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.|+.|++||+++.+....+ ..+|...|++++|+|+|++|++++.||.|++||+.+++
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 9999999999987654433 23689999999999999999999999999999998753
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=228.92 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=181.5
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecC---CCceeeeeec------------CCcceEEEE--ECcCCcEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIE---NPAISDIYTE------------HSCAVNVAK--YSPSGFYIASG 76 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~---~~~~~~~~~~------------~~~~v~~~~--~s~~~~~l~~~ 76 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+. +++....+.. +...+.++. +++++++|+++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 5789999999999999999987 9999999995 4544443322 445566666 56789999999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC-----------CCCCceeEe---
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-----------DYEPSSISL--- 141 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~--- 141 (248)
+.||.|++||+++++.+.......|...|.+++|+|++++|++++.++ +++|+++. ...+.++++
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 999999999999988664333333789999999999999999999888 69999753 234567744
Q ss_pred -CCCCCEEEEEcCCCeEEEEE--CCceeeeec---------------------------ccCCCceEEEcCCCCEEEEEc
Q psy16005 142 -DHEHGLVAVGGADSKISIVE--NGAKVSSLP---------------------------IDYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 142 -~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~---------------------------~~~~~~~~~~s~~~~~l~~~~ 191 (248)
++++.++++++.|+.|++|| .++.+..+. +...+.+++|+ ++++|++|+
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 45688999999999999999 345444443 23347788999 778999999
Q ss_pred CCCcEEEEEcCCCCCCCcccc------------------------------------cCCcCeEEEEEcCC--CcEEEEE
Q psy16005 192 ADSKVHIYELNNKSLSPKAEL------------------------------------DHLGPVTDCSFSPS--NEYLVAS 233 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~------------------------------------~~~~~v~~~~~s~~--~~~l~~~ 233 (248)
.|+.|++||+.+++....+.. .|...|++++|+++ +.+|+++
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999998876544331 18899999999998 7899999
Q ss_pred cCCCeEEEEE
Q psy16005 234 DAHRKVVLYR 243 (248)
Q Consensus 234 ~~d~~i~vw~ 243 (248)
+.||.|+||+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=214.91 Aligned_cols=195 Identities=18% Similarity=0.249 Sum_probs=161.2
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEE
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVS 128 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~ 128 (248)
..+.+|.+.|.+++|+|+|++|++|+.|++|++||+..+.......+.+|..+|.+++|++ ++++|++++.|+ +++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 3467899999999999999999999999999999997653334467889999999999986 489999999887 5999
Q ss_pred EccCC------------CCCceeEeCCC--CCEEEEEcCCCeEEEEECCc-----eeeeecccCCCceEEEcCC------
Q psy16005 129 SLPID------------YEPSSISLDHE--HGLVAVGGADSKISIVENGA-----KVSSLPIDYEPSSISLDHE------ 183 (248)
Q Consensus 129 ~~~~~------------~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~s~~------ 183 (248)
++... ..+.+++|+|+ +.++++++.|+.|++||... ......+...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 98632 34678899997 88999999999999999332 1122245667899999997
Q ss_pred -------CCEEEEEcCCCcEEEEEcCCCCCC---CcccccCCcCeEEEEEcCCC---cEEEEEcCCCeEEEEECCC
Q psy16005 184 -------HGLVAVGGADSKVHIYELNNKSLS---PKAELDHLGPVTDCSFSPSN---EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 184 -------~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~ 246 (248)
+++|++|+.|+.|++||+++++.. .....+|...|.+++|+|++ ++|++++.|++|++||+++
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 579999999999999999876621 12233799999999999995 8999999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=249.50 Aligned_cols=235 Identities=13% Similarity=0.198 Sum_probs=189.3
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIW 85 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw 85 (248)
+..+. .|.+.|.+++|+|+|+++++++ |+.|++||+.+++....+.+|...|.+++|+| ++.++++|+.||.|++|
T Consensus 650 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 650 LLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 33443 5889999999999999999987 89999999999999999999999999999999 55689999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------------------------
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI-------------------------------- 132 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~-------------------------------- 132 (248)
|+.+++.. ..+.+|...|.+++|+|+++++++++.++ +++|++..
T Consensus 729 d~~~~~~~--~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 729 DLNQKECR--NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp ETTSSSEE--EEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred ECCCcchh--heecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 99998854 56778999999999999999999999877 58998632
Q ss_pred ---------------------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCc
Q psy16005 133 ---------------------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPS 176 (248)
Q Consensus 133 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~ 176 (248)
...+.+++++|+++.+++++.++.+++|+ .+.....+. +...+.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 12345667788888888888888888888 334444433 344567
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcC------------------------------------------------------
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELN------------------------------------------------------ 202 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~------------------------------------------------------ 202 (248)
+++|+|++++|++++.|+.|++||+.
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 77777777777777777777777643
Q ss_pred -------------------------CCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 203 -------------------------NKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 203 -------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+++.... ..+|...|++++|+|++++|++++.||.|++||+.++
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS-GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEE-CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeee-cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 2222222 2268889999999999999999999999999999875
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=226.56 Aligned_cols=225 Identities=10% Similarity=0.178 Sum_probs=179.3
Q ss_pred CCcEEEEeCCCC--CEEEEeC-CcEEEEEecCCCcee---------------------------------------ee-e
Q psy16005 18 GQPIVLGGDPKG--KNFLYTN-GNSVIIRNIENPAIS---------------------------------------DI-Y 54 (248)
Q Consensus 18 ~~v~~~~~s~~~--~~l~~~~-~~~v~v~~~~~~~~~---------------------------------------~~-~ 54 (248)
+.|.+++|+|++ ..|++++ |+.|++|++.+++.. .. .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 889999999998 6777776 999999998764431 12 3
Q ss_pred ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee------eccCCCCCeeEEEEecCC-CEEEEEeCCc-EE
Q psy16005 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN------EFHPIGGPIKDIAWSPDN-QRMISIVENG-AK 126 (248)
Q Consensus 55 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~ 126 (248)
.+|...|.+++|+|++++|++| .||.|++||++........ .+..|...|.+++|+|++ ++|++++.++ ++
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 5799999999999999999999 7999999999854322211 366899999999999998 9999999877 69
Q ss_pred EEEccCCC--------------------------CCceeEeCCCCCEEEEEcCCCeEEEEEC---CceeeeecccCCC--
Q psy16005 127 VSSLPIDY--------------------------EPSSISLDHEHGLVAVGGADSKISIVEN---GAKVSSLPIDYEP-- 175 (248)
Q Consensus 127 i~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~-- 175 (248)
+|+++... .+.+++|+|+++++++++. +.|++||. ++.+..+..+..+
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence 99976432 5778999999999999999 99999993 4455555543322
Q ss_pred --------------ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc-------------------------------
Q psy16005 176 --------------SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA------------------------------- 210 (248)
Q Consensus 176 --------------~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------------------------- 210 (248)
..++|+|++++|++|+.||.|++||+.+++.....
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVD 411 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGG
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccc
Confidence 23999999999999999999999999887643100
Q ss_pred cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 211 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
...+...|..++|+|++++||+++.++ +++|.-+
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 113456789999999999999998765 7777643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=239.66 Aligned_cols=231 Identities=14% Similarity=0.103 Sum_probs=199.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|.+.|.+++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.++..
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~- 131 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA- 131 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-
Confidence 4888999999999999999987 89999999999999999999999999999999999999999999999999987743
Q ss_pred eeeeccCCCCCeeEEEEec-CCCEEEEEeCCc-EEEEEccCC-----------CCCceeEeCC--CCCEEEEEcCCCeEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSP-DNQRMISIVENG-AKVSSLPID-----------YEPSSISLDH--EHGLVAVGGADSKIS 158 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~i~ 158 (248)
....+.+|...|.+++|+| +++.+++++.++ +++|++... ..+..++|+| ++.++++++.|+.|+
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 2356678899999999999 889999999877 599997532 5677889998 999999999999999
Q ss_pred EEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE-EEEEc
Q psy16005 159 IVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY-LVASD 234 (248)
Q Consensus 159 ~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 234 (248)
+|| .++.+..+. +...+.+++|+|+++++++++.||.|++||+.+++...... .|...+.+++|+|+++. +++++
T Consensus 212 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEEEEE
Confidence 999 455566555 55678999999999999999999999999999988765554 57789999999999873 24455
Q ss_pred CCCeEEEEECCCC
Q psy16005 235 AHRKVVLYRVPDF 247 (248)
Q Consensus 235 ~d~~i~vw~~~~~ 247 (248)
.++.+.+|++...
T Consensus 291 ~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 291 FDNGFTVLSLGND 303 (814)
T ss_dssp ETTEEEEEECSCC
T ss_pred eCCCEEEEEcCCC
Confidence 5778899987653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=222.95 Aligned_cols=231 Identities=16% Similarity=0.198 Sum_probs=192.8
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEEC--cCCcEEEEEccCCeEEEE
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYS--PSGFYIASGDISGKVRIW 85 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iw 85 (248)
+..+. +|.+.|.+++|+|++ .+++++ |+.|++||+.+++....+.+|...|.+++|+ ++++++++++.||.|++|
T Consensus 155 ~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 155 LLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred EEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 33443 588999999999998 666665 9999999999999999999999999999998 478999999999999999
Q ss_pred ECCCCceee---------------------eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------C
Q psy16005 86 DTVNKEHIL---------------------KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------D 133 (248)
Q Consensus 86 d~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~ 133 (248)
|++++.... ...+.+|...+.++ +++++++++++.++ +++|++.. .
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 998765321 23456777888776 67889999999776 59999753 4
Q ss_pred CCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 134 YEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
..+.+++++|+++.+++++.|+.|++|| .++.+..+. +...+.+++++ +.+|++++.||.|++||+++++.....
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence 5577899999999999999999999999 566676665 45667888887 579999999999999999987654333
Q ss_pred cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 211 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+...+..++|+|+++++++++ ||.|++||+++++
T Consensus 389 --~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 389 --HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp --ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred --cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 4667788899999999999998 8999999999875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=228.10 Aligned_cols=229 Identities=18% Similarity=0.173 Sum_probs=181.0
Q ss_pred cccC---CcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCceeeee-e---cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 15 TQRG---QPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPAISDIY-T---EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 15 ~~~~---~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.|.+ .|.+++|+|+ +++|++++ |+.|++||+.+++....+ . .|...|.+++|+ ++++|++++.||.|++|
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW 279 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence 3666 8999999999 99999886 999999999999998888 6 899999999999 99999999999999999
Q ss_pred ECCCCceeeee-------------------------------------------eccCCCCCe-----------------
Q psy16005 86 DTVNKEHILKN-------------------------------------------EFHPIGGPI----------------- 105 (248)
Q Consensus 86 d~~~~~~~~~~-------------------------------------------~~~~~~~~v----------------- 105 (248)
|+++++.+... .+.+|...|
T Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i 359 (615)
T 1pgu_A 280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRI 359 (615)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCE
T ss_pred ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeE
Confidence 99866532211 122233333
Q ss_pred ----------------eEEEEecCCC------------------------------------------------------
Q psy16005 106 ----------------KDIAWSPDNQ------------------------------------------------------ 115 (248)
Q Consensus 106 ----------------~~~~~~~~~~------------------------------------------------------ 115 (248)
.+++| ++++
T Consensus 360 ~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 360 MEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438 (615)
T ss_dssp EETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence 33333 1133
Q ss_pred -------------------EEEEEeC-Cc-EEEEEcc-----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 116 -------------------RMISIVE-NG-AKVSSLP-----------IDYEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 116 -------------------~l~~~~~-~~-~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
++++++. ++ +++|++. ....+.+++++|+++++++++.|+.|++||
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 3333333 33 4666653 234567899999999999999999999999
Q ss_pred CCceeeeec--ccCCCceEEEcC----------CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE
Q psy16005 162 NGAKVSSLP--IDYEPSSISLDH----------EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 162 ~~~~~~~~~--~~~~~~~~~~s~----------~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.++.+..+. +...+.+++|+| ++++|++++.||.|++||+.++........+|...|++++|+|+++
T Consensus 519 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~- 597 (615)
T 1pgu_A 519 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST- 597 (615)
T ss_dssp TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-
T ss_pred CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-
Confidence 556666655 667799999999 9999999999999999999987433333447999999999999999
Q ss_pred EEEEcCCCeEEEEECCC
Q psy16005 230 LVASDAHRKVVLYRVPD 246 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~ 246 (248)
|++++.||.|++|++++
T Consensus 598 l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 598 LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTSCEEEEEEC-
T ss_pred eEEecCCceEEEEeeec
Confidence 99999999999999975
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=216.47 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=156.1
Q ss_pred cCCcEEEEeCCCCCEEEEe--C-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYT--N-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~--~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
...+.+++|||||++++++ + |+.|++||+.+++....+ .|...|.+++|+|||++|++++.+ .+.+|+..+++..
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI 210 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcce
Confidence 3457899999999998754 3 799999999999988877 477889999999999999999855 5677777777766
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-----EEEEEcc--------------CCCCCceeEeCCCCCEEEEEcCC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-----AKVSSLP--------------IDYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.......|...+.+++|+|+++.+++++.++ +..|++. ....+.+++|+|++++|++|+.|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 5566677889999999999999999988654 3556643 23457899999999999999999
Q ss_pred CeEEEEE--CCceeeee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 155 SKISIVE--NGAKVSSL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 155 ~~i~~~~--~~~~~~~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
+.|++|| +++.+..+ . |...|++++|+|||++|++|+.|++|+|||+...
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999 56666664 3 6778999999999999999999999999999754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=237.12 Aligned_cols=226 Identities=12% Similarity=0.122 Sum_probs=182.8
Q ss_pred cccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 13 PRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 13 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+|.+.|.+++|+|++++||+|+ |+.|++|+..+.+....+ .|...|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 346889999999999999999997 999999998877665544 5788999999999 8899999999999999999988
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC---------------------CCCceeEeCCC-CCEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---------------------YEPSSISLDHE-HGLV 148 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---------------------~~~~~~~~~~~-~~~~ 148 (248)
.+.. +. |...|.+++|+|+++++++++.++ +++|+++.. ..+.+++|+|+ +..+
T Consensus 91 ~~~~--~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 91 VLTT--VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp EEEE--EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred EEEE--Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 6533 33 668899999999999999999877 599997532 35789999996 4789
Q ss_pred EEEcCCCeEEEEE--CCceeeeeccc-------------------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 149 AVGGADSKISIVE--NGAKVSSLPID-------------------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 149 ~~~~~~~~i~~~~--~~~~~~~~~~~-------------------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
++++.|+.+ +|| .++.+..+..+ ..+.+++|+|+|++|++|+.|+.|++||+++++.+
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 999 44555555433 45899999999999999999999999999988754
Q ss_pred Cc--cc--c-------------cCCcCeEEEEEc----CCC-cEEEEEcCC-----CeEEEEEC
Q psy16005 208 PK--AE--L-------------DHLGPVTDCSFS----PSN-EYLVASDAH-----RKVVLYRV 244 (248)
Q Consensus 208 ~~--~~--~-------------~~~~~v~~~~~s----~~~-~~l~~~~~d-----~~i~vw~~ 244 (248)
.. +. . .|...|.+++|+ |++ ..|++++.| ..+.+|++
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 32 10 0 134579999995 554 456777555 37888884
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=215.00 Aligned_cols=223 Identities=14% Similarity=0.263 Sum_probs=182.3
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
-.+.++||++ +.|++|.|++|+|||..+++....+. +|...|++++|+|+|++|++|+.||.|++||+++++.+ .
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--R 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--E
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--E
Confidence 3567999976 58888889999999999998877665 67788999999999999999999999999999998855 5
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECC-
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISIVENG- 163 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 163 (248)
.+.+|...+.++++ ++..+++++.++. .+|+... ...+..+.+.|+++++++++.|+.+++|+..
T Consensus 184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 67789999988877 4678999998875 8888653 3456678899999999999999999999932
Q ss_pred -c----e-eeeecccCCCceEEEcCCCC-EEEE--EcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 164 -A----K-VSSLPIDYEPSSISLDHEHG-LVAV--GGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 164 -~----~-~~~~~~~~~~~~~~~s~~~~-~l~~--~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+ . .....+...+.+++|+|++. .+++ |+.|+.|++||+.+++...... +...+.++.|+|+++.+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEE
Confidence 2 1 12234566789999999665 5554 4579999999999988765443 456799999999999888764
Q ss_pred --CCCeEEEEECCCCC
Q psy16005 235 --AHRKVVLYRVPDFE 248 (248)
Q Consensus 235 --~d~~i~vw~~~~~~ 248 (248)
.|+.|+|||+.+++
T Consensus 340 g~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMA 355 (420)
T ss_dssp CTTTCCEEEEETTTCC
T ss_pred ecCCCEEEEEECCCCc
Confidence 78999999998864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=241.54 Aligned_cols=232 Identities=13% Similarity=0.132 Sum_probs=174.2
Q ss_pred ccccCCcEEEEeCCC-CCEEEEeC-CcEEEEEecCCCceeeeeecC------------------CcceEEEEECcCCcEE
Q psy16005 14 RTQRGQPIVLGGDPK-GKNFLYTN-GNSVIIRNIENPAISDIYTEH------------------SCAVNVAKYSPSGFYI 73 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~-~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l 73 (248)
..|.+.|.+++|+|+ +..+++++ |+.| +||+.+++....+..| ...|.+++|+|+|++|
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 568899999999996 46777776 8999 9999999888777655 4779999999999999
Q ss_pred EEEccCCeEEEEECCCCceeeeeec---c-------------CCCCCeeEEEEec----CC-CEEEEEeCC------cEE
Q psy16005 74 ASGDISGKVRIWDTVNKEHILKNEF---H-------------PIGGPIKDIAWSP----DN-QRMISIVEN------GAK 126 (248)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~---~-------------~~~~~v~~~~~~~----~~-~~l~~~~~~------~~~ 126 (248)
++++.||.|++||+++++.+....+ . .|...|.+++|++ ++ ..+++++.+ .+.
T Consensus 227 asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~ 306 (902)
T 2oaj_A 227 ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT 306 (902)
T ss_dssp EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence 9999999999999998876532222 1 1345799999964 33 445555432 233
Q ss_pred EEE-----------------------------------------------------------------------ccCCC-
Q psy16005 127 VSS-----------------------------------------------------------------------LPIDY- 134 (248)
Q Consensus 127 i~~-----------------------------------------------------------------------~~~~~- 134 (248)
+|+ +..+.
T Consensus 307 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~ 386 (902)
T 2oaj_A 307 MIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF 386 (902)
T ss_dssp EEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred EEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence 333 21100
Q ss_pred --------------------------------------------------CCceeEeCCCCCEEEEEcCCCeEEEEEC--
Q psy16005 135 --------------------------------------------------EPSSISLDHEHGLVAVGGADSKISIVEN-- 162 (248)
Q Consensus 135 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 162 (248)
.+..++++|+++++++++.|++|++||.
T Consensus 387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~ 466 (902)
T 2oaj_A 387 TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH 466 (902)
T ss_dssp ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence 0112345678899999999999999993
Q ss_pred Ccee----eee--------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC-----------------------
Q psy16005 163 GAKV----SSL--------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS----------------------- 207 (248)
Q Consensus 163 ~~~~----~~~--------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~----------------------- 207 (248)
+... ... .+...+.+++|+||+++||+|+.||+|+|||+.+++..
T Consensus 467 g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (902)
T 2oaj_A 467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNT 546 (902)
T ss_dssp CTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGS
T ss_pred ccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCC
Confidence 2211 111 34567899999999999999999999999999876320
Q ss_pred ---------------------CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 208 ---------------------PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 208 ---------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.....+|.+.|++++||||| +||+|+.|++|++||++++
T Consensus 547 ~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 547 NGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp SCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred ccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 11223599999999999999 9999999999999998764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=221.58 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=164.5
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee-----eeeecCCcceEEEEECc--------CCcEEEEEccCCeEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSP--------SGFYIASGDISGKVR 83 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~-----~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~ 83 (248)
+......++++++++++++ |++|++||..+++.. ..+.+|.+.|.+++|+| |+++||+++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 3344444556677888887 999999999887643 34668999999999998 789999999999999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-EEEEEccCC----------------------------
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG-AKVSSLPID---------------------------- 133 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~-~~i~~~~~~---------------------------- 133 (248)
|||++++... ..+..|..++.+++|+|++. +|++++.++ +++|++...
T Consensus 170 ~Wd~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 170 IWRLTDEGPI--LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEETTEEE--EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEECCCCcee--eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999877644 45567889999999999875 788888887 599997532
Q ss_pred -------CCCceeEeC-CCCCEEEEEcCCCeEEEEEC--Cceeeeec-------------------ccCCCceEEEcC--
Q psy16005 134 -------YEPSSISLD-HEHGLVAVGGADSKISIVEN--GAKVSSLP-------------------IDYEPSSISLDH-- 182 (248)
Q Consensus 134 -------~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~~~-------------------~~~~~~~~~~s~-- 182 (248)
..+.++.|. ++++.+++++.|+.+++||. ++....+. .........++|
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 234456664 89999999999999999992 22221111 111122334444
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 183 EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++.++++|+.||.|++||+.+++...... .|..+|.+++|+|||++||+++.+| +.+|++
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 44477788899999999999988765544 6888999999999999999998665 555554
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=220.59 Aligned_cols=219 Identities=14% Similarity=0.135 Sum_probs=172.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEE-----------------E----------EecCCCceeeeee-cCCcceEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVI-----------------I----------RNIENPAISDIYT-EHSCAVNVAK 65 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~-----------------v----------~~~~~~~~~~~~~-~~~~~v~~~~ 65 (248)
.....|.+++|||||+++|+++ |++|+ + |++.+++....+. .|...|.+++
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va 92 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK 92 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence 4557899999999999999987 88884 1 2222222111222 4578899999
Q ss_pred ECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCC-----CeeEEEEecCCCEEEEEeCCc-EEEEEccCC------
Q psy16005 66 YSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG-----PIKDIAWSPDNQRMISIVENG-AKVSSLPID------ 133 (248)
Q Consensus 66 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------ 133 (248)
|||+|++||+++.||.|++||... .+ ..+. |.. .+.+++|+|||++|+++++|+ +++|++...
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l--~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--ML--TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EE--EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--ee--eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 999999999999999999999544 22 3344 544 599999999999999999888 499997643
Q ss_pred ---------------CCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cce----eeee--cccCCCceEEEcCCCCEEEEEc
Q psy16005 134 ---------------YEPSSISLDHEHGLVAVGGADSKISIVEN-GAK----VSSL--PIDYEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 134 ---------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~--~~~~~~~~~~~s~~~~~l~~~~ 191 (248)
..+.+++|+|++ +++++.|+.+++|+. +.. .+.+ .+...+.+++|+ +..|++++
T Consensus 168 ~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 168 FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC 243 (588)
T ss_dssp CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence 257789999999 788899999999992 222 2344 245679999999 68999887
Q ss_pred CCCcEEEEEcCCCCCCCcccccCCcCeEEEEE--cCCCcEEEEEcCCCeEEEEECC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDHLGPVTDCSF--SPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
++.|++||+.+++.... ..+|.+.|..++| +||++.|++++.||+ ++|..+
T Consensus 244 -~~tIkLWd~~~~~~~~~-~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 244 -PGYVHKIDLKNYSISSL-KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -SSEEEEEETTTTEEEEE-ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred -CCeEEEEECCCCeEEEE-EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 69999999998776333 3379999999999 999999999999999 999874
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=216.26 Aligned_cols=217 Identities=15% Similarity=0.224 Sum_probs=183.1
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...|.++++ +++++++|+ |+.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 45567888877 788999886 999999999999999999999999999999 7889999999999999999998854
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCC-------------CCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDY-------------EPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
..+..|...|.+++|++ ..+++++.++ +++|++.... .+.++.+ +++++++++.|+.|++
T Consensus 207 --~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 207 --NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp --EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred --EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 56778999999999974 5888888776 5999986543 2344555 7889999999999999
Q ss_pred EE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 160 VE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 160 ~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
|| .++.+..+. +...+.++++ ++.++++|+.||.|++||+++++....+. +|...|.+++| ++++|++++.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCC
Confidence 99 555666655 4556777777 47899999999999999999988765554 79999999999 78899999999
Q ss_pred CeEEEEECCC
Q psy16005 237 RKVVLYRVPD 246 (248)
Q Consensus 237 ~~i~vw~~~~ 246 (248)
|.|++||+.+
T Consensus 356 g~i~vwd~~~ 365 (435)
T 1p22_A 356 GKIKVWDLVA 365 (435)
T ss_dssp SCEEEEEHHH
T ss_pred CcEEEEECCC
Confidence 9999999854
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=212.63 Aligned_cols=214 Identities=13% Similarity=0.167 Sum_probs=181.1
Q ss_pred cccCCcEEEEeCCCCC-EEEEeC-CcEEEEEec-CCCceeeeeec--CCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNI-ENPAISDIYTE--HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~-~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|.+++|+|+++ +|++++ |+.|++||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||+++
T Consensus 54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence 5788999999999999 888886 999999999 77655 56778 999999999999 99999999999999999986
Q ss_pred ---------CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC-C------------CCCceeEeCC-CC
Q psy16005 90 ---------KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI-D------------YEPSSISLDH-EH 145 (248)
Q Consensus 90 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~-~------------~~~~~~~~~~-~~ 145 (248)
++.+ ..+. |...+.+++|+|++ +++++.+ .+++|+++. . ..+.+++++| ++
T Consensus 132 ~~~~~~~~~~~~~--~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 132 YGDGVIAVKNLNS--NNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp HTTBCEEEEESCS--SSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred cccccccccCCee--eEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence 5533 3333 78899999999987 7777666 469999876 2 2457889999 99
Q ss_pred CEEEEEcCCCeEEEEE--CC------ceeeeeccc----------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 146 GLVAVGGADSKISIVE--NG------AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~--~~------~~~~~~~~~----------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+++++++.++.+++|+ .. +....+..+ ..+.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence 9999999999999998 32 444455432 27899999999999999999999999999998876
Q ss_pred CcccccC-CcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 208 PKAELDH-LGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 208 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
..+. .| ...|.+++ |++++|++++.||.
T Consensus 287 ~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 287 KNFA-KFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECC-CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhhh-cccCCCceEec--CCCCeEEEEecCCc
Confidence 6554 56 89999999 99999999999998
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=214.84 Aligned_cols=228 Identities=16% Similarity=0.099 Sum_probs=182.4
Q ss_pred cccCCcEEEEeCCCCCEE-EEeC-CcEEEEEecC--CCceeeeee--cCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNF-LYTN-GNSVIIRNIE--NPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l-~~~~-~~~v~v~~~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
.|.+.|.+++|+|++++| ++++ |+.|++||+. +++....+. .|...|.+++|+|++++|++++.+|.|++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 356689999999999996 7775 8999999999 788877776 567899999999999999999999999999998
Q ss_pred CCcee--eeeeccCCCCCeeEEEEecC---CCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEE
Q psy16005 89 NKEHI--LKNEFHPIGGPIKDIAWSPD---NQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 89 ~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~ 151 (248)
+++.. ....+.+|...|.+++|+|+ +++|++++.++ +++|+++. ...+.+++|+ ++++++++
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence 87643 22356778999999999999 99999999776 69999753 2456788999 99999999
Q ss_pred cCCCeEEEEE--CCceeeeecc--------------------------cCCCceEEEcCCCCEEEEEc-CCCcEEEEEc-
Q psy16005 152 GADSKISIVE--NGAKVSSLPI--------------------------DYEPSSISLDHEHGLVAVGG-ADSKVHIYEL- 201 (248)
Q Consensus 152 ~~~~~i~~~~--~~~~~~~~~~--------------------------~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~- 201 (248)
+.|+.|++|| .++.+..+.. ...+..++|+|++++|++++ .++.|++|++
T Consensus 259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~ 338 (450)
T 2vdu_B 259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS 338 (450)
T ss_dssp ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence 9999999999 5555555542 23467899999999999998 8999999999
Q ss_pred -CCC---CCCCcccccCCcCeEEEEEcCCCcEEEEEcC------CCeEEEEECC
Q psy16005 202 -NNK---SLSPKAELDHLGPVTDCSFSPSNEYLVASDA------HRKVVLYRVP 245 (248)
Q Consensus 202 -~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~ 245 (248)
.++ +....+. .| ..|.+++|+|++.++++++. ++.|.+|.+.
T Consensus 339 ~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 339 EKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred cCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 444 2222222 45 78999999996544444332 4568888764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=213.49 Aligned_cols=194 Identities=18% Similarity=0.238 Sum_probs=155.4
Q ss_pred eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEE
Q psy16005 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSS 129 (248)
Q Consensus 53 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~ 129 (248)
.+.+|.+.|++++|+|++++|++|+.|++|++||+.+++......+.+|...|.+++|++ ++++|++++.|+ +++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 356899999999999999999999999999999998876444567889999999999986 489999999776 69999
Q ss_pred ccC------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEECCce--e---eee-cccCCCceEEEcCC------
Q psy16005 130 LPI------------DYEPSSISLDHE--HGLVAVGGADSKISIVENGAK--V---SSL-PIDYEPSSISLDHE------ 183 (248)
Q Consensus 130 ~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~---~~~-~~~~~~~~~~~s~~------ 183 (248)
++. ...+.+++|+|+ +.++++++.|+.|++|+.... . ..+ .+...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 753 235788999998 789999999999999993321 1 112 24556789999997
Q ss_pred -----------CCEEEEEcCCCcEEEEEcCCCCC--CCcccccCCcCeEEEEEcCCC----cEEEEEcCCCeEEEEECCC
Q psy16005 184 -----------HGLVAVGGADSKVHIYELNNKSL--SPKAELDHLGPVTDCSFSPSN----EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 184 -----------~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~vw~~~~ 246 (248)
+++|++|+.|+.|++||++.... ......+|...|.+++|+|++ ++|++++.|++|++|++++
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46899999999999999975521 112234799999999999987 7899999999999999875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=209.63 Aligned_cols=199 Identities=16% Similarity=0.209 Sum_probs=165.3
Q ss_pred CceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCce---eeeeeccCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 48 PAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEH---ILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
.++..++++|.+.|++++|+|+ +++|+||+.||+|++||+.+.+. .....+.+|...|.+++|+|++++|++++.+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 3455678999999999999997 68999999999999999986543 2345678899999999999999999999988
Q ss_pred cE-EEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-eeeee---cccCCCceEEEcCCC--CE
Q psy16005 124 GA-KVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVENGA-KVSSL---PIDYEPSSISLDHEH--GL 186 (248)
Q Consensus 124 ~~-~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~---~~~~~~~~~~~s~~~--~~ 186 (248)
+. ++|+... ........+.++++.+++++.|+.+++||... ..... .+...+..+++++++ .+
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 85 7888653 34456677889999999999999999999433 22222 234567888888765 47
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
+++++.|+.|++||+++++....+. +|.+.|++++|+|++++|++++.|+.|++||++++
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 8899999999999999988765554 79999999999999999999999999999999875
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=210.13 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=170.9
Q ss_pred EeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC---------CCcee
Q psy16005 24 GGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV---------NKEHI 93 (248)
Q Consensus 24 ~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---------~~~~~ 93 (248)
.+.+++..+++|+ |+.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 3456788899987 9999999999998887775 467888889988 9999999999999766 33322
Q ss_pred eeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EEEEEccC-----------CCCCceeEeCCCCCEEEEEcCCCeEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AKVSSLPI-----------DYEPSSISLDHEHGLVAVGGADSKISI 159 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (248)
. .....|...|.+++|+| +++++++++.++ +++|++.. ...+.+++|+|++.++++|+.|+.|++
T Consensus 118 ~-~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 R-EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp E-EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred E-EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 1 22235678899999999 999999999776 69999753 235789999999999999999999999
Q ss_pred EE--CCcee-eeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc--cCCcCeE--EEEEcCCCcEE
Q psy16005 160 VE--NGAKV-SSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL--DHLGPVT--DCSFSPSNEYL 230 (248)
Q Consensus 160 ~~--~~~~~-~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~--~~~~s~~~~~l 230 (248)
|| .++.. ..+. +...+.+++|+|++.+|++++ ++.|++||+++.+....+.. .|...+. +++|+|+|++|
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEE
Confidence 99 44444 4444 467899999999999999999 55999999998876543321 1333343 69999999999
Q ss_pred EEEcC-CCeEEEEECCCC
Q psy16005 231 VASDA-HRKVVLYRVPDF 247 (248)
Q Consensus 231 ~~~~~-d~~i~vw~~~~~ 247 (248)
++++. |+.+++|++.+.
T Consensus 276 ~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEETTTTEEEEEEECTT
T ss_pred EEecCCCCcEEEEEEccc
Confidence 99988 999999998543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=204.69 Aligned_cols=208 Identities=10% Similarity=0.066 Sum_probs=146.9
Q ss_pred ccCCcEEEEeCCC----CCEEEEeC---------------------CcEEEEEec-CCCceeeeeecCCcceEEEEECc-
Q psy16005 16 QRGQPIVLGGDPK----GKNFLYTN---------------------GNSVIIRNI-ENPAISDIYTEHSCAVNVAKYSP- 68 (248)
Q Consensus 16 ~~~~v~~~~~s~~----~~~l~~~~---------------------~~~v~v~~~-~~~~~~~~~~~~~~~v~~~~~s~- 68 (248)
+.+.|.+++++|| ++.++.++ |+.|++|++ .+++....+..|...+..++|+|
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 4557888888888 76666522 678888888 44777777778888888888888
Q ss_pred --CCcEEEEEccCCeEEEEECCCCceeeeeeccCC---CCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCC
Q psy16005 69 --SGFYIASGDISGKVRIWDTVNKEHILKNEFHPI---GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDH 143 (248)
Q Consensus 69 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 143 (248)
++.+|++++.|++|+|||+++++.+ ..+.+| ...+.+++|+|+|+++++++.+.. +|
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l--~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w--------------- 251 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLL--KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KE--------------- 251 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEE--EEEECCC---CCCEEEEEEETTEEEEEEC----------------------
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEE--EEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cc---------------
Confidence 6789999999999999999999865 344443 346778899999999988764321 12
Q ss_pred CCCEEEEEcCCCeEEEEE--CCceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 144 EHGLVAVGGADSKISIVE--NGAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~--~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
.+++|+.|+++++|| .++.+..+.. ......+..+.++.++++++.|++|+|||+.+++....+. +|...
T Consensus 252 ---~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~ 327 (356)
T 2w18_A 252 ---SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQ 327 (356)
T ss_dssp ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--C
T ss_pred ---eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCC
Confidence 467899999999999 4555443321 1111233334447789999999999999999999876655 67665
Q ss_pred e-EEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 218 V-TDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 218 v-~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+ ..++|+|||++|++|+.|++|+|||+.
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 4 468999999999999999999999963
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=214.92 Aligned_cols=221 Identities=15% Similarity=0.248 Sum_probs=181.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|.+.|.+++| ++++|++|+ ||.|++||+.+++....+..|...|.+++|++ ..+++|+.||.|++||+.+++..
T Consensus 171 ~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~ 246 (435)
T 1p22_A 171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI 246 (435)
T ss_dssp CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC
T ss_pred CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc
Confidence 58889999999 788999887 99999999999999999999999999999974 58999999999999999887643
Q ss_pred -eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 94 -LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 94 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
....+.+|...|.+++| +++++++++.++ +++|++... ..+.++.+ +++++++++.|+.|++||
T Consensus 247 ~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd 322 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 322 (435)
T ss_dssp EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 22456789999999999 788999999877 599998643 33445555 578999999999999999
Q ss_pred --CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--------CCcccccCCcCeEEEEEcCCCcEE
Q psy16005 162 --NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--------SPKAELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 162 --~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l 230 (248)
.++.+..+. +...+.++++ ++.+|++|+.||.|++||+.+++. ......+|.+.|.+++| ++++|
T Consensus 323 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 323 IECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQI 398 (435)
T ss_dssp TTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred CCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEE
Confidence 566666665 4556788888 788999999999999999976551 11223378999999999 78899
Q ss_pred EEEcCCCeEEEEECCCC
Q psy16005 231 VASDAHRKVVLYRVPDF 247 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~ 247 (248)
++++.||.|++||+.+.
T Consensus 399 ~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 399 VSSSHDDTILIWDFLND 415 (435)
T ss_dssp EECCSSSEEEEEC----
T ss_pred EEEeCCCEEEEEECCCC
Confidence 99999999999998764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=209.09 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=166.7
Q ss_pred CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-
Q psy16005 48 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG- 124 (248)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~- 124 (248)
|++...+.+|...|.+++|+|++++|++|+.||.|++||+..+.......+.+|...|.+++|+++ +++|++++.++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 345677889999999999999999999999999999999985544455677889999999999977 89999999876
Q ss_pred EEEEEccC------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEECCc-----eeeeecccCCCceEEEcC---
Q psy16005 125 AKVSSLPI------------DYEPSSISLDHE--HGLVAVGGADSKISIVENGA-----KVSSLPIDYEPSSISLDH--- 182 (248)
Q Consensus 125 ~~i~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~s~--- 182 (248)
+++|++.. ...+.+++|+|+ +.++++++.|+.|++||... ......+...+.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 69999753 345788999999 99999999999999999322 122224566789999999
Q ss_pred ----------CCCEEEEEcCCCcEEEEEcCCCCCCC---cccccCCcCeEEEEEcCC---CcEEEEEcCCCeEEEEECCC
Q psy16005 183 ----------EHGLVAVGGADSKVHIYELNNKSLSP---KAELDHLGPVTDCSFSPS---NEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 183 ----------~~~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~vw~~~~ 246 (248)
++.+|++++.|+.|++||++++.... ....+|...|.+++|+|+ +++|++++.||.|++||+++
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 69999999999999999998776431 223368999999999999 89999999999999999987
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 241 ~ 241 (379)
T 3jrp_A 241 E 241 (379)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=202.97 Aligned_cols=225 Identities=15% Similarity=0.184 Sum_probs=181.3
Q ss_pred CCcEEEEeCCCCCEEE-EeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFL-YTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~-~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+.+++|+|+|++++ +++ ++.|++||+.+++....+..+. .+.+++|+|++++|+ +++.++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 4589999999999874 453 8999999999999888886554 899999999999775 55577999999999887543
Q ss_pred eeeccCCCCCeeEEEEecCCCEEE-EEeCCc-EEEEEccC---------CCCCceeEeCCCCCEE-EEEcCCCeEEEEE-
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMI-SIVENG-AKVSSLPI---------DYEPSSISLDHEHGLV-AVGGADSKISIVE- 161 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~- 161 (248)
.+. +...+.+++|+|+++.++ +++.++ +.+|++.. +..+..++++|+++.+ ++++.++.|++||
T Consensus 111 --~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 111 --TVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp --EEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred --EEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 333 345789999999999884 555444 68898753 4556788999999877 5778899999999
Q ss_pred -CCceeeeecccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEE-EEEcCC
Q psy16005 162 -NGAKVSSLPIDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL-VASDAH 236 (248)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d 236 (248)
.++....+.....+.+++|+|+++++++++ .++.|++||+++++...... .| ..+.+++|+|++++| ++++.|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~s~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDGKKVYVALSFX 265 (391)
T ss_dssp TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEEEEEETTT
T ss_pred CCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCCCEEEEEcCCC
Confidence 455666666777789999999999999887 68999999999887654443 23 458999999999987 566889
Q ss_pred CeEEEEECCCCC
Q psy16005 237 RKVVLYRVPDFE 248 (248)
Q Consensus 237 ~~i~vw~~~~~~ 248 (248)
+.|++||+.+++
T Consensus 266 ~~v~v~d~~~~~ 277 (391)
T 1l0q_A 266 NTVSVIDTATNT 277 (391)
T ss_dssp TEEEEEETTTTE
T ss_pred CEEEEEECCCCc
Confidence 999999998763
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=208.10 Aligned_cols=227 Identities=18% Similarity=0.154 Sum_probs=188.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCce
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~ 92 (248)
.|.+.+.+++|+|+++++++++ ++.|++||+.+++....+..|...+.+++|+|+++.++ +++.++.|++||+++++.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 5677899999999999999987 89999999999999888888999999999999998875 555899999999998875
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeC--------C-cEEEEEccC---------CCCCceeEeCCCCCE-EEEEcC
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVE--------N-GAKVSSLPI---------DYEPSSISLDHEHGL-VAVGGA 153 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~-~~~i~~~~~---------~~~~~~~~~~~~~~~-~~~~~~ 153 (248)
. ..+.. ...+.+++|+|+++.+++++. + .+.+|++.. ...+..++++|+++. +++++.
T Consensus 247 ~--~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 247 I--RKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp E--EECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred E--EEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecC
Confidence 4 33333 456899999999999988872 3 468998753 345678899999975 566789
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcC---------------CCcEEEEEcCCCCCCCcccccCCc
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGA---------------DSKVHIYELNNKSLSPKAELDHLG 216 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------d~~v~i~d~~~~~~~~~~~~~~~~ 216 (248)
++.+++|| .++....+.....+.+++|+|+++++++++. ||.|++||+.+++...... +..
T Consensus 324 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~ 401 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGN 401 (433)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSS
T ss_pred CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--CCC
Confidence 99999999 5666777777778899999999998888876 5799999999988755443 356
Q ss_pred CeEEEEEcCCCcEEEEEcC-CCeEEEEECCC
Q psy16005 217 PVTDCSFSPSNEYLVASDA-HRKVVLYRVPD 246 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~-d~~i~vw~~~~ 246 (248)
.+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 7999999999999988765 99999999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=210.88 Aligned_cols=212 Identities=20% Similarity=0.261 Sum_probs=174.8
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeec-----------cCCCCC
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEF-----------HPIGGP 104 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 104 (248)
++.+++|+++.++....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.+++....... .+|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45677888888888888889999999999999 999999999999999999998765432221 258999
Q ss_pred eeEEEEec-CCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCC---CCEEEEEcCCCeEEEEE--CCceeee
Q psy16005 105 IKDIAWSP-DNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHE---HGLVAVGGADSKISIVE--NGAKVSS 168 (248)
Q Consensus 105 v~~~~~~~-~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~--~~~~~~~ 168 (248)
|.+++|+| ++++|++++.++ +++|++.. ...+..+.+.+. +.++++++.++.|++|| .++.+..
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 99999999 778999999776 69999764 345567777774 45999999999999999 4555555
Q ss_pred ec-ccCCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCCCCCcc---------------cccCCcCeEEEEEcCCCcEEE
Q psy16005 169 LP-IDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKA---------------ELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 169 ~~-~~~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~---------------~~~~~~~v~~~~~s~~~~~l~ 231 (248)
+. +...+.+++|+|+++ ++++++.||.|++||++++...... ...|...|.+++|+|++++|+
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 55 566789999999998 5899999999999999876522111 136889999999999999999
Q ss_pred EEcCCCeEEEEECCCCC
Q psy16005 232 ASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~~ 248 (248)
+++.||.|++||+.+++
T Consensus 262 ~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp EEETTSCEEEEETTTCC
T ss_pred EecCCCeEEEEECCCCc
Confidence 99999999999998763
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=205.95 Aligned_cols=225 Identities=17% Similarity=0.235 Sum_probs=183.9
Q ss_pred cccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 9 FATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 9 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
+..+. .|.+.|.+++|+ ++.+++++ |+.|++||+.+++....+.+|...|.++.|+ ++.+++|+.||.|++||+
T Consensus 152 ~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 152 LRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp EEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred EEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence 33443 588899999997 56788776 9999999999999999999999999999995 568999999999999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
.+++.+ ..+.+|...+.+++| +++++++++.++ +++|++.. ...+.++.+ ++..+++++.|+.
T Consensus 227 ~~~~~~--~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~ 300 (445)
T 2ovr_B 227 ETGQCL--HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS 300 (445)
T ss_dssp SSCCEE--EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC
T ss_pred CCCcEE--EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe
Confidence 988754 566788999999999 788899998776 69999753 234556666 7889999999999
Q ss_pred EEEEE--CCceeeeecc-cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc--cCCcCeEEEEEcCCCcEEE
Q psy16005 157 ISIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 157 i~~~~--~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 231 (248)
|++|| .++.+..+.. ...+.++. ++++++++|+.||.|++||+++++....+.. .|...|.+++|+ +++|+
T Consensus 301 i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 376 (445)
T 2ovr_B 301 IRVWDVETGNCIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVI 376 (445)
T ss_dssp EEEEETTTCCEEEEECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEE
T ss_pred EEEEECCCCCEEEEEcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEE
Confidence 99999 5556665543 33344454 4677999999999999999999887655442 388899999995 58999
Q ss_pred EEcCCCeEEEEECCCCC
Q psy16005 232 ASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~~ 248 (248)
+++.||.|++||+.+++
T Consensus 377 s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 377 TSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEETTSEEEEEETTTCC
T ss_pred EEeCCCeEEEEECCCCc
Confidence 99999999999998874
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-31 Score=207.49 Aligned_cols=222 Identities=14% Similarity=0.204 Sum_probs=186.2
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
.|...|.+++|+ ++.+++++ |+.|++||+.+++....+.+|...|.+++| +++++++++.||.|++||+++++.+
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL 272 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe
Confidence 578899999995 56677776 999999999999999999999999999999 6789999999999999999988754
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCCC--------ceeEeCCCCCEEEEEcCCCeEEEEE--C
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYEP--------SSISLDHEHGLVAVGGADSKISIVE--N 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~--~ 162 (248)
..+.+|...+.+++| +++++++++.++ +++|++.....+ ....+.++++++++++.|+.|++|| .
T Consensus 273 --~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 273 --HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp --EEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred --EEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 566788999999999 788999998776 699998654322 1223445678999999999999999 5
Q ss_pred Cceeeeec----ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc----ccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 163 GAKVSSLP----IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE----LDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 163 ~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
++.+..+. +...+.+++++ +++|++|+.||.|++||+.+++....+. .+|.+.|.+++|+|++.++++++
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence 66666665 45567888886 5799999999999999999998765542 25788999999999999999999
Q ss_pred CCCe----EEEEECCC
Q psy16005 235 AHRK----VVLYRVPD 246 (248)
Q Consensus 235 ~d~~----i~vw~~~~ 246 (248)
.||. +.+||++.
T Consensus 427 ~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 427 RNGTEETKLLVLDFDV 442 (445)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred cCCCCccEEEEEECCC
Confidence 9997 99999964
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-31 Score=207.21 Aligned_cols=227 Identities=12% Similarity=0.072 Sum_probs=186.3
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee-----eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD-----IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+.+++|+|++.++++++ ++.|++||+.+++... .+.+|...|.+++|+|+++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 4566899999777777766 7899999999988776 445788899999999999999999999999999999887
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEe-CC-cEEEEEccC---------CCCCceeEeCCCCCEEEEEc--------
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIV-EN-GAKVSSLPI---------DYEPSSISLDHEHGLVAVGG-------- 152 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~-~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~-------- 152 (248)
.. ..+..|...+.+++|+|+++.+++++ .+ .+.+|++.. ...+..++++|+++.+++++
T Consensus 203 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 280 (433)
T 3bws_A 203 YK--ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQES 280 (433)
T ss_dssp EE--EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCS
T ss_pred EE--EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcccc
Confidence 54 45557788999999999999886665 44 468898753 34467889999999998887
Q ss_pred CCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE
Q psy16005 153 ADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLV-AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY 229 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 229 (248)
.|+.|++|| .++....+.+...+.+++|+|+++.+ ++++.++.|++||+.+++..... .+...+.+++|+|++++
T Consensus 281 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~ 358 (433)
T 3bws_A 281 GGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI--PVFDKPNTIALSPDGKY 358 (433)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSE
T ss_pred CCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe--cCCCCCCeEEEcCCCCE
Confidence 588999999 45666666666788899999999755 56688999999999988765444 46778999999999999
Q ss_pred EEEEcC---------------CCeEEEEECCCCC
Q psy16005 230 LVASDA---------------HRKVVLYRVPDFE 248 (248)
Q Consensus 230 l~~~~~---------------d~~i~vw~~~~~~ 248 (248)
|++++. ||.|++||+.+++
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 888865 5799999998763
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=205.85 Aligned_cols=211 Identities=9% Similarity=0.092 Sum_probs=163.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCc-----ceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSC-----AVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
.+...|.+++|||+|+.||+++ ||.|++||.++ ....+. |.. .+.+++|||||++||+|+.||+|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 4478899999999999999987 99999999544 555555 655 49999999999999999999999999999
Q ss_pred CCce-----eeeeec----cCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--------------CCCceeEeCCCC
Q psy16005 89 NKEH-----ILKNEF----HPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID--------------YEPSSISLDHEH 145 (248)
Q Consensus 89 ~~~~-----~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------~~~~~~~~~~~~ 145 (248)
++.. .....+ .+|...|.+++|+||| .++++.++.+++|++... ..+.+++|+ +
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g 236 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D 236 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence 8752 112333 6788999999999999 555555666899997432 236677888 5
Q ss_pred CEEEEEcCCCeEEEEE-CCcee--eeecccCCCceEEE--cCCCCEEEEEcCCCcEEEEEcCC-----C-----------
Q psy16005 146 GLVAVGGADSKISIVE-NGAKV--SSLPIDYEPSSISL--DHEHGLVAVGGADSKVHIYELNN-----K----------- 204 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~-~~~~~--~~~~~~~~~~~~~~--s~~~~~l~~~~~d~~v~i~d~~~-----~----------- 204 (248)
+.+++++ ++.|++|| .+... ....+...+..+++ +|++..+++++++|. ++|..+. .
T Consensus 237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v 314 (588)
T 2j04_A 237 YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKF 314 (588)
T ss_dssp TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHH
T ss_pred CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEE
Confidence 8888887 69999999 33333 23356677899999 999999999999999 9998632 1
Q ss_pred -------CCCCcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 205 -------SLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 205 -------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.... ...+...|.+++|||||+.+|+++.
T Consensus 315 ~lW~~~g~~l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 315 KKWSTIWNEFN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHTTTTTTSSS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEECCCCcee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 1111 1123456999999999999998863
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=201.07 Aligned_cols=205 Identities=16% Similarity=0.278 Sum_probs=162.5
Q ss_pred EecCCCceeeeeecCCcceEEEEECcC---CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEE
Q psy16005 43 RNIENPAISDIYTEHSCAVNVAKYSPS---GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119 (248)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 119 (248)
++....+....+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+........+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 445566677788899999999999998 69999999999999999998443344567789999999999999999999
Q ss_pred EeCCc-EEEEEcc---------CCCCCceeEe--CCCCCEEEEEcCCCeEEEEE--CCceeeeecccC------------
Q psy16005 120 IVENG-AKVSSLP---------IDYEPSSISL--DHEHGLVAVGGADSKISIVE--NGAKVSSLPIDY------------ 173 (248)
Q Consensus 120 ~~~~~-~~i~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~------------ 173 (248)
++.++ +++|++. ....+.++.| +++++++++++.|+.|++|| .++.+..+..+.
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEE
T ss_pred EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCee
Confidence 99887 5999975 3456788999 89999999999999999999 344443333221
Q ss_pred ------------------------------CCceEEEcCCCCE----EEEEcCCCcEEEEEcCCCCC---CCcccccCCc
Q psy16005 174 ------------------------------EPSSISLDHEHGL----VAVGGADSKVHIYELNNKSL---SPKAELDHLG 216 (248)
Q Consensus 174 ------------------------------~~~~~~~s~~~~~----l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~ 216 (248)
...++++.++... +++++.|+.|++||++.... ...+. .|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~ 262 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-CHRS 262 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-CSEE
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee-eeec
Confidence 2234444443333 99999999999999988742 22222 4544
Q ss_pred ------------CeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 217 ------------PVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 217 ------------~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.|++++|+|++++|++++.||.|++||+++++
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 79999999999999999999999999998763
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-30 Score=201.94 Aligned_cols=229 Identities=18% Similarity=0.269 Sum_probs=179.8
Q ss_pred CCcEEEEeCCCC----------CEEEEeC-----CcEEEEEecC--------------------------CCce-eeeee
Q psy16005 18 GQPIVLGGDPKG----------KNFLYTN-----GNSVIIRNIE--------------------------NPAI-SDIYT 55 (248)
Q Consensus 18 ~~v~~~~~s~~~----------~~l~~~~-----~~~v~v~~~~--------------------------~~~~-~~~~~ 55 (248)
-+..++.|.|+. .++++|. .+.|.++++. +++. .....
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 356788888875 3566663 3577777543 1111 23345
Q ss_pred cCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCC--------ceeeeeeccCCCCCeeEEEEecCCC-EEEEEeCCc-
Q psy16005 56 EHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNK--------EHILKNEFHPIGGPIKDIAWSPDNQ-RMISIVENG- 124 (248)
Q Consensus 56 ~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~- 124 (248)
.|.+.|++++|+|+ +++|++++.+|.|++||+... .......+.+|...+.+++|+|+++ +|++++.++
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 79999999999997 789999999999999999761 1223456778999999999999988 899888776
Q ss_pred EEEEEccC-----------------CCCCceeEeCC-CCCEEEEEcCCCeEEEEECC-----ceeeee-cccCCCceEEE
Q psy16005 125 AKVSSLPI-----------------DYEPSSISLDH-EHGLVAVGGADSKISIVENG-----AKVSSL-PIDYEPSSISL 180 (248)
Q Consensus 125 ~~i~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~-----~~~~~~-~~~~~~~~~~~ 180 (248)
+.+|++.. ...+.+++|+| ++.++++++.|+.|++||.. +....+ .+...+++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 69999864 22367889999 67899999999999999933 344444 45677899999
Q ss_pred cCCCC-EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEcCCCeEEEEECCC
Q psy16005 181 DHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 181 s~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~ 246 (248)
+|++. ++++|+.||.|++||+++..........|...|.+++|+|+++ +|++++.|+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 99987 7889999999999999985543344447999999999999996 688999999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-29 Score=194.61 Aligned_cols=211 Identities=13% Similarity=0.183 Sum_probs=172.8
Q ss_pred EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccCCCCCeeEE
Q psy16005 31 NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDI 108 (248)
Q Consensus 31 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 108 (248)
.+++++ ++.|++||+.+++....+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++... .+..+ ..+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~--~~~~~-~~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA--TVPAG-SSPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--EEECS-SSEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE--EEECC-CCccce
Confidence 455555 8999999999999988887665 58999999999876 677799999999999888653 33333 489999
Q ss_pred EEecCCCEEEEEe-C-CcEEEEEccC---------CCCCceeEeCCCCCEE-EEEcCCCeEEEEE--CCceeeeecccCC
Q psy16005 109 AWSPDNQRMISIV-E-NGAKVSSLPI---------DYEPSSISLDHEHGLV-AVGGADSKISIVE--NGAKVSSLPIDYE 174 (248)
Q Consensus 109 ~~~~~~~~l~~~~-~-~~~~i~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~~~~~ 174 (248)
+|+|+++++++++ . +.+.+|++.. +..+..++|+|+++.+ ++++.++.|++|| .++.+..+.....
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 159 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS 159 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC
Confidence 9999999887666 3 3468888753 3456789999999977 6888899999999 5666777777777
Q ss_pred CceEEEcCCCCEE-EEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc---CCCeEEEEECCCC
Q psy16005 175 PSSISLDHEHGLV-AVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD---AHRKVVLYRVPDF 247 (248)
Q Consensus 175 ~~~~~~s~~~~~l-~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~~~~~ 247 (248)
+.+++|+|+++++ ++++.++.|++||+++++..... .+...+.+++|+|++++|++++ .++.|++||++++
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE--ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 8999999999977 56778899999999988765443 3566889999999999998887 6899999999875
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=193.35 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=161.1
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce--eeeeeccCCCCCeeEEEEec--CCCEEEEEeCCc-EE
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIKDIAWSP--DNQRMISIVENG-AK 126 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~-~~ 126 (248)
..+.+|.+.|++++|+|++++|++++.||.|++||+.++.. .....+.+|...|.+++|+| ++++|++++.++ ++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 45679999999999999999999999999999999987642 23355678999999999999 699999999877 69
Q ss_pred EEEccC-------------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEEC--Cceeeee--------------
Q psy16005 127 VSSLPI-------------------DYEPSSISLDHE--HGLVAVGGADSKISIVEN--GAKVSSL-------------- 169 (248)
Q Consensus 127 i~~~~~-------------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~--~~~~~~~-------------- 169 (248)
+|++.. ...+.+++|+|+ +.++++++.|+.|++||. ++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999854 234678899999 999999999999999993 3222211
Q ss_pred cccCCCceEEEcCC---CCEEEEEcCCCcEEEEEcCCCCCC-CcccccCCcCeEEEEEcCCC----cEEEEEcCCCeEEE
Q psy16005 170 PIDYEPSSISLDHE---HGLVAVGGADSKVHIYELNNKSLS-PKAELDHLGPVTDCSFSPSN----EYLVASDAHRKVVL 241 (248)
Q Consensus 170 ~~~~~~~~~~~s~~---~~~l~~~~~d~~v~i~d~~~~~~~-~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~v 241 (248)
.+...+.+++|+|+ +..+++++.++.+.+|+...++.. .....+|...|++++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 23456789999997 889999999999988887776642 12233689999999999998 89999999999999
Q ss_pred EECCCC
Q psy16005 242 YRVPDF 247 (248)
Q Consensus 242 w~~~~~ 247 (248)
||++++
T Consensus 245 wd~~~~ 250 (351)
T 3f3f_A 245 FKITEK 250 (351)
T ss_dssp EEEEEC
T ss_pred EeCCCC
Confidence 998753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=215.06 Aligned_cols=196 Identities=20% Similarity=0.262 Sum_probs=163.3
Q ss_pred eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC--CCEEEEEeCCc-EEEE
Q psy16005 52 DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD--NQRMISIVENG-AKVS 128 (248)
Q Consensus 52 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~-~~i~ 128 (248)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++.......+.+|...|.+++|+|+ +++|++++.++ +++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 45679999999999999999999999999999999986554455678899999999999988 99999999887 6999
Q ss_pred EccC------------CCCCceeEeCCC--CCEEEEEcCCCeEEEEECCc-----eeeeecccCCCceEEEcC-------
Q psy16005 129 SLPI------------DYEPSSISLDHE--HGLVAVGGADSKISIVENGA-----KVSSLPIDYEPSSISLDH------- 182 (248)
Q Consensus 129 ~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~s~------- 182 (248)
++.. ...+.+++|+|+ ++.+++++.|+.|++||... ......+...+.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 9754 346788999999 99999999999999999322 222234567789999999
Q ss_pred ------CCCEEEEEcCCCcEEEEEcCCCCCC---CcccccCCcCeEEEEEcCC---CcEEEEEcCCCeEEEEECCCC
Q psy16005 183 ------EHGLVAVGGADSKVHIYELNNKSLS---PKAELDHLGPVTDCSFSPS---NEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 183 ------~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~vw~~~~~ 247 (248)
++.++++|+.||.|++||++++... .....+|...|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5899999999999999999887532 1223368999999999999 899999999999999999875
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=192.54 Aligned_cols=216 Identities=8% Similarity=0.061 Sum_probs=162.4
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecC---------CCceeeeee-cCCcceEEEEECc--CCcEEEEEccCCeEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIE---------NPAISDIYT-EHSCAVNVAKYSP--SGFYIASGDISGKVRI 84 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~---------~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i 84 (248)
+.|.++.|+|+ +++++ |+.+++|+.. +++....+. .|.++|.+++|+| +++++++++.||+|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45667778888 66665 9999999665 444344443 6778999999999 9999999999999999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCCCEEEEE
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~~~~~~~ 151 (248)
||+++++... .....+...+.+++|+|++++|++++.++ +++|+++. ...+.+++|+|++.+++++
T Consensus 154 wd~~~~~~~~-~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~ 232 (343)
T 3lrv_A 154 QSYEDDSQYI-VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE 232 (343)
T ss_dssp EESSSSCEEE-EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEE
T ss_pred EECCCCcEEE-EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEE
Confidence 9999888632 22234566899999999999999988776 59999742 3456789999999999999
Q ss_pred cCCCeEEEEECC--ceeeeecc----cCCC--ceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCcccccCCcCeEEEE
Q psy16005 152 GADSKISIVENG--AKVSSLPI----DYEP--SSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAELDHLGPVTDCS 222 (248)
Q Consensus 152 ~~~~~i~~~~~~--~~~~~~~~----~~~~--~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~ 222 (248)
+. +.|++||.. +....+.. ...+ .+++|+|++++|++++. |+.+++|++.+....... .++..++
T Consensus 233 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~ 306 (343)
T 3lrv_A 233 CD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALC 306 (343)
T ss_dssp ES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECC
T ss_pred eC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEe
Confidence 94 599999943 33222221 1223 36999999999999988 999999999766542211 5677888
Q ss_pred EcC---CCcEEEEEcCCCeEEEEE
Q psy16005 223 FSP---SNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 223 ~s~---~~~~l~~~~~d~~i~vw~ 243 (248)
|+| +.+.+++++.|+.+.++-
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEE
T ss_pred cCccccccceeEEEecCCceEEEE
Confidence 888 888899888888888764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-28 Score=186.14 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=168.0
Q ss_pred CcEEEEeCCCCCEEEE-eC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC-ceeee
Q psy16005 19 QPIVLGGDPKGKNFLY-TN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK-EHILK 95 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~-~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~ 95 (248)
.+..+++.++++.++. ++ ++.|++||..+++.+..+. +...|.+++|+++. ++++ .++.|++||+.++ +.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~-- 133 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRI-- 133 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBS--
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceee--
Confidence 4778889999888865 43 7899999999999888885 67799999999864 3333 4789999999987 433
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEE--eCC-cEEEEEccC--------------------------CCCCceeEeCCCCC
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISI--VEN-GAKVSSLPI--------------------------DYEPSSISLDHEHG 146 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~--~~~-~~~i~~~~~--------------------------~~~~~~~~~~~~~~ 146 (248)
..+.. +...+++++ .+++++ +.+ .+++|++.. ...+.+++|+|+++
T Consensus 134 ~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 134 TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD 208 (355)
T ss_dssp SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence 22222 344566776 666664 444 469999864 23467899999999
Q ss_pred EEEEEcCCCe-EEEEE--CCceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc---------
Q psy16005 147 LVAVGGADSK-ISIVE--NGAKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE--------- 211 (248)
Q Consensus 147 ~~~~~~~~~~-i~~~~--~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------- 211 (248)
++++++.|++ |++|| .++.+..+. +...+.+++|+|++++|++++.|+.|++||++.........
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 9999999998 99999 567777776 67789999999999999999999999999998654221110
Q ss_pred -------------ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 212 -------------LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 -------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.........++|+|++++|++++.||.+++|++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 01122347799999999999999999999999754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-27 Score=182.88 Aligned_cols=212 Identities=10% Similarity=0.105 Sum_probs=161.8
Q ss_pred CCEEEEeC-C------cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC---eEEEEECCCCceeeeeec
Q psy16005 29 GKNFLYTN-G------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG---KVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 29 ~~~l~~~~-~------~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~ 98 (248)
+..+++++ + +.|++||++. ...+.+..|...+.+++|+|+|+.|++++.++ .|++||+.+++.. .+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---EE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---Ee
Confidence 55555543 2 7999999874 45666778999999999999999999998875 9999999988753 45
Q ss_pred cCCCCCeeEEEEecCCCEEEE-EeCCc---EEEEEccC---------CCCCceeEeCCCCCEEEEEcC-CC--eEEEEEC
Q psy16005 99 HPIGGPIKDIAWSPDNQRMIS-IVENG---AKVSSLPI---------DYEPSSISLDHEHGLVAVGGA-DS--KISIVEN 162 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~-~~~~~---~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~--~i~~~~~ 162 (248)
..|...+.+++|+|||+.|+. ++.++ +.+|++.. ...+..++|+|+++.+++++. ++ .|++||.
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 567788999999999998884 44433 57777643 234567899999998888775 44 6777782
Q ss_pred -Cceeeeec-ccCCCceEEEcCCCCEEEEEcCC---CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 163 -GAKVSSLP-IDYEPSSISLDHEHGLVAVGGAD---SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 163 -~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d---~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
+.....+. ....+.+++|+|+|++|++++.+ ..|++||+.+++.. .+. .+. .+.+++|+|||++|++++.++
T Consensus 299 ~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 299 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-STF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CSS-SCEEEEECTTSSEEEEEEEET
T ss_pred CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec-CCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 22233332 34456789999999999988764 58999999988763 222 343 899999999999999888776
Q ss_pred ---eEEEEECCCC
Q psy16005 238 ---KVVLYRVPDF 247 (248)
Q Consensus 238 ---~i~vw~~~~~ 247 (248)
.|++||+..+
T Consensus 376 ~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 376 MGSVLNLVSTDGR 388 (415)
T ss_dssp TEEEEEEEETTSC
T ss_pred CccEEEEEECCCC
Confidence 8999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=175.17 Aligned_cols=191 Identities=17% Similarity=0.206 Sum_probs=152.9
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee----------------------------------------
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI---------------------------------------- 53 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~---------------------------------------- 53 (248)
.|...|.+++|+|++++|++|+ |+.|++|++.+++.+..
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~ 144 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 144 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE
Confidence 5778899999999999999987 99999999987764433
Q ss_pred -eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEE-E--eCCc-EE
Q psy16005 54 -YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMIS-I--VENG-AK 126 (248)
Q Consensus 54 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~-~--~~~~-~~ 126 (248)
+.+|...+..+.+++++++|++++.||.|++||+++++.. .......+...|.+++++|++..++. + +.++ ++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 2356677888899999999999999999999999876532 22344567789999999997765442 2 3333 68
Q ss_pred EEEccC---------CCCCceeEeCCCCCEEEEE--cCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcC
Q psy16005 127 VSSLPI---------DYEPSSISLDHEHGLVAVG--GADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 127 i~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~ 192 (248)
+|+... ...+..+.+.+++..++++ +.|+.|++|| .++.+..+. |...+.+++|+|++++|++|+.
T Consensus 225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 998753 3456778889998877765 4799999999 667777776 5677899999999999999999
Q ss_pred CCcEEEEEcCCCC
Q psy16005 193 DSKVHIYELNNKS 205 (248)
Q Consensus 193 d~~v~i~d~~~~~ 205 (248)
||+|+|||+....
T Consensus 305 D~~v~iWd~~~~d 317 (318)
T 4ggc_A 305 DETLRLWRCFELD 317 (318)
T ss_dssp TTEEEEECCSCCC
T ss_pred CCeEEEEECCCCC
Confidence 9999999987543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=175.09 Aligned_cols=227 Identities=13% Similarity=0.124 Sum_probs=169.3
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCce-eeeeecCCcceEEEEECcCCcEEEEEccCC---eEEEEECCCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGFYIASGDISG---KVRIWDTVNK 90 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~ 90 (248)
...+ +++|+|+|+++++++ ++.|++||+.+++. ...+..+..+..+++|+|++++++++..++ .|.+||+.++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 3445 899999999776654 78999999999887 667766666666699999999999655553 8999999988
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEe-C-Cc-EEEEEccC--------------CCCCceeEeCCCCCEE-EEEc
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIV-E-NG-AKVSSLPI--------------DYEPSSISLDHEHGLV-AVGG 152 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~-~~i~~~~~--------------~~~~~~~~~~~~~~~~-~~~~ 152 (248)
+.+. .+. ....+.+++|+|+|++++++. . +. +.+|++.. ...+..++++|+++.+ +++.
T Consensus 119 ~~~~--~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 195 (331)
T 3u4y_A 119 KFIS--TIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL 195 (331)
T ss_dssp EEEE--EEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred CeEE--EEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC
Confidence 7543 333 235578999999998776664 3 55 78887642 2446788999999955 4555
Q ss_pred CCCeEEEEE--CCce---eeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCC--Cccc------ccCCcCe
Q psy16005 153 ADSKISIVE--NGAK---VSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLS--PKAE------LDHLGPV 218 (248)
Q Consensus 153 ~~~~i~~~~--~~~~---~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~--~~~~------~~~~~~v 218 (248)
.++.|.+|| .++. +..++....+..++|+|||+++++++ .++.|.+||+.+++.. .... .......
T Consensus 196 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 196 IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 789999999 4565 66777777889999999999777665 4778999999987761 1111 0111223
Q ss_pred EEEEEcCCCcEEEEEc-CCCeEEEEECCCC
Q psy16005 219 TDCSFSPSNEYLVASD-AHRKVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~ 247 (248)
..++|+|||++|++++ .++.|.+||+.+.
T Consensus 276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 276 NQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 5689999999886654 5679999999764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-26 Score=179.47 Aligned_cols=208 Identities=13% Similarity=0.190 Sum_probs=161.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC-C---cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCC--eEEEEEC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN-G---NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISG--KVRIWDT 87 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~-~---~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg--~i~iwd~ 87 (248)
.|.+.+.+++|+|||+.|++++ + ..|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++ .|++||+
T Consensus 176 ~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~ 254 (415)
T 2hqs_A 176 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254 (415)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence 3677899999999999999886 4 39999999988775 4667888999999999999887 666655 4999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-c---EEEEEccCC---------CCCceeEeCCCCCEEEEEcCC
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-G---AKVSSLPID---------YEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~---~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.+++. ..+..|...+.+++|+|||++|++++.+ + +.+|++... ..+..++|+|+++++++++.+
T Consensus 255 ~~~~~---~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~ 331 (415)
T 2hqs_A 255 ASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN 331 (415)
T ss_dssp TTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred CCCCE---EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECc
Confidence 88764 3556678899999999999999988853 3 455565422 234568999999999887764
Q ss_pred ---CeEEEEEC-CceeeeecccCCCceEEEcCCCCEEEEEcCCC---cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC
Q psy16005 155 ---SKISIVEN-GAKVSSLPIDYEPSSISLDHEHGLVAVGGADS---KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN 227 (248)
Q Consensus 155 ---~~i~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~ 227 (248)
..|++||. ......+.....+.+++|+|+|++|++++.++ .|++||+..+.. .. ...|.+.|.+++|+|..
T Consensus 332 ~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~-~~-l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 332 GGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR-LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE-CCCSSSEEEEEEECCCC
T ss_pred CCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE-EE-eeCCCCCCcCCcccccc
Confidence 58999992 23334444444788999999999999988776 799999975543 23 33688899999999975
Q ss_pred c
Q psy16005 228 E 228 (248)
Q Consensus 228 ~ 228 (248)
.
T Consensus 410 ~ 410 (415)
T 2hqs_A 410 H 410 (415)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-27 Score=182.48 Aligned_cols=188 Identities=11% Similarity=0.112 Sum_probs=143.7
Q ss_pred ccccCCcEEEEeCC--------CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEE
Q psy16005 14 RTQRGQPIVLGGDP--------KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVR 83 (248)
Q Consensus 14 ~~~~~~v~~~~~s~--------~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~ 83 (248)
.+|.+.|.+++|+| |+++|++++ |++|+|||+.++.....+..|..++.+++|+|++ .+|++++.||+|+
T Consensus 133 ~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~ 212 (393)
T 4gq1_A 133 SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 212 (393)
T ss_dssp TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence 46999999999998 889999987 9999999999888887788899999999999987 5899999999999
Q ss_pred EEECCCCceeee-----------------------eeccCCCCCeeEEEEe-cCCCEEEEEeCCc-EEEEEccCCCC---
Q psy16005 84 IWDTVNKEHILK-----------------------NEFHPIGGPIKDIAWS-PDNQRMISIVENG-AKVSSLPIDYE--- 135 (248)
Q Consensus 84 iwd~~~~~~~~~-----------------------~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~-~~i~~~~~~~~--- 135 (248)
+||+++++.... ....+|...+.++.|+ +|++.+++++.++ +++|++.....
T Consensus 213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~ 292 (393)
T 4gq1_A 213 IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE 292 (393)
T ss_dssp EEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred EEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence 999987653211 1123577889999987 7999999999877 49999743211
Q ss_pred -------------------------CceeEeCC--CCCEEEEEcCCCeEEEEE--CCceee-eecccCCCceEEEcCCCC
Q psy16005 136 -------------------------PSSISLDH--EHGLVAVGGADSKISIVE--NGAKVS-SLPIDYEPSSISLDHEHG 185 (248)
Q Consensus 136 -------------------------~~~~~~~~--~~~~~~~~~~~~~i~~~~--~~~~~~-~~~~~~~~~~~~~s~~~~ 185 (248)
.....+.+ ++.++++++.|+.|++|| .++... ...+...+.+++|+|||+
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 293 ISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp -----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS
T ss_pred EeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC
Confidence 11122322 344677888999999999 344333 345677899999999999
Q ss_pred EEEEEcCCCcEEEEEcC
Q psy16005 186 LVAVGGADSKVHIYELN 202 (248)
Q Consensus 186 ~l~~~~~d~~v~i~d~~ 202 (248)
+||+++.+| +.+|.+.
T Consensus 373 ~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 373 HLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEEESSE-EEEEEEG
T ss_pred EEEEEeCCC-eEEEEEe
Confidence 999998776 6676654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=196.66 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=173.3
Q ss_pred cCCcEEEEeCCCCCEEEEeC--Cc-----EEEEEecCCCceeeeeecCCc------------------------ceEEEE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GN-----SVIIRNIENPAISDIYTEHSC------------------------AVNVAK 65 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~-----~v~v~~~~~~~~~~~~~~~~~------------------------~v~~~~ 65 (248)
...+.+++|||||++|++++ ++ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 45799999999999999875 66 899999999887766654432 378999
Q ss_pred ECcCCcEEEEEccCCeEEEEECCCC---ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC--------
Q psy16005 66 YSPSGFYIASGDISGKVRIWDTVNK---EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY-------- 134 (248)
Q Consensus 66 ~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-------- 134 (248)
|||||++|++++. +.|++||+.++ +. ..+..+...+..++|+|||++|++++++.+.+|++....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE---EEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCC
Confidence 9999999999886 99999999887 42 345567788999999999999999998888999875321
Q ss_pred -C-----------------CceeEeCCCCCEEEEEcCCC---------------------------------eEEEEE--
Q psy16005 135 -E-----------------PSSISLDHEHGLVAVGGADS---------------------------------KISIVE-- 161 (248)
Q Consensus 135 -~-----------------~~~~~~~~~~~~~~~~~~~~---------------------------------~i~~~~-- 161 (248)
. +..+.|+|+|+.|++++.|+ .|.+||
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 1 36789999999999887654 778888
Q ss_pred C-Cceeeee---cccCCCceEEEcCCCCEEEEEcC-----CCcEEEEEcCCCCCCCcccccCCc---CeEEEEEcCCCcE
Q psy16005 162 N-GAKVSSL---PIDYEPSSISLDHEHGLVAVGGA-----DSKVHIYELNNKSLSPKAELDHLG---PVTDCSFSPSNEY 229 (248)
Q Consensus 162 ~-~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~-----d~~v~i~d~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~ 229 (248)
. ++..... .+...+..++| |||++|++++. +..|++||+.+++........... .+..++|+|||++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 3 3332222 13345688999 99999987653 567999999998765433321222 4568999999998
Q ss_pred EEEEcCCCeEEEEECC
Q psy16005 230 LVASDAHRKVVLYRVP 245 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~ 245 (248)
+++++.||.++||.++
T Consensus 351 ~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 351 LWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEECTTSSCEEEEEC
T ss_pred EEEecCCCccEEEEEc
Confidence 8899999988888764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-26 Score=182.21 Aligned_cols=237 Identities=10% Similarity=0.094 Sum_probs=176.5
Q ss_pred ecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEec--CCCceeeeeecCCcceEEEEECc----CCcEEEEEcc-C
Q psy16005 8 IFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNI--ENPAISDIYTEHSCAVNVAKYSP----SGFYIASGDI-S 79 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~--~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-d 79 (248)
++..++.++. +.+++|+|||++|++++ ++.|.+||+ .+++.+..+. +...+..++|+| +|+++++++. +
T Consensus 171 ~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~ 247 (543)
T 1nir_A 171 IVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWP 247 (543)
T ss_dssp EEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred EEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccC
Confidence 3444443332 88999999999999987 899999999 7888888776 455679999999 9999999885 8
Q ss_pred CeEEEEECCCCceeeeeeccC--------C-CCCeeEEEEecCCCEEEEEeCC--cEEEEEccC-----------CCCCc
Q psy16005 80 GKVRIWDTVNKEHILKNEFHP--------I-GGPIKDIAWSPDNQRMISIVEN--GAKVSSLPI-----------DYEPS 137 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~--------~-~~~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~-----------~~~~~ 137 (248)
++|.+||..+++.+......+ | ...+..+.++|++..+++...+ .+.+|++.. ...+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~ 327 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLH 327 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCC
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCcc
Confidence 999999999888654433321 2 2378899999988877666533 356777543 23466
Q ss_pred eeEeCCCCCEEEE-EcCCCeEEEEE--CCceeeeecccCCC---ceEE-EcCC-CCEEEEEc-CCCcEEEEEcCC-----
Q psy16005 138 SISLDHEHGLVAV-GGADSKISIVE--NGAKVSSLPIDYEP---SSIS-LDHE-HGLVAVGG-ADSKVHIYELNN----- 203 (248)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~~---~~~~-~s~~-~~~l~~~~-~d~~v~i~d~~~----- 203 (248)
.+.|+|+++++++ +..+++|.+|| +++.+..+.....+ .... ++|+ +..++++. .|++|.+||+.+
T Consensus 328 ~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp CEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 7899999997665 45689999999 56666666532211 2233 4677 55666665 589999999988
Q ss_pred --CCCCCcccccCCcCeEEEEEcCCCcEEEEEc-------CCCeEEEEECCCCC
Q psy16005 204 --KSLSPKAELDHLGPVTDCSFSPSNEYLVASD-------AHRKVVLYRVPDFE 248 (248)
Q Consensus 204 --~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~ 248 (248)
.+.+..+. .|...+..++|+|++++|++++ .+++|.+||+.+++
T Consensus 408 ~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 408 YAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred hcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 45544443 5777788999999999999987 26799999999875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=199.75 Aligned_cols=226 Identities=9% Similarity=0.011 Sum_probs=168.3
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCc---ceEEEEECcCCcEEEEEccC---------CeEEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGDIS---------GKVRIW 85 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------g~i~iw 85 (248)
..+.+++|+|||++++++.|+.|++||+.+++....+..|.. .|.+++|||||++|++++.+ +.+.+|
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 457789999999988775699999999999988777766654 48999999999999998764 788999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------CC------------------Cc
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------YE------------------PS 137 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------~~------------------~~ 137 (248)
|+.+++.........|...+..++|+|||+.|++++.+.+.+|++... .. ..
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence 999887522223334555688999999999999999988888886432 11 15
Q ss_pred eeEeCCCCCEEEEEcCCC----------------------------------eEEEEE--CCceeeeecc-------cCC
Q psy16005 138 SISLDHEHGLVAVGGADS----------------------------------KISIVE--NGAKVSSLPI-------DYE 174 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~----------------------------------~i~~~~--~~~~~~~~~~-------~~~ 174 (248)
.+.|+|+|+.|++++.++ .|++|| .++....+.. ...
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 799999999999876543 788898 3333344432 234
Q ss_pred CceEEEcCCCCEEEEEcC----CCcEEEEEcCCCCCCCcccccCCcCe----EEEEEcCCCcEEEEE--cCCC------e
Q psy16005 175 PSSISLDHEHGLVAVGGA----DSKVHIYELNNKSLSPKAELDHLGPV----TDCSFSPSNEYLVAS--DAHR------K 238 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~----d~~v~i~d~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~~d~------~ 238 (248)
+..++|+|||+++++... +..|++||+.+++........+...+ ..++|+|||+.|+.. ..++ .
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 678999999998877643 35799999998876544332344444 378999999977754 4566 5
Q ss_pred EEEEE
Q psy16005 239 VVLYR 243 (248)
Q Consensus 239 i~vw~ 243 (248)
|.+||
T Consensus 337 l~~~d 341 (723)
T 1xfd_A 337 ITVSS 341 (723)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66677
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=172.00 Aligned_cols=228 Identities=13% Similarity=0.134 Sum_probs=159.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecC--CCce--eeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEEECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIE--NPAI--SDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~--~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 88 (248)
+...+.+++|+|+|++|++++ ++.|.+|+++ +++. ...+..+. .+.+++|+|++++|++++ .++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 456788999999999888875 3899999987 5543 33444333 788999999999886665 48899999995
Q ss_pred CCcee-eeeeccCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEccCC----------------CCCceeEeCCCCCEEE
Q psy16005 89 NKEHI-LKNEFHPIGGPIKDIAWSPDNQRMISIV--ENGAKVSSLPID----------------YEPSSISLDHEHGLVA 149 (248)
Q Consensus 89 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~~----------------~~~~~~~~~~~~~~~~ 149 (248)
.+... ....+. ....+.+++|+|+++++++++ ++.+.+|++... ..+..++++|++++++
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 115 DGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp TTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 33211 112233 335688999999999888876 445688887541 1345688999999665
Q ss_pred E-EcCCCeEEEEECC----ce--eeeec---c----cCCCceEEEcCCCCEEEEE-cCCCcEEEEEcC--CCCCCCcccc
Q psy16005 150 V-GGADSKISIVENG----AK--VSSLP---I----DYEPSSISLDHEHGLVAVG-GADSKVHIYELN--NKSLSPKAEL 212 (248)
Q Consensus 150 ~-~~~~~~i~~~~~~----~~--~~~~~---~----~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~--~~~~~~~~~~ 212 (248)
+ +..++.+.+|+.. +. ..... . ...+..++|+|++++|+++ ..++.|.+||+. +++.......
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 4 4588999999942 11 11111 1 1134479999999977754 578999999998 3322211111
Q ss_pred cCCcCeEEEEEcCCCcEEEEEc-CCCeEEEEECC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVP 245 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~ 245 (248)
.....+..++|+|+|++|++++ .++.+.+|+++
T Consensus 274 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 274 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred cCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 2223488999999999888887 57999999543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=172.92 Aligned_cols=218 Identities=15% Similarity=0.174 Sum_probs=162.9
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCC-CceeeeeecC-CcceEEEEECcCCcEEEEEc--cCCeEEEE--ECCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-PAISDIYTEH-SCAVNVAKYSPSGFYIASGD--ISGKVRIW--DTVN 89 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~dg~i~iw--d~~~ 89 (248)
|.+.+.+++|+|+|++|+++.++.|++||+.+ ++.......+ ...+.+++|+|++++|++++ .++...|| +..+
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 67789999999999999999999999999998 8777666555 36789999999999999988 33445554 5555
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEE-EEeCC-cEEEEEccC-----------CCCCceeEeCCCCCEEEEEc-CCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMI-SIVEN-GAKVSSLPI-----------DYEPSSISLDHEHGLVAVGG-ADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~~ 155 (248)
+.. ..+..+ ..+..++|+|+++.|+ ++..+ .+.+|.++. ...+..+.|+|+++.++.++ .++
T Consensus 120 ~~~---~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 120 GTP---RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp CCC---EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred Cce---EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 442 233332 3488999999999887 44444 458888642 23456789999999887665 588
Q ss_pred eEEEEE---CCceeeeec-ccCCCceEEEcCCCCEEEEEcCC-----------CcEEEEEcCCCCCCCccc-ccCCcCeE
Q psy16005 156 KISIVE---NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGAD-----------SKVHIYELNNKSLSPKAE-LDHLGPVT 219 (248)
Q Consensus 156 ~i~~~~---~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d-----------~~v~i~d~~~~~~~~~~~-~~~~~~v~ 219 (248)
.+.+|+ .+.....+. +...+..++|+|++++|++++.+ +.|++||+.+++...... .+|...+.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 888887 344444443 34456789999999999888765 569999999877533322 25778899
Q ss_pred EEEEcCCCcEEEEEcCCC
Q psy16005 220 DCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~ 237 (248)
.++|+|++++|++++.+.
T Consensus 276 ~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 276 SPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCBCTTSSEEEEEEECC
T ss_pred cceECCCCCEEEEEEecc
Confidence 999999999998887653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-25 Score=168.62 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=172.8
Q ss_pred cCCcEEEEeCCCCCEEEEeC--------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEEC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDT 87 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~ 87 (248)
...+..++|+|+|+.+++++ ++.|.+||..+++....+.. ...+.+++|+|++++++ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 35678899999999888875 56899999999988887754 34578899999998554 5566799999999
Q ss_pred CCCceeeeeeccCCC-------CCeeEEEEecCCCEEEEEe---CCcEEEEEcc----------CCCCCceeEeCCCCCE
Q psy16005 88 VNKEHILKNEFHPIG-------GPIKDIAWSPDNQRMISIV---ENGAKVSSLP----------IDYEPSSISLDHEHGL 147 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~---~~~~~i~~~~----------~~~~~~~~~~~~~~~~ 147 (248)
.+++........... ..+.+++|+|++++++++. +..+.+|+.. ....+..+.++|+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 998865433332111 1268899999999888776 2336777764 2334788999999999
Q ss_pred EEEEcCCCeEEEEE--CCceeeeecc-----cCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLPI-----DYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
++++..++.+.+|| .++....+.. ...+..++++|+++++++++. ++.|.+||..+++.......+. ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~ 275 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SL 275 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---Cc
Confidence 99999999999999 4555555543 223567999999997777665 5899999999988765554322 25
Q ss_pred EEEEcCCCcEEEEEc-CCCeEEEEECCCCC
Q psy16005 220 DCSFSPSNEYLVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~ 248 (248)
.++|+|++++++.++ .++.|.+||+.+++
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 699999999766554 68999999998763
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=165.90 Aligned_cols=215 Identities=6% Similarity=-0.016 Sum_probs=154.4
Q ss_pred cEEEEeCCCCC---EEEEeCCcEEEEEecCCC---ceeeeeecCCc-------------------------ceEEEEECc
Q psy16005 20 PIVLGGDPKGK---NFLYTNGNSVIIRNIENP---AISDIYTEHSC-------------------------AVNVAKYSP 68 (248)
Q Consensus 20 v~~~~~s~~~~---~l~~~~~~~v~v~~~~~~---~~~~~~~~~~~-------------------------~v~~~~~s~ 68 (248)
+.++.|-.-|- .++++....|++|+..++ +..+.+..|.. .|.+++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 44555655443 566677999999999888 66666666654 455677777
Q ss_pred C----CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCC-
Q psy16005 69 S----GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDH- 143 (248)
Q Consensus 69 ~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~- 143 (248)
+ ++.+++++. .+++|++.+++.+ .....+|...|..++++|+|+.+.... -+...+..++|++
T Consensus 122 d~~~~~~~l~s~g~--~~~v~~l~~g~lv-~ss~~g~d~~V~~~~~s~dG~~~~s~~---------~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 122 DDESEKQVLLKSGN--IKAVLGLTKRRLV-SSSGTLSDQQVEVMTFAEDGGGKENQF---------LMPPEETILTFAEV 189 (356)
T ss_dssp ----CCEEEEEEEE--EEEEEEETTTEEE-EEESSSTTCEEEEEEECTTSCEEEEEE---------ECCCSSCEEEEEEE
T ss_pred CccccccEEEeCCC--eEEEEecCCCcEE-EecccCCCCcEEEEEECCCCceeeeec---------cCCCceeeEEeecc
Confidence 7 778888764 4888999876644 233567899999999999998776432 2345566778887
Q ss_pred --CCCEEEEEcCCCeEEEEE--CCceeeeeccc----CCCceEEEcCCCCEE------------EEEcCCCcEEEEEcCC
Q psy16005 144 --EHGLVAVGGADSKISIVE--NGAKVSSLPID----YEPSSISLDHEHGLV------------AVGGADSKVHIYELNN 203 (248)
Q Consensus 144 --~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~----~~~~~~~~s~~~~~l------------~~~~~d~~v~i~d~~~ 203 (248)
++.++++++.|++|++|| +++.+..+..+ ..+.+++|+|+|.++ ++|+.|++|++||..+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 779999999999999999 67888888632 245677999999876 5677899999999999
Q ss_pred CCCCCcc----cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKA----ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
++.+... ..+|...+.+..++ +.++++++.|++|+|||+.+++
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc
Confidence 8765433 23565555544444 7889999999999999999875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=166.55 Aligned_cols=207 Identities=14% Similarity=0.048 Sum_probs=158.0
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-CceeeeeeccCC-CCCeeEEEEecCC
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-KEHILKNEFHPI-GGPIKDIAWSPDN 114 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~ 114 (248)
++.|++||+.+++... +..|...+.+++|+|++++|++++ ++.|++||+.+ ++.. .....+ ...+.+++|+|++
T Consensus 21 ~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--KVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE--ECCCTTCCCBCSCCEECTTS
T ss_pred ceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce--EeccccccccccceEECCCC
Confidence 7899999999887664 456888999999999999999976 78999999998 7643 233333 4678999999999
Q ss_pred CEEEEEeCC---cEEEEEccC----------CCCCceeEeCCCCCEEE-EEcCCCeEEEEE---C-CceeeeecccCCCc
Q psy16005 115 QRMISIVEN---GAKVSSLPI----------DYEPSSISLDHEHGLVA-VGGADSKISIVE---N-GAKVSSLPIDYEPS 176 (248)
Q Consensus 115 ~~l~~~~~~---~~~i~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~---~-~~~~~~~~~~~~~~ 176 (248)
++|++++.+ ...+|.++. ...+..+.|+|+++.++ ++..++.+.+|+ . ++..........+.
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND 176 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence 999999843 356666542 22355678999999877 677889888887 2 23333333456678
Q ss_pred eEEEcCCCCEEEEEc-CCCcEEEEEcCC-CCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC-----------CeEEEEE
Q psy16005 177 SISLDHEHGLVAVGG-ADSKVHIYELNN-KSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH-----------RKVVLYR 243 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~-~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~vw~ 243 (248)
+++|+|++++|++++ .++.+++|++.. +... .....|...+..++|+|+|++|++++.+ +.|++||
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV-ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTSSCE-EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred cceECCCCCEEEEEecCCCCccEEEECCCCCCc-EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 999999999887765 588999999863 3333 2333577789999999999999888765 5699999
Q ss_pred CCCCC
Q psy16005 244 VPDFE 248 (248)
Q Consensus 244 ~~~~~ 248 (248)
+.+++
T Consensus 256 ~~~~~ 260 (297)
T 2ojh_A 256 MDGGN 260 (297)
T ss_dssp TTSCS
T ss_pred cCCCC
Confidence 98763
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-25 Score=169.32 Aligned_cols=230 Identities=13% Similarity=0.183 Sum_probs=157.4
Q ss_pred ccCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCce--eeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEEECC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAI--SDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTV 88 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 88 (248)
+...+..++|+|||+ |++++ ++.|++|++.+++. +..+..+...+..++|+|+|++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999 55443 47999999977653 334445677788999999999888877 67999999996
Q ss_pred C-CceeeeeeccC---------CCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCC--------------CCCceeEeCC
Q psy16005 89 N-KEHILKNEFHP---------IGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPID--------------YEPSSISLDH 143 (248)
Q Consensus 89 ~-~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~--------------~~~~~~~~~~ 143 (248)
. +.......+.. ....+.+++|+|+|+.+++...+ .+.+|++... ..+..++|+|
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 3 33221122211 12348889999999944444333 4688887621 1345689999
Q ss_pred CCCEEEE-EcCCCeEEEEEC----Cce--eeeecc-c------CCCceEEEcCCCCEEEE-EcCCCcEEEEEcCCC-C--
Q psy16005 144 EHGLVAV-GGADSKISIVEN----GAK--VSSLPI-D------YEPSSISLDHEHGLVAV-GGADSKVHIYELNNK-S-- 205 (248)
Q Consensus 144 ~~~~~~~-~~~~~~i~~~~~----~~~--~~~~~~-~------~~~~~~~~s~~~~~l~~-~~~d~~v~i~d~~~~-~-- 205 (248)
+++++++ ...++.+.+|+. ++. ...+.. . ..+..++|+|||++|++ ...++.|.+|++... .
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9995555 567889999982 222 112211 1 23677999999998754 456899999999732 2
Q ss_pred CCCcccccCCcCeEEEEEcCCCcEEEEEcC-CCeEEEEEC--CCC
Q psy16005 206 LSPKAELDHLGPVTDCSFSPSNEYLVASDA-HRKVVLYRV--PDF 247 (248)
Q Consensus 206 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~--~~~ 247 (248)
..... ..+...+..++|+|||++|++++. ++.+.+|++ +++
T Consensus 277 ~~~~~-~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 277 LIQQI-STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEE-ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EeEEE-ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 11111 134556899999999998888765 489999954 454
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-25 Score=166.18 Aligned_cols=222 Identities=9% Similarity=-0.007 Sum_probs=162.3
Q ss_pred EEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc-CCeEEEEECCCCceeeeeecc
Q psy16005 23 LGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 23 ~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~ 99 (248)
..|.++++.++.+ . ++.|.+||+.+++....+..+...+ +++|+|+++++++++. ++.|.+||+.+++.. ...+.
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~ 80 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQ 80 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecc
Confidence 3466666665544 3 8899999999999888777666667 9999999997766554 889999999988751 23444
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCC----cEEEEEccC---------CCCCceeEeCCCCCEEE-EEcCCCe-EEEEECC-
Q psy16005 100 PIGGPIKDIAWSPDNQRMISIVEN----GAKVSSLPI---------DYEPSSISLDHEHGLVA-VGGADSK-ISIVENG- 163 (248)
Q Consensus 100 ~~~~~v~~~~~~~~~~~l~~~~~~----~~~i~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~-i~~~~~~- 163 (248)
.+..+..+++|+|+++++++...+ .+.+|++.. ...+..++++|+++.++ +...++. +.+|+..
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 455555559999999999966655 478888753 34567889999998554 4456677 9999822
Q ss_pred --ce----eeeecccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCC---CCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 164 --AK----VSSLPIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSL---SPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 164 --~~----~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.. ...+.....+..++|+|+|++++++ ..++.|++||+.+++. ..... ....+..++|+|||++|+.+
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEE
Confidence 12 1223445567899999999966554 4688999999998876 43333 44677899999999987666
Q ss_pred c-CCCeEEEEECCCCC
Q psy16005 234 D-AHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~-~d~~i~vw~~~~~~ 248 (248)
+ .++.|.+||+.+++
T Consensus 239 ~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGT 254 (331)
T ss_dssp CSSEEEEEEEETTTTE
T ss_pred EcCCCEEEEEECCCCc
Confidence 4 57889999998763
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-25 Score=184.25 Aligned_cols=229 Identities=12% Similarity=0.136 Sum_probs=169.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCC-----CceeeeeecCCcc--------------eEEEEECcCCcEEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTEHSCA--------------VNVAKYSPSGFYIASG 76 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~-----~~~~~~~~~~~~~--------------v~~~~~s~~~~~l~~~ 76 (248)
+.+.+.+++|||||+.|+++.++.|++|++.+ ++..+....+... +.++.|||||++|+++
T Consensus 119 ~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 119 TNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp CTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred CcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 34567789999999999998899999999998 7766544444333 4789999999999998
Q ss_pred c---------------------------------cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 77 D---------------------------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 77 ~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
+ .+..|.+||+.+++.........|...+..++|+|||+.|++++.+
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence 7 3467999999988754322223566789999999999999887644
Q ss_pred ------cEEEEEccCCC---------------CCceeEeCC--CCCEEEEEcCCCeEEEEE---CCceeeeecc-cCCCc
Q psy16005 124 ------GAKVSSLPIDY---------------EPSSISLDH--EHGLVAVGGADSKISIVE---NGAKVSSLPI-DYEPS 176 (248)
Q Consensus 124 ------~~~i~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~i~~~~---~~~~~~~~~~-~~~~~ 176 (248)
.+.+|++.... .+..+.|+| ++++++++..++.+.+|. .+.....+.. ...+.
T Consensus 279 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred CCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 35777765430 124578999 999999998898888876 4555555543 34455
Q ss_pred e-EEEcCCCCEEEEEcC-CC----cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC----CeEEEEECCC
Q psy16005 177 S-ISLDHEHGLVAVGGA-DS----KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH----RKVVLYRVPD 246 (248)
Q Consensus 177 ~-~~~s~~~~~l~~~~~-d~----~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~vw~~~~ 246 (248)
. ++|+|+++.|++++. ++ .|+.||+.+++. ..+ .+...+.+++|+|||++++....+ +.+++||+.+
T Consensus 359 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 359 NFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred eeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 5 799999997766554 44 577777777653 222 366779999999999988876443 5699999987
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 436 ~ 436 (706)
T 2z3z_A 436 G 436 (706)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=189.64 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=171.3
Q ss_pred CcCcceecccccccccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCC-cceEEEEECcCCcEEEEEcc
Q psy16005 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDI 78 (248)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 78 (248)
+.+..+++..+......+|.+++|+|||+.|++++ ++.+.||++++++..+ +..+. ..+.+++|+|| +++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~ 83 (582)
T 3o4h_A 6 PVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDV 83 (582)
T ss_dssp CCCHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred eccHHHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEecc
Confidence 34444455555555677899999999999999875 8999999997766555 44454 68999999999 77777765
Q ss_pred ---CCeEEEEECCC--CceeeeeeccCCCCCeeEEEEecCCCE--EEEEeCCcEEEEEccCCC-------CCceeEeCCC
Q psy16005 79 ---SGKVRIWDTVN--KEHILKNEFHPIGGPIKDIAWSPDNQR--MISIVENGAKVSSLPIDY-------EPSSISLDHE 144 (248)
Q Consensus 79 ---dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~~i~~~~~~~-------~~~~~~~~~~ 144 (248)
+...++|.+.. ..... .+... ..+...+|+||++. ++++..++..+|++.... ....+.++|+
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~--~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spD 160 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQ--RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR 160 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCE--ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE
T ss_pred CCCCcceEEEEEeccCCCccc--cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCC
Confidence 45556655433 22111 22222 23446788888864 444556777899876432 2267889999
Q ss_pred CCEEEEEcCC----CeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCC--cEEEEEcCCCCCCCcccccCCc
Q psy16005 145 HGLVAVGGAD----SKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS--KVHIYELNNKSLSPKAELDHLG 216 (248)
Q Consensus 145 ~~~~~~~~~~----~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~--~v~i~d~~~~~~~~~~~~~~~~ 216 (248)
|+.+++++.+ ..|++|| .++......+...+..++|||||+.|+++..++ .|++||+.+++.. ...+|..
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~ 238 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSK 238 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCS
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCc
Confidence 9999987766 7799999 344433333445578999999999999888888 8999999988775 3335666
Q ss_pred CeEEEE--------EcCCCcEEEEEcCCCeEEEEEC
Q psy16005 217 PVTDCS--------FSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 217 ~v~~~~--------~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.+..++ |+|||..+++++.++.+++|++
T Consensus 239 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 239 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677677 9999988889999999999997
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-25 Score=167.48 Aligned_cols=220 Identities=13% Similarity=0.127 Sum_probs=163.9
Q ss_pred EEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCC-cceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeec
Q psy16005 22 VLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.++++++++++++++ ++.|++||+.+++....+..+. ..+..++|+|+++++ +++..++.|.+||+.+++.......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 356788888888775 8999999999998887776443 257889999999865 4556789999999998875533332
Q ss_pred cCC----CCCeeEEEEecCCCEEEEEeC-------------CcEEEEEccC------------CCCCceeEeCCCCCEEE
Q psy16005 99 HPI----GGPIKDIAWSPDNQRMISIVE-------------NGAKVSSLPI------------DYEPSSISLDHEHGLVA 149 (248)
Q Consensus 99 ~~~----~~~v~~~~~~~~~~~l~~~~~-------------~~~~i~~~~~------------~~~~~~~~~~~~~~~~~ 149 (248)
... ...+..++|+|||+++++++. +.+.+|++.. ...+.+++++|+++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 211 233788999999999998873 5578898753 22356778999999 55
Q ss_pred EEcCCCeEEEEE--CCceeeeecccC------------------------------------------------------
Q psy16005 150 VGGADSKISIVE--NGAKVSSLPIDY------------------------------------------------------ 173 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~~~~------------------------------------------------------ 173 (248)
+++. .|.+|| .++....++...
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 5443 399998 444444443221
Q ss_pred ---------------CCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 174 ---------------EPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 174 ---------------~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
.+..++++| ++++++++ ++.|.+||+.+++...... ....+.+++|+|++++|++++.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFN 316 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSS
T ss_pred cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc--CCCCccceEECCCCCEEEEecCCC
Confidence 234567789 99999888 8899999999887654443 334578999999999998888899
Q ss_pred eEEEEECCCCC
Q psy16005 238 KVVLYRVPDFE 248 (248)
Q Consensus 238 ~i~vw~~~~~~ 248 (248)
.|.+||+++++
T Consensus 317 ~v~v~d~~~~~ 327 (349)
T 1jmx_B 317 DLAVFNPDTLE 327 (349)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEeccccc
Confidence 99999998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=173.07 Aligned_cols=238 Identities=13% Similarity=0.097 Sum_probs=179.3
Q ss_pred ecccccccccCCcEEEEeCC----CCCEEEEeC--CcEEEEEecCCCceeeeeec----------CCc-ceEEEEECcCC
Q psy16005 8 IFATLPRTQRGQPIVLGGDP----KGKNFLYTN--GNSVIIRNIENPAISDIYTE----------HSC-AVNVAKYSPSG 70 (248)
Q Consensus 8 ~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~----------~~~-~v~~~~~s~~~ 70 (248)
++..++ +...+..++|+| ||+++++++ ++.|.+||..+++++..+.. |.. .+.++.++|++
T Consensus 214 ~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 214 KVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred EEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 344454 234578999999 999999886 89999999999998887754 223 68999999966
Q ss_pred c-EEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEccCCCC---------C--
Q psy16005 71 F-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV--ENGAKVSSLPIDYE---------P-- 136 (248)
Q Consensus 71 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~---------~-- 136 (248)
. ++++...++.|.+||+.+.+.+....+ .+...+..++|+|+|+++++++ ++.+.+|+...... +
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 4 566778899999999988765432233 3456788999999999888775 45678898753211 1
Q ss_pred -ceeE-eCCC-CCEEEEEc-CCCeEEEEE--C-------Cceeeeeccc-CCCceEEEcCCCCEEEEEc-------CCCc
Q psy16005 137 -SSIS-LDHE-HGLVAVGG-ADSKISIVE--N-------GAKVSSLPID-YEPSSISLDHEHGLVAVGG-------ADSK 195 (248)
Q Consensus 137 -~~~~-~~~~-~~~~~~~~-~~~~i~~~~--~-------~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~-------~d~~ 195 (248)
.... ++|+ +.+++++. .+++|.+|| . .+.++.++.+ ..+..++++|++++|++++ .+++
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 1223 3566 56667765 689999999 3 5667777754 4568899999999999987 2679
Q ss_pred EEEEEcCCCCCCCccc--------ccCCcCeEEEEEcCCCcEEEEE-----cCCCeEEEEECCCCC
Q psy16005 196 VHIYELNNKSLSPKAE--------LDHLGPVTDCSFSPSNEYLVAS-----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 196 v~i~d~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~-----~~d~~i~vw~~~~~~ 248 (248)
|.+||+.+++...... ..+...+..+.|+|+|+.++++ +.++.|.|||.+|+|
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 9999999988763321 2456789999999999998866 247999999999875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=163.23 Aligned_cols=213 Identities=12% Similarity=0.111 Sum_probs=159.4
Q ss_pred CEEEEeC-CcEEEEEecCCCceeeeeecCCc--ceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccC---CC
Q psy16005 30 KNFLYTN-GNSVIIRNIENPAISDIYTEHSC--AVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHP---IG 102 (248)
Q Consensus 30 ~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~ 102 (248)
+++++++ ++.|.+||+.+++....+..... .+.+++|+|+++.+ ++++.++.|.+||+.+++.+....... +.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 3566654 99999999999988877753321 47889999999765 556678999999999887654333322 12
Q ss_pred CCeeEEEEecCCCEEEEEe-------------CCcEEEEEccC---------CCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 103 GPIKDIAWSPDNQRMISIV-------------ENGAKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~-------------~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
..+..++|+|+|++++++. ++.+.+|++.. ...+..+.++|+++.++++ ++.+.+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 2677899999999998885 35568888642 3456788999999988877 6789999
Q ss_pred E--CCceeeeeccc------------------------------------------------------------------
Q psy16005 161 E--NGAKVSSLPID------------------------------------------------------------------ 172 (248)
Q Consensus 161 ~--~~~~~~~~~~~------------------------------------------------------------------ 172 (248)
| .++....+...
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 8 33333222211
Q ss_pred -CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 173 -YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 173 -~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+..++|+|++++++++ ++.|++||+.+++...... ....+.+++|+|+|++|++++.++.|.+||+.+++
T Consensus 240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 112358999999999888 7899999999887654443 33467899999999999999899999999998874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=182.66 Aligned_cols=220 Identities=11% Similarity=0.109 Sum_probs=162.1
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
+.+++|||||++|++++++.|++||+.++. ....+..|...+.+++|||||++|++++ ++.|++||+.+++.. ..
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~--~~ 187 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM--QL 187 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE--EC
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE--Ee
Confidence 788999999999999988999999998873 3445667888899999999999999887 469999999887643 22
Q ss_pred ccCCCCC----------------eeEEEEecCCCEEEEEeCC----------------------------------cEEE
Q psy16005 98 FHPIGGP----------------IKDIAWSPDNQRMISIVEN----------------------------------GAKV 127 (248)
Q Consensus 98 ~~~~~~~----------------v~~~~~~~~~~~l~~~~~~----------------------------------~~~i 127 (248)
...+... +..++|+|||++|++++.+ .+.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 2222221 4789999999999988643 2355
Q ss_pred EEccC-C------------CCCceeEeCCCCCEEEEEcC-----CCeEEEEE--CCceeeeecccC-----CCceEEEcC
Q psy16005 128 SSLPI-D------------YEPSSISLDHEHGLVAVGGA-----DSKISIVE--NGAKVSSLPIDY-----EPSSISLDH 182 (248)
Q Consensus 128 ~~~~~-~------------~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~--~~~~~~~~~~~~-----~~~~~~~s~ 182 (248)
|++.. . ..+..++| |+++.++++.. +..|++|| .++....+.... .+..++|+|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 66544 2 12357789 99998887653 56789999 444444443322 346899999
Q ss_pred CCCEEEEEcCCCcEEEEEcCC-CCCCCcccccCCcCeEEE-EEcCCCcEEEEE-cCCC--eEEEEECC
Q psy16005 183 EHGLVAVGGADSKVHIYELNN-KSLSPKAELDHLGPVTDC-SFSPSNEYLVAS-DAHR--KVVLYRVP 245 (248)
Q Consensus 183 ~~~~l~~~~~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~-~~d~--~i~vw~~~ 245 (248)
||+++++++.+|.++||.+.. ++ . .....|...+..+ .|+|+++.|+.. +.++ .++||+++
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~-~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-A-AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-E-EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-e-eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999999999888887752 33 3 2333567778887 599999977654 4454 89999875
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-23 Score=158.81 Aligned_cols=228 Identities=11% Similarity=0.157 Sum_probs=156.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeCC-----cEEEEEecCC--Ccee--eeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNG-----NSVIIRNIEN--PAIS--DIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIW 85 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~-----~~v~v~~~~~--~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw 85 (248)
+...+..++|+|||++|++++. +.+.+|+++. ++.. .....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 4566778999999999888763 6999998865 4432 233334556777877 777777665 67899999
Q ss_pred ECCCCceeeee----eccC--------CCCCeeEEEEecCCCEEEEEe--CCcEEEEEccCCC-----------------
Q psy16005 86 DTVNKEHILKN----EFHP--------IGGPIKDIAWSPDNQRMISIV--ENGAKVSSLPIDY----------------- 134 (248)
Q Consensus 86 d~~~~~~~~~~----~~~~--------~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~----------------- 134 (248)
++.....+... ...+ +...+.+++|+|+|++++++. .+.+.+|++....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111 1111 123457899999999887776 3456888765322
Q ss_pred ------CCceeEeCCCCCEEEEEc-CCCeEEEEE--CCce--eeeecc----cCCCceEEEcCCCCEEEEEcCC--CcEE
Q psy16005 135 ------EPSSISLDHEHGLVAVGG-ADSKISIVE--NGAK--VSSLPI----DYEPSSISLDHEHGLVAVGGAD--SKVH 197 (248)
Q Consensus 135 ------~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~~~~--~~~~~~----~~~~~~~~~s~~~~~l~~~~~d--~~v~ 197 (248)
.+..++|+|+++++++++ .++.|.+|+ .++. +..+.. ...+..++|+|||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 245789999999777666 689999999 3332 222211 1235689999999988776654 8899
Q ss_pred EEEcC--CCCCCCcccccCCcCeEEEEEcCCCcEEEEEc-CCCeEEEEECC
Q psy16005 198 IYELN--NKSLSPKAELDHLGPVTDCSFSPSNEYLVASD-AHRKVVLYRVP 245 (248)
Q Consensus 198 i~d~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~ 245 (248)
+|++. +++............+..++|+|||++|++++ .++.|.+|+++
T Consensus 286 v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 99996 34422111112245688999999999888886 67899996553
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=186.37 Aligned_cols=223 Identities=16% Similarity=0.148 Sum_probs=163.1
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCc---ceEEEEECcCCcEEEEEcc---------CCeEEEEECCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGDI---------SGKVRIWDTVN 89 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~ 89 (248)
+++|+|||++++.+.++.|++||+.+++....+..+.. .+.+++|||||++|++++. ++.|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 78999999877777799999999999988776655543 3899999999999998876 78999999998
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC----------------------------CCceeEe
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY----------------------------EPSSISL 141 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------------~~~~~~~ 141 (248)
++.+....+ ...+..++|+|||+.|+++.++.+.+|++.... ....+.|
T Consensus 100 g~~~~~~~l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 100 GEFVRGNEL---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TEECCSSCC---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred Cccccceec---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 875211222 256889999999999999998888999875321 1147999
Q ss_pred CCCCCEEEEEcCCC----------------------------------eEEEEECC-cee---eee-------cccCCCc
Q psy16005 142 DHEHGLVAVGGADS----------------------------------KISIVENG-AKV---SSL-------PIDYEPS 176 (248)
Q Consensus 142 ~~~~~~~~~~~~~~----------------------------------~i~~~~~~-~~~---~~~-------~~~~~~~ 176 (248)
+|||+.|++++.|. .|++||.. ... ..+ .+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999877542 67888832 221 111 1233467
Q ss_pred eEEEcCCCCEEEEEcCC----CcEEEEE----cCCCCCCCccc---ccCCcCeE-----EEEEcCCCcEEEE--EcCCC-
Q psy16005 177 SISLDHEHGLVAVGGAD----SKVHIYE----LNNKSLSPKAE---LDHLGPVT-----DCSFSPSNEYLVA--SDAHR- 237 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d----~~v~i~d----~~~~~~~~~~~---~~~~~~v~-----~~~~s~~~~~l~~--~~~d~- 237 (248)
.++|+||++++++.... ..|.+|| +.+++...... ..|...+. .+.|+|||+.|+. ...+|
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 89999998877764432 3488999 77776654442 35666666 8899999996654 44454
Q ss_pred -eEEEEECCCC
Q psy16005 238 -KVVLYRVPDF 247 (248)
Q Consensus 238 -~i~vw~~~~~ 247 (248)
.|.+|++.++
T Consensus 337 ~~l~~~~~~~~ 347 (719)
T 1z68_A 337 KHIHYIKDTVE 347 (719)
T ss_dssp EEEEEESSCST
T ss_pred eEEEEEECCCC
Confidence 5677776654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-24 Score=176.16 Aligned_cols=224 Identities=12% Similarity=0.061 Sum_probs=163.5
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC-----Cce
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN-----KEH 92 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-----~~~ 92 (248)
..+.+++|||| +.++++.++.+++||+.+++... +..+...+.+++|||||+.|+++ .++.|++||+.+ ++.
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 56999999999 77777778999999998886654 44567778899999999999985 689999999988 664
Q ss_pred eeeeeccCCCCC--------------eeEEEEecCCCEEEEEeC----------------------------------Cc
Q psy16005 93 ILKNEFHPIGGP--------------IKDIAWSPDNQRMISIVE----------------------------------NG 124 (248)
Q Consensus 93 ~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~----------------------------------~~ 124 (248)
.. ....+... +.+++|+|||++|++++. ..
T Consensus 159 ~~--~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 159 IA--VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp EE--SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred EE--eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 32 12222222 588999999999998861 22
Q ss_pred EEEEEccCC------------CCCceeEeCCCCCEEEEEcCCC-----eEEEEE--CCceeeeec---ccC---CCceEE
Q psy16005 125 AKVSSLPID------------YEPSSISLDHEHGLVAVGGADS-----KISIVE--NGAKVSSLP---IDY---EPSSIS 179 (248)
Q Consensus 125 ~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~--~~~~~~~~~---~~~---~~~~~~ 179 (248)
+.+|++... ..+..++|+|+++.+++++.++ .|++|| .++....+. ... .+..++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 577776432 2245789999999999877665 899999 342333322 111 236789
Q ss_pred EcC--CCCEEEEEcCCCcEEEEEcC-CCCCCCcccccCCcCeEE-EEEcCCCcEEEEEcC-CC----eEEEEECCCC
Q psy16005 180 LDH--EHGLVAVGGADSKVHIYELN-NKSLSPKAELDHLGPVTD-CSFSPSNEYLVASDA-HR----KVVLYRVPDF 247 (248)
Q Consensus 180 ~s~--~~~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-d~----~i~vw~~~~~ 247 (248)
|+| ||+++++++.++.++||++. +++....+. .+...+.. ++|+|+++.|+.++. ++ .|..||+.++
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 999 99999999999999999886 444333333 56667776 799999998866544 44 6777777665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-23 Score=155.82 Aligned_cols=214 Identities=14% Similarity=0.160 Sum_probs=152.2
Q ss_pred CEEEEe-C-CcEEEEEecC-CCc--eeeeeecCCcceEEEEECcCCcEEEEEccC-CeEEEEECC--CCceeeeeeccCC
Q psy16005 30 KNFLYT-N-GNSVIIRNIE-NPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDIS-GKVRIWDTV--NKEHILKNEFHPI 101 (248)
Q Consensus 30 ~~l~~~-~-~~~v~v~~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~ 101 (248)
++++++ . ++.|++|+++ +++ .... ..+...+.+++|+|++++|++++.+ +.|.+|++. +++......+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 344444 4 8999999985 332 2333 3567788999999999988888776 999999997 5553333334333
Q ss_pred CCCeeEEEEecCCCEEEEEeC-Cc-EEEEEc---c---------CCCCCceeEeCCCCCEEEEEc-CCCeEEEEEC---C
Q psy16005 102 GGPIKDIAWSPDNQRMISIVE-NG-AKVSSL---P---------IDYEPSSISLDHEHGLVAVGG-ADSKISIVEN---G 163 (248)
Q Consensus 102 ~~~v~~~~~~~~~~~l~~~~~-~~-~~i~~~---~---------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~---~ 163 (248)
..+..++|+|+++++++++. ++ +.+|++ . ....+..++|+|+++.+++++ .++.|.+|+. +
T Consensus 84 -~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 84 -GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp -SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred -CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence 37899999999998887764 44 788988 2 223467889999999887776 8899999992 3
Q ss_pred ceee----ee--cccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCC--CCCCC--cc---ccc--CCcCeEEEEEcCCC
Q psy16005 164 AKVS----SL--PIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNN--KSLSP--KA---ELD--HLGPVTDCSFSPSN 227 (248)
Q Consensus 164 ~~~~----~~--~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~--~~~~~--~~---~~~--~~~~v~~~~~s~~~ 227 (248)
+... .. .....+..++|+|++++++++ ..++.|.+|++.. ++... .. ..+ ....+..++|+|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 3221 11 233467889999999977655 4789999999964 33211 11 101 13356789999999
Q ss_pred cEEEE-EcCCCeEEEEECC
Q psy16005 228 EYLVA-SDAHRKVVLYRVP 245 (248)
Q Consensus 228 ~~l~~-~~~d~~i~vw~~~ 245 (248)
++|++ ...++.|.+|++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEecCCCEEEEEEEc
Confidence 98874 4578999999997
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-24 Score=176.70 Aligned_cols=223 Identities=12% Similarity=0.065 Sum_probs=154.6
Q ss_pred CcEEEEeCCCCCEEEEeCC----------cEEEEEecCCCceeeeee---cCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTNG----------NSVIIRNIENPAISDIYT---EHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~----------~~v~v~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.+.+++|||||++|+++.+ +.+++||+.+++. ..+. .|...+..++|||||+.|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 4889999999999998752 7899999998876 2232 34445889999999999999876 799999
Q ss_pred ECCCCceeeeeeccCCCC------------------CeeEEEEecCCCEEEEEeCC------------------------
Q psy16005 86 DTVNKEHILKNEFHPIGG------------------PIKDIAWSPDNQRMISIVEN------------------------ 123 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~~------------------------ 123 (248)
|+.+++... ....+.. .+.+++|+|||+.|++++.+
T Consensus 140 ~~~~g~~~~--~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 140 AHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp SSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred ECCCCceEE--EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 999877532 2222222 23789999999999988743
Q ss_pred -----------cEEEEEccCCC----------------CCceeEeCCCCCEEEEEcC----CCeEEEEE--CCceeeeec
Q psy16005 124 -----------GAKVSSLPIDY----------------EPSSISLDHEHGLVAVGGA----DSKISIVE--NGAKVSSLP 170 (248)
Q Consensus 124 -----------~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----~~~i~~~~--~~~~~~~~~ 170 (248)
.+.+|++.... .+..++|+|+++++++... +..|++|| .++....+.
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 297 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE
Confidence 35677765432 2345889999998876543 35788999 444443332
Q ss_pred c--cCCC----ceEEEcCCCCEEEE--EcCCC------cEEEEE-cCCCCC--CCcccccCCcCeEE-EEEcCCCcEEEE
Q psy16005 171 I--DYEP----SSISLDHEHGLVAV--GGADS------KVHIYE-LNNKSL--SPKAELDHLGPVTD-CSFSPSNEYLVA 232 (248)
Q Consensus 171 ~--~~~~----~~~~~s~~~~~l~~--~~~d~------~v~i~d-~~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~l~~ 232 (248)
. ...+ ..++|+|||+.|+. +..++ .|++|| ..+++. ...+. .+...+.. ++|+|||+.|+.
T Consensus 298 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEE
T ss_pred eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEE
Confidence 2 2222 37899999997665 44566 567777 344431 33333 23334554 699999999976
Q ss_pred EcCC---CeEEEEECCC
Q psy16005 233 SDAH---RKVVLYRVPD 246 (248)
Q Consensus 233 ~~~d---~~i~vw~~~~ 246 (248)
.+.+ +.+++|+++.
T Consensus 377 ~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EESSSCTTCCEEEEECS
T ss_pred EEcCCCCcceEEEEEeC
Confidence 6554 7899998753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=176.32 Aligned_cols=228 Identities=15% Similarity=0.124 Sum_probs=165.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcc-----eEEEEECcCCcEEEEEccC---------Ce
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA-----VNVAKYSPSGFYIASGDIS---------GK 81 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d---------g~ 81 (248)
......+++|+|||++++++ ++.|++||+.+++....+..|... ...+.|||||++|+.++.+ +.
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 34456789999999999887 999999999999887777766532 2347899999999998876 56
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCC--------------------------
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYE-------------------------- 135 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-------------------------- 135 (248)
+.+||+.+++.. .+..+...+...+|||||+.|+.+.++.+.+|++.....
T Consensus 94 ~~~~d~~~~~~~---~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 94 YDIYDLNKRQLI---TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEEETTTTEEC---CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEEECCCCcEE---EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 779999998743 455667889999999999999999988888888743211
Q ss_pred --CceeEeCCCCCEEEEEcCCC------------------------------------eEEEEEC-----Cc--eeeeec
Q psy16005 136 --PSSISLDHEHGLVAVGGADS------------------------------------KISIVEN-----GA--KVSSLP 170 (248)
Q Consensus 136 --~~~~~~~~~~~~~~~~~~~~------------------------------------~i~~~~~-----~~--~~~~~~ 170 (248)
...+.|+|||+.|+....|. .|++||. ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 12478999999998764221 4677882 31 233332
Q ss_pred -------ccCCCceEEEcCCCCEEEEEcC----CCcEEEEEcCCCC----CCCcc---cccCCcCeE-----EEEEcCCC
Q psy16005 171 -------IDYEPSSISLDHEHGLVAVGGA----DSKVHIYELNNKS----LSPKA---ELDHLGPVT-----DCSFSPSN 227 (248)
Q Consensus 171 -------~~~~~~~~~~s~~~~~l~~~~~----d~~v~i~d~~~~~----~~~~~---~~~~~~~v~-----~~~~s~~~ 227 (248)
....+..++|+|||+.++.... +..|++||+.+++ +.... ...|...|. .+.|+|||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC
Confidence 2334678899999996665532 3479999999987 22111 123554444 78999999
Q ss_pred cEEE-EEcC-C--CeEEEEECCCC
Q psy16005 228 EYLV-ASDA-H--RKVVLYRVPDF 247 (248)
Q Consensus 228 ~~l~-~~~~-d--~~i~vw~~~~~ 247 (248)
+.|+ ..+. + ..|++|++.++
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCS
T ss_pred CEEEEEEEcCCCceEEEEEECCCC
Confidence 9877 5543 3 46888887654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=155.58 Aligned_cols=214 Identities=10% Similarity=0.068 Sum_probs=161.8
Q ss_pred CCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCCc---------ceEEEEECcCCcEEEEEc--cCCeEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHSC---------AVNVAKYSPSGFYIASGD--ISGKVRI 84 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~--~dg~i~i 84 (248)
..+..++|+|+|++++++ . ++.|.+||..+++....+..+.. .+.+++|+|+++++++++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 346789999999976665 3 78999999999988877765432 278899999999887765 4789999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC--------------CCCceeEeCCCCCEEE
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID--------------YEPSSISLDHEHGLVA 149 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~--------------~~~~~~~~~~~~~~~~ 149 (248)
||..+++.. ..+..+...+.+++|+|++++++++..++ +.+|++... ..+..++++|+++.++
T Consensus 169 ~d~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 169 VDGGNIKLK--TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp EETTTTEEE--EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred EcCCCCceE--EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE
Confidence 999988754 33443455688999999999998887655 577776421 1234589999999766
Q ss_pred EEc-CCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 150 VGG-ADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 150 ~~~-~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
++. .++.|.+|| .++.+..+.... ...++|+|+++++++++ .++.|.+||..+++...... ....+.+++|+|
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~ 323 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--TPTHPNSLALSA 323 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--CCSEEEEEEECT
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--cCCCCCeEEEcC
Confidence 655 459999999 556666666544 46799999999666555 68999999999888755443 344689999999
Q ss_pred CCcEEEEEcCC
Q psy16005 226 SNEYLVASDAH 236 (248)
Q Consensus 226 ~~~~l~~~~~d 236 (248)
||++|+.+..+
T Consensus 324 dg~~l~v~~~~ 334 (353)
T 3vgz_A 324 DGKTLYVSVKQ 334 (353)
T ss_dssp TSCEEEEEEEC
T ss_pred CCCEEEEEEcc
Confidence 99977766543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=183.43 Aligned_cols=226 Identities=10% Similarity=0.016 Sum_probs=171.5
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCC-CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIEN-PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
..|.+.+.++.|+++ .++++++ ++.+.+|.+.. +.....+..|. .+...+|+|||+.|+++ .++.|.+||+....
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK 276 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE
Confidence 457888999999998 5555555 77788887653 33444555554 45677999999999887 58999999995433
Q ss_pred eeeeeeccC-----------CCCCeeEEEEe-cCCCEEEEEeCCcEEEEEccCC---------C-CCceeEeCCCCCEEE
Q psy16005 92 HILKNEFHP-----------IGGPIKDIAWS-PDNQRMISIVENGAKVSSLPID---------Y-EPSSISLDHEHGLVA 149 (248)
Q Consensus 92 ~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~~~~~i~~~~~~---------~-~~~~~~~~~~~~~~~ 149 (248)
+. .+.. |...+..++|+ |||+.+++++.+.+.+|++... . .+..+.|+ +++.++
T Consensus 277 -l~--~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~ 352 (1045)
T 1k32_A 277 -IE--KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFI 352 (1045)
T ss_dssp -EE--ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEE
T ss_pred -ee--eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEE
Confidence 21 3332 33468999999 9999999999777788876432 2 45677889 999999
Q ss_pred EEcCCCeEE-EEE-CCceeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 150 VGGADSKIS-IVE-NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 150 ~~~~~~~i~-~~~-~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
.++.+..+. +|+ .+.....+ .+...+..++|+|||++|++++.++.|++||+.+++..... .+|...+.+++||||
T Consensus 353 ~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 353 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDN 431 (1045)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTT
T ss_pred EEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-cCCCCCccceEECCC
Confidence 888888888 888 23333333 33456789999999999999999999999999988765433 268888999999999
Q ss_pred CcEEEEEcCC----------CeEEEEECCCC
Q psy16005 227 NEYLVASDAH----------RKVVLYRVPDF 247 (248)
Q Consensus 227 ~~~l~~~~~d----------~~i~vw~~~~~ 247 (248)
|++|++++.+ +.|++||+.++
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 9999888664 49999999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=167.59 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=140.3
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc----------eee-----eeecCCcceEEEEECcCCcEEE----EEc
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA----------ISD-----IYTEHSCAVNVAKYSPSGFYIA----SGD 77 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~----------~~~-----~~~~~~~~v~~~~~s~~~~~l~----~~~ 77 (248)
...+..+++++++.++++++...+++|+..... ... ....+...|.+++|+|++++|+ +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 346889999999999999874448888753210 000 1113566799999999999999 789
Q ss_pred cCCeEEEEECCCC--------cee-eeeeccCCCCCeeEEEEecC-CCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCE
Q psy16005 78 ISGKVRIWDTVNK--------EHI-LKNEFHPIGGPIKDIAWSPD-NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGL 147 (248)
Q Consensus 78 ~dg~i~iwd~~~~--------~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 147 (248)
.|+.|++||+.++ +.+ ....+.+|...|.+++|+|+ +++
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~------------------------------- 164 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM------------------------------- 164 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE-------------------------------
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE-------------------------------
Confidence 9999999998754 111 12345567888999999886 444
Q ss_pred EEEEcCCCeEEEEECC--cee-eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc------ccCCcCe
Q psy16005 148 VAVGGADSKISIVENG--AKV-SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE------LDHLGPV 218 (248)
Q Consensus 148 ~~~~~~~~~i~~~~~~--~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~------~~~~~~v 218 (248)
+++++.|+.|++||.. ... ....+...+.+++|+|+|++|++|+.||.|++||++ ++...... ..|...|
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeE
Confidence 4456666777777732 222 223356678999999999999999999999999998 33222111 1234589
Q ss_pred EEEEEcCCCcEEEEE-cCCC------eEEEEECCCC
Q psy16005 219 TDCSFSPSNEYLVAS-DAHR------KVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~-~~d~------~i~vw~~~~~ 247 (248)
.+++|++++.++++. +.+| .+++|++...
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999999999887654 3343 3899998753
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-23 Score=179.08 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=171.6
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeec-----------CCcceEEEEEC-cCCcEEEEEccCCeEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-----------HSCAVNVAKYS-PSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~-----------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd 86 (248)
.+...+|+|||+.++++.++.|++|++...+.. .+.. |...+.+++|+ |||+.|++++ ++.+.+|+
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~ 323 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQD 323 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEEC
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEc
Confidence 356789999999999999999999998544333 4433 34468999999 9999999887 78999999
Q ss_pred CCCCceeeeeeccCCCC-CeeEEEEecCCCEEEEEeCCc-EE-EEEccC---------CCCCceeEeCCCCCEEEEEcCC
Q psy16005 87 TVNKEHILKNEFHPIGG-PIKDIAWSPDNQRMISIVENG-AK-VSSLPI---------DYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~-~~-i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
+.+++.. .+..|.. .+..++|+ ||+.+++++++. +. +|++.. ...+..++|+|+++.+++++.+
T Consensus 324 ~~~~~~~---~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 324 VSGTYVL---KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp TTSSBEE---ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCCCceE---EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCC
Confidence 9877632 3455666 89999999 999999988743 23 455432 2345688999999999999999
Q ss_pred CeEEEEE--CCceeeee-cccCCCceEEEcCCCCEEEEEcCCC----------cEEEEEcCCCCCCCcccccCCcCeEEE
Q psy16005 155 SKISIVE--NGAKVSSL-PIDYEPSSISLDHEHGLVAVGGADS----------KVHIYELNNKSLSPKAELDHLGPVTDC 221 (248)
Q Consensus 155 ~~i~~~~--~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~----------~v~i~d~~~~~~~~~~~~~~~~~v~~~ 221 (248)
+.+++|| .++..... .+...+..++|+|||++|++++.++ .|++||+.+++. . ....|...+..+
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-~-~l~~~~~~~~~~ 477 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-F-AATTENSHDYAP 477 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-E-ECSCSSSBEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-E-EeeCCCcccCCc
Confidence 9999999 44554444 4556678999999999998887643 899999998763 2 233577788999
Q ss_pred EEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 222 SFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 222 ~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+|+|||++|++++.++...+|+..
T Consensus 478 ~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 478 AFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EECTTSCEEEEEESCCCCCEECSS
T ss_pred eEcCCCCEEEEEecccCCcCcchh
Confidence 999999999999888877777653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-23 Score=157.90 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=158.9
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecC-CCceeeeeecC-CcceEEEEECcCCcE--EEEEc-------------cCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIE-NPAISDIYTEH-SCAVNVAKYSPSGFY--IASGD-------------ISG 80 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~--l~~~~-------------~dg 80 (248)
..+..++|+|||++|++++.+.|.+|++. +++........ .+.+.+++|+|+|++ +++++ .+|
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 46778999999999888874499999997 77665433211 123556899999994 55654 689
Q ss_pred eEEEEECCC-Cceeeeeecc--CCCCCeeEEEEecCCCEEEEEeC--CcEEEEEcc-C--------------CCCCceeE
Q psy16005 81 KVRIWDTVN-KEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLP-I--------------DYEPSSIS 140 (248)
Q Consensus 81 ~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~-~--------------~~~~~~~~ 140 (248)
.+.+|++.. ++........ .+...+.+++|+|||++++++.. +.+.+|++. . ...+..++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 999999974 5432211111 24567899999999999887753 457888875 1 22356789
Q ss_pred eCCCCCEEEEEcC-CCeEEEEE----CCcee---eee---ccc----C-------CCceEE-EcCCCCEEEEEcCC-C--
Q psy16005 141 LDHEHGLVAVGGA-DSKISIVE----NGAKV---SSL---PID----Y-------EPSSIS-LDHEHGLVAVGGAD-S-- 194 (248)
Q Consensus 141 ~~~~~~~~~~~~~-~~~i~~~~----~~~~~---~~~---~~~----~-------~~~~~~-~s~~~~~l~~~~~d-~-- 194 (248)
|+|+++++++++. ++.+.+|+ .++.. ..+ +.. . .+..++ |+|||++|++++.+ +
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~ 279 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence 9999998877664 78999986 23332 112 111 1 367899 99999988877643 2
Q ss_pred ---cEEEEEcC-CCCCCCc--ccccCCcCeEEEEEcC---CCcEEEEEcCC-CeEEEEECCC
Q psy16005 195 ---KVHIYELN-NKSLSPK--AELDHLGPVTDCSFSP---SNEYLVASDAH-RKVVLYRVPD 246 (248)
Q Consensus 195 ---~v~i~d~~-~~~~~~~--~~~~~~~~v~~~~~s~---~~~~l~~~~~d-~~i~vw~~~~ 246 (248)
.|.+|++. +++.... ....+...+..++|+| ||++|++++.+ +.|.+|+++.
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 89999996 4543221 1112444567889999 89999998764 8999998754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=144.65 Aligned_cols=217 Identities=12% Similarity=0.101 Sum_probs=148.8
Q ss_pred CCCCEEEEeC-----CcEEEEEec--CCCceeeeeecCCcceEEEEECcCCcEEEEEccC----CeEEEEECCC--Ccee
Q psy16005 27 PKGKNFLYTN-----GNSVIIRNI--ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVN--KEHI 93 (248)
Q Consensus 27 ~~~~~l~~~~-----~~~v~v~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~~ 93 (248)
+...+++.|+ ++.|++|.+ .+++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3344555552 568888876 4455443322266677889999999999998875 7999998865 4432
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEccCCCC------------------------CceeEeCCCCCE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPIDYE------------------------PSSISLDHEHGL 147 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~------------------------~~~~~~~~~~~~ 147 (248)
.......+...+..+++ ++++|++++. +.+.+|++..... +..++++|+++.
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 22333334556777877 8888888763 3468999853221 145899999996
Q ss_pred EEE-EcCCCeEEEEE--CCc-------e-------eeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCc
Q psy16005 148 VAV-GGADSKISIVE--NGA-------K-------VSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 148 ~~~-~~~~~~i~~~~--~~~-------~-------~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~ 209 (248)
+++ ...++.+.+|+ ... . .........+..++|+|||+++++++ .++.|.+|++.+++....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 655 45588999997 211 1 12233455678999999999887776 589999999987654211
Q ss_pred c----cccCCcCeEEEEEcCCCcEEEEEcC--CCeEEEEECC
Q psy16005 210 A----ELDHLGPVTDCSFSPSNEYLVASDA--HRKVVLYRVP 245 (248)
Q Consensus 210 ~----~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~ 245 (248)
. ...+...+..++|+|||++|+++.. ++.|.+|+++
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 1 1123345789999999999877655 4899999985
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=153.49 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=116.3
Q ss_pred ccCCcEEEEeCCCCCEEE----EeC-CcEEEEEecCCC--------ce---eeeeecCCcceEEEEECcC-CcEEEEEcc
Q psy16005 16 QRGQPIVLGGDPKGKNFL----YTN-GNSVIIRNIENP--------AI---SDIYTEHSCAVNVAKYSPS-GFYIASGDI 78 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~----~~~-~~~v~v~~~~~~--------~~---~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 78 (248)
+.+.|.+++|+|+|++|+ +++ |+.|++||+.++ +. ...+.+|...|.+++|+|+ +++|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 456799999999999999 565 899999998754 11 3455679999999999997 899999999
Q ss_pred CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
||+|++||++++... ....+|...+.+++|+|+|++|+++ +.|+.|+
T Consensus 171 Dg~v~iwD~~~~~~~--~~~~~~~~~v~~v~wspdg~~lasg-------------------------------s~dg~v~ 217 (434)
T 2oit_A 171 DGSIAVLQVTETVKV--CATLPSTVAVTSVCWSPKGKQLAVG-------------------------------KQNGTVV 217 (434)
T ss_dssp TSCEEEEEESSSEEE--EEEECGGGCEEEEEECTTSSCEEEE-------------------------------ETTSCEE
T ss_pred CCeEEEEEcCCCcce--eeccCCCCceeEEEEcCCCCEEEEE-------------------------------cCCCcEE
Confidence 999999999988543 3445577889999999988777665 4455666
Q ss_pred EEECC-ceeeeecc--------cCCCceEEEcCCCCEEEEE-cCCC------cEEEEEcCCCC
Q psy16005 159 IVENG-AKVSSLPI--------DYEPSSISLDHEHGLVAVG-GADS------KVHIYELNNKS 205 (248)
Q Consensus 159 ~~~~~-~~~~~~~~--------~~~~~~~~~s~~~~~l~~~-~~d~------~v~i~d~~~~~ 205 (248)
+||.. +....+.. ...+.+++|++++.++++. +.+| .+++|++++.+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 218 QYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 66633 22222221 1256789999988777543 3343 38999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-19 Score=134.12 Aligned_cols=226 Identities=9% Similarity=0.125 Sum_probs=163.4
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee------cCCcceEEEEE-CcCCcEEEEEcc-CCeEEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT------EHSCAVNVAKY-SPSGFYIASGDI-SGKVRIWD 86 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~------~~~~~v~~~~~-s~~~~~l~~~~~-dg~i~iwd 86 (248)
+...+.+++++|+|+++++.. ++.|.+||.. ++....+. .+...+.++++ .++++++++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456789999999999877765 8899999976 55555443 23356889999 577777776643 78999999
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEccC-----------CCCCceeEeCCCCCEEEEEcCC
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLPI-----------DYEPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 154 (248)
.+++.+.... ..+...+..++++|+|+.+++... +.+.+|+... ...+..++++++++++++...+
T Consensus 107 -~~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 4555432221 223457899999999987666544 3456666321 1346789999999988888889
Q ss_pred CeEEEEE-CCceeeeeccc---CCCceEEEcCCCCEEEEEcCCC-cEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCc
Q psy16005 155 SKISIVE-NGAKVSSLPID---YEPSSISLDHEHGLVAVGGADS-KVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNE 228 (248)
Q Consensus 155 ~~i~~~~-~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~ 228 (248)
+.|++|+ .++.+..+... ..+..++++|+|+++++...++ .|.+||.. ++.+..+... ....+.+++++|+|+
T Consensus 185 ~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 185 HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE
T ss_pred CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCc
Confidence 9999999 55555555443 4578999999999888887776 99999964 4433333221 223478999999998
Q ss_pred EEEEEcCCCeEEEEECCC
Q psy16005 229 YLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 229 ~l~~~~~d~~i~vw~~~~ 246 (248)
++++ +.++.|++|++..
T Consensus 264 l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 264 VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEE-ETTTEEEEEECSC
T ss_pred EEEE-CCCCeEEEEEccc
Confidence 7776 5799999999865
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=147.97 Aligned_cols=188 Identities=7% Similarity=0.005 Sum_probs=140.7
Q ss_pred CcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCC------cceEEEEECcCCcEEEEEccC-----------
Q psy16005 19 QPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHS------CAVNVAKYSPSGFYIASGDIS----------- 79 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~d----------- 79 (248)
.+..++|+|+|+.++++ . ++.|.+||+.+++....+.... ..+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 57789999999876654 3 7899999999988877665322 237789999999999998865
Q ss_pred -CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC------------------------
Q psy16005 80 -GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY------------------------ 134 (248)
Q Consensus 80 -g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~------------------------ 134 (248)
+.|.+||+.+++.........+...+.+++|+|+|+ +++++. .+.+|+.....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC-cEEEEeCCCCceeccccccccCCccccCccceeee
Confidence 899999998855322222222345688999999999 555443 37777653211
Q ss_pred ------------------------------------------------------CCceeEeCC-CCCEEEEEcCCCeEEE
Q psy16005 135 ------------------------------------------------------EPSSISLDH-EHGLVAVGGADSKISI 159 (248)
Q Consensus 135 ------------------------------------------------------~~~~~~~~~-~~~~~~~~~~~~~i~~ 159 (248)
.+..++++| ++++++++ ++.|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAK 279 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence 112345568 99988887 889999
Q ss_pred EE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 160 VE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
|| .++.+..+.....+.+++|+|++++|++++.++.|.+||+++++.+..+
T Consensus 280 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 280 YDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 99 4566666766777899999999998888888999999999988765444
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-20 Score=143.42 Aligned_cols=208 Identities=12% Similarity=0.157 Sum_probs=143.5
Q ss_pred CcEEEEEecC--CCceee-eeecCCcceEEEEECcCCcEEEEEcc---CCeEEEEECCCCceeeeeeccCCCCCeeEEEE
Q psy16005 37 GNSVIIRNIE--NPAISD-IYTEHSCAVNVAKYSPSGFYIASGDI---SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 37 ~~~v~v~~~~--~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 110 (248)
++.+++|+++ +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++......+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 4567776654 455433 2234556678899999999 655544 68999999977664333343445678899999
Q ss_pred ecCCCEEEEEe-CCc-EEEEEccCCC----------------------CCceeEeCCCCCEEEEEcCCCeEEEEECC---
Q psy16005 111 SPDNQRMISIV-ENG-AKVSSLPIDY----------------------EPSSISLDHEHGLVAVGGADSKISIVENG--- 163 (248)
Q Consensus 111 ~~~~~~l~~~~-~~~-~~i~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 163 (248)
+|||++|++++ .++ +.+|++.... .+..++++|+++++++...++.+.+|+..
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 99999998887 434 6899875211 13468999999977777788999999932
Q ss_pred ceee--e--ecccCCCceEEEcCCCCEEEE-EcCCCcEEEEEcCC--CCCCCccc-ccC------CcCeEEEEEcCCCcE
Q psy16005 164 AKVS--S--LPIDYEPSSISLDHEHGLVAV-GGADSKVHIYELNN--KSLSPKAE-LDH------LGPVTDCSFSPSNEY 229 (248)
Q Consensus 164 ~~~~--~--~~~~~~~~~~~~s~~~~~l~~-~~~d~~v~i~d~~~--~~~~~~~~-~~~------~~~v~~~~~s~~~~~ 229 (248)
+... . ......+..++|+|||+++++ ...++.|.+|++.. ++...... ... ...+..++|+|||++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 2221 1 122335678999999996666 56688999999875 33211110 011 145889999999998
Q ss_pred EEE-EcCCCeEEEEECC
Q psy16005 230 LVA-SDAHRKVVLYRVP 245 (248)
Q Consensus 230 l~~-~~~d~~i~vw~~~ 245 (248)
|++ ...++.|.+|++.
T Consensus 254 l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEEEETTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEEEC
Confidence 854 5568999999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-19 Score=137.62 Aligned_cols=230 Identities=13% Similarity=0.059 Sum_probs=169.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-C------------------------cEEEEEecCCCceeeeee-cCCcceEEEEECcC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-G------------------------NSVIIRNIENPAISDIYT-EHSCAVNVAKYSPS 69 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~------------------------~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 69 (248)
..+.+.+++++|+|+++++.. + +.|.+||..+++....+. .+-.....++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 457899999999999988876 4 379999998888776554 33457889999999
Q ss_pred CcEEEEEccCCeEEEEECCCCc-eeeeeec-------cCCCCCeeEEEEec-CCCEEEEEe--CCcEEEEEccCC-----
Q psy16005 70 GFYIASGDISGKVRIWDTVNKE-HILKNEF-------HPIGGPIKDIAWSP-DNQRMISIV--ENGAKVSSLPID----- 133 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~l~~~~--~~~~~i~~~~~~----- 133 (248)
|+++++...++.|++||..... .+..... ..+-..+..++++| +++.+++.+ ...+.+|+....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~ 181 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQW 181 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEe
Confidence 9988888889999999986542 2211110 23344689999999 777777764 344566663210
Q ss_pred --------------CCCceeEeCCC-CCEEEEEcCCCeEEEEE-C-Cceeeeecc---cCCCceEEEcC------CCCEE
Q psy16005 134 --------------YEPSSISLDHE-HGLVAVGGADSKISIVE-N-GAKVSSLPI---DYEPSSISLDH------EHGLV 187 (248)
Q Consensus 134 --------------~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-~-~~~~~~~~~---~~~~~~~~~s~------~~~~l 187 (248)
..+..++++|+ +.++++...++.|++|+ . ++.+..+.. ...+..++++| +|+..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 12678999998 78888888899999999 3 777776642 34567888888 33322
Q ss_pred EEEcCCCcEEEEEcCCCCCCCccc--ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 188 AVGGADSKVHIYELNNKSLSPKAE--LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 188 ~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
++...+..|++||..+++.+..+. .++...+..++++|+|..+++...++.|++|++.
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 223345589999999988765442 2456678999999999888888889999999975
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=149.97 Aligned_cols=223 Identities=5% Similarity=-0.044 Sum_probs=150.2
Q ss_pred EEeCCCCCEEEEeC--Cc--EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 23 LGGDPKGKNFLYTN--GN--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 23 ~~~s~~~~~l~~~~--~~--~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.+|||||+.|++++ ++ .|++||+.+++.......+...+..+.|+||++.|+.++.++.|++||+.+++......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~- 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ- 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-
Confidence 78999999988875 44 59999999988877666666666577899999999999999999999999987543333
Q ss_pred cCCCCCeeEEE--EecCCCEEEEEe-----------------------CCcEEEEEccCC---------CCCceeEeCC-
Q psy16005 99 HPIGGPIKDIA--WSPDNQRMISIV-----------------------ENGAKVSSLPID---------YEPSSISLDH- 143 (248)
Q Consensus 99 ~~~~~~v~~~~--~~~~~~~l~~~~-----------------------~~~~~i~~~~~~---------~~~~~~~~~~- 143 (248)
.+...+.... ++|+++.++... ...+.+|++... ..+..+.|+|
T Consensus 120 -~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 120 -VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY 198 (388)
T ss_dssp -CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred -chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence 3334443333 489999887532 122455665422 2356788999
Q ss_pred CCCEEEEEcCC------CeEEEEE-CCceeeeecccC---CCceEEEcCCCCEEEEEcC-CC----cEEEEEcCCCCCCC
Q psy16005 144 EHGLVAVGGAD------SKISIVE-NGAKVSSLPIDY---EPSSISLDHEHGLVAVGGA-DS----KVHIYELNNKSLSP 208 (248)
Q Consensus 144 ~~~~~~~~~~~------~~i~~~~-~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~-d~----~v~i~d~~~~~~~~ 208 (248)
+++.++....+ ..|.+++ .+.....+.... .+..++|+|||+.|+..+. ++ .|++||+.+++...
T Consensus 199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ 278 (388)
T ss_dssp EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE
Confidence 99988876653 3788888 344444443322 3567899999997765443 22 39999999887532
Q ss_pred cccccC-C---cCeEEEEEcCCCcEEEEE---------cCCCeEEEEECCCC
Q psy16005 209 KAELDH-L---GPVTDCSFSPSNEYLVAS---------DAHRKVVLYRVPDF 247 (248)
Q Consensus 209 ~~~~~~-~---~~v~~~~~s~~~~~l~~~---------~~d~~i~vw~~~~~ 247 (248)
...... . .....+.|+|||+.|+.. ..+..|++||+.++
T Consensus 279 l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 279 LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 211111 0 001223799999988754 45678999999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=153.67 Aligned_cols=183 Identities=12% Similarity=0.037 Sum_probs=135.4
Q ss_pred CcceEEEEECcCCcEEEEEcc-CCeEEEEECCCCceeeeeeccCCC-CCeeEEEEecCCCEEEEEeC----CcEEEEEcc
Q psy16005 58 SCAVNVAKYSPSGFYIASGDI-SGKVRIWDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMISIVE----NGAKVSSLP 131 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----~~~~i~~~~ 131 (248)
..+|.+++|+|||+.||+++. ||+++||++.+++. ..+..+. ..+..++|+|| +.++++.. +...+|.++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 567999999999999999877 99999999866653 2344444 68999999999 77776664 334777665
Q ss_pred C--CC---------CCceeEeCCCCCE-EEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCC----
Q psy16005 132 I--DY---------EPSSISLDHEHGL-VAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD---- 193 (248)
Q Consensus 132 ~--~~---------~~~~~~~~~~~~~-~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---- 193 (248)
. .. .....+++|+++. +++...++.+.+|| .++......... .+++|||||++|++++.+
T Consensus 97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 4 21 2335577888753 33444445555998 444333333222 889999999999988766
Q ss_pred CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC--eEEEEECCCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR--KVVLYRVPDFE 248 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~vw~~~~~~ 248 (248)
+.|++||+.+++.. . ...|...+..++|||||++|+++..++ .|++||+++++
T Consensus 175 ~~i~~~d~~~g~~~-~-l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-V-FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEEEEEETTTCCCE-E-ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred eEEEEEcCCCCCce-E-eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 78999999988764 2 336788899999999999999888888 89999998764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=143.20 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=141.9
Q ss_pred CcEEEEeCCCCCEEEEe-------------CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYT-------------NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~-------------~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
.+.+++|+|+|++++++ .++.|.+||+.+++....+.. ...+.+++|+|++++|+++ ++.|.+|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 57789999999998887 368999999998888776654 4567889999999988887 6889999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-------------------------cEEEEEccCC-------
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-------------------------GAKVSSLPID------- 133 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------------------------~~~i~~~~~~------- 133 (248)
|+.+++.........+..+ +.|+|+++.++..+.. .+.+|++...
T Consensus 160 d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp ETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred ECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 9998875533322221122 3789998877655432 2355665432
Q ss_pred ----CCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 134 ----YEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
..+..++++|++++++++ ++.|.+|| .++.+..+.....+.+++|+|+|++|++++.++.|.+||+.+++.+
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 234568999999998888 79999999 4566667777778899999999999999999999999999998765
Q ss_pred Cccc
Q psy16005 208 PKAE 211 (248)
Q Consensus 208 ~~~~ 211 (248)
..+.
T Consensus 315 ~~~~ 318 (337)
T 1pby_B 315 GQVD 318 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=156.15 Aligned_cols=219 Identities=11% Similarity=0.037 Sum_probs=149.7
Q ss_pred CcEEEEeCCCCCEEEEeC----------CcEEEEEecCCCcee--eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTN----------GNSVIIRNIENPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~----------~~~v~v~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
.+.+++|||||++|++++ ++.|++||+.+++.. ..+ ...+.+++|||||+.|+++. ++.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 378999999999999875 389999999988763 222 25688999999999999885 78999999
Q ss_pred CCCCceeeeeeccCCCCCe-----------------eEEEEecCCCEEEEEeCC--------------------------
Q psy16005 87 TVNKEHILKNEFHPIGGPI-----------------KDIAWSPDNQRMISIVEN-------------------------- 123 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~~~~~~-------------------------- 123 (248)
+.+++... ....++...+ .+++|+|||++|++++.+
T Consensus 137 ~~~g~~~~-l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 137 RPGDPPFQ-ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp STTSCCEE-CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCCCCcEE-EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 98876432 1222222222 489999999999988743
Q ss_pred ---------cEEEEEccCCC------------------CCceeEeCCCCCEEEEEcC--C--CeEEEEE----CC--cee
Q psy16005 124 ---------GAKVSSLPIDY------------------EPSSISLDHEHGLVAVGGA--D--SKISIVE----NG--AKV 166 (248)
Q Consensus 124 ---------~~~i~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~--~~i~~~~----~~--~~~ 166 (248)
.+.+|++.... .+..++|+|+++++++... + ..|.+|| .. +..
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 34677765432 2367899999877766432 2 2477788 32 222
Q ss_pred eee-----cccCCCc-----eEEEcCCCCEEEE--EcCCC--cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 167 SSL-----PIDYEPS-----SISLDHEHGLVAV--GGADS--KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 167 ~~~-----~~~~~~~-----~~~~s~~~~~l~~--~~~d~--~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
..+ .+...+. .++|+|||+.++. +..+| .|++||+.+++. ..+. .+...+..+.++ +++.|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt-~~~~~v~~~~~~-d~~~i~~ 372 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQIT-SGKWEAINIFRV-TQDSLFY 372 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECS-CSSSCEEEEEEE-CSSEEEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eecc-cCceEEEEEEEE-eCCEEEE
Confidence 222 1233344 7899999995554 44555 577777776653 2222 455567887777 8877766
Q ss_pred EcCC-----CeEEEEECC
Q psy16005 233 SDAH-----RKVVLYRVP 245 (248)
Q Consensus 233 ~~~d-----~~i~vw~~~ 245 (248)
.+.+ +..++|.+.
T Consensus 373 ~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EESCGGGCTTCBEEEEEE
T ss_pred EEecCCCCCceEEEEEEe
Confidence 6554 788888764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-20 Score=140.27 Aligned_cols=219 Identities=9% Similarity=0.086 Sum_probs=146.1
Q ss_pred EEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC------CcceEEEEECcCCcEEEEEcc--CCeE
Q psy16005 22 VLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH------SCAVNVAKYSPSGFYIASGDI--SGKV 82 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--dg~i 82 (248)
.++|+|||+++++++ ++.|.+||..+++....+... ......++++|||++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 899999999998874 467999999998888776532 234567999999999998874 5799
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCC-CEEEEEeCCc-EEEEEccC----------------CCCCceeEeCCC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN-QRMISIVENG-AKVSSLPI----------------DYEPSSISLDHE 144 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~-~~i~~~~~----------------~~~~~~~~~~~~ 144 (248)
.+||+.+++.+... +.. .....+.+.|++ ..+++.+.++ +.++++.. ...+..+...++
T Consensus 134 ~v~d~~~~~~~~~~-i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDV-TAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEE-GGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEEC
T ss_pred EEEECCCCcEEEEE-ecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEeccc
Confidence 99999998754320 221 111123333433 2222222222 22233221 112222334566
Q ss_pred CCEEEEEcCCCeEEEEECC-ce---eeeecc-----------cCCCceEEEcCCCCEEEEEcC-----------CCcEEE
Q psy16005 145 HGLVAVGGADSKISIVENG-AK---VSSLPI-----------DYEPSSISLDHEHGLVAVGGA-----------DSKVHI 198 (248)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~-~~---~~~~~~-----------~~~~~~~~~s~~~~~l~~~~~-----------d~~v~i 198 (248)
+..++..+.++.+.++|.. .. ...+.. ......++++|+++.++++.. .+.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 7777777788999999942 11 111111 122334899999887777643 347999
Q ss_pred EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
||+.+++.+..+.. +. +.+++|+|||++|++++. +.|.+||..++
T Consensus 291 iD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 291 MDTKTKQRVARIPG-RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EETTTTEEEEEEEC-TT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EECCCCcEEEEEec-CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99999988766653 33 899999999999998887 99999999887
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-20 Score=143.48 Aligned_cols=224 Identities=10% Similarity=0.034 Sum_probs=148.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEE--ECcCCcEEEEE----------------
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAK--YSPSGFYIASG---------------- 76 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~---------------- 76 (248)
+...+....|+|||+.|+++. ++.+++||+.+++....+..+...+.... ++|++++++..
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchh
Confidence 333444678999999999887 77999999999987776666666554444 48999988742
Q ss_pred ------ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCC-------cEEEEEccCC---------
Q psy16005 77 ------DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVEN-------GAKVSSLPID--------- 133 (248)
Q Consensus 77 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~-------~~~i~~~~~~--------- 133 (248)
..+..|.+||+.+++.. .+..+...+..++|+| ||+.|+....+ .+.+++....
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGEST---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred hhhhccCCcceEEEEECCCCceE---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence 24468999999988643 2334456789999999 99999887754 2344443211
Q ss_pred --CCCceeEeCCCCCEEEEEcC-CC----eEEEEE--CCceeeeecccC------CCceEEEcCCCCEEEEE--------
Q psy16005 134 --YEPSSISLDHEHGLVAVGGA-DS----KISIVE--NGAKVSSLPIDY------EPSSISLDHEHGLVAVG-------- 190 (248)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~-~~----~i~~~~--~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~-------- 190 (248)
..+....|+|+|+.|+..+. ++ .|++|| .++......... .+...+|+|||+.|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 12345689999997755332 22 399999 333222111111 13445899999988754
Q ss_pred -cCCCcEEEEEcCCCCCCCcccccCCc-----------CeEEEEEcCCCcEEEEEc-CCCeEEEEEC
Q psy16005 191 -GADSKVHIYELNNKSLSPKAELDHLG-----------PVTDCSFSPSNEYLVASD-AHRKVVLYRV 244 (248)
Q Consensus 191 -~~d~~v~i~d~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~-~d~~i~vw~~ 244 (248)
..+..|++||+.+++... +. .+.. .+..++|+|||+.|+..+ .+|...||.+
T Consensus 316 ~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQHR-VA-RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -CCCCEEEEEETTTTEEEE-EE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCCCEEEEEeccCCceEE-ec-cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 445689999999876532 22 3433 578899999999887665 4666666644
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-18 Score=144.05 Aligned_cols=229 Identities=10% Similarity=-0.006 Sum_probs=157.3
Q ss_pred CCcEEEEeCCCCCEEEEeC--Cc----EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCe----------
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GN----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK---------- 81 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~----~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---------- 81 (248)
..+..++|||||++|+++. +| .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 3577899999999999874 22 8999999998876643222 23678999999999998887765
Q ss_pred ------EEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEEEeC------CcEEEEEccC------CC-CCc---
Q psy16005 82 ------VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMISIVE------NGAKVSSLPI------DY-EPS--- 137 (248)
Q Consensus 82 ------i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~~~~i~~~~~------~~-~~~--- 137 (248)
|++|++.+++.. .......+...+..+.|+|||++|+..+. ..+.+|++.. +. ...
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 999999887632 22233334556789999999999988763 2356777654 21 122
Q ss_pred ------eeEeCCCCCEEEEEcCC----CeEEEEECCce-----eeeecccC--CCceEEEcCCCCEEEEEcCCCc--EEE
Q psy16005 138 ------SISLDHEHGLVAVGGAD----SKISIVENGAK-----VSSLPIDY--EPSSISLDHEHGLVAVGGADSK--VHI 198 (248)
Q Consensus 138 ------~~~~~~~~~~~~~~~~~----~~i~~~~~~~~-----~~~~~~~~--~~~~~~~s~~~~~l~~~~~d~~--v~i 198 (248)
...+++++..++..+.. ..|..|+.... ...+.... .+..++|++++.++++...++. |++
T Consensus 284 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 284 DNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 22467788877665543 36888983221 22223322 3567888877778888888874 666
Q ss_pred EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE----cCCCeEEEEECCCCC
Q psy16005 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
|++.+++....+. .+.+.+..+.++|+++.++.. ...+.+++||+.+++
T Consensus 364 ~~~~~g~~~~~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 364 HDLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCCCCEEEecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7776666443433 356778899999999766533 235799999998764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-17 Score=124.77 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=152.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC----CeEEEEECCCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNK 90 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~ 90 (248)
+...+.+++|+|+|++++++. ++.|++||..+++.......+...+.+++++|+++++++...+ +.|.+||..++
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 345578999999999777765 7899999998887665444566789999999999988877666 68999999877
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCC-----------CCCceeEeCCCCCEE-EEEcC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPID-----------YEPSSISLDHEHGLV-AVGGA 153 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~ 153 (248)
..........+...+..++++|+|+.+++...+ ...+|.+... ..+..++++|+++.+ ++...
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 643111112234578999999999877766532 2355554322 135678899999855 45566
Q ss_pred CCeEEEEEC---Cceeeee--------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-----CCcC
Q psy16005 154 DSKISIVEN---GAKVSSL--------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-----HLGP 217 (248)
Q Consensus 154 ~~~i~~~~~---~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----~~~~ 217 (248)
++.|.+|+. +.....+ .....+..++++++|+++++...++.|.+||.. ++....+... |...
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~ 281 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLR 281 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCB
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccC
Confidence 789999983 2322211 111356789999999988777778899999984 4433333211 1126
Q ss_pred eEEEEEcCCCcEEEEEcCC
Q psy16005 218 VTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d 236 (248)
+.+++|+||++.|+.++.+
T Consensus 282 ~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 282 STHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CCEEEECTTSCEEEEEEEC
T ss_pred cceEEECCCCCEEEEEeCc
Confidence 8999999998777665544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-17 Score=122.81 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=156.1
Q ss_pred CCCEEEEeC-CcEEEEEecCCCceeeeeecCC-cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCe
Q psy16005 28 KGKNFLYTN-GNSVIIRNIENPAISDIYTEHS-CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI 105 (248)
Q Consensus 28 ~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 105 (248)
.+++|++++ ++.|++||.++++.+..+..+. ..+.++.++|+|++++ +.++.|..||. +++.+...... ....+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~-~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP-AGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-TTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-CCccc
Confidence 356777776 9999999998999998887765 4688999999999888 34778999999 78766544432 23468
Q ss_pred eEEEEecCCCEEEEEeC-Cc---------EEEEEccCC-------CCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceee
Q psy16005 106 KDIAWSPDNQRMISIVE-NG---------AKVSSLPID-------YEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVS 167 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~-~~---------~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~ 167 (248)
.++.+.++|+.+++.+. ++ ..+|.+... ..+..+...++++++++...++.|..|| .++.+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 88999999999998776 22 223433321 1344567789999999999999999999 788888
Q ss_pred eecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-----CCcCeEEEEEcCCCcEEEEE
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-----HLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 233 (248)
.+.....+..+...++|..++++..++.|..+|..+++.+-..... ....+..+...++|..+++.
T Consensus 160 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 160 SVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 8887777888899999999999888889999999988875544311 12337888899999988776
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-18 Score=132.08 Aligned_cols=212 Identities=13% Similarity=0.157 Sum_probs=146.1
Q ss_pred CCcEEEEeCCCCCEEEEeC--C--c--EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC------------
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--G--N--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS------------ 79 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~--~--~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------ 79 (248)
..+..++|||||+.|++.+ + + .|++|++.+++....... .. +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 4577899999999998875 2 3 488889888776654433 34 9999999999998887642
Q ss_pred ---------------CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC--------cEEEEEccCCCCC
Q psy16005 80 ---------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN--------GAKVSSLPIDYEP 136 (248)
Q Consensus 80 ---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--------~~~i~~~~~~~~~ 136 (248)
..|.+||+.+++.+. .+.. . .+..++|+||| .++++..+ ...+|.++ ....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~--~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~ 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIE--EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKE 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEE--EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEe--eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCce
Confidence 579999998877522 2222 2 68899999999 76666543 34666665 2221
Q ss_pred -------ceeEeCCCCCEEEEEcCC--------CeEEEEECCceeeeec-c-cCCCce-EEEcCCCCEEEEEcCCCcEEE
Q psy16005 137 -------SSISLDHEHGLVAVGGAD--------SKISIVENGAKVSSLP-I-DYEPSS-ISLDHEHGLVAVGGADSKVHI 198 (248)
Q Consensus 137 -------~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~-~-~~~~~~-~~~s~~~~~l~~~~~d~~v~i 198 (248)
....++|+|+.++..+.+ ..|.+|| ......+. . ...+.. +.|+ ++ ++++++.++.++|
T Consensus 211 ~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 211 EKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp EEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred EEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 122348899988776643 4688888 33333332 2 334564 8899 88 8889999999999
Q ss_pred EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE-EEEECC
Q psy16005 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV-VLYRVP 245 (248)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i-~vw~~~ 245 (248)
| +.+++. ... ..+...|.+++|+| ..+++++.++.. .+|.++
T Consensus 288 ~-~~~g~~-~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEI-KPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSE-EEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCce-EEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 875443 222 24577899999999 667777666554 677653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=144.62 Aligned_cols=213 Identities=8% Similarity=-0.039 Sum_probs=145.1
Q ss_pred cEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 20 PIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
+..++|||||++|++.. +..|++||+.+++.......+......+.|+|||+.|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 67789999999988764 24799999988876554433332233478999999999999999999999988774322
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEE-----cCCCeEEEEE--CCceee
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVG-----GADSKISIVE--NGAKVS 167 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~--~~~~~~ 167 (248)
.. .+.. |+++|+.|+....+.. .+|. ....++|+++.++.. ..+..|++|| .++...
T Consensus 118 ~~--~~~~------~~~~g~~l~~~~~~~~~~~~~-------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 118 YT--VDEE------WKGYGTWVANSDCTKLVGIEI-------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp EE--CCTT------EEEEEEEEECTTSSEEEEEEE-------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE
T ss_pred Ee--cccc------cCCCCCEEEeccCCccccccc-------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe
Confidence 22 2222 7778877776654443 3332 134577888876654 3566788898 344444
Q ss_pred eecccCCCceEEEcC-CCCEEEEEcCC------CcEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcEEEEEcCC---
Q psy16005 168 SLPIDYEPSSISLDH-EHGLVAVGGAD------SKVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEYLVASDAH--- 236 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~-~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--- 236 (248)
.......+..+.|+| +++.|+..+.+ ..|.+||+.+++...... .. ...+..++|+|||++|+.++.+
T Consensus 183 ~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 183 IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCCC
Confidence 444455678899999 88877765543 368889987665422221 11 3357889999999988776543
Q ss_pred --CeEEEEECCCCC
Q psy16005 237 --RKVVLYRVPDFE 248 (248)
Q Consensus 237 --~~i~vw~~~~~~ 248 (248)
+.|++||+.+++
T Consensus 262 ~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 262 TDRVIYKANPETLE 275 (396)
T ss_dssp CCEEEEEECTTTCC
T ss_pred ccceEEEEECCCCC
Confidence 459999998764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=143.06 Aligned_cols=227 Identities=9% Similarity=0.015 Sum_probs=155.4
Q ss_pred cccCCcEEEEeCCCCCEEEEe--C-CcEEEEEecCCCceeeeeecCCcceE---------EEEEC--cCCcE-EEEEcc-
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYT--N-GNSVIIRNIENPAISDIYTEHSCAVN---------VAKYS--PSGFY-IASGDI- 78 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~--~-~~~v~v~~~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~~~~- 78 (248)
.|...+..++|++++-+++.. + ++...||....+...+.+..+...+. ...|+ |||+. |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 467789999999887666666 3 67888998654445555666665555 56565 99988 776543
Q ss_pred CCeEEEEECC--C-CceeeeeeccC-----CCCCeeEEEEecCCCEEEEEeCC-----------cEEEEEccC------C
Q psy16005 79 SGKVRIWDTV--N-KEHILKNEFHP-----IGGPIKDIAWSPDNQRMISIVEN-----------GAKVSSLPI------D 133 (248)
Q Consensus 79 dg~i~iwd~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~-----------~~~i~~~~~------~ 133 (248)
+..|.++++. + ++. ..+.. |...+..++|+|||+.|++++.+ .+.+|++.. .
T Consensus 101 ~~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp TCCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred CCeEEEEcCCCCCCCCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 5677777776 3 432 23333 56678899999999999988754 356777655 1
Q ss_pred C----------CCceeEeCCCCCEEEEEcCC--------CeEEEEECC--c---eeeeec-c-cCCCceEEEcCCCCEEE
Q psy16005 134 Y----------EPSSISLDHEHGLVAVGGAD--------SKISIVENG--A---KVSSLP-I-DYEPSSISLDHEHGLVA 188 (248)
Q Consensus 134 ~----------~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~--~---~~~~~~-~-~~~~~~~~~s~~~~~l~ 188 (248)
. ....+.|+|||+.|+..+.+ ..|++||.. . ....+. . ...+..++|+|||++++
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~ 257 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV 257 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence 1 12346799999999877644 378999832 2 333332 2 45678899999999888
Q ss_pred EEcCCC--cEEEEEcCCCCCCCcccccCCcC--------eEEEEEcCCCcEEEEEcCCCeEEEE--ECCC
Q psy16005 189 VGGADS--KVHIYELNNKSLSPKAELDHLGP--------VTDCSFSPSNEYLVASDAHRKVVLY--RVPD 246 (248)
Q Consensus 189 ~~~~d~--~v~i~d~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~d~~i~vw--~~~~ 246 (248)
++..++ .|++||+.+++...... .+... +..++|+|+++++++++. +.++|| |+.+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp EECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred EECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence 888888 56666665665422221 22221 567899999999999988 999999 5444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-17 Score=125.41 Aligned_cols=224 Identities=12% Similarity=-0.001 Sum_probs=157.1
Q ss_pred ccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
......+++|+|+|+ +++++. ++.|+.|+..++ ...+..+...+.+++++|+|+++++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 345577899999998 555554 889999998876 5556667778999999999998888777889999999777643
Q ss_pred eeeec-c-CCCCCeeEEEEecCCCEEEEEeC----------------CcEEEEEccCC----------CCCceeEeCCCC
Q psy16005 94 LKNEF-H-PIGGPIKDIAWSPDNQRMISIVE----------------NGAKVSSLPID----------YEPSSISLDHEH 145 (248)
Q Consensus 94 ~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~----------------~~~~i~~~~~~----------~~~~~~~~~~~~ 145 (248)
..... . .....+..++++|+|+.+++... ....+|.+... ..+..++++|++
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTS
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCC
Confidence 21111 1 11235678999999998876321 12255555432 235678999999
Q ss_pred CEEEEEcCCCeEEEEEC---Cce---eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe
Q psy16005 146 GLVAVGGADSKISIVEN---GAK---VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPV 218 (248)
Q Consensus 146 ~~~~~~~~~~~i~~~~~---~~~---~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v 218 (248)
+.+++...++.|.+|+. +.. ...+. ....+..++++++|+++++. ++.|.+||.. ++....+. .+.. +
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~-~~~~-~ 258 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL-TPQT-T 258 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE-CSSC-C
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE-CCCC-c
Confidence 98877778899999983 332 22221 23456789999999866665 7889999987 44433333 3444 8
Q ss_pred EEEEE-cCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 219 TDCSF-SPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 219 ~~~~~-s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.+++| +|+++.|++++.+ .+.-++.++.
T Consensus 259 ~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred eeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 99999 6899988888765 4445555543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-17 Score=120.16 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=156.9
Q ss_pred CcEEEEeCCCCCEEE-Ee-CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 19 QPIVLGGDPKGKNFL-YT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~-~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
.+.+++++|+|++++ +. .++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||....... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 788999999999766 43 378999999766543322223335678899999999666655 889999998765432 11
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECC-c
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVENG-A 164 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 164 (248)
. ......+..++++++|+.+++... +.+.+++... ...+..++++++++++++...++.|..|+.. .
T Consensus 103 ~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 103 P-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp C-CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred e-cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 1 122356899999999986665543 3455554321 1246789999999988887788899999933 2
Q ss_pred eeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 165 KVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 165 ~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
...... ....+..++++++|.++++...++.|.+||..+..... ....+...+.+++++|+|+.+++...++.|+++
T Consensus 182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 222221 12457889999999877777778899999987654322 222334568999999999988888889999999
Q ss_pred ECCCC
Q psy16005 243 RVPDF 247 (248)
Q Consensus 243 ~~~~~ 247 (248)
++...
T Consensus 261 ~~~~~ 265 (270)
T 1rwi_B 261 TSLEH 265 (270)
T ss_dssp CCCGG
T ss_pred cCCCc
Confidence 98653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-18 Score=129.23 Aligned_cols=209 Identities=18% Similarity=0.116 Sum_probs=141.9
Q ss_pred CCcEEEEeCCCCCEEEEeC----------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---C--eE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN----------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---G--KV 82 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g--~i 82 (248)
..+...++ ||+.+++.. ++.|++|++.+++... + ..+..++|||||+.|+..+.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45667778 999888752 4679999998876543 3 567899999999999887654 3 47
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC----------------------------cEEEEEccCCC
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN----------------------------GAKVSSLPIDY 134 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------------------------~~~i~~~~~~~ 134 (248)
.+||+.+++...... +.. +..++|+|||+.|+.++.+ .+.+|++....
T Consensus 88 ~~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 88 WVADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred EEEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 888888776432222 223 8999999999999888632 23555554322
Q ss_pred --------CCceeEeCCCCCEEEEEcCC---------CeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCC----
Q psy16005 135 --------EPSSISLDHEHGLVAVGGAD---------SKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD---- 193 (248)
Q Consensus 135 --------~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---- 193 (248)
.+..+.|+|++ +++++..+ ..|..++.+ ....+...... ..++|||+.|+.++.+
T Consensus 164 ~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~~~~--~~~spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 164 VIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFEKVSF--YAVDSDGERILLYGKPEKKY 239 (347)
T ss_dssp EEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEEEESE--EEEEECSSCEEEEECCSSSC
T ss_pred EEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEEeccCcce--eeECCCCCEEEEEEccccCC
Confidence 35577899999 77776543 246667733 33333322222 3349999988877643
Q ss_pred ----CcEEEEEcCCCCCCCcccccCCcCeEE-EEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 194 ----SKVHIYELNNKSLSPKAELDHLGPVTD-CSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 194 ----~~v~i~d~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
..|++|| +++. ..+...+...+.. +.|+ |+ ++++++.++.++|| +.++
T Consensus 240 ~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 240 MSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp CCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 3677887 4443 2233346677886 9999 88 88888999999999 7643
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-18 Score=130.52 Aligned_cols=186 Identities=12% Similarity=0.138 Sum_probs=132.6
Q ss_pred CcEEEEeCCCCCE--EEEe--------------CCcEEEEEecC-CCceeeeee----cCCcceEEEEECcCCcEEEEEc
Q psy16005 19 QPIVLGGDPKGKN--FLYT--------------NGNSVIIRNIE-NPAISDIYT----EHSCAVNVAKYSPSGFYIASGD 77 (248)
Q Consensus 19 ~v~~~~~s~~~~~--l~~~--------------~~~~v~v~~~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 77 (248)
.+.+++|+|||++ ++++ .++.+.+|++. .++....+. .+...+.+++|+|||++|++++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 3556899999994 4444 47789999997 465544333 2456789999999999888765
Q ss_pred -cCCeEEEEECC-CCceeeeeecc--CCCCCeeEEEEecCCCEEEEEeC--CcEEEEEccC--C----------------
Q psy16005 78 -ISGKVRIWDTV-NKEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLPI--D---------------- 133 (248)
Q Consensus 78 -~dg~i~iwd~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~~--~---------------- 133 (248)
.++.|++||+. +++......+. .+...+..++|+|||++++++.. +.+.+|+++. .
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 46799999998 66643222232 24567899999999999988874 3457776531 0
Q ss_pred ---C-------CCceeE-eCCCCCEEEEEcCC-C-----eEEEEEC---Cceee---eec-ccCCCceEEEcC---CCCE
Q psy16005 134 ---Y-------EPSSIS-LDHEHGLVAVGGAD-S-----KISIVEN---GAKVS---SLP-IDYEPSSISLDH---EHGL 186 (248)
Q Consensus 134 ---~-------~~~~~~-~~~~~~~~~~~~~~-~-----~i~~~~~---~~~~~---~~~-~~~~~~~~~~s~---~~~~ 186 (248)
. .+..++ ++|++++++++..+ . .|.+|+. ++... ... ....+..++|+| ||++
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence 0 245688 99999988776543 2 8999982 33322 122 334578899999 8999
Q ss_pred EEEEcCC-CcEEEEEcCCC
Q psy16005 187 VAVGGAD-SKVHIYELNNK 204 (248)
Q Consensus 187 l~~~~~d-~~v~i~d~~~~ 204 (248)
|++++.+ +.|.+|++...
T Consensus 324 l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 324 MAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEECSSSCEEEEEEEETT
T ss_pred EEEEEcCCCeEEEEEEchh
Confidence 9999864 89999999765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-18 Score=141.31 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=146.4
Q ss_pred EEEe--CCCCCE-EEEeC--CcEEEEEecC--C-Cceeeeeec-----CCcceEEEEECcCCcEEEEEccC---------
Q psy16005 22 VLGG--DPKGKN-FLYTN--GNSVIIRNIE--N-PAISDIYTE-----HSCAVNVAKYSPSGFYIASGDIS--------- 79 (248)
Q Consensus 22 ~~~~--s~~~~~-l~~~~--~~~v~v~~~~--~-~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d--------- 79 (248)
...| ||||+. |++++ +..|+++++. . ++ ...+.. |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 3444 499998 88776 4677777765 3 43 344444 66788999999999999988876
Q ss_pred -CeEEEEECCC------Cceeeeeecc-CCCCCeeEEEEecCCCEEEEEeCC---------cEEEEEccC-C--------
Q psy16005 80 -GKVRIWDTVN------KEHILKNEFH-PIGGPIKDIAWSPDNQRMISIVEN---------GAKVSSLPI-D-------- 133 (248)
Q Consensus 80 -g~i~iwd~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~---------~~~i~~~~~-~-------- 133 (248)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ .+.+|++.. .
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce---eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 5899999987 442 2333 455678889999999999887633 246666652 2
Q ss_pred -----CCCceeEeCCCCCEEEEEcCCC--eEEEEE--CCceeeeecccCC---------CceEEEcCCCCEEEEEcCCCc
Q psy16005 134 -----YEPSSISLDHEHGLVAVGGADS--KISIVE--NGAKVSSLPIDYE---------PSSISLDHEHGLVAVGGADSK 195 (248)
Q Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~--~i~~~~--~~~~~~~~~~~~~---------~~~~~~s~~~~~l~~~~~d~~ 195 (248)
..+..+.|+|+|++++++..++ .|..|+ .++.......... +..++++|+++++++++. +.
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 2345678999999888888888 566666 3333322222211 457889999999999998 99
Q ss_pred EEEE--EcCCCCCCCcccccCCcCeEEE-EEcCCCcEEEEEcCCC--eEEEEECCCCC
Q psy16005 196 VHIY--ELNNKSLSPKAELDHLGPVTDC-SFSPSNEYLVASDAHR--KVVLYRVPDFE 248 (248)
Q Consensus 196 v~i~--d~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~--~i~vw~~~~~~ 248 (248)
++|| |+.+++. ..+ ..+...+..+ +++++.-++++++.+. .|.++|+.+++
T Consensus 316 ~~l~~~d~~~~~~-~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 316 AVLGILDPESGEL-VDA-AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CEEEEEETTTTEE-EEC-CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred cEEEEEECCCCcE-EEe-cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8998 5555543 222 2466667766 4443333334445454 45566665653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=134.96 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=144.0
Q ss_pred EEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEE-------------------EEECcCCcEEEEE-----
Q psy16005 22 VLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNV-------------------AKYSPSGFYIASG----- 76 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~----- 76 (248)
.+.|+|||+.|+++. ++.|++|++.+++.......+...... +.|+|+++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 378999999998775 778999999988766655544432222 3567777766654
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec-CCCEEEEEeCC-------cEEEEEccCCC-----------CCc
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP-DNQRMISIVEN-------GAKVSSLPIDY-----------EPS 137 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~-------~~~i~~~~~~~-----------~~~ 137 (248)
..+..|.+||+.+++... +..+...+..+.|+| +++.|+..+.+ .+.++++.... .+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEV---IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT 241 (396)
T ss_dssp CCCEEEEEEETTTCCEEE---EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred CCcceEEEEECCCCcEEe---eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence 356689999998877432 223456789999999 88878777643 24555543211 234
Q ss_pred eeEeCCCCCEEEEEcCC-----CeEEEEEC--CceeeeecccCCCceEEEcC-CCCEEEEEc----------------CC
Q psy16005 138 SISLDHEHGLVAVGGAD-----SKISIVEN--GAKVSSLPIDYEPSSISLDH-EHGLVAVGG----------------AD 193 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~-----~~i~~~~~--~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~----------------~d 193 (248)
.+.|+|+++.++..+.+ +.|++||. ++........ ... +.|+| ||+++++++ .+
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 56899999977766433 44999993 3322222122 122 88999 999888754 34
Q ss_pred CcEEEEEcCCCCCCCcccccCCc-----------CeEEEEEcCCCcEEEEEcC-CCe--EEEEECCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLG-----------PVTDCSFSPSNEYLVASDA-HRK--VVLYRVPDF 247 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~-d~~--i~vw~~~~~ 247 (248)
..|++||+.+++.. .+. .+.. .+..++|+|||+.|+.++. ++. |.+.++.++
T Consensus 320 ~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp CEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred CcEEEEecccCceE-Ecc-CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 68999999887753 222 3333 2567899999998877654 454 444455544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-16 Score=119.61 Aligned_cols=223 Identities=10% Similarity=0.048 Sum_probs=154.9
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
.+..+.+.. ++.+++.. ++.|.++|..+++.+..+.. ......++++++++.+++...++.|.+||..+++......
T Consensus 45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 456777743 33444444 78999999999999888753 4568899999998655555488999999999887543333
Q ss_pred ccC---CCCCeeEEEEecCCCEEEEEe---CCcEEEEEcc---------CCCCCceeEeCCCCCEEEEEcCC--------
Q psy16005 98 FHP---IGGPIKDIAWSPDNQRMISIV---ENGAKVSSLP---------IDYEPSSISLDHEHGLVAVGGAD-------- 154 (248)
Q Consensus 98 ~~~---~~~~v~~~~~~~~~~~l~~~~---~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-------- 154 (248)
... .......+++ . +..++++. .+.+.+++.. ....+..+.+++++++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 321 0114566777 3 44555544 3445666653 34557788999999988777655
Q ss_pred --CeEEEEE--CCceeeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCC-
Q psy16005 155 --SKISIVE--NGAKVSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPS- 226 (248)
Q Consensus 155 --~~i~~~~--~~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~- 226 (248)
+.|.++| +++....+.. ...+..++++|+++.|+++.. .|.+||..+++........ .......++++|+
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~ 278 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN 278 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence 7899999 3455555554 346899999999999888765 8999999988764322212 2467899999995
Q ss_pred CcEEEEE----cCCCeEEEEECCCCC
Q psy16005 227 NEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 227 ~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
+..+++. ..++.|.+||.+ ++
T Consensus 279 g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 279 GEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CeEEEEcccccccCCEEEEECCC-CC
Confidence 5555555 567999999986 53
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=142.43 Aligned_cols=230 Identities=10% Similarity=0.004 Sum_probs=151.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCcee-eeeecCCcceEEEEECcCCcEEEEEccCCe-------
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSPSGFYIASGDISGK------- 81 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~------- 81 (248)
|...+.+++|||||++|+.+. +..|++||+.+++.. ..... ......++|+|||+.|+.++.+..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 444688999999999999652 358999999998865 21111 111267899999999999888765
Q ss_pred ------EEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEEEeCCc---EEEEEccCCC-C----------Ccee
Q psy16005 82 ------VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMISIVENG---AKVSSLPIDY-E----------PSSI 139 (248)
Q Consensus 82 ------i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~i~~~~~~~-~----------~~~~ 139 (248)
|++|++.+++.. .......+...+..+.|+|||++|+..+.++ ..+|.++... . ....
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 277 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV 277 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE
Confidence 999999887632 2234444556788999999999988776433 3555543321 1 1222
Q ss_pred EeCCCCCEEEEEc---CCCeEEEEEC--Cce---eeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCCC
Q psy16005 140 SLDHEHGLVAVGG---ADSKISIVEN--GAK---VSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELN-NKSLSP 208 (248)
Q Consensus 140 ~~~~~~~~~~~~~---~~~~i~~~~~--~~~---~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~~~~ 208 (248)
.+ +++.+++... .++.|..|+. +.. ...+.. ...+..++++ ++.++++...|+..+||.+. +++...
T Consensus 278 ~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 278 HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR 355 (695)
T ss_dssp EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence 33 4555444443 2578999983 221 222332 2235667777 66788888889887777665 333323
Q ss_pred cccccCCcCeEEEEEcCCCcEEEEE----cCCCeEEEEECCCCC
Q psy16005 209 KAELDHLGPVTDCSFSPSNEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 209 ~~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
.+.....+.+..++++|+++.++.. ...+.|++||+.+++
T Consensus 356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3332336678888999999877633 335789999998764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-17 Score=134.95 Aligned_cols=231 Identities=11% Similarity=0.086 Sum_probs=145.0
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee-cCCcce-----------------EEEEECcCCcEEEEEc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-EHSCAV-----------------NVAKYSPSGFYIASGD 77 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~-~~~~~v-----------------~~~~~s~~~~~l~~~~ 77 (248)
+.+.+...+|||||+.||++.++.|++|++.+++..+... ++...+ .++.|||||+.||.++
T Consensus 110 ~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 110 IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 4567899999999999999999999999998877554322 222222 3489999999999875
Q ss_pred cCC------------------------------------eEEEEECCC---Cceeeeeecc------CCCCCeeEEEEec
Q psy16005 78 ISG------------------------------------KVRIWDTVN---KEHILKNEFH------PIGGPIKDIAWSP 112 (248)
Q Consensus 78 ~dg------------------------------------~i~iwd~~~---~~~~~~~~~~------~~~~~v~~~~~~~ 112 (248)
.|. +|++||+.+ ++......+. ++...+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 321 588899988 6321112222 3677899999999
Q ss_pred CCCEEEEEeCC-----cEEEEEccCCC------------------C-----CceeEeCCCCCEEE-EEc-CCC--eEEEE
Q psy16005 113 DNQRMISIVEN-----GAKVSSLPIDY------------------E-----PSSISLDHEHGLVA-VGG-ADS--KISIV 160 (248)
Q Consensus 113 ~~~~l~~~~~~-----~~~i~~~~~~~------------------~-----~~~~~~~~~~~~~~-~~~-~~~--~i~~~ 160 (248)
||+.++..... .+.+|++.... . .....|+|+|+.++ ..+ .+| .|++|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 99977665422 25677765432 0 22678999999776 554 343 57778
Q ss_pred E-CCceeeeec-ccCCCceEEEcCCCCEEE-EEcC----CC--cEEEEEcCCCCCCCccc---ccCCcCeEEEEEcCCCc
Q psy16005 161 E-NGAKVSSLP-IDYEPSSISLDHEHGLVA-VGGA----DS--KVHIYELNNKSLSPKAE---LDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 161 ~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~-~~~~----d~--~v~i~d~~~~~~~~~~~---~~~~~~v~~~~~s~~~~ 228 (248)
+ .+.....+. ....+..+. .+|++.|+ +++. .+ .|+..++..+.....+. .+.......+.|||+++
T Consensus 350 ~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~ 428 (740)
T 4a5s_A 350 QIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAK 428 (740)
T ss_dssp ETTCSSCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred ECCCCceEecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCC
Confidence 8 333333333 344444433 24466554 4443 23 34444554433211111 12345688999999999
Q ss_pred EEEEEcCC---CeEEEEECCCC
Q psy16005 229 YLVASDAH---RKVVLYRVPDF 247 (248)
Q Consensus 229 ~l~~~~~d---~~i~vw~~~~~ 247 (248)
+++..... ..+.+++..++
T Consensus 429 ~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 429 YYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEEEEECSBSSCEEEEEETTTT
T ss_pred EEEEEeCCCCCCEEEEEECCCC
Confidence 87655332 46777777654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-17 Score=124.58 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=157.4
Q ss_pred CCcEEEEeCCCCCEEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (248)
..+.+++|+|++..++.. .++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-- 80 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-- 80 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE--
Confidence 457788999998777665 47788888 344555566676778999999999988888889999999998876432
Q ss_pred eccCCCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCC------------CCCceeEeCCCCCEEEEEcC------
Q psy16005 97 EFHPIGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPID------------YEPSSISLDHEHGLVAVGGA------ 153 (248)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~------ 153 (248)
....+...+.+++++|+|+.+++...+ ++.+|+.... ..+..+.++|+++++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 222345789999999999887777655 5677764321 23567889999988877654
Q ss_pred CCeEEEEEC-Cceeeee-cccCCCceEEEcCCCCEEEE-EcCCCcEEEEEcCC-CCCCCcc----c--ccCCcCeEEEEE
Q psy16005 154 DSKISIVEN-GAKVSSL-PIDYEPSSISLDHEHGLVAV-GGADSKVHIYELNN-KSLSPKA----E--LDHLGPVTDCSF 223 (248)
Q Consensus 154 ~~~i~~~~~-~~~~~~~-~~~~~~~~~~~s~~~~~l~~-~~~d~~v~i~d~~~-~~~~~~~----~--~~~~~~v~~~~~ 223 (248)
.+.|..++. +.....+ .....+..++++|+++.+++ ...++.|.+||+.+ +...... . ......+..+++
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 240 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 240 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred CceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE
Confidence 356777773 2223222 22345688999999986654 45678999999964 3321110 0 011136788999
Q ss_pred cCCCcEEEEEcCCCeEEEEECC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+++|+++++...++.|.+||.+
T Consensus 241 d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 241 DSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp BTTCCEEEEEETTTEEEEECTT
T ss_pred CCCCCEEEEEcCCCEEEEECCC
Confidence 9999988887778899999874
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-15 Score=113.96 Aligned_cols=227 Identities=8% Similarity=0.040 Sum_probs=154.7
Q ss_pred cCCcEEEEeCCCCCEEEE-------e-CCcEEEEEecCCCceeeeee----cCCcceEEEEECcC-CcEEEEEccCCeEE
Q psy16005 17 RGQPIVLGGDPKGKNFLY-------T-NGNSVIIRNIENPAISDIYT----EHSCAVNVAKYSPS-GFYIASGDISGKVR 83 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~-------~-~~~~v~v~~~~~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~~dg~i~ 83 (248)
...+.+++|+++|+++++ . .++.|.+||..+++...... ++...+.+++++++ ++++++.. .+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 346789999999988877 3 37899999988777543221 14467899999999 77555544 44799
Q ss_pred EEECCCCceeee-eecc--CCCCCeeEEEEecCCCEEEEEeCCc--------------EEEEEccCC----------CCC
Q psy16005 84 IWDTVNKEHILK-NEFH--PIGGPIKDIAWSPDNQRMISIVENG--------------AKVSSLPID----------YEP 136 (248)
Q Consensus 84 iwd~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~--------------~~i~~~~~~----------~~~ 136 (248)
+||.. ++.... .... .....+.+++++++|+.+++...++ ..+|.+... ..+
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~ 174 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP 174 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc
Confidence 99988 653211 1111 1124588999999998777765431 344444322 234
Q ss_pred ceeEeC----CCCCEE-EEEcCCCeEEEEEC---Cce-----eeeeccc--CCCceEEEcCCCCEEEEEcCCCcEEEEEc
Q psy16005 137 SSISLD----HEHGLV-AVGGADSKISIVEN---GAK-----VSSLPID--YEPSSISLDHEHGLVAVGGADSKVHIYEL 201 (248)
Q Consensus 137 ~~~~~~----~~~~~~-~~~~~~~~i~~~~~---~~~-----~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~ 201 (248)
..++++ ++++.+ ++...++.|..|+. ++. ...+... ..+..++++++|+++++...++.|.+||.
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 567888 998655 44467789999982 321 1122212 34678999999998887777889999999
Q ss_pred CCCCCCCcccccCCcCeEEEEEcCCCcEEE-EEcCCCeEEEEECCC
Q psy16005 202 NNKSLSPKAELDHLGPVTDCSFSPSNEYLV-ASDAHRKVVLYRVPD 246 (248)
Q Consensus 202 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~ 246 (248)
++++...... .+...+.+++|+|+++.|+ +...++.|..|++..
T Consensus 255 ~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 255 DGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8776544443 3456789999999999554 455678999999764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=122.37 Aligned_cols=220 Identities=9% Similarity=0.021 Sum_probs=148.1
Q ss_pred CCCCEEEEeC-------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEECCC
Q psy16005 27 PKGKNFLYTN-------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVN 89 (248)
Q Consensus 27 ~~~~~l~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~ 89 (248)
++++++++.. |+.|++||..+++....+..+..+ .++|+||++++++++ .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3566666542 569999999999988888766555 899999999999886 367899999988
Q ss_pred CceeeeeeccC----CCCCeeEEEEecCCCEEEEEeC---CcEEEEEccCCCCCce---------eEeCCCC-CEEEEEc
Q psy16005 90 KEHILKNEFHP----IGGPIKDIAWSPDNQRMISIVE---NGAKVSSLPIDYEPSS---------ISLDHEH-GLVAVGG 152 (248)
Q Consensus 90 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~---------~~~~~~~-~~~~~~~ 152 (248)
.+.+....+.. +......++++|||++|+++.. +.+.+|++.....+.. +.+.|++ ..+++.+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 77654333321 2345778999999999998863 3468888765443332 3355654 5777888
Q ss_pred CCCeEEEEEC---Cceeee------ecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc--------cc--
Q psy16005 153 ADSKISIVEN---GAKVSS------LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE--------LD-- 213 (248)
Q Consensus 153 ~~~~i~~~~~---~~~~~~------~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------~~-- 213 (248)
.||.+..++. ++.... +.....+..+..+|++..++..+.++.|.++|+.......... ..
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 8999888872 433311 1222223344557788877878888999999997654211000 00
Q ss_pred -CCcCeEEEEEcCCCcEEEEEcC-----------CCeEEEEECCCCC
Q psy16005 214 -HLGPVTDCSFSPSNEYLVASDA-----------HRKVVLYRVPDFE 248 (248)
Q Consensus 214 -~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~vw~~~~~~ 248 (248)
.......++|+|+++.++.+.. .+.|.+||+.+++
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~ 297 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ 297 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc
Confidence 0111223789999888776543 3589999998764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-15 Score=115.37 Aligned_cols=217 Identities=9% Similarity=-0.062 Sum_probs=140.3
Q ss_pred EEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC-------CcceEEEEECcCCcEEEEEcc--CCe
Q psy16005 22 VLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSPSGFYIASGDI--SGK 81 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--dg~ 81 (248)
.+++||||+++++++ ++.|.++|..+.+....+... ......+.|+|||++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999874 468999999988877765422 123458999999999998874 478
Q ss_pred EEEEECCCCceeee-eeccCCCCCeeEEEEecCCCE-EEEEeCC-cEEEEEccCCCCC----------------ceeEeC
Q psy16005 82 VRIWDTVNKEHILK-NEFHPIGGPIKDIAWSPDNQR-MISIVEN-GAKVSSLPIDYEP----------------SSISLD 142 (248)
Q Consensus 82 i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~-l~~~~~~-~~~i~~~~~~~~~----------------~~~~~~ 142 (248)
|.++| .+++.+.. .... . ++.+.|+++. +++.+.+ ...+++. ..... ....+.
T Consensus 150 v~viD-~t~~~~~~~i~~~---~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP---T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC---c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence 99999 88875533 2221 1 1333444322 2222222 2333333 11111 112334
Q ss_pred CCCCEEEEEcCCCeEEEEECC-c---eeeeecc-----------cCCCceEEEcCCCCEEEEEcC----------CCcEE
Q psy16005 143 HEHGLVAVGGADSKISIVENG-A---KVSSLPI-----------DYEPSSISLDHEHGLVAVGGA----------DSKVH 197 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~-~---~~~~~~~-----------~~~~~~~~~s~~~~~l~~~~~----------d~~v~ 197 (248)
+++..++..+..+.+.+.|.. . ....+.. ......++++|+++.++++.. .+.|.
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 444444444567788888842 1 1222211 111234789999998877653 35799
Q ss_pred EEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEc-CCCeEEEEECCCCC
Q psy16005 198 IYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~vw~~~~~~ 248 (248)
++|+.+++.+..+..+ .....++|+|||+ .++++. .++.|.++|+.++|
T Consensus 302 VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 302 SVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999887666433 3579999999999 777776 58999999998875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-14 Score=108.09 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=161.6
Q ss_pred ccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee-ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+...+.+++++++|+.+++.. ++.|.+||.. ++..... ..+...+.+++++++++++++...++.|..||.. ++.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII- 89 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence 346799999999999888776 7899999987 5543322 2345678999999999988887778899999986 332
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
....+......+..++++++++.+++... +++..++.. ....+..++++++++++++...++.|..++.
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 22333334567899999999987776543 345555542 1234677888999988888777889999995
Q ss_pred Cceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 163 GAKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 163 ~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
......+. ....+..++++++|.++++...++.|..||. +++........+...+.+++++++|+.+++...++.|
T Consensus 170 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceE
Confidence 33333332 2334678999999997777777889999998 6554322122245678999999999977776677889
Q ss_pred EEEEC
Q psy16005 240 VLYRV 244 (248)
Q Consensus 240 ~vw~~ 244 (248)
..||.
T Consensus 249 ~~~d~ 253 (299)
T 2z2n_A 249 GRLTS 253 (299)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 99986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-15 Score=114.51 Aligned_cols=204 Identities=7% Similarity=-0.010 Sum_probs=146.9
Q ss_pred CcEEEEEecCCCceeeeee------cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEE
Q psy16005 37 GNSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW 110 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 110 (248)
++.|.++|.++++....+. ........+.+. +++.+++...++.|.+||..+++.+.. +. ....+..+++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~--i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR--IT-GFTSPRYIHF 91 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE--EE-CCSSEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE--cC-CCCCCcEEEE
Confidence 6899999999988765442 122346777774 456666667789999999999886533 32 3467899999
Q ss_pred ecCCCEEEEEe--CCcEEEEEccC---------CC------CCceeEeCCCCCEEEEEc-CCCeEEEEE--CCceeeeec
Q psy16005 111 SPDNQRMISIV--ENGAKVSSLPI---------DY------EPSSISLDHEHGLVAVGG-ADSKISIVE--NGAKVSSLP 170 (248)
Q Consensus 111 ~~~~~~l~~~~--~~~~~i~~~~~---------~~------~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~~~~~~~~~ 170 (248)
+++++ ++++. .+.+.+++... .. .+..+++ .++.++++.. .++.|.++| +++....+.
T Consensus 92 ~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 92 LSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp EETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred eCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 99985 44444 45567776532 33 5666777 3444455444 488999999 566677777
Q ss_pred ccCCCceEEEcCCCCEEEEEcCC----------CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 171 IDYEPSSISLDHEHGLVAVGGAD----------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 171 ~~~~~~~~~~s~~~~~l~~~~~d----------~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
....+..++++|+|++++++..+ +.|.++|..+++.......+....+..++|+|+++.|+++.. .|.
T Consensus 170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~ 247 (328)
T 3dsm_A 170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIW 247 (328)
T ss_dssp CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEE
T ss_pred cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEE
Confidence 77778999999999977776554 789999999887654443332346899999999999988765 899
Q ss_pred EEECCCCC
Q psy16005 241 LYRVPDFE 248 (248)
Q Consensus 241 vw~~~~~~ 248 (248)
+||..+++
T Consensus 248 ~~d~~t~~ 255 (328)
T 3dsm_A 248 RMPVEADR 255 (328)
T ss_dssp EEETTCSS
T ss_pred EEECCCCc
Confidence 99998764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-16 Score=120.85 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=160.0
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC-------CcceEEEEECc
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSP 68 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~ 68 (248)
+++..++.+. .. .++++|||++++.++ ++.|.++|..+++.+..+.-. ......+.++|
T Consensus 110 ~vv~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp 186 (426)
T 3c75_H 110 RILGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP 186 (426)
T ss_dssp EEEEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred EEEEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence 3455555433 23 799999999888874 468999999999988776421 12345789999
Q ss_pred CCcEEEEEcc--CCeEEEEECCCCceeeeeeccCC-----CCCeeEEEEecCCCEEEEEeCCcEEEE------EccCCCC
Q psy16005 69 SGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMISIVENGAKVS------SLPIDYE 135 (248)
Q Consensus 69 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~i~------~~~~~~~ 135 (248)
||++++++.. ++.|.+.|+.+++.+......+. .+.-..+.+++||+.++.....+...+ +......
T Consensus 187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~ 266 (426)
T 3c75_H 187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL 266 (426)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence 9999998864 57899999999886644443211 011122556677776666553332221 1111111
Q ss_pred CceeEeCCCCCEEEEEcCCCeEEEEEC-Cceee---eecc-----------cCCCceEEEcCCCCEEEEEcC--------
Q psy16005 136 PSSISLDHEHGLVAVGGADSKISIVEN-GAKVS---SLPI-----------DYEPSSISLDHEHGLVAVGGA-------- 192 (248)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~---~~~~-----------~~~~~~~~~s~~~~~l~~~~~-------- 192 (248)
...+.+.+++..++.....+.+.+.|. +.... .+.. ......++++|+++.+++...
T Consensus 267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence 123466888888777778899999983 22211 1110 122334899999997777642
Q ss_pred --CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEEc-CCCeEEEEECCCCC
Q psy16005 193 --DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 193 --d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~vw~~~~~~ 248 (248)
.+.|.++|..+.+.+..+..+. ....+.|+|||+ +++++. .++.|.++|+.+++
T Consensus 347 ~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 347 AASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 3579999999999877665433 578999999999 888887 58999999999875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-16 Score=131.33 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=147.2
Q ss_pred CcEEEEeCCCCCEEEEeC--C----cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCe-----------
Q psy16005 19 QPIVLGGDPKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGK----------- 81 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------- 81 (248)
.+..++|||||++|+++. + ..|++||+.+++..... .+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 577899999999999874 2 37999999998875532 22222357899999 98888776543
Q ss_pred ---EEEEECCCCcee--eeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC-C-Ccee---------
Q psy16005 82 ---VRIWDTVNKEHI--LKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY-E-PSSI--------- 139 (248)
Q Consensus 82 ---i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~-~-~~~~--------- 139 (248)
|++|++.++... .......+...+..+.|+|||++|+..+.+ .+.+|++..+. . ...+
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 899999876532 222333333458899999999998877643 34666664331 1 2111
Q ss_pred EeCCCCCEEEEEcC----CCeEEEEECCc----eeeeecccC-CCceEEEcCCCCEEEEEcCCCcEEEEEcC-CCCCCCc
Q psy16005 140 SLDHEHGLVAVGGA----DSKISIVENGA----KVSSLPIDY-EPSSISLDHEHGLVAVGGADSKVHIYELN-NKSLSPK 209 (248)
Q Consensus 140 ~~~~~~~~~~~~~~----~~~i~~~~~~~----~~~~~~~~~-~~~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~~~~~ 209 (248)
.+.|+++.++..+. ++.|..|+... ....++... .+..++++ ++.++++...|+..+||.+. +++....
T Consensus 322 ~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 322 FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGA 400 (741)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceee
Confidence 23467887776654 34588898322 222333322 23456666 55677777888877776554 3333333
Q ss_pred ccccCCcCeEEEEEcCCCcEEEEE----cCCCeEEEEECCCCC
Q psy16005 210 AELDHLGPVTDCSFSPSNEYLVAS----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 210 ~~~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~vw~~~~~~ 248 (248)
+..++.+.+..+.++|+++.|+.. ...+.|++||+.+++
T Consensus 401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 401 VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 332346678999999998866533 335899999998763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-16 Score=118.12 Aligned_cols=236 Identities=10% Similarity=-0.019 Sum_probs=154.8
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecCC-------cceEEEEECc
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEHS-------CAVNVAKYSP 68 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~-------~~v~~~~~s~ 68 (248)
+++..++.+.. .. ++++|||++++.++ ++.|.+||..+++....+.-.. .....+.|+|
T Consensus 70 ~v~~~I~vG~~--P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 70 RVIGMIDGGFL--PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp EEEEEEEECSS--CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred eEEEEEECCCC--Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 34455554332 24 99999999888764 4679999999999888775321 2355789999
Q ss_pred CCcEEEEEcc--CCeEEEEECCCCceeeeeeccCCC-----CCeeEEEEecCCCEEEEEeCC-cEEEEEccC----C-CC
Q psy16005 69 SGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIG-----GPIKDIAWSPDNQRMISIVEN-GAKVSSLPI----D-YE 135 (248)
Q Consensus 69 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~----~-~~ 135 (248)
||++++++.. ++.|.++|+.+++.+......+.. +.-.-++.++||+.++..... +..+-.... . ..
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~ 226 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF 226 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence 9999988764 689999999999866444432210 011123667777776666543 221110000 0 00
Q ss_pred C-ceeEeC-CCCCEEEEEcCCCeEEEEECC-c---eeeeec-----------ccCCCceEEEcCCCCEEEEEcC------
Q psy16005 136 P-SSISLD-HEHGLVAVGGADSKISIVENG-A---KVSSLP-----------IDYEPSSISLDHEHGLVAVGGA------ 192 (248)
Q Consensus 136 ~-~~~~~~-~~~~~~~~~~~~~~i~~~~~~-~---~~~~~~-----------~~~~~~~~~~s~~~~~l~~~~~------ 192 (248)
+ ....|. ++|++++ .+.++.+++.|.. . ....+. .......++++|+++.+++...
T Consensus 227 ~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp BCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred ccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 1 113443 5665555 5558999999942 2 222221 0223456888999998887643
Q ss_pred ----CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEEE-cCCCeEEEEECCCCC
Q psy16005 193 ----DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVAS-DAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 ----d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~d~~i~vw~~~~~~ 248 (248)
.+.|.++|+++++.+..+..++ .+..++++||++ +|+++ ..++.|.++|..+++
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 2579999999999887776554 688999999997 66665 558999999999875
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-15 Score=110.46 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=137.0
Q ss_pred ccCCcEEEEe-CCCCCEEEEeC--CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGG-DPKGKNFLYTN--GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~-s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
+...+..+++ .++++++++.. ++.|++|+ .+++....+. .+...+.+++++|+++++++...++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 3456889999 67887777764 78999999 5666666553 334568999999999988888888999999965 44
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEe-CCcEEEEEccC--------C---CCCceeEeCCCCCEEEEEcCCC-eEE
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIV-ENGAKVSSLPI--------D---YEPSSISLDHEHGLVAVGGADS-KIS 158 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~~i~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~-~i~ 158 (248)
.........+...+..++++++|+.+++.. .+.+.+|+... . ..+..++++++++++++...++ .|.
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~ 232 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLT 232 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEE
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEE
Confidence 332222223445789999999998666654 44567777532 1 3567899999999988888776 999
Q ss_pred EEE-CCceeeeecccC---CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 159 IVE-NGAKVSSLPIDY---EPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 159 ~~~-~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
+|+ .++.+..+.... .+..++++|+|+++++ +.++.|++|+.....
T Consensus 233 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 233 IFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 999 555555554332 3568999999986666 568999999986543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=115.71 Aligned_cols=189 Identities=11% Similarity=0.105 Sum_probs=137.2
Q ss_pred CcceEEEEECcCCcEEEEEccC------------------------CeEEEEECCCCceeeeeeccCCCCCeeEEEEecC
Q psy16005 58 SCAVNVAKYSPSGFYIASGDIS------------------------GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 113 (248)
-+.+.+++++|+|+++++...+ +.|.+||..+++... ..-..+-..+..++++|+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ-SSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE-EECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe-ccCCCccCCceEEEECCC
Confidence 3568999999999998888777 479999998887542 112234457899999999
Q ss_pred CCEEEEEeCC-cEEEEEccCC--------------------CCCceeEeCC-CCCEEEEEc-CCCeEEEEE-CCceeeee
Q psy16005 114 NQRMISIVEN-GAKVSSLPID--------------------YEPSSISLDH-EHGLVAVGG-ADSKISIVE-NGAKVSSL 169 (248)
Q Consensus 114 ~~~l~~~~~~-~~~i~~~~~~--------------------~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~-~~~~~~~~ 169 (248)
|+.+++...+ .+.+|+.... ..+..++++| ++.++++.+ .++.|+.|+ .++.+..+
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~ 181 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQW 181 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEe
Confidence 9966666544 4577775422 1366899999 788888886 689999999 56666555
Q ss_pred ccc-----------CCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEE----
Q psy16005 170 PID-----------YEPSSISLDHE-HGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVA---- 232 (248)
Q Consensus 170 ~~~-----------~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~---- 232 (248)
... ..+..++++|+ +.++++...++.|++||..+++.+..+.. .+...+..++|+| +..+++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 321 23789999998 77777777889999999997776544432 3566788999999 333333
Q ss_pred ---EcCCCeEEEEECCCCC
Q psy16005 233 ---SDAHRKVVLYRVPDFE 248 (248)
Q Consensus 233 ---~~~d~~i~vw~~~~~~ 248 (248)
...+..|++|++.+++
T Consensus 261 ~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp CTTCSCCCCEEEEETTTCC
T ss_pred EeccCCCcEEEEEEcCCCe
Confidence 2345689999987764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-15 Score=111.58 Aligned_cols=189 Identities=10% Similarity=0.041 Sum_probs=135.5
Q ss_pred eeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEE
Q psy16005 50 ISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKV 127 (248)
Q Consensus 50 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i 127 (248)
....+..+.....+++|+|+++ +++++..++.|..||..++ . ..+..+...+.+++++++|+.+++... .++.+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L--SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--EEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--EEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 3344545566678999999998 7788888999999999876 2 233345677999999999997776654 45677
Q ss_pred EEccCC--------------CCCceeEeCCCCCEEEEE----c-------------CCCeEEEEECC-ceeeeecccCCC
Q psy16005 128 SSLPID--------------YEPSSISLDHEHGLVAVG----G-------------ADSKISIVENG-AKVSSLPIDYEP 175 (248)
Q Consensus 128 ~~~~~~--------------~~~~~~~~~~~~~~~~~~----~-------------~~~~i~~~~~~-~~~~~~~~~~~~ 175 (248)
|+.... ..+..++++|+|+++++. . ..+.|..++.. +..........+
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKP 174 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSE
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCC
Confidence 776321 234578999999988873 2 13567777743 333333344456
Q ss_pred ceEEEcCCCCEEEEEcCCCcEEEEEcC-CCCC---CCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 176 SSISLDHEHGLVAVGGADSKVHIYELN-NKSL---SPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d~~v~i~d~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..++|+|+++.+++.+.++.|++|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+|+.+
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 889999999988777788999999997 4433 1222 2345567889999999876666 7889999875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-14 Score=104.32 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=155.3
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee-eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD-IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...+.+++++++|+++++.. ++.|..|+.. ++... .+......+.+++++++++++++...++.|..||. +++..
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~- 132 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR- 132 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-
Confidence 35788999999999888776 7889999976 43322 12224457899999999998888777889999998 55432
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
..........+..++++++|+..++... +++..++.. ....+..++++++++++++...++.|..|+..
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 212 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS 212 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC
Confidence 2333334567899999999977666543 345555431 12235678889999988877778899999953
Q ss_pred ceeeeecc---cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLPI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+.. ...+..++++++|+++++...++.|..||. +++........+...+.++++ ++++.+++.. .+.+.
T Consensus 213 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~ 289 (299)
T 2z2n_A 213 GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG 289 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence 33333322 245788999999987776667789999998 343221112234567899999 8888777665 56777
Q ss_pred EEECCCC
Q psy16005 241 LYRVPDF 247 (248)
Q Consensus 241 vw~~~~~ 247 (248)
.++.++.
T Consensus 290 ~~~~~~~ 296 (299)
T 2z2n_A 290 KLTLIKD 296 (299)
T ss_dssp EEEEC--
T ss_pred EEEcCcc
Confidence 7777654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-15 Score=124.23 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=144.1
Q ss_pred CCCCEEEEeC--C----cEEEEEecCCCceeeee------ecCCcceEEEEECcCCcEEEEEccCC-----eEEEEECCC
Q psy16005 27 PKGKNFLYTN--G----NSVIIRNIENPAISDIY------TEHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVN 89 (248)
Q Consensus 27 ~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~ 89 (248)
|+|++++... . +.+++.+...++....+ .+|...+..++|||||++||.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888763 1 25566665555443222 13444688999999999998765543 899999999
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-----------------EEEEEccCCC--------------CCce
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-----------------AKVSSLPIDY--------------EPSS 138 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----------------~~i~~~~~~~--------------~~~~ 138 (248)
++.... .+.. ..+..++|+|||+.|+.++.++ +.+|++.... ....
T Consensus 161 g~~~~~-~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPD-VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEE-EEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCcc-cccC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 875432 2221 2367799999999999887542 5667764321 1236
Q ss_pred eEeCCCCCEEEEEcC-----CCeEEEEEC--------Cc-eeeeecccCCCceEEEcCCCCEEEEEcCC----CcEEEEE
Q psy16005 139 ISLDHEHGLVAVGGA-----DSKISIVEN--------GA-KVSSLPIDYEPSSISLDHEHGLVAVGGAD----SKVHIYE 200 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~-----~~~i~~~~~--------~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----~~v~i~d 200 (248)
+.++|++++++..+. +..|++||. +. ....+..........|+|+|+.|+..+.. +.|.+||
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d 317 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINID 317 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEe
Confidence 789999998887654 568999993 22 34444433333334689999987776543 3699999
Q ss_pred cCCCCC--CCcccccCCc--CeEEEEEcCCCcEEEEEcCCCe--EEEEECCCC
Q psy16005 201 LNNKSL--SPKAELDHLG--PVTDCSFSPSNEYLVASDAHRK--VVLYRVPDF 247 (248)
Q Consensus 201 ~~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~--i~vw~~~~~ 247 (248)
+.++.. ...+. .|.. .+..++|++++.++++...++. |.+|++.++
T Consensus 318 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 318 FTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp TTSCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCCCcccceecc-CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC
Confidence 987642 12222 3433 6888999988888888888874 566676554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-14 Score=111.91 Aligned_cols=227 Identities=10% Similarity=0.080 Sum_probs=155.4
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC--eEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~ 93 (248)
...+..++|+|+|+++++.. ++.|++||..++........... .. ++|+|+++.|+++..++ .|.+++...+...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 45788999999999666665 68999999988776655544333 33 99999999998888766 7888988765432
Q ss_pred eee-ec-cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC---------------CCCc-eeEeCCC-CCEEEEEcC
Q psy16005 94 LKN-EF-HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID---------------YEPS-SISLDHE-HGLVAVGGA 153 (248)
Q Consensus 94 ~~~-~~-~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~---------------~~~~-~~~~~~~-~~~~~~~~~ 153 (248)
... .+ ......+.+++++|++..|+++..++ +..|+.... ..+. .++++|+ +.++++...
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 111 11 21346678899999555555555444 455654311 1134 8999994 667777778
Q ss_pred CCeEEEEECCceeeeecc----------------cCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc----
Q psy16005 154 DSKISIVENGAKVSSLPI----------------DYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL---- 212 (248)
Q Consensus 154 ~~~i~~~~~~~~~~~~~~----------------~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~---- 212 (248)
++.|+.|+.......+.. -..+..++++|+|+++++-. .++.|+.|++.+++.......
T Consensus 288 ~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~ 367 (409)
T 3hrp_A 288 LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVA 367 (409)
T ss_dssp TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCB
T ss_pred CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCC
Confidence 889999983322322211 12378899999999777777 788999999776653211110
Q ss_pred ---------cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 213 ---------DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 213 ---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
..-.....++++|+|.++++-..++.|+.++++
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 012458999999998888888888899988763
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-14 Score=116.28 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=155.1
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecC--CCceeeeeecCCcceEEEEEC----cCCcEEEEEcc-CCeEEEEECCCC
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIE--NPAISDIYTEHSCAVNVAKYS----PSGFYIASGDI-SGKVRIWDTVNK 90 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~--~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-dg~i~iwd~~~~ 90 (248)
.+..+.|+|||+++++++ ++.|.+||+. +++.+..+.... ....++|+ |||+++++++. +++|.++|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 466899999999988876 8899999995 777777776533 46789999 69998887765 589999999888
Q ss_pred ceeeeeeccC--------C-CCCeeEEEEecCCCEEEEEeCCc--EEEEEcc-----------CCCCCceeEeCCCCCEE
Q psy16005 91 EHILKNEFHP--------I-GGPIKDIAWSPDNQRMISIVENG--AKVSSLP-----------IDYEPSSISLDHEHGLV 148 (248)
Q Consensus 91 ~~~~~~~~~~--------~-~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~-----------~~~~~~~~~~~~~~~~~ 148 (248)
+.+......+ | ...+..+..++++..++....+. +.+.++. ....+..+.|+|+++++
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 7654433321 1 12577888888877766665443 2334432 23345577899999987
Q ss_pred EEEc-CCCeEEEEE--CCceeeeecc-cCCC---ceEE-EcCCCC-EEEEEc-CCCcEEEEEcCCC-------CCCCccc
Q psy16005 149 AVGG-ADSKISIVE--NGAKVSSLPI-DYEP---SSIS-LDHEHG-LVAVGG-ADSKVHIYELNNK-------SLSPKAE 211 (248)
Q Consensus 149 ~~~~-~~~~i~~~~--~~~~~~~~~~-~~~~---~~~~-~s~~~~-~l~~~~-~d~~v~i~d~~~~-------~~~~~~~ 211 (248)
+++. .++.|.++| +++.+..++. ...+ .... ++|++. .++++. .++.|.++|..+. +.+....
T Consensus 357 ~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe
Confidence 6654 678999999 5555555554 2222 2333 578755 444443 4689999999873 2322222
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcC-------CCeEEEEECCCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDA-------HRKVVLYRVPDF 247 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~-------d~~i~vw~~~~~ 247 (248)
.....-..+..+|+++++.+... .+.|.++|+.+.
T Consensus 437 -~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 437 -ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp -CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred -cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 12222244778999999988653 359999998765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-13 Score=101.68 Aligned_cols=224 Identities=11% Similarity=0.056 Sum_probs=159.0
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee-eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...+.++++.++|+.+++.. ++.|.+|+.. ++.... +......+.+++++++++++++...++.|..+|.. ++. .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~ 95 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-T 95 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-E
Confidence 45788999999999888775 7899999987 554432 22234678999999999988877778899999987 543 2
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
..........+..++++++++.+++... +++..++.. ....+..++++++++++++...++.|..++..
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 175 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT 175 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 2333334467899999999987776653 344444432 12346778889999977777778889999843
Q ss_pred ceeeeecc---cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLPI---DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+.. ...+..++++++|.+.++....+.|..||. +++........+...+.+++++++|+.+++...++.|.
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 254 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIG 254 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEE
Confidence 33333322 234688999999987777777778999998 44432221223456689999999999777766678898
Q ss_pred EEEC
Q psy16005 241 LYRV 244 (248)
Q Consensus 241 vw~~ 244 (248)
.|+.
T Consensus 255 ~~~~ 258 (300)
T 2qc5_A 255 RITN 258 (300)
T ss_dssp EECT
T ss_pred EECC
Confidence 8886
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-15 Score=111.11 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=135.0
Q ss_pred CCcEEEEEccCCeEEEEECCCCceeeeeeccCCC-CCeeEEEEecCCCEEEEEeC-------CcEEEEEccCC--CCCce
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMISIVE-------NGAKVSSLPID--YEPSS 138 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-------~~~~i~~~~~~--~~~~~ 138 (248)
.+++|++++.++.|.+||.++++.+.... .+. ..+.++.++|+|+.+++... ++..+|.+..+ ..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATKAGEILFSYSKGAKMITRDGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECTTSCEEEECBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECCCCCEEEeCCCCEEEECCCCCEEEEEcCCCCccccc
Confidence 35889999999999999999999765444 333 46889999999998884321 24456777654 34567
Q ss_pred eEeCCCCCEEEEEcC-CCeEEEEE-CCceeeeeccc-------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 139 ISLDHEHGLVAVGGA-DSKISIVE-NGAKVSSLPID-------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~-~~~i~~~~-~~~~~~~~~~~-------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
..+.++++++++.+. ++.+..++ .++.+..+... ..+..++..++|.++++...++.|..||.+ ++.+..
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~ 160 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS 160 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence 788999999998877 78888888 67776666432 234567889999999999999999999998 777555
Q ss_pred ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 210 AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 210 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.. ....+.++.+.++|+.++++..++.|..+|..+|+
T Consensus 161 ~~--~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 161 VK--LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp EE--CSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred EE--CCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 43 23456778889999999998888899999988775
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-14 Score=115.39 Aligned_cols=215 Identities=16% Similarity=0.134 Sum_probs=147.1
Q ss_pred CCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECC--CCceeeeeeccCCCC
Q psy16005 27 PKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV--NKEHILKNEFHPIGG 103 (248)
Q Consensus 27 ~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~ 103 (248)
|.+.++++.. ++.|.++|..+++.+..+.. ...+..+.|+|||+++++++.++.|.+||+. +++.+ ..+.. ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~-G~ 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKI-GS 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEEC-CS
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEec-CC
Confidence 3333444444 89999999999998888754 3456799999999999999999999999996 65544 33332 34
Q ss_pred CeeEEEEe----cCCCEEEEEeC--CcEEEEEccCCC---------------------CCceeEeCCCCCE-EEEEcCCC
Q psy16005 104 PIKDIAWS----PDNQRMISIVE--NGAKVSSLPIDY---------------------EPSSISLDHEHGL-VAVGGADS 155 (248)
Q Consensus 104 ~v~~~~~~----~~~~~l~~~~~--~~~~i~~~~~~~---------------------~~~~~~~~~~~~~-~~~~~~~~ 155 (248)
....++|+ |||++++++.. +.+.+++..... .+..+..++++.. ++....+|
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 56899999 69999988874 345666643211 2234555666554 44455678
Q ss_pred eEEEEECCc----eeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc----cCCcCeEEEEEcCC
Q psy16005 156 KISIVENGA----KVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL----DHLGPVTDCSFSPS 226 (248)
Q Consensus 156 ~i~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~----~~~~~v~~~~~s~~ 226 (248)
.|.++|... .+..+.....+..+.|+|+|+++++++ .++.|.++|+.+++....... .|.+.-..+ ++|+
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~ 399 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPT 399 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETT
T ss_pred eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCC
Confidence 999998332 233344445567889999999887765 578899999999886544433 343322222 5887
Q ss_pred Cc-EEEEEc-CCCeEEEEECCC
Q psy16005 227 NE-YLVASD-AHRKVVLYRVPD 246 (248)
Q Consensus 227 ~~-~l~~~~-~d~~i~vw~~~~ 246 (248)
+. .+++.. .++.|.++|..+
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCT
T ss_pred CCcEEEeCCCCCCeEEEecCCC
Confidence 54 444543 468999999876
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-15 Score=124.44 Aligned_cols=216 Identities=9% Similarity=0.015 Sum_probs=139.3
Q ss_pred CCCCCEEEEeC--C----cEEEEEecCCCceeeeee------cCCcceEEEEECcCCcEEEE-----EccCCeEEEEECC
Q psy16005 26 DPKGKNFLYTN--G----NSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIAS-----GDISGKVRIWDTV 88 (248)
Q Consensus 26 s~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~-----~~~dg~i~iwd~~ 88 (248)
+|+|++++... . ..+++.+...++....+. +|...+.+++|||||++||. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888764 2 345555655554433332 34457899999999999983 4445689999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc--------------EEEEEccCCC--------------CCceeE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG--------------AKVSSLPIDY--------------EPSSIS 140 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------------~~i~~~~~~~--------------~~~~~~ 140 (248)
+++.+....+.. .....++|+|||+.|+.++.+. +.+|++.... ....+.
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 987531112221 1126789999999999887643 6777765321 234678
Q ss_pred eCCCCCEEEEEcCCC----eEEEEEC-Cceeeee-cccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCC--CCc
Q psy16005 141 LDHEHGLVAVGGADS----KISIVEN-GAKVSSL-PIDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSL--SPK 209 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~----~i~~~~~-~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~--~~~ 209 (248)
++|+|++++..+.++ .|++++. +.....+ ..........+ ++|.+++.+. .++.|.+||+.+++. ...
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~ 312 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE 312 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence 999999888777655 6777763 2223333 23334445555 6666444443 257899999987653 122
Q ss_pred ccccC-CcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 210 AELDH-LGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 210 ~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+...+ ...+..++|+ ++.++++...|+..++|.++
T Consensus 313 l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 313 IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 22222 4568889998 67788888889888887653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-14 Score=104.38 Aligned_cols=212 Identities=12% Similarity=0.102 Sum_probs=145.8
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
.-..+..|+|++..|+... ++.|+.||..+++.. .+ .....+.+++++|+++++++ . ++.|.+||.++++....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 3455889999766655553 789999998877653 33 34567999999999995554 3 56899999987764322
Q ss_pred eeccC--CCCCeeEEEEecCCCEEEEEeC----------CcEEEEEccCC----------CCCceeEeCCCCCEE-EEEc
Q psy16005 96 NEFHP--IGGPIKDIAWSPDNQRMISIVE----------NGAKVSSLPID----------YEPSSISLDHEHGLV-AVGG 152 (248)
Q Consensus 96 ~~~~~--~~~~v~~~~~~~~~~~l~~~~~----------~~~~i~~~~~~----------~~~~~~~~~~~~~~~-~~~~ 152 (248)
..... ....+..++++|+|+.+++... ....+|.+... ..+..++++|+++.+ ++.+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecC
Confidence 22211 1235788999999997665532 22466766533 234678999999865 5556
Q ss_pred CCCeEEEEEC----Cce-----eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEE
Q psy16005 153 ADSKISIVEN----GAK-----VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCS 222 (248)
Q Consensus 153 ~~~~i~~~~~----~~~-----~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~ 222 (248)
.++.|..|+. +.. ...+. ....+..++++++|++.++....+.|..||..+++...... .+...+++++
T Consensus 169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~~~t~~~ 247 (297)
T 3g4e_A 169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-LPVDKTTSCC 247 (297)
T ss_dssp GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE-CSSSBEEEEE
T ss_pred CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-CCCCCceEEE
Confidence 6788999872 221 11111 22456889999999877777777889999999888765554 3446789999
Q ss_pred Ec-CCCcEEEEEc
Q psy16005 223 FS-PSNEYLVASD 234 (248)
Q Consensus 223 ~s-~~~~~l~~~~ 234 (248)
|. |+++.|+.++
T Consensus 248 f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 248 FGGKNYSEMYVTC 260 (297)
T ss_dssp EESGGGCEEEEEE
T ss_pred EeCCCCCEEEEEc
Confidence 98 8887765543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-15 Score=121.62 Aligned_cols=230 Identities=10% Similarity=0.061 Sum_probs=146.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC-------
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG------- 80 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------- 80 (248)
..+...+..++|||||++|+.+. ...|+++|+.+++..... .+......++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 34455688889999999999752 148999999999865431 111113578899 999998887764
Q ss_pred ------eEEEEECCCCce--eeeeeccC-CCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCCC-CCcee------
Q psy16005 81 ------KVRIWDTVNKEH--ILKNEFHP-IGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPIDY-EPSSI------ 139 (248)
Q Consensus 81 ------~i~iwd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~~-~~~~~------ 139 (248)
.|++|++.++.. ........ +......+.|+|||++|+..... .+.++++..+. ....+
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 499999987653 22233333 44557889999999988765432 34555654332 12211
Q ss_pred ---EeCCCCCEEEE-EcCC---CeEEEEECC--ce---eeeecccCCCceEEEcCCCCEEEEEcCCC---cEEEEEcCCC
Q psy16005 140 ---SLDHEHGLVAV-GGAD---SKISIVENG--AK---VSSLPIDYEPSSISLDHEHGLVAVGGADS---KVHIYELNNK 204 (248)
Q Consensus 140 ---~~~~~~~~~~~-~~~~---~~i~~~~~~--~~---~~~~~~~~~~~~~~~s~~~~~l~~~~~d~---~v~i~d~~~~ 204 (248)
.+++++..++. ...+ +.|..++.. .. ....+....+. .|+++++.|+....++ .|++||+.++
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 24555555443 3333 578888832 22 22233333333 8999999887766543 6899998755
Q ss_pred CCCCcccccCCcCeEEEEEcCCCcEEEEEcCC----CeEEEEECCCCC
Q psy16005 205 SLSPKAELDHLGPVTDCSFSPSNEYLVASDAH----RKVVLYRVPDFE 248 (248)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~vw~~~~~~ 248 (248)
.. ..+..+..+.+..+.++|+++.++....+ +.+..||+.+++
T Consensus 361 ~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 RV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 43 23333455667888889998877655433 789999987764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-15 Score=114.23 Aligned_cols=174 Identities=10% Similarity=0.077 Sum_probs=125.6
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc---------eee-eeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA---------ISD-IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~---------~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
.++..+++++...++++|+...+.+|++...+ ... ....+.. |+.++| |+++|+++ .++.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 36899999999999999986788889876433 111 2234666 999999 89999998 8899999999
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceee
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVS 167 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (248)
.+.... .....|...+.++.+.+. .++++..||.+.+||......
T Consensus 114 ~sl~~~--~~~~~~~~~v~~i~~~~p---------------------------------~~av~~~dG~L~v~dl~~~~~ 158 (388)
T 1xip_A 114 EELSEF--RTVTSFEKPVFQLKNVNN---------------------------------TLVILNSVNDLSALDLRTKST 158 (388)
T ss_dssp SSTTCE--EEEEECSSCEEEEEECSS---------------------------------EEEEEETTSEEEEEETTTCCE
T ss_pred hhhhcc--CccceeecceeeEEecCC---------------------------------CEEEEECCCCEEEEEccCCcc
Confidence 876532 233445555655544331 156677888888888332111
Q ss_pred eecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC--CCcc------c--ccCCcCeEEEEEcCCCcEEEEE
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL--SPKA------E--LDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~------~--~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
..+...+.+++|||+| ++.|..||.+++|+...++. ...+ . .+|...|.++.|.++++++++-
T Consensus 159 -~~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 159 -KQLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -EEEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -ccccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 1245678999999999 67889999999999887663 2222 1 1367889999999999988763
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-12 Score=98.17 Aligned_cols=223 Identities=10% Similarity=0.030 Sum_probs=153.6
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee-eecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
...+.+++++++|+++++.. ++.|..+|.. ++.... +......+.++++.++++++++...++.|..+|.. ++..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~- 137 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY- 137 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-
Confidence 35788999999999877766 7889999977 554322 22234678999999999988887778899999987 5432
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
...+......+..++++++++..++... +++..++.. ....+..++++++++++++....+.|..++..
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT 217 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence 2333334567899999999985555442 334555432 11245678889999888877778889999953
Q ss_pred ceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+. ....+.+++++++|++.++...++.|..||. +++............+.+++++++|+.+++.. . .|.
T Consensus 218 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~ 294 (300)
T 2qc5_A 218 GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIG 294 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence 3333232 2345788999999987777666789999998 34332111212345688999999998666555 4 777
Q ss_pred EEECC
Q psy16005 241 LYRVP 245 (248)
Q Consensus 241 vw~~~ 245 (248)
.++.+
T Consensus 295 ~~~p~ 299 (300)
T 2qc5_A 295 KLNLN 299 (300)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 77654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-13 Score=99.96 Aligned_cols=187 Identities=11% Similarity=0.044 Sum_probs=133.7
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
..+.+++++++|+++++..++.|.+||................+.+++++|+++++++...++.|.+|+..+.... ..
T Consensus 67 ~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~--~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT--VL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE--EC
T ss_pred CCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE--ee
Confidence 4677899999999666656889999997765443222223356899999999998887777899999976554422 11
Q ss_pred ccCCCCCeeEEEEecCCCEEEEEeC-CcEEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEEC-Cce
Q psy16005 98 FHPIGGPIKDIAWSPDNQRMISIVE-NGAKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVEN-GAK 165 (248)
Q Consensus 98 ~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 165 (248)
.......+.+++++++|+.+++... +.+.+|+.... ..+..+++++++.++++...++.|..|+. +..
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 2222346788999999986555543 45666665321 34678899999988888888899999993 333
Q ss_pred eeeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 166 VSSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 166 ~~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
...... ...+..++++|+|+++++...++.|++|++...+.
T Consensus 225 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 225 STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 333222 24578999999999888888899999999876554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-13 Score=102.86 Aligned_cols=218 Identities=13% Similarity=0.101 Sum_probs=142.4
Q ss_pred CCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeee-------ecCCcceEEEEECcCCcEEEEEcc-----CCeE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIY-------TEHSCAVNVAKYSPSGFYIASGDI-----SGKV 82 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i 82 (248)
..+..++++|+|+.+++.. ++.+.||.+.+++.. .+ ..+-..+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5788999999999988853 342555555455433 12 134467899999999886666543 5789
Q ss_pred EEEECCCCceeeeeecc----CCCCCeeEEEEecCCCEEEEEe-----CCcEEEEEccCC--------------------
Q psy16005 83 RIWDTVNKEHILKNEFH----PIGGPIKDIAWSPDNQRMISIV-----ENGAKVSSLPID-------------------- 133 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-----~~~~~i~~~~~~-------------------- 133 (248)
.+||+.+++.+....+. .+...+..+++++++..++.+. ..++.+|++...
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988754434432 1234568999998765555543 234566765311
Q ss_pred -------------------CCCceeEeCCCCCEEEEEcCCC-eEEEEECCc----e---------eeeecccCCCceEEE
Q psy16005 134 -------------------YEPSSISLDHEHGLVAVGGADS-KISIVENGA----K---------VSSLPIDYEPSSISL 180 (248)
Q Consensus 134 -------------------~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~----~---------~~~~~~~~~~~~~~~ 180 (248)
..+..++++|+++.++++...+ .+..++... . +........+..+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 1135688899998777766554 666665210 0 011112235678999
Q ss_pred cCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 181 DHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 181 s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
+++|.++++...++.|.+||..+++........+...+.+++|.++++++++.+..
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred CCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 99999988888899999999855553222221224568999999999888777643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-13 Score=103.22 Aligned_cols=205 Identities=10% Similarity=-0.043 Sum_probs=133.2
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEECCCCceeeeeeccCC-----CC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNKEHILKNEFHPI-----GG 103 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-----~~ 103 (248)
.|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.+||+.+++.+....+.+. ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8899999999999988755556 799999999998886 368899999999987654444311 13
Q ss_pred CeeEEEEecCCCEEEEEeCC---cEEE--EEccC------CCC--------CceeEeCCCCCE-----------------
Q psy16005 104 PIKDIAWSPDNQRMISIVEN---GAKV--SSLPI------DYE--------PSSISLDHEHGL----------------- 147 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~---~~~i--~~~~~------~~~--------~~~~~~~~~~~~----------------- 147 (248)
....++++|||++++++... .+.+ +|... ... ..-+..++++++
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 46789999999999998742 3455 55422 100 000111122221
Q ss_pred --------------------EEEEcCCCeEEEEECCc----eeeeecc-----------cCCCceEEEcCCCCEEEEEcC
Q psy16005 148 --------------------VAVGGADSKISIVENGA----KVSSLPI-----------DYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 148 --------------------~~~~~~~~~i~~~~~~~----~~~~~~~-----------~~~~~~~~~s~~~~~l~~~~~ 192 (248)
++..+. +.+.+.|... .+..+.. ......++++|+++.++++..
T Consensus 205 ~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 205 QCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred EeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence 122222 4455555211 1111111 111223789999998887643
Q ss_pred ---------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE-EEEEc-CCCeEEEEECCCCC
Q psy16005 193 ---------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY-LVASD-AHRKVVLYRVPDFE 248 (248)
Q Consensus 193 ---------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~d~~i~vw~~~~~~ 248 (248)
++.+.++|+.+.+.+..+..+. ....++|+|||++ +++.. .++.|.++|+.++|
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2356799999998876665443 5899999999985 55555 58999999998874
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-13 Score=100.66 Aligned_cols=213 Identities=12% Similarity=0.114 Sum_probs=138.4
Q ss_pred CCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 18 GQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
.......|+|+|+.|+.. . ++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. ++....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 446688999999955444 3 789999987 454 34455566778999999999977766667889999986 442211
Q ss_pred e-eccC-CCCCeeEEEEecCCCEEEE----EeC------------CcEEEEEccCC----------CCCceeEeCCCCCE
Q psy16005 96 N-EFHP-IGGPIKDIAWSPDNQRMIS----IVE------------NGAKVSSLPID----------YEPSSISLDHEHGL 147 (248)
Q Consensus 96 ~-~~~~-~~~~v~~~~~~~~~~~l~~----~~~------------~~~~i~~~~~~----------~~~~~~~~~~~~~~ 147 (248)
. ...+ ....+..++++++|+..++ +.. ....+|.++.. ..+..++++|+++.
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~ 201 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQT 201 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSE
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCE
Confidence 1 1111 1234678999999997775 221 12344444321 23456889999997
Q ss_pred EEEEcCC------CeEEEEEC-Cceee---ee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCC
Q psy16005 148 VAVGGAD------SKISIVEN-GAKVS---SL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHL 215 (248)
Q Consensus 148 ~~~~~~~------~~i~~~~~-~~~~~---~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 215 (248)
++++... +.|..|+. ...+. .+ . ....+..++++++|++ .+++.++ |.+|+.. ++....... +
T Consensus 202 lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~-g~~~~~~~~-~- 276 (305)
T 3dr2_A 202 LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD-GQLLGHIPT-P- 276 (305)
T ss_dssp EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT-SCEEEEEEC-S-
T ss_pred EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC-CCEEEEEEC-C-
Confidence 7766554 68888882 11111 11 1 2344678999999994 4444454 9999984 444333332 2
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
..+.+++|+|+++.|+.++.++.
T Consensus 277 ~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 277 GTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp SCCCEEEECTTSCEEEEEETTEE
T ss_pred CceeEEEEeCCCCEEEEEcCCeE
Confidence 25889999999988887776543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-12 Score=96.85 Aligned_cols=209 Identities=13% Similarity=0.050 Sum_probs=138.0
Q ss_pred cEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeee
Q psy16005 20 PIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (248)
..+..|+|++..++..+ ++.|..||..+++.. .+. ....+.+++|+|+++++++. . ..|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 46789999866555543 789999998876543 232 35679999999999877764 3 459999998876432222
Q ss_pred ccC--CCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccC---------CCCCceeEeCCCCCEEE-EEcCCCeEEEE
Q psy16005 98 FHP--IGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPI---------DYEPSSISLDHEHGLVA-VGGADSKISIV 160 (248)
Q Consensus 98 ~~~--~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 160 (248)
... ....+..++++|+|+.+++.... ...+|.+.. ...+..++++|+++.++ +...++.|.+|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~ 206 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 206 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence 111 12358899999999876655421 234554431 12345778999998664 44567899999
Q ss_pred EC----C-ce-----eeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEc-CCCc
Q psy16005 161 EN----G-AK-----VSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFS-PSNE 228 (248)
Q Consensus 161 ~~----~-~~-----~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~ 228 (248)
+. + .. ...+. ....+..++++++|.+.++...++.|..||. +++...... .+...+++++|+ |+++
T Consensus 207 d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 207 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-VPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-CSCSBEEEEEEESTTSC
T ss_pred EcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-CCCCCcEEEEEecCCCC
Confidence 83 3 21 11111 1234678999999987777666788999998 454433333 344569999998 8887
Q ss_pred EEEEEc
Q psy16005 229 YLVASD 234 (248)
Q Consensus 229 ~l~~~~ 234 (248)
.|+.++
T Consensus 285 ~L~vt~ 290 (326)
T 2ghs_A 285 RLLVTS 290 (326)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 775543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-12 Score=99.48 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=137.1
Q ss_pred C--CCCCEEEEeC--CcEEEEEecCCC----ceeeeee------c-CCcceEEEEECcCCcEEEEEccC------CeEEE
Q psy16005 26 D--PKGKNFLYTN--GNSVIIRNIENP----AISDIYT------E-HSCAVNVAKYSPSGFYIASGDIS------GKVRI 84 (248)
Q Consensus 26 s--~~~~~l~~~~--~~~v~v~~~~~~----~~~~~~~------~-~~~~v~~~~~s~~~~~l~~~~~d------g~i~i 84 (248)
+ +++++|++.+ ++.|+++|+.+. +..+.+. . ....-..+..+|+| +++++..+ |.|.+
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 7 8899988875 789999998754 4444442 1 11245567888999 66666554 78999
Q ss_pred EECCCCceeeeeeccCCC-CCeeEEEEecCCCEEEEEe--------------------CCcEEEEEccCC----------
Q psy16005 85 WDTVNKEHILKNEFHPIG-GPIKDIAWSPDNQRMISIV--------------------ENGAKVSSLPID---------- 133 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~--------------------~~~~~i~~~~~~---------- 133 (248)
.|.++.+.+......... .--+.+.|+|+++.++++. .+.+.+|++...
T Consensus 169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 999998865433333222 2345688899999888885 466789988532
Q ss_pred --CCCceeEe--CCCCCEEEEEc------CCCeEEEEE--CCce--eee--ecc-----------------cCCCceEEE
Q psy16005 134 --YEPSSISL--DHEHGLVAVGG------ADSKISIVE--NGAK--VSS--LPI-----------------DYEPSSISL 180 (248)
Q Consensus 134 --~~~~~~~~--~~~~~~~~~~~------~~~~i~~~~--~~~~--~~~--~~~-----------------~~~~~~~~~ 180 (248)
..+..+.+ +|+++++.++. .+++|.+|. .++. .+. ++. ...+..+.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 12344444 89999877766 455776543 2211 011 110 234688999
Q ss_pred cCCCCEEEEEcC-CCcEEEEEcCCC---CCCCccccc-------C------CcCeEEEEEcCCCcEEEEEc
Q psy16005 181 DHEHGLVAVGGA-DSKVHIYELNNK---SLSPKAELD-------H------LGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 181 s~~~~~l~~~~~-d~~v~i~d~~~~---~~~~~~~~~-------~------~~~v~~~~~s~~~~~l~~~~ 234 (248)
||||++|.++.. .+.|.+||+... +.+.....+ | .+....++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988875 678999998633 222222212 0 01368899999999999887
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-13 Score=113.41 Aligned_cols=213 Identities=12% Similarity=0.150 Sum_probs=133.7
Q ss_pred CCCCCEEEEeC--C----cEEEEEecC---CCceeeee------ecCCcceEEEEECcCCcEEEEEccC-----CeEEEE
Q psy16005 26 DPKGKNFLYTN--G----NSVIIRNIE---NPAISDIY------TEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIW 85 (248)
Q Consensus 26 s~~~~~l~~~~--~----~~v~v~~~~---~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw 85 (248)
+|+|++++... . ..+++.+.. .++....+ .+|...+..++|||||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 38999988764 2 244555544 34333221 1233468899999999999876543 369999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---------------EEEEEccCCC--------------CC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---------------AKVSSLPIDY--------------EP 136 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---------------~~i~~~~~~~--------------~~ 136 (248)
|+.+++.+.. ... ...+..++|+|| +.|+.+..+. +.+|++.... ..
T Consensus 195 dl~tg~~~~~-~~~--~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 195 GVADGKPLAD-ELK--WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRG 270 (741)
T ss_dssp ETTTCCEEEE-EEE--EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred ECCCCCCCCc-cCC--CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEE
Confidence 9999885422 111 122357899999 9888887432 4456653211 23
Q ss_pred ceeEeCCCCCEEEEEcCC-----CeEEEEE--CCc-e-eeeecccC-CCceEEEcCCCCEEEEEcC----CCcEEEEEcC
Q psy16005 137 SSISLDHEHGLVAVGGAD-----SKISIVE--NGA-K-VSSLPIDY-EPSSISLDHEHGLVAVGGA----DSKVHIYELN 202 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-----~~i~~~~--~~~-~-~~~~~~~~-~~~~~~~s~~~~~l~~~~~----d~~v~i~d~~ 202 (248)
..+.++|+|++++....+ ..|++|| .+. . ...+.... ..... ++|+|+.|+..+. ++.|.+||+.
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS 349 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 467899999988876644 3788988 331 2 33343222 23333 4589998887765 3459999998
Q ss_pred CCC-CCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 203 NKS-LSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 203 ~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++. ....+...+...+..++|+ ++.++++...|+..+||.+
T Consensus 350 ~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 350 GSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp SSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 752 2223333445557778887 5667788888888777754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-12 Score=97.94 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=147.5
Q ss_pred EEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEE
Q psy16005 23 LGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWD 86 (248)
Q Consensus 23 ~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd 86 (248)
....|+++.++..+ ++.|.++|..+++.+..+..-..+ . ++++|||+++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 45578999888874 469999999999999888755555 4 99999999888775 357899999
Q ss_pred CCCCceeeeeeccC-----CCCCeeEEEEecCCCEEEEEeC---CcEEEEEccCCCCCceeE-------eCCCCCEEEEE
Q psy16005 87 TVNKEHILKNEFHP-----IGGPIKDIAWSPDNQRMISIVE---NGAKVSSLPIDYEPSSIS-------LDHEHGLVAVG 151 (248)
Q Consensus 87 ~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~ 151 (248)
..+.+.+....+.. .......++|+|||++++++.. +.+.++|+.....+..+. +....+.+++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 99988664444432 0135678999999999998863 346788876554433332 22234556677
Q ss_pred cCCCeEEEEECC---ceeeeeccc-----CCC-ceEEEc-CCCCEEEEEcCCCcEEEEEcCCCCC--CCccc--------
Q psy16005 152 GADSKISIVENG---AKVSSLPID-----YEP-SSISLD-HEHGLVAVGGADSKVHIYELNNKSL--SPKAE-------- 211 (248)
Q Consensus 152 ~~~~~i~~~~~~---~~~~~~~~~-----~~~-~~~~~s-~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~-------- 211 (248)
+.||.+.+.+.+ +........ ..+ ...+|. ++|++++ .+.+|.|++.|+.+... .....
T Consensus 196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccc
Confidence 778888777732 222211111 111 224554 6776555 45589999999976642 21111
Q ss_pred cc-CCcCeEEEEEcCCCcEEEEEcC----------CCeEEEEECCCCC
Q psy16005 212 LD-HLGPVTDCSFSPSNEYLVASDA----------HRKVVLYRVPDFE 248 (248)
Q Consensus 212 ~~-~~~~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~ 248 (248)
.+ ..+....++++|+++.++.... .+.|.+.|+.+++
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 01 1234456788999998877642 2579999998875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-12 Score=94.69 Aligned_cols=187 Identities=9% Similarity=0.022 Sum_probs=126.4
Q ss_pred CCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--
Q psy16005 57 HSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID-- 133 (248)
Q Consensus 57 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~-- 133 (248)
...-..+..|+|+ +.++++...++.|..||..+++.. ... ....+.+++++++|+++ ++..+++.+++....
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~~~~i~~~~dG~l~-v~~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT---MDAPVSSVALRQSGGYV-ATIGTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE---CSSCEEEEEEBTTSSEE-EEETTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe---CCCceEEEEECCCCCEE-EEECCeEEEEECCCCcE
Confidence 3344568899995 556667777899999999887642 122 34678999999999954 455777777775321
Q ss_pred ------------CCCceeEeCCCCCEEEEEcC-----------CCeEEEEEC-CceeeeecccCCCceEEEcCCCCEEEE
Q psy16005 134 ------------YEPSSISLDHEHGLVAVGGA-----------DSKISIVEN-GAKVSSLPIDYEPSSISLDHEHGLVAV 189 (248)
Q Consensus 134 ------------~~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~ 189 (248)
..+..+.++|+|+++++... .+.|+.++. ++..........++.++|+|+++.|++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 12456889999997775422 245666663 333332333345688999999986654
Q ss_pred -EcCCCcEEEEEcC--CCCCCC--cc--cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 190 -GGADSKVHIYELN--NKSLSP--KA--ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 190 -~~~d~~v~i~d~~--~~~~~~--~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+.++.|..|++. ++.... .+ ...+...+..++++++|++.++...++.|..||.++++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 4567889999973 443211 11 11233567899999999888777778899999988764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-12 Score=96.41 Aligned_cols=189 Identities=15% Similarity=0.101 Sum_probs=129.9
Q ss_pred CcceEEEEECcCCcEEEE-------EccCCeEEEEECCCCceeeeeec---cCCCCCeeEEEEecC-CCEEEEEeCCcEE
Q psy16005 58 SCAVNVAKYSPSGFYIAS-------GDISGKVRIWDTVNKEHILKNEF---HPIGGPIKDIAWSPD-NQRMISIVENGAK 126 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~~~~~ 126 (248)
-....+++|+++++++++ +..++.|.+||..+++... ... .++...+.+++++++ ++.+++...+++.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 345678999999988877 5778999999988776431 111 113467899999999 7766666566777
Q ss_pred EEEccC--------------CCCCceeEeCCCCCEEEEEcCC---------------CeEEEEEC-CceeeeecccCCCc
Q psy16005 127 VSSLPI--------------DYEPSSISLDHEHGLVAVGGAD---------------SKISIVEN-GAKVSSLPIDYEPS 176 (248)
Q Consensus 127 i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~~~-~~~~~~~~~~~~~~ 176 (248)
+|+... ...+..++++++++++++...+ +.|..++. ++..........+.
T Consensus 96 ~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 175 (314)
T 1pjx_A 96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN 175 (314)
T ss_dssp EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE
T ss_pred EEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc
Confidence 776430 0236688899999888876654 56777874 33322223334567
Q ss_pred eEEEc----CCCCEEEEE-cCCCcEEEEEcC-CCCCC----CcccccCC-cCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 177 SISLD----HEHGLVAVG-GADSKVHIYELN-NKSLS----PKAELDHL-GPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 177 ~~~~s----~~~~~l~~~-~~d~~v~i~d~~-~~~~~----~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.++++ |+++.++++ ..++.|.+||.. +++.. ......+. ..+..++++++|+++++...++.|.+||.+
T Consensus 176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 89999 999765554 567899999986 33311 01111232 567889999999988887778899999987
Q ss_pred CC
Q psy16005 246 DF 247 (248)
Q Consensus 246 ~~ 247 (248)
++
T Consensus 256 ~g 257 (314)
T 1pjx_A 256 GG 257 (314)
T ss_dssp CB
T ss_pred CC
Confidence 54
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-11 Score=91.08 Aligned_cols=222 Identities=9% Similarity=0.018 Sum_probs=140.7
Q ss_pred EeCCCCCEEEEeC--Cc----EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEEC
Q psy16005 24 GGDPKGKNFLYTN--GN----SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDT 87 (248)
Q Consensus 24 ~~s~~~~~l~~~~--~~----~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~ 87 (248)
...|+++.++..+ +. .|.++|..+++.+..+.....+ .++++||+++++.+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3457887777654 22 8899999999988777644444 999999999998875 3678999999
Q ss_pred CCCceeeeeecc-C----CCCCeeEEEEecCCCEEEEEeC---CcEEEEEccCCCCCce-------eEeCCCC-CEEEEE
Q psy16005 88 VNKEHILKNEFH-P----IGGPIKDIAWSPDNQRMISIVE---NGAKVSSLPIDYEPSS-------ISLDHEH-GLVAVG 151 (248)
Q Consensus 88 ~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~-------~~~~~~~-~~~~~~ 151 (248)
.+.+.+....+. . +......++|+|||++|+++.. +.+.+++ .....+.. +.+.|++ +.+++.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLL 183 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEE
Confidence 887755433332 0 0134568999999999998874 3367777 54433222 2233443 455666
Q ss_pred cCCCeEEEEEC-Cceeeeec-----ccCCC--ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC--Ccccc--------c
Q psy16005 152 GADSKISIVEN-GAKVSSLP-----IDYEP--SSISLDHEHGLVAVGGADSKVHIYELNNKSLS--PKAEL--------D 213 (248)
Q Consensus 152 ~~~~~i~~~~~-~~~~~~~~-----~~~~~--~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~~--------~ 213 (248)
+.|+.+..++. ++...... ....+ ....+.+++..++..+..+.+.+.|+.+.... ..+.. +
T Consensus 184 ~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~ 263 (373)
T 2mad_H 184 CAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred cCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccc
Confidence 78888888885 33332211 11111 22455666665555557789999999765321 11100 0
Q ss_pred -CCcCeEEEEEcCCCcEEEEEcC----------CCeEEEEECCCCC
Q psy16005 214 -HLGPVTDCSFSPSNEYLVASDA----------HRKVVLYRVPDFE 248 (248)
Q Consensus 214 -~~~~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~ 248 (248)
.......+.++|+++.++.+.. ++.|.++|+.+++
T Consensus 264 ~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~ 309 (373)
T 2mad_H 264 WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ 309 (373)
T ss_pred eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE
Confidence 1223445789999988877643 3589999998764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9e-12 Score=96.98 Aligned_cols=220 Identities=14% Similarity=0.102 Sum_probs=143.5
Q ss_pred CCCCEEEEeC--C----cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEEEEECCCC
Q psy16005 27 PKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVRIWDTVNK 90 (248)
Q Consensus 27 ~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~ 90 (248)
|+++.++..+ + +.|.++|..+++.+..+..-..+ .+.++||+++++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 5677666654 3 79999999999999888755555 899999999888876 3678999999998
Q ss_pred ceeeeeeccCC-----CCCeeEEEEecCCCEEEEEeCC---cEEEEEccCCCCCceeEe------CCC-CCEEEEEcCCC
Q psy16005 91 EHILKNEFHPI-----GGPIKDIAWSPDNQRMISIVEN---GAKVSSLPIDYEPSSISL------DHE-HGLVAVGGADS 155 (248)
Q Consensus 91 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~---~~~i~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~ 155 (248)
+.+....+.+. ......++|+|||++++++... .+.+.|+.....+..+.. .|+ ...+++.+.||
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 86644444310 1345678999999999998742 356777655443333322 222 24555566677
Q ss_pred eEEEEEC--Cceee----eecccCCC--ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC--Cccc--------cc-CCc
Q psy16005 156 KISIVEN--GAKVS----SLPIDYEP--SSISLDHEHGLVAVGGADSKVHIYELNNKSLS--PKAE--------LD-HLG 216 (248)
Q Consensus 156 ~i~~~~~--~~~~~----~~~~~~~~--~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~--~~~~--------~~-~~~ 216 (248)
.+.+.+. ++... .+.....+ ..+.+++++..++..+..+.|.+.|....... .... .+ ...
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 7766663 22221 11111111 34577999888777788899999999654321 1100 00 112
Q ss_pred CeEEEEEcCCCcEEEEEcC----------CCeEEEEECCCCC
Q psy16005 217 PVTDCSFSPSNEYLVASDA----------HRKVVLYRVPDFE 248 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~ 248 (248)
....++++|+++.++.... ++.|.+.|+.+++
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 2234689999987776632 3579999998875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-11 Score=92.26 Aligned_cols=182 Identities=10% Similarity=-0.016 Sum_probs=123.1
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---EEEEEcc----
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---AKVSSLP---- 131 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~i~~~~---- 131 (248)
.....++|+++++++++...++.|++||..++.... .... ..... ++|+++++.|+++..++ +.+++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~--~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT--VHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE--EEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE--eecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 357899999999988887778999999998776432 2222 23334 99999999988887644 3333321
Q ss_pred ----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC-ceeeee----cc---cCCCc-eEEEcCC-CCEEEEEc
Q psy16005 132 ----------IDYEPSSISLDHEHGLVAVGGADSKISIVENG-AKVSSL----PI---DYEPS-SISLDHE-HGLVAVGG 191 (248)
Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~----~~---~~~~~-~~~~s~~-~~~l~~~~ 191 (248)
....+..++++|++..|+++..++.|+.|+.. .....+ .. ...+. .++++|+ +.++++-.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 22446788999955555557778899999932 222222 11 11234 9999995 55556666
Q ss_pred CCCcEEEEEcCCCCCCCcccccC---------------CcCeEEEEEcCCCcEEEEEc-CCCeEEEEECCCC
Q psy16005 192 ADSKVHIYELNNKSLSPKAELDH---------------LGPVTDCSFSPSNEYLVASD-AHRKVVLYRVPDF 247 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~ 247 (248)
.++.|+.|+...... .. .++ -.....++++|+|+++++-. .++.|+.|++.++
T Consensus 287 ~~~~I~~~~~~g~~~--~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 287 NLSSVYKITPDGECE--WF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TTTEEEEECTTCCEE--EE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CCCEEEEEecCCCEE--EE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 788899998764311 11 111 23478999999999777777 7899999997665
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-10 Score=88.31 Aligned_cols=180 Identities=10% Similarity=-0.000 Sum_probs=121.8
Q ss_pred ceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC-----
Q psy16005 60 AVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----- 133 (248)
Q Consensus 60 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----- 133 (248)
...++.|+|+ +.++++...++.|..||..+++.. ... ....+.+++|+++|+++++. .+++.+|+....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~---~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA---LPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE---CSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE---CCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEE
Confidence 3467889997 456667777899999999877532 122 24679999999999877754 667777775321
Q ss_pred ---------CCCceeEeCCCCCEEEEEcC------CCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEE-cCCCcEE
Q psy16005 134 ---------YEPSSISLDHEHGLVAVGGA------DSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVG-GADSKVH 197 (248)
Q Consensus 134 ---------~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~ 197 (248)
..+..+.++|+|+++++... .+.|..++.++..........++.++|+|+++.++++ +.++.|.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 12457789999997765532 3567777743322222222346789999999876555 5578899
Q ss_pred EEEcC--CC-CCCC--ccc--ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 198 IYELN--NK-SLSP--KAE--LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 198 i~d~~--~~-~~~~--~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+||+. ++ +... .+. ......+..++++++|.++++...++.|.+|+.
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 99986 55 3211 111 113345788999999987777766788999987
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=99.03 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=145.1
Q ss_pred CCCCEEEEeC--CcEEEEEecCCCceeeeeec-CCcceEEEEE-C-cCCcEEEEEc------------------cCCeEE
Q psy16005 27 PKGKNFLYTN--GNSVIIRNIENPAISDIYTE-HSCAVNVAKY-S-PSGFYIASGD------------------ISGKVR 83 (248)
Q Consensus 27 ~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~-s-~~~~~l~~~~------------------~dg~i~ 83 (248)
+||++++... ++.|.+.|+++.+....+.- .......+++ + |++++++.++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 4899988875 67899999999998775542 2345788888 5 8999998874 346899
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----------------EEEEEccCCCCCceeEeCCCCCE
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----------------AKVSSLPIDYEPSSISLDHEHGL 147 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~ 147 (248)
+.|.++.+........+ ....++++|||+++++++.+. +.+.+..... ...++|+.
T Consensus 179 vID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~-----~~v~~Gk~ 250 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE-----KAIAAGDY 250 (595)
T ss_dssp EEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-----HHHHHTCS
T ss_pred EEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-----EeccCCCe
Confidence 99999887655444433 356788999999999998654 2333322111 12334443
Q ss_pred EEEEcCCCeEEEEECCc----e-eeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCC------C----Cccc
Q psy16005 148 VAVGGADSKISIVENGA----K-VSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSL------S----PKAE 211 (248)
Q Consensus 148 ~~~~~~~~~i~~~~~~~----~-~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~------~----~~~~ 211 (248)
... +.+.+.|..+ . +..++....+.++.++|||+++++++ .+.+|.++|+.+.+. . ....
T Consensus 251 ~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 251 QEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp EEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 333 4589999443 4 56777888899999999999887776 578999999986521 0 0011
Q ss_pred ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 212 LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 212 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..-......++|+|+|...++.--|+.|.+||+++
T Consensus 327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 12335679999999994344556789999999754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=98.13 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=133.1
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecC-------CcceEEEEECc
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEH-------SCAVNVAKYSP 68 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~-------~~~v~~~~~s~ 68 (248)
+++..++.+.. + .+.++|||++++.++ ++.|.+||+.+++.+..+... ......++++|
T Consensus 57 ~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 57 VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 45556665443 3 799999999998874 578999999999999887643 12356899999
Q ss_pred CCcEEEEEcc--CCeEEE--EECCCCceeeeeeccCC-----CCCeeEEEEecC--------------------------
Q psy16005 69 SGFYIASGDI--SGKVRI--WDTVNKEHILKNEFHPI-----GGPIKDIAWSPD-------------------------- 113 (248)
Q Consensus 69 ~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~-------------------------- 113 (248)
||++++++.. +..+.+ +|+.+- ......+. .+.-..++++++
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~tv---~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i 210 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASDD---QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ 210 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEEE---EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred CCCEEEEEccCCCCeEEEEEEchhhc---eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence 9999998864 457888 888651 11111000 000001122222
Q ss_pred -----------CCEEEEEeCCcEEEEEccCC----------------------CCCceeEeCCCCCEEEEEcC-------
Q psy16005 114 -----------NQRMISIVENGAKVSSLPID----------------------YEPSSISLDHEHGLVAVGGA------- 153 (248)
Q Consensus 114 -----------~~~l~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~------- 153 (248)
+..++..+.+.+.+.++... .....+.++++++.+.++..
T Consensus 211 ~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 211 NCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL 290 (368)
T ss_dssp CBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred eCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence 22222222222333343211 11122778999987776533
Q ss_pred --CCeEEEEE--CCceeeeecccCCCceEEEcCCCCE-EEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 154 --DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGL-VAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 154 --~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
++.+.++| +.+.+..++....+..++++|||+. +++.. .++.|.++|+.+++.+.....+ .....+++.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred ccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 23566999 5677788887778999999999984 55555 5899999999999887655422 3345666544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-10 Score=88.98 Aligned_cols=183 Identities=12% Similarity=0.007 Sum_probs=128.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecC------CcceEEEEECcCC-cEEEEEc---c
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEH------SCAVNVAKYSPSG-FYIASGD---I 78 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~~~~---~ 78 (248)
.+...+..++++++|+++++-. ++.|.+||+.+++..+.+... ...+..++++|++ ..+++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3556899999999998666543 479999999988876655422 2346889999864 4445544 6
Q ss_pred CCeEEEEECCCCceeeeeeccCC-----------------------------CCCeeEEEEecCCCEEEEEeCCcEEEEE
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPI-----------------------------GGPIKDIAWSPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~~~~~~~~i~~ 129 (248)
++.|.+||+.+++... .+..| ...+..++|+||++.|+++...+.++|.
T Consensus 144 ~~~i~v~d~~~g~~~r--~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 144 KAALIRVDLQTGLAAR--VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR 221 (343)
T ss_dssp GCEEEEEETTTCCEEE--ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred CCeEEEEECCCCCEEE--EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence 7899999998776432 11111 1236889999999999998877767776
Q ss_pred ccC----------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cceeeeecc--cCCCceEEEcCC
Q psy16005 130 LPI----------------------DYEPSSISLDHEHGLVAVGGADSKISIVEN--GAKVSSLPI--DYEPSSISLDHE 183 (248)
Q Consensus 130 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~--~~~~~~~~~s~~ 183 (248)
++. ...+..++++++++++++...++.|..||. ++....... ...+..++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred EEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 531 124567999999999999999999999996 433222222 334789999999
Q ss_pred CCEEEEEcCCCcEEEE
Q psy16005 184 HGLVAVGGADSKVHIY 199 (248)
Q Consensus 184 ~~~l~~~~~d~~v~i~ 199 (248)
+.++++.+..+.+.+|
T Consensus 302 g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 302 GYLYFDCNQLHHSAPL 317 (343)
T ss_dssp SCEEEEECCGGGSGGG
T ss_pred CcEEEEeCcccccccc
Confidence 8877777655444333
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-11 Score=99.19 Aligned_cols=216 Identities=11% Similarity=0.064 Sum_probs=140.4
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecC-C----cceEE-EEECcCCcEEEEEcc------CCeEEEEECCCCceeee
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEH-S----CAVNV-AKYSPSGFYIASGDI------SGKVRIWDTVNKEHILK 95 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-~----~~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 95 (248)
+..++++. ++.|+.+|..+++.+-.+... . ..+.+ ... .+..+++++. +|.|+.+|..+++.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 44565554 999999999999988776543 1 11211 111 2345555543 68999999999997765
Q ss_pred eeccCCC------------------------------CCeeEEEEecCCCEEEEEeCCc--------------------E
Q psy16005 96 NEFHPIG------------------------------GPIKDIAWSPDNQRMISIVENG--------------------A 125 (248)
Q Consensus 96 ~~~~~~~------------------------------~~v~~~~~~~~~~~l~~~~~~~--------------------~ 125 (248)
....... .....++++|++..++.+..++ +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 5442211 0113578888888877765442 2
Q ss_pred ---------EEEEccCCC----------CCceeEeCCCC---CEEEEEcCCCeEEEEE--CCceeeeecccCC-------
Q psy16005 126 ---------KVSSLPIDY----------EPSSISLDHEH---GLVAVGGADSKISIVE--NGAKVSSLPIDYE------- 174 (248)
Q Consensus 126 ---------~i~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~------- 174 (248)
.+|.++... .+..+....+| ..++.++.+|.++++| +++.+...+....
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 345443211 12222222356 6788899999999999 6777665542210
Q ss_pred -----------------------------CceEEEcCCCCEEEEEcC---------------------------------
Q psy16005 175 -----------------------------PSSISLDHEHGLVAVGGA--------------------------------- 192 (248)
Q Consensus 175 -----------------------------~~~~~~s~~~~~l~~~~~--------------------------------- 192 (248)
-..++++|++.++++...
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 025788998888877543
Q ss_pred ----------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 ----------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 ----------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.|.|..||+.+++..-... +..++....++.++..++.++.||.+++||.++++
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 2779999999998754443 33445555667788888889999999999999986
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-10 Score=81.53 Aligned_cols=203 Identities=9% Similarity=0.002 Sum_probs=128.9
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCc-ceEEEEECcCCcEEEEEccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
+++..++.........+.|+||+.++++.+ ++.|.++|+.+++....+..... ....+++.. ++..++.-.++.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEE
Confidence 456667654444568999999975555543 57999999999998887652221 223455542 2444455567899
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.++|..+.+.+...... .. ....+++||+.++++ ..++.+.++|
T Consensus 89 ~viD~~t~~v~~~i~~g--~~--~g~glt~Dg~~l~vs-------------------------------~gs~~l~viD~ 133 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQ--MK--DGWGLATDGKILYGS-------------------------------DGTSILYEIDP 133 (266)
T ss_dssp EEEETTTTEEEEEEECC--SS--SCCEEEECSSSEEEE-------------------------------CSSSEEEEECT
T ss_pred EEEECCCCcEEEEEECC--CC--CeEEEEECCCEEEEE-------------------------------CCCCeEEEEEC
Confidence 99999988765443332 11 123355566655443 2345666666
Q ss_pred -CCceeeeecccC------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc------------CCcCeEEEE
Q psy16005 162 -NGAKVSSLPIDY------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD------------HLGPVTDCS 222 (248)
Q Consensus 162 -~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~v~~~~ 222 (248)
+.+....++... .++.+.+. +|+..+....++.|.+.|..+++.+.....+ .......++
T Consensus 134 ~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa 212 (266)
T 2iwa_A 134 HTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA 212 (266)
T ss_dssp TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE
T ss_pred CCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE
Confidence 334444444321 24677777 6755555556789999999999876554332 113568999
Q ss_pred EcCCCcEE-EEEcCCCeEEEEECCC
Q psy16005 223 FSPSNEYL-VASDAHRKVVLYRVPD 246 (248)
Q Consensus 223 ~s~~~~~l-~~~~~d~~i~vw~~~~ 246 (248)
|+|+++.+ +++...+++.+.++..
T Consensus 213 ~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 213 WDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EcCCCCEEEEECCCCCeEEEEEEec
Confidence 99998755 5555678888887753
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-14 Score=109.09 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=96.2
Q ss_pred CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCee
Q psy16005 28 KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106 (248)
Q Consensus 28 ~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (248)
++..+++++ ++.|+.||..+|+....+.. +.+.+..+..++..+++++.||.|+.||.++++.+....... ...+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-PELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH-HHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC-ccccc
Confidence 456666665 89999999999999877765 455555556677788888999999999998887543322210 00000
Q ss_pred EEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCC
Q psy16005 107 DIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEH 184 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~ 184 (248)
-+| .. ..+..+++++.++.++.|| +++.+..+.... ...++|++
T Consensus 85 ---~sp---------------------------~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~ 130 (369)
T 2hz6_A 85 ---ASP---------------------------CR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPST 130 (369)
T ss_dssp ---TCS---------------------------CC------CCCCEEEEEEEEECCC-----------------------
T ss_pred ---cCc---------------------------eE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccC
Confidence 000 00 0112344455667777777 455555544332 23456678
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCC---cEEEEEcCCCeEEEEECCCCC
Q psy16005 185 GLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSN---EYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 185 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+++++.++.|+.||.++++..-..... ......++++. ..+++++.||.++.||.++|+
T Consensus 131 ~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 131 SLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp --EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 88999999999999999999876544321 11223344432 457778889999999998875
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=95.15 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=100.8
Q ss_pred CeeEEEEecCCCEEEEEeCCcEEEEEcc--------------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECC
Q psy16005 104 PIKDIAWSPDNQRMISIVENGAKVSSLP--------------------IDYEPSSISLDHEHGLVAVGGADSKISIVENG 163 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 163 (248)
.+..+++++....+++++.+++.+|++. .+. +..++| +++.++++ .++.|++||..
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 6889999999999999999999888743 123 667788 88999988 88999999943
Q ss_pred cee---eeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKV---SSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~---~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
... ....+...+..+.+.+. .+++++.||.|.+||++++.... +...|++++|||+| ++.+..||+++
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 221 11223444566665543 38888999999999999877532 45689999999999 67788999999
Q ss_pred EEECCCC
Q psy16005 241 LYRVPDF 247 (248)
Q Consensus 241 vw~~~~~ 247 (248)
+|+.+.+
T Consensus 186 ~~~~~~~ 192 (388)
T 1xip_A 186 SFAWRNG 192 (388)
T ss_dssp EEEEETT
T ss_pred EEcCCCc
Confidence 9987653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-10 Score=85.42 Aligned_cols=176 Identities=11% Similarity=0.049 Sum_probs=120.4
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecC----CcceEEEEECcCCcEEEE----Ecc---------
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEH----SCAVNVAKYSPSGFYIAS----GDI--------- 78 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~~--------- 78 (248)
...+..++++++|+++++.. ++.|.+|+.+ ++........ ...+.+++++|+|++.++ |..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~ 163 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPAD 163 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCC
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccc
Confidence 45688999999999777765 5789999976 5533222111 134678999999998886 432
Q ss_pred ----CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-------cEEEEEccC-------------CC
Q psy16005 79 ----SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-------GAKVSSLPI-------------DY 134 (248)
Q Consensus 79 ----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------~~~i~~~~~-------------~~ 134 (248)
.+.|..+|..+++..... .......++|+||++.|+.+... .+.++++.. ..
T Consensus 164 ~~~~~~~v~~~d~~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 164 PELAHHSVYRLPPDGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CSSSCEEEEEECSSSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred cccCCCeEEEEcCCCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 256777887666543211 23456889999999988777653 456666542 22
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
.+..+.++++|++.++ .. +.|.+|+ .++.+..+..+..+.+++|+|+++.|.+++.++ ++.++
T Consensus 240 ~pdgi~~d~~G~lwv~-~~-~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSS-SG-TGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CCCSEEECTTSCEEEC-CS-SEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCeEEECCCCCEEEe-cC-CcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 3457888999995554 44 4589999 667777777666789999999998888877664 44333
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-09 Score=78.89 Aligned_cols=207 Identities=11% Similarity=-0.032 Sum_probs=130.4
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+..++|+|++..|+.+. .+.|.+++++.......+.........++++|++..| ++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~- 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR- 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-
Confidence 3467899999877777764 7899999987655433332223467899999965545 45556789999998754321
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCC----cEEEEEccC----------CCCCceeEeCCCCC-EEEEEcCCCeEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVEN----GAKVSSLPI----------DYEPSSISLDHEHG-LVAVGGADSKISI 159 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----~~~i~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 159 (248)
............++++|++..|+.+... .+..++++. -..+..+++++++. ++++....+.|..
T Consensus 115 -~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~ 193 (267)
T 1npe_A 115 -VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (267)
T ss_dssp -EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence 1122222467899999977776666543 233444321 12356788998765 4455666788999
Q ss_pred EECC-ceee-eecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 160 VENG-AKVS-SLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 160 ~~~~-~~~~-~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
++.. .... .+.....+..++.. +..|+++. .++.|..+|..+++.......+.......+++.|++.
T Consensus 194 ~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 194 LNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9843 2222 22222345566654 45555544 5689999999988776555433223467788888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-09 Score=77.87 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=131.9
Q ss_pred CCEEEEeCCcEEEEEecCCCcee-----eeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceeeeeeccCCC
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIG 102 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (248)
|++|+.+..+.|+.++++..... ..+......+.+++|++++..|+ +-...+.|..++...+... .......
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDL 78 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEECCC
Confidence 45677776678899998765421 11222234578999999655554 5556789999999765432 2222222
Q ss_pred CCeeEEEEecCCCEEEEEeCCc--EEEEEccC---------C-CCCceeEeCCCCCEEEEEc-C--CCeEEEEE-CCcee
Q psy16005 103 GPIKDIAWSPDNQRMISIVENG--AKVSSLPI---------D-YEPSSISLDHEHGLVAVGG-A--DSKISIVE-NGAKV 166 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~---------~-~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~-~~~~~ 166 (248)
.....+++++++..++.+.... +.+++++. . ..+..++++|++..+..+. . .+.|..++ .+...
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 4678999999877777766433 44444431 1 3567888999655444443 3 46788777 44333
Q ss_pred eeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE-cCCCeEEEE
Q psy16005 167 SSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLY 242 (248)
Q Consensus 167 ~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw 242 (248)
..+. ....+..++++|++..|+++. ..+.|..+|+......... ........++.. +..|+.+ ...+.|..+
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--~~~~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--EGLQYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--ECCCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe--cCCCCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 3332 223578899999877665554 5678999999764432211 122334666654 4455544 456899999
Q ss_pred ECCCCC
Q psy16005 243 RVPDFE 248 (248)
Q Consensus 243 ~~~~~~ 248 (248)
|..+++
T Consensus 235 d~~~g~ 240 (267)
T 1npe_A 235 DLAISK 240 (267)
T ss_dssp ETTTTE
T ss_pred eCCCCC
Confidence 987763
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-09 Score=83.33 Aligned_cols=172 Identities=6% Similarity=0.059 Sum_probs=120.8
Q ss_pred CcEEEEeCCCCCEEEEeC-C------cEEEEEecCCCceeeeeecCCc---ceEEEEECcCCcEEEEEc-----------
Q psy16005 19 QPIVLGGDPKGKNFLYTN-G------NSVIIRNIENPAISDIYTEHSC---AVNVAKYSPSGFYIASGD----------- 77 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~------~~v~v~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~----------- 77 (248)
....+..+|+| .++++. + +.+.++|.++.+.+..+..... .-..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 45567889999 555542 3 6899999999998888762212 234578899999888874
Q ss_pred --------cCCeEEEEECCCCceeeeeeccCCCCCeeEEEE--ecCCCEEEEEeC-----CcEEEEE-------------
Q psy16005 78 --------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAW--SPDNQRMISIVE-----NGAKVSS------------- 129 (248)
Q Consensus 78 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~-----~~~~i~~------------- 129 (248)
...+|.+||+.+++......+.........+.| +|++++++++.+ ....+|.
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 368999999998765544444222234556666 999999988876 4433321
Q ss_pred --ccC-----------------CCCCceeEeCCCCCEEEEEc-CCCeEEEEEC-----Cceeeeeccc------------
Q psy16005 130 --LPI-----------------DYEPSSISLDHEHGLVAVGG-ADSKISIVEN-----GAKVSSLPID------------ 172 (248)
Q Consensus 130 --~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-----~~~~~~~~~~------------ 172 (248)
+.. ...+..+.+++++++|.++. ..+.|.+||. .+.+..+...
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 111 24467889999999877665 4689999982 2344455443
Q ss_pred ---CCCceEEEcCCCCEEEEEc
Q psy16005 173 ---YEPSSISLDHEHGLVAVGG 191 (248)
Q Consensus 173 ---~~~~~~~~s~~~~~l~~~~ 191 (248)
..+..++++|||++|+++.
T Consensus 378 ~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSSEEEEEC
T ss_pred cCCCCCCEEEEcCCCCEEEEEc
Confidence 1479999999999999988
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-10 Score=94.10 Aligned_cols=217 Identities=12% Similarity=0.111 Sum_probs=134.3
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecC--CcceEEEEECc---CCcEEEEEc------cCCeEEEEECCCCceeeee
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEH--SCAVNVAKYSP---SGFYIASGD------ISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--~~~v~~~~~s~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 96 (248)
+..++++. ++.|+.+|..+|+.+-.+... ......+..+| ++. ++.++ .+|.|..||.++++.+...
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 44555655 999999999999987665432 11111112223 444 44443 3689999999999977554
Q ss_pred eccCCC-----------------------------CCeeEEEEecCCCEEEEEeCCc--------------------EE-
Q psy16005 97 EFHPIG-----------------------------GPIKDIAWSPDNQRMISIVENG--------------------AK- 126 (248)
Q Consensus 97 ~~~~~~-----------------------------~~v~~~~~~~~~~~l~~~~~~~--------------------~~- 126 (248)
...... ..-..++++|++..++.+..++ +.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 421110 1112577888877777776543 33
Q ss_pred --------EEEccCCCC----------CceeEeCCCCC---EEEEEcCCCeEEEEE--CCceeeeecccC----------
Q psy16005 127 --------VSSLPIDYE----------PSSISLDHEHG---LVAVGGADSKISIVE--NGAKVSSLPIDY---------- 173 (248)
Q Consensus 127 --------i~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~i~~~~--~~~~~~~~~~~~---------- 173 (248)
+|..+.... +.......+++ .++.++.+|.++++| +++.+...+...
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 343332100 00111112343 678889999999999 676653322110
Q ss_pred ------------------------------CCceEEEcCCCCEEEEEcC-------------------------------
Q psy16005 174 ------------------------------EPSSISLDHEHGLVAVGGA------------------------------- 192 (248)
Q Consensus 174 ------------------------------~~~~~~~s~~~~~l~~~~~------------------------------- 192 (248)
.-..++++|+..++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 0123789998887776532
Q ss_pred --------------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 --------------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 --------------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|.|..||+.+++..-... +..++..-.++..+..++.++.||.++.||.++||
T Consensus 440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcccccCCCCCCCcceeEEEEECCCCCeEeEcc--CCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 3779999999998754443 22333444566678889999999999999999986
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=96.81 Aligned_cols=184 Identities=10% Similarity=0.133 Sum_probs=116.4
Q ss_pred cCCcceEEEEECcCCcEEEEE-----ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc------
Q psy16005 56 EHSCAVNVAKYSPSGFYIASG-----DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG------ 124 (248)
Q Consensus 56 ~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------ 124 (248)
++...+..++|||||++||.+ +....|++||+.+++.+.. .+.. .....++|+ |++.|+.+..+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCcccccc
Confidence 345578899999999988853 2235799999999885432 2221 113567899 999999887552
Q ss_pred --------EEEEEccCCC---------------CCceeEeCCCCCEEEEEc----CCCeEEEEEC--Cc-eeeeecccCC
Q psy16005 125 --------AKVSSLPIDY---------------EPSSISLDHEHGLVAVGG----ADSKISIVEN--GA-KVSSLPIDYE 174 (248)
Q Consensus 125 --------~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~----~~~~i~~~~~--~~-~~~~~~~~~~ 174 (248)
+.+|++.... ....+.++|++++++... ....++++|. +. ....+.....
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 4556553211 124577899999876543 2358899983 21 3334433333
Q ss_pred CceEEEcCCCCEEEEEc-C---CCcEEEEEcCCCCC--CCcccccCCcCeEEEEEcCCCcEEEEEcC-CC--eEEEEECC
Q psy16005 175 PSSISLDHEHGLVAVGG-A---DSKVHIYELNNKSL--SPKAELDHLGPVTDCSFSPSNEYLVASDA-HR--KVVLYRVP 245 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~-~---d~~v~i~d~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~--~i~vw~~~ 245 (248)
...-.++++|..|+..+ . .+.|..+|+.++.. ...+. .|...+. .|++++++|+.... ++ .|++|++.
T Consensus 282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 22223677777655444 3 35799999987654 12222 4555554 89999998877654 33 68888876
Q ss_pred C
Q psy16005 246 D 246 (248)
Q Consensus 246 ~ 246 (248)
.
T Consensus 359 g 359 (693)
T 3iuj_A 359 G 359 (693)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.7e-10 Score=91.20 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=131.4
Q ss_pred CcEEEEEecCCCceeeeeecCCcc--------------------------------eEEEEECcCCcEEEEEccCC----
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCA--------------------------------VNVAKYSPSGFYIASGDISG---- 80 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~--------------------------------v~~~~~s~~~~~l~~~~~dg---- 80 (248)
++.|+.+|..+++.+-.+...... ...++++|++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 589999999999987655432111 12567888888888887664
Q ss_pred ---------------eEEEEECCCCceeeeeeccCCC-------CCeeEEEEecCC---CEEEEEeCCc----------E
Q psy16005 81 ---------------KVRIWDTVNKEHILKNEFHPIG-------GPIKDIAWSPDN---QRMISIVENG----------A 125 (248)
Q Consensus 81 ---------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~~~~~~----------~ 125 (248)
.|..+|.++++....+....|. ....-+....+| +.++.++.++ .
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 5999999999987766654442 122222333355 4455555444 3
Q ss_pred EEEEccCCCCC------------------------------------ceeEeCCCCCEEEEEcC----------------
Q psy16005 126 KVSSLPIDYEP------------------------------------SSISLDHEHGLVAVGGA---------------- 153 (248)
Q Consensus 126 ~i~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~---------------- 153 (248)
.+|..+..... ..++++|++.++++...
T Consensus 349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~ 428 (677)
T 1kb0_A 349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ 428 (677)
T ss_dssp EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence 44444322100 14677888888776532
Q ss_pred ---------------------------CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 154 ---------------------------DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 154 ---------------------------~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
.+.|..|| +++.+...+.........+..++..+++++.||.+++||.+++
T Consensus 429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 26788899 6788888877666666677778888999999999999999999
Q ss_pred CCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 205 SLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
+.+..+..++...-.-+.|.++|+.++.
T Consensus 509 ~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 509 EKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 9877766555433445667788875543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-08 Score=76.95 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=135.8
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeec--------------------CCcceEEEEECc-CCcEEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE--------------------HSCAVNVAKYSP-SGFYIAS 75 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~--------------------~~~~v~~~~~s~-~~~~l~~ 75 (248)
..+.+++|+++|++++++. ++.|..|+..+++... +.. ....+..+++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 3466799999998666665 8899999877654332 210 113478899998 665 444
Q ss_pred EccCCeEEEEECCCCceeeee-eccC-CCCCeeEEEEec-CCCEEEEEeC------------------CcEEEEEccC--
Q psy16005 76 GDISGKVRIWDTVNKEHILKN-EFHP-IGGPIKDIAWSP-DNQRMISIVE------------------NGAKVSSLPI-- 132 (248)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~-~~~~-~~~~v~~~~~~~-~~~~l~~~~~------------------~~~~i~~~~~-- 132 (248)
+...+.|..+|..++...... ...+ .......+++.+ +|+..++... .++..++...
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 544456888887755421111 1111 113468899999 8976666432 1233344321
Q ss_pred -------CCCCceeEeCCCCCEEEE-EcCCCeEEEEECCc----eeeee-cccCCCceEEEcCCCCEEEEEcC-------
Q psy16005 133 -------DYEPSSISLDHEHGLVAV-GGADSKISIVENGA----KVSSL-PIDYEPSSISLDHEHGLVAVGGA------- 192 (248)
Q Consensus 133 -------~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~----~~~~~-~~~~~~~~~~~s~~~~~l~~~~~------- 192 (248)
-..+..++++++++.+.+ -...+.|..++... ....+ .... +..++++++|++.++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 134678899999985554 46678899988321 11111 1223 788999999986665543
Q ss_pred ---CCcEEEEEcCCCCCCCcccccC---CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 193 ---DSKVHIYELNNKSLSPKAELDH---LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 193 ---d~~v~i~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.+.|..+|.. ++....+.... ...++.+++ .+++.+++....+.|..+++..
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4668888864 44333332221 234677776 4666666666788999998754
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-08 Score=71.81 Aligned_cols=220 Identities=11% Similarity=0.007 Sum_probs=128.5
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC--CeEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--GKVR 83 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~ 83 (248)
+++..++.. .....++|+|+|+++++-. ++.|..+|.+. +....+ ........+++.++++++++.... ..|.
T Consensus 23 ~~~~~~p~~--~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 23 KIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred eEeEeCCCC--CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 445555542 5678999999998666653 78999999765 333333 234568899999999866554332 2477
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC--------------------CCCceeEeC
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID--------------------YEPSSISLD 142 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~--------------------~~~~~~~~~ 142 (248)
.+|..+++........ .......++..+++..+++....+ +..++.... ..+..+ +
T Consensus 99 ~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 7777777643222222 122334455444443333332222 233332110 012233 6
Q ss_pred CCCCE-EEEEcCCCeEEEEECC---ce--eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCC--cccccC
Q psy16005 143 HEHGL-VAVGGADSKISIVENG---AK--VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSP--KAELDH 214 (248)
Q Consensus 143 ~~~~~-~~~~~~~~~i~~~~~~---~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~ 214 (248)
++++. +++....+.|..++.. +. ...+.....+..++++++|+++++....+.|.++|.. ++... ... ..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~ 253 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-QG 253 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-GT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-cc
Confidence 66654 4555567889998832 21 1112112457889999999877666667889999975 44321 122 12
Q ss_pred CcCeEEEEEc---CCCcEEEEEcC
Q psy16005 215 LGPVTDCSFS---PSNEYLVASDA 235 (248)
Q Consensus 215 ~~~v~~~~~s---~~~~~l~~~~~ 235 (248)
...+++++|. |+++.|+.++.
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cCCceEEEEecccCCCCEEEEECC
Confidence 3568999999 89877766543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-09 Score=86.10 Aligned_cols=191 Identities=11% Similarity=0.111 Sum_probs=134.0
Q ss_pred cccccccCCcEEEEe-C-CCCCEEEEeC-------------------CcEEEEEecCCCceeeeeecCCcceEEEEECcC
Q psy16005 11 TLPRTQRGQPIVLGG-D-PKGKNFLYTN-------------------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS 69 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~-s-~~~~~l~~~~-------------------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~ 69 (248)
.+|.. ..+..+++ + |+++++++++ ++.+.+.|.++.+...++.--. ....++++|+
T Consensus 129 ~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spd 205 (595)
T 1fwx_A 129 EIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYE 205 (595)
T ss_dssp ECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSS
T ss_pred eCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCC
Confidence 45543 34778887 5 9999998872 3589999999998887775322 4567889999
Q ss_pred CcEEEEEccCC--------------------------------------eEEEEECCC--CceeeeeeccCCCCCeeEEE
Q psy16005 70 GFYIASGDISG--------------------------------------KVRIWDTVN--KEHILKNEFHPIGGPIKDIA 109 (248)
Q Consensus 70 ~~~l~~~~~dg--------------------------------------~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~ 109 (248)
|+++++.+.+. .|.+.|.++ ++.. ...++. .....++.
T Consensus 206 Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~-~~~Ipv-g~~PhGv~ 283 (595)
T 1fwx_A 206 GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLF-TRYIPI-ANNPHGCN 283 (595)
T ss_dssp SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSS-EEEEEE-ESSCCCEE
T ss_pred CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCcee-EEEEec-CCCceEEE
Confidence 99998887543 366777766 3320 112221 23567899
Q ss_pred EecCCCEEEEEeC--CcEEEEEccC---------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--C--
Q psy16005 110 WSPDNQRMISIVE--NGAKVSSLPI---------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--N-- 162 (248)
Q Consensus 110 ~~~~~~~l~~~~~--~~~~i~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~-- 162 (248)
++|||+++++++. +.+.++++.. +..+..++|+++|..+.+..-++.|..|+ .
T Consensus 284 ~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~ 363 (595)
T 1fwx_A 284 MAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAI 363 (595)
T ss_dssp ECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHH
T ss_pred EcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhh
Confidence 9999999999874 4467777652 34678899999996667788899999999 2
Q ss_pred --------CceeeeecccCCC------ceEEEcCCCCEEEEEcC---CCc----------EEEEEcCCCCC
Q psy16005 163 --------GAKVSSLPIDYEP------SSISLDHEHGLVAVGGA---DSK----------VHIYELNNKSL 206 (248)
Q Consensus 163 --------~~~~~~~~~~~~~------~~~~~s~~~~~l~~~~~---d~~----------v~i~d~~~~~~ 206 (248)
.+.+..+..+..+ ..+..+|||++|++++. |.. -.++|+..++.
T Consensus 364 ~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 364 RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred hhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 3456666666665 33456899999998864 332 28899966554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-09 Score=89.92 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=129.3
Q ss_pred EEEeCCCCCEEEEeC-Cc-------------------EEEEEecCCCceeeeeec--CC-------cceEEEEECcCCc-
Q psy16005 22 VLGGDPKGKNFLYTN-GN-------------------SVIIRNIENPAISDIYTE--HS-------CAVNVAKYSPSGF- 71 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~~-------------------~v~v~~~~~~~~~~~~~~--~~-------~~v~~~~~s~~~~- 71 (248)
.++++|++..++.+. ++ .|..+|..+++..-.++. |. .+........+|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 578889888888876 44 399999999998876653 21 1222222223564
Q ss_pred --EEEEEccCCeEEEEECCCCceeeeeeccCCC-------------------------------------CCeeEEEEec
Q psy16005 72 --YIASGDISGKVRIWDTVNKEHILKNEFHPIG-------------------------------------GPIKDIAWSP 112 (248)
Q Consensus 72 --~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------~~v~~~~~~~ 112 (248)
.++.++.+|.++++|.++++.+....+.... ..-..++|+|
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 7889999999999999999876433322100 0011267777
Q ss_pred CCCEEEEEeCCcE-EEEEccCCCCCceeEeCCCCCEEEEE------------------cCCCeEEEEE--CCceeeeecc
Q psy16005 113 DNQRMISIVENGA-KVSSLPIDYEPSSISLDHEHGLVAVG------------------GADSKISIVE--NGAKVSSLPI 171 (248)
Q Consensus 113 ~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~--~~~~~~~~~~ 171 (248)
+...+++...+.. .++..... . .+.+....+..+ ..++.|..|| +++.+...+.
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~-~----~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 473 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEA-P----KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY 473 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSC-C----CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEeccccceeeeecccc-c----cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence 7777776654433 22222211 0 000000000000 0147899999 6788888777
Q ss_pred cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEE
Q psy16005 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 232 (248)
......-.+...+.++++|+.||.++.||.++++.+-....++...-.-+.|..+|+.+++
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 6655555666778899999999999999999999876665444333344677888875443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-08 Score=70.08 Aligned_cols=188 Identities=9% Similarity=0.130 Sum_probs=128.8
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
.++. -...+..++|+|++..|++.. ++.|...|.. ++..+.+.. -......+++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g-~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAG-ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTT-CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCC-cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4444 335799999999887777653 7789999987 777776642 2246788999999887777667789999987
Q ss_pred CCCce---eeeeec----cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------------CCCCcee
Q psy16005 88 VNKEH---ILKNEF----HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------------DYEPSSI 139 (248)
Q Consensus 88 ~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------------~~~~~~~ 139 (248)
..... .....+ ...+.....++|+|+++.|+++.+.. ..+|.++. -..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65442 111211 12355678999999998777776543 45665531 1234677
Q ss_pred EeCCCC-CEEEEEcCCCeEEEEE-CCceeeeecccC----------CCceEEEcCCCCEEEEEcCCCcEEEEEc
Q psy16005 140 SLDHEH-GLVAVGGADSKISIVE-NGAKVSSLPIDY----------EPSSISLDHEHGLVAVGGADSKVHIYEL 201 (248)
Q Consensus 140 ~~~~~~-~~~~~~~~~~~i~~~~-~~~~~~~~~~~~----------~~~~~~~s~~~~~l~~~~~d~~v~i~d~ 201 (248)
+++|.. ++++....++.+..+| .++.+..+.+.. .+..++++++|+..++ ++-+.++.|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 888765 4566667778888899 666666665442 4578999999985444 66677777654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-09 Score=74.87 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=116.0
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-Cc--EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEE-ccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GN--SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~--~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i 82 (248)
+++..+|.....-...+.|+ ++.++.+++ +| .|+++|+++++....+... .........++++.|+.. -.++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 35556654444445788898 665444444 43 8999999999998877543 333333233344455444 468899
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.++|..+.+.+......+ ....+++|++.|+.+ ..++.|.++|
T Consensus 110 ~v~D~~t~~~~~ti~~~~-----eG~glt~dg~~L~~S-------------------------------dGs~~i~~iDp 153 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-----EGWGLTHNDQYLIMS-------------------------------DGTPVLRFLDP 153 (262)
T ss_dssp EEEETTTCCEEEEEECSS-----CCCCEEECSSCEEEC-------------------------------CSSSEEEEECT
T ss_pred EEEECccCcEEEEEECCC-----CceEEecCCCEEEEE-------------------------------CCCCeEEEEcC
Confidence 999999988765444432 112333555555442 2245566666
Q ss_pred -CCceeeeeccc------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-----------CCcCeEEEEE
Q psy16005 162 -NGAKVSSLPID------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-----------HLGPVTDCSF 223 (248)
Q Consensus 162 -~~~~~~~~~~~------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~ 223 (248)
+.+.+..++.. ..++.+.+. +|+..+..-.++.|.+.|.++++....+... .....+.++|
T Consensus 154 ~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~ 232 (262)
T 3nol_A 154 ESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAW 232 (262)
T ss_dssp TTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEE
T ss_pred CCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEE
Confidence 33444444432 123446665 6765555556789999999998865443321 1245689999
Q ss_pred cCCCcEEEEEcC
Q psy16005 224 SPSNEYLVASDA 235 (248)
Q Consensus 224 s~~~~~l~~~~~ 235 (248)
+|+++.|+..+.
T Consensus 233 dp~~~~lfVTGK 244 (262)
T 3nol_A 233 DKEHHRLFVTGK 244 (262)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCEEEEECC
Confidence 999887766654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-08 Score=75.61 Aligned_cols=212 Identities=9% Similarity=0.012 Sum_probs=122.6
Q ss_pred CCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCC---C
Q psy16005 28 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGG---P 104 (248)
Q Consensus 28 ~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~ 104 (248)
++..++...++.|+.+|..+++................. .+..++.++.++.|..+|..+++.+.......... .
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 344444445899999999999887665433222111222 24467888889999999999998765544322110 0
Q ss_pred eeEEEEecCCCEEEEEeC----------CcEEEEEccCCCCCc--------eeEeCC--CCCEEEEEcCCCeEEEEE--C
Q psy16005 105 IKDIAWSPDNQRMISIVE----------NGAKVSSLPIDYEPS--------SISLDH--EHGLVAVGGADSKISIVE--N 162 (248)
Q Consensus 105 v~~~~~~~~~~~l~~~~~----------~~~~i~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~i~~~~--~ 162 (248)
....... + ..++++.. ++..+|......... .+...| .+..+.+++.++.+..+| +
T Consensus 181 ~~~~~~~-~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 181 ESAPTTA-F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCEEE-T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred CCCcEEE-C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 0111111 2 23333332 334455544322110 011111 245677778889999999 5
Q ss_pred CceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 163 GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
++.+....... ...+.. ++..+++++.++.|..+|..+++..-.........+..... .+..|+.++.+|.+..+
T Consensus 259 G~~~w~~~~~~-~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 259 GQIMWKRELGS-VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CCEEEEECCCC-EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred CcEEeeccCCC-CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEE
Confidence 66666554322 223333 46678888889999999999988643332111122223333 24678888889999999
Q ss_pred ECCCCC
Q psy16005 243 RVPDFE 248 (248)
Q Consensus 243 ~~~~~~ 248 (248)
|..+++
T Consensus 334 d~~tG~ 339 (376)
T 3q7m_A 334 NVEDGR 339 (376)
T ss_dssp ETTTCC
T ss_pred ECCCCc
Confidence 998875
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-08 Score=74.63 Aligned_cols=208 Identities=15% Similarity=0.142 Sum_probs=123.4
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecC---------CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEH---------SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
+..+++++ ++.|+.+|..+++..-..... ...+.+. ...++..++.++.++.|..+|..+++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 44555554 889999999999887655432 1222221 122455778888899999999999987655554
Q ss_pred cCCCCCeeEEEEecCCCEEEEEe----------CCcEEEEEccCCCCCc------eeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIV----------ENGAKVSSLPIDYEPS------SISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.... ....... ++ .+++++ .++..+|......... .... .+..++++..++.+..+|
T Consensus 132 ~~~~--~~~p~~~-~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEA--LSRPVVS-DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCC--CSCCEEE-TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEET
T ss_pred CCce--EcCCEEE-CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEEC
Confidence 3211 1111111 22 333333 2344555554433221 1112 145677788899999999
Q ss_pred -CCceeeeecccCCCc--------eEEEcC--CCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEE
Q psy16005 162 -NGAKVSSLPIDYEPS--------SISLDH--EHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 162 -~~~~~~~~~~~~~~~--------~~~~s~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 230 (248)
+++.+.......... .+...| .+..+++++.++.+..+|.++++..-... ......+.. ++..+
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~--~~~~l 280 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---LGSVNDFIV--DGNRI 280 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---CCCEEEEEE--ETTEE
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---CCCCCCceE--ECCEE
Confidence 567766655332100 011112 34577888889999999999988653332 223344444 35677
Q ss_pred EEEcCCCeEEEEECCCCC
Q psy16005 231 VASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~~ 248 (248)
+.++.++.+..+|..+++
T Consensus 281 ~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp EEEETTCCEEEEETTTCC
T ss_pred EEEcCCCeEEEEECCCCc
Confidence 778888999999998875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-08 Score=73.10 Aligned_cols=187 Identities=9% Similarity=0.002 Sum_probs=113.7
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceE--EEEECcCCcEEEEEccCCeEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVN--VAKYSPSGFYIASGDISGKVR 83 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~~~~dg~i~ 83 (248)
+++..+|.....-...+.|+. +.++.+.+ ++.|+++|+++++..+.+ .. .... .+++..+ ++.+..-.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEE
Confidence 455666554445557888873 34444444 778999999999988877 32 3333 3555432 3344445688999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE-- 161 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (248)
++|..+.+.+......+. -..++ +|++.|+.+ ..++.|.++|
T Consensus 120 V~D~~Tl~~~~ti~~~~e---GwGLt--~Dg~~L~vS-------------------------------dGs~~l~~iDp~ 163 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGE---GWGLC--YWNGKLVRS-------------------------------DGGTMLTFHEPD 163 (268)
T ss_dssp EEETTTTEEEEEEECSSC---CCCEE--EETTEEEEE-------------------------------CSSSEEEEECTT
T ss_pred EEECCcCcEEEEEeCCCc---eeEEe--cCCCEEEEE-------------------------------CCCCEEEEEcCC
Confidence 999999887654444321 12333 455554443 3355666666
Q ss_pred CCceeeeecccC------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc------------CCcCeEEEEE
Q psy16005 162 NGAKVSSLPIDY------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD------------HLGPVTDCSF 223 (248)
Q Consensus 162 ~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~v~~~~~ 223 (248)
+.+.+..+.... .++.+.|. +|+..+..-.++.|.+.|.++++.+..+... .....+.++|
T Consensus 164 T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~ 242 (268)
T 3nok_A 164 GFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAV 242 (268)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEE
T ss_pred CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEE
Confidence 344444444322 23456666 6765555556789999999999865443321 2246789999
Q ss_pred cCCCcEEEEEc
Q psy16005 224 SPSNEYLVASD 234 (248)
Q Consensus 224 s~~~~~l~~~~ 234 (248)
+|+++.|+..+
T Consensus 243 dp~~~rlfVTG 253 (268)
T 3nok_A 243 EPGSGRIFMTG 253 (268)
T ss_dssp CTTTCCEEEEE
T ss_pred cCCCCEEEEeC
Confidence 99876665554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-08 Score=75.85 Aligned_cols=207 Identities=7% Similarity=0.009 Sum_probs=132.4
Q ss_pred CCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeE
Q psy16005 28 KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD 107 (248)
Q Consensus 28 ~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 107 (248)
++..++.+.++.+..+|.. ++...........+.++...+++. ++.++.++.|..+|.. ++....... ....+.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~--~~~~~~~ 181 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT--NDAITSA 181 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec--CCCceee
Confidence 4444444448899999988 776665555555566677777776 6667788999999998 665433333 2445667
Q ss_pred EEEecCCCEEEEEeCCcEEEEE--------ccCC-CCCceeEeCCCCCEEEEEcCCCeEEEEE-CCceeeeecccCC-Cc
Q psy16005 108 IAWSPDNQRMISIVENGAKVSS--------LPID-YEPSSISLDHEHGLVAVGGADSKISIVE-NGAKVSSLPIDYE-PS 176 (248)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~~i~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~-~~ 176 (248)
+...+++...+.. +++..++ .... ..+.++...+++.+++ ++.++.+..++ .++.+..+..... +.
T Consensus 182 ~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g~~~~~~~~~~~~~~ 258 (330)
T 3hxj_A 182 ASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINPDGTEKWRFKTGKRIES 258 (330)
T ss_dssp CEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECTTSCEEEEEECSSCCCS
T ss_pred eEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECCCCCEeEEeeCCCCccc
Confidence 7777777655444 5555444 3322 3356677777776544 56677888888 4555555544333 34
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.+...+++ .|.+++.+|.|..+|. +++...... .....+.++...++|+ |..++.+|.+++...+.
T Consensus 259 ~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 259 SPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred cceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 56666666 4667777888999996 555433332 2344567777777876 56678899999887643
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-06 Score=66.85 Aligned_cols=222 Identities=8% Similarity=-0.040 Sum_probs=135.3
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceeeeeec
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
..|.+..+ ..+|+.+....|+..++........+.. ...+..++|++....|+ +-...+.|..+++...... ...
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~~~ 111 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--EVV 111 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce--EEE
Confidence 45666666 4566667767788888876555444433 34578999998555554 5456789999998876532 122
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCC--cEEEEEccC----------CCCCceeEeCCCCC-EEEEEcCC-CeEEEEE-CC
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVEN--GAKVSSLPI----------DYEPSSISLDHEHG-LVAVGGAD-SKISIVE-NG 163 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~-~~i~~~~-~~ 163 (248)
.........+++++.+..|+.+... .+.+.+++. -..+..++++|.+. ++.+-... +.|..++ .+
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 2222456789999877666666533 344444332 13467788888555 44444444 7788887 44
Q ss_pred ceeeeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEE
Q psy16005 164 AKVSSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVV 240 (248)
Q Consensus 164 ~~~~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 240 (248)
.....+. .-..++.++++|++..|..+. ..+.|..+|+...... .+..........+++. .+..+++-...+.|.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCCCCceEEEEE-CCEEEEecCCCCeEE
Confidence 4333332 223478999998777666654 4678999998754332 2221233456778883 444455555667888
Q ss_pred EEECCCC
Q psy16005 241 LYRVPDF 247 (248)
Q Consensus 241 vw~~~~~ 247 (248)
.++..+|
T Consensus 270 ~~~~~~G 276 (349)
T 3v64_C 270 SANKFTG 276 (349)
T ss_dssp EEETTTC
T ss_pred EEEccCC
Confidence 8775444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-08 Score=70.57 Aligned_cols=164 Identities=9% Similarity=-0.004 Sum_probs=108.0
Q ss_pred ceeeeeecCCc--ceEEEEECcCCcEEEEEcc--CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc
Q psy16005 49 AISDIYTEHSC--AVNVAKYSPSGFYIASGDI--SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124 (248)
Q Consensus 49 ~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 124 (248)
+.+.++ .|.. ....+.|+|++.+.++.+. ++.|.++|+.+++.+....+..+ .....+++. ++.|+
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~ly------ 79 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLY------ 79 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEE------
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEE------
Confidence 344455 3443 3579999998755555443 57999999999987654444322 112233333 33333
Q ss_pred EEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcC
Q psy16005 125 AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELN 202 (248)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~ 202 (248)
++.-.++.+.++| +.+.+.+++.. ......+++||+.++++..++.|.++|..
T Consensus 80 ------------------------v~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~ 134 (266)
T 2iwa_A 80 ------------------------QVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPH 134 (266)
T ss_dssp ------------------------EEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTT
T ss_pred ------------------------EEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECC
Confidence 3345667888888 45666666655 34456677788878887788999999999
Q ss_pred CCCCCCcccccC----CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 203 NKSLSPKAELDH----LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 203 ~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+.+.......+. -..++.+.|. +|+.++....++.|.+.|..+++
T Consensus 135 t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 135 TFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC
T ss_pred CCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc
Confidence 988765554331 1246788888 77655555567899999998875
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-08 Score=81.59 Aligned_cols=216 Identities=9% Similarity=-0.014 Sum_probs=127.1
Q ss_pred CCEEEEe-CCcEEEEEecCCCceeeeeecCC--c--ceEE-EEECcCCcEEEEEcc------CCeEEEEECCCCceeeee
Q psy16005 29 GKNFLYT-NGNSVIIRNIENPAISDIYTEHS--C--AVNV-AKYSPSGFYIASGDI------SGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 29 ~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~--~--~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 96 (248)
+..++++ .++.+..+|..+++..-...... . .+.+ .... ++ .+++++. ++.|..+|.++++.+.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 3455555 48999999999998876554211 0 1111 1111 44 4555554 799999999999876554
Q ss_pred eccCCC-----------------------------------C-CeeEEEEecCCCEEEEEe-------------------
Q psy16005 97 EFHPIG-----------------------------------G-PIKDIAWSPDNQRMISIV------------------- 121 (248)
Q Consensus 97 ~~~~~~-----------------------------------~-~v~~~~~~~~~~~l~~~~------------------- 121 (248)
...... . ....++++++...++.+.
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432210 0 001244555444444332
Q ss_pred -------CCcEEEEEccCCC----------CCceeEeCCCCC---EEEEEcCCCeEEEEE--CCceeeeecccCCC----
Q psy16005 122 -------ENGAKVSSLPIDY----------EPSSISLDHEHG---LVAVGGADSKISIVE--NGAKVSSLPIDYEP---- 175 (248)
Q Consensus 122 -------~~~~~i~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~---- 175 (248)
+.+..+|..+... .+.-+....+++ .++.++.+|.++.+| +++.+...+....+
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 2344567665421 111112223563 567788899999999 67766655432100
Q ss_pred ------------------------------------ceEEEcCCCCEEEEEc----------------------------
Q psy16005 176 ------------------------------------SSISLDHEHGLVAVGG---------------------------- 191 (248)
Q Consensus 176 ------------------------------------~~~~~s~~~~~l~~~~---------------------------- 191 (248)
..++++|+...+++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 2467888877776653
Q ss_pred ---------CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 192 ---------ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 192 ---------~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+|.|..||+.+++..-+... ...+....+...+..++.++.|+.++.+|.++||
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 347899999999887544432 2222222233345677778999999999999886
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-08 Score=82.45 Aligned_cols=100 Identities=7% Similarity=-0.063 Sum_probs=68.3
Q ss_pred CcEEEEeC-CCCCEEEEeC--C----cEEEEEecCCC-ceee-eeecCCcceEEEEECcCCcEEEEEccC-----CeEEE
Q psy16005 19 QPIVLGGD-PKGKNFLYTN--G----NSVIIRNIENP-AISD-IYTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRI 84 (248)
Q Consensus 19 ~v~~~~~s-~~~~~l~~~~--~----~~v~v~~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i 84 (248)
.+...+|| |||++|+.+. + ..|+++|+.++ +.+. .+. .....++|+||++.|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56788999 9999999763 2 25999999988 6322 121 123468899999888776654 36888
Q ss_pred EECCCCceeeeeecc-CCCCCeeEEEEecCCCEEEEEe
Q psy16005 85 WDTVNKEHILKNEFH-PIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 85 wd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
+++.+++......+. ........+.|+|||++|+...
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 888776422112221 2223456789999999988776
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-07 Score=66.07 Aligned_cols=190 Identities=11% Similarity=0.006 Sum_probs=115.0
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-C--cEEEEEecCCCceeeeeecCCcc-eEEEEECcCCcEEEEEccCCeE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-G--NSVIIRNIENPAISDIYTEHSCA-VNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--~~v~v~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i 82 (248)
+++...|.....-...+.|++ +.++.+.+ . ..|+.+|+.+++..+.+...... -..+++. .++.....-.++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEE
Confidence 466677665556677899986 44444443 2 59999999999998877543221 1233443 23444445578999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
.++|..+.+.+......+ .-..+ .++++.|+.+ ..++.|.++|
T Consensus 88 ~v~D~~tl~~~~ti~~~~---~Gwgl--t~dg~~L~vS-------------------------------dgs~~l~~iDp 131 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPG---EGWAL--TSDDSHLYMS-------------------------------DGTAVIRKLDP 131 (243)
T ss_dssp EEEETTTTEEEEEEECSS---CCCEE--EECSSCEEEE-------------------------------CSSSEEEEECT
T ss_pred EEEECCcCcEEEEEeCCC---CceEE--eeCCCEEEEE-------------------------------CCCCeEEEEeC
Confidence 999999988765444432 12333 3455544432 2345666666
Q ss_pred -CCceeeeecccC------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc------------CCcCeEEEE
Q psy16005 162 -NGAKVSSLPIDY------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD------------HLGPVTDCS 222 (248)
Q Consensus 162 -~~~~~~~~~~~~------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~------------~~~~v~~~~ 222 (248)
+.+.+..++... .++.+.+. +|+..+..-.+..|.+.|.++++.+...... .....+.++
T Consensus 132 ~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA 210 (243)
T 3mbr_X 132 DTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIA 210 (243)
T ss_dssp TTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEE
T ss_pred CCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEE
Confidence 334444444321 23445554 6665555556778999999998865433211 224578999
Q ss_pred EcCCCcEEEEEcC
Q psy16005 223 FSPSNEYLVASDA 235 (248)
Q Consensus 223 ~s~~~~~l~~~~~ 235 (248)
++|+++.|+..+.
T Consensus 211 ~d~~~~~lfVTGK 223 (243)
T 3mbr_X 211 FDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEEET
T ss_pred EcCCCCEEEEECC
Confidence 9998776665553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-06 Score=67.26 Aligned_cols=220 Identities=7% Similarity=-0.036 Sum_probs=133.6
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHP 100 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (248)
|.+..+ ..+|+.+....|+..++........... ......++|++.+..| ++-...+.|..+++...... ..+..
T Consensus 81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--EVVST 156 (386)
T ss_dssp EEECSS-CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE--EEECS
T ss_pred ECCccc-cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE--EEEeC
Confidence 444445 4466666767888888876655544433 3457899999755444 55556789999998876532 12222
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEccC------------CCCCceeEeCCCCCEEE-EEcCC-CeEEEEE-CCce
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------------DYEPSSISLDHEHGLVA-VGGAD-SKISIVE-NGAK 165 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~-~~i~~~~-~~~~ 165 (248)
.......+++++.+..|+.+....-.|+.+.. -..+..++++|.+..+. +-... +.|..++ .+..
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 22356778999877777666543323333221 13456788887655444 43344 6788777 4433
Q ss_pred eeeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 166 VSSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 166 ~~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
...+. .-..++.++++|++..|+.+. ..+.|..+|+..... ..+..........+++ ..+..+++-...+.|..+
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEE
Confidence 33332 223478999998777666654 567899999875433 2222223345678888 344555555667888888
Q ss_pred ECCCC
Q psy16005 243 RVPDF 247 (248)
Q Consensus 243 ~~~~~ 247 (248)
+..+|
T Consensus 315 ~~~~G 319 (386)
T 3v65_B 315 NKFTG 319 (386)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 85444
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-07 Score=71.45 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=114.6
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC------------------CCCCeeEEEEec-CCCEEEEE
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------------------IGGPIKDIAWSP-DNQRMISI 120 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------~~~~v~~~~~~~-~~~~l~~~ 120 (248)
...+++|++++++++++..++.|..||..+++... ..... ....+..+++++ +++.+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 35678899999878888889999999987654321 11100 013578899997 66655554
Q ss_pred eCCcEEEEEccCC--------------CCCceeEeCC-CCCEEEEEcC-----------------CCeEEEEECC-ceee
Q psy16005 121 VENGAKVSSLPID--------------YEPSSISLDH-EHGLVAVGGA-----------------DSKISIVENG-AKVS 167 (248)
Q Consensus 121 ~~~~~~i~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~-----------------~~~i~~~~~~-~~~~ 167 (248)
...++..++.... ..+..+++.+ +++++++... ++.|..+|.. ....
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 4555555543211 1346688899 8887776533 3678888842 2222
Q ss_pred e-ecccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCC-cccccCCcCeEEEEEcCCCcEEEEEcC---------
Q psy16005 168 S-LPIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSP-KAELDHLGPVTDCSFSPSNEYLVASDA--------- 235 (248)
Q Consensus 168 ~-~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~--------- 235 (248)
. ......++.++++|+++.|+++ ..++.|..|++.....-. .......+ ...+++.++|+++++...
T Consensus 179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCC
Confidence 2 2223457889999999966665 556889999987542211 11111223 788999999986666543
Q ss_pred -CCeEEEEEC
Q psy16005 236 -HRKVVLYRV 244 (248)
Q Consensus 236 -d~~i~vw~~ 244 (248)
.+.|..+|.
T Consensus 258 ~~~~v~~~d~ 267 (322)
T 2fp8_A 258 VDPKGIKFDE 267 (322)
T ss_dssp EEEEEEEECT
T ss_pred CccEEEEECC
Confidence 345666654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-08 Score=81.35 Aligned_cols=218 Identities=12% Similarity=0.076 Sum_probs=130.3
Q ss_pred CCEEEEeC-CcEEEEEecCCCceeeeeecCCc-ceEEEEECc--CCcEEEEEcc------CCeEEEEECCCCceeeeeec
Q psy16005 29 GKNFLYTN-GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSP--SGFYIASGDI------SGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 29 ~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 98 (248)
+..++++. ++.|+.+|..+|+.+-.+..... ....+.-+| .+..++++.. +|.|..+|.++++.+.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 34555554 99999999999998766643210 001111122 1334555543 58999999999997765543
Q ss_pred cCCC-----------------------------CCeeEEEEecCCCEEEEEeCCc-------------------------
Q psy16005 99 HPIG-----------------------------GPIKDIAWSPDNQRMISIVENG------------------------- 124 (248)
Q Consensus 99 ~~~~-----------------------------~~v~~~~~~~~~~~l~~~~~~~------------------------- 124 (248)
.... .....++++|+...++.+..++
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 2110 0112467888777776665433
Q ss_pred ----EEEEEccCCC----------CCceeEeCCCCC---EEEEEcCCCeEEEEE--CCceeeeecccC------------
Q psy16005 125 ----AKVSSLPIDY----------EPSSISLDHEHG---LVAVGGADSKISIVE--NGAKVSSLPIDY------------ 173 (248)
Q Consensus 125 ----~~i~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~i~~~~--~~~~~~~~~~~~------------ 173 (248)
..+|..+... .+....+..+++ .++.++.+|.++++| +++.+...+...
T Consensus 277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 2345544321 111111222454 688889999999999 677663322110
Q ss_pred -------------------------CCceEEEcCCCCEEEEEc------------------------------------C
Q psy16005 174 -------------------------EPSSISLDHEHGLVAVGG------------------------------------A 192 (248)
Q Consensus 174 -------------------------~~~~~~~s~~~~~l~~~~------------------------------------~ 192 (248)
.-..++++|+...+++.. .
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 012367888777665421 2
Q ss_pred CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|.|..||+.+++..-+.. ...+.....+...+.+++.++.|+.++.||.++|+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~--~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEeCCCCcEEEEcc--CCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 3789999999998754433 22233333445567888899999999999999885
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.6e-07 Score=67.52 Aligned_cols=213 Identities=13% Similarity=0.161 Sum_probs=123.3
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCcee--eeee---cCCcceEEEEECcC---CcEEEEEcc-C-----CeEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAIS--DIYT---EHSCAVNVAKYSPS---GFYIASGDI-S-----GKVR 83 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~--~~~~---~~~~~v~~~~~s~~---~~~l~~~~~-d-----g~i~ 83 (248)
..+..++|.|+|+++++-.++.|++++ .++.. ..+. ........++++|+ +..|+.+.. . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 457899999999977776689999988 34321 1111 12346789999998 555554433 2 5788
Q ss_pred EEECCCCce----eeeeecc---CCCCCeeEEEEecCCCEEEEEeCCc------------EEEEEccCCC----------
Q psy16005 84 IWDTVNKEH----ILKNEFH---PIGGPIKDIAWSPDNQRMISIVENG------------AKVSSLPIDY---------- 134 (248)
Q Consensus 84 iwd~~~~~~----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~------------~~i~~~~~~~---------- 134 (248)
.++...+.. .....++ ........++|.|||...++.++.+ -+|+.+..+.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 888764321 1111122 1112346899999997666544321 2566654332
Q ss_pred --------------CCceeEeCC-CCCEEEEEcCCCe--------EEEEECCc------------------eeeeecccC
Q psy16005 135 --------------EPSSISLDH-EHGLVAVGGADSK--------ISIVENGA------------------KVSSLPIDY 173 (248)
Q Consensus 135 --------------~~~~~~~~~-~~~~~~~~~~~~~--------i~~~~~~~------------------~~~~~~~~~ 173 (248)
.+..++++| ++.++++-..... |.....+. ....+....
T Consensus 189 ~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 268 (352)
T 2ism_A 189 RRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGF 268 (352)
T ss_dssp CTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCC
Confidence 256778888 6666665433332 44444222 111222223
Q ss_pred CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC------CCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSL------SPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 174 ~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
.+..+++ .+|.++++....+.|...+++.... ...+. .....+..+++.|||..+++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence 4556777 4666666666677788888765432 11121 2235789999999998776653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-06 Score=65.48 Aligned_cols=217 Identities=12% Similarity=0.112 Sum_probs=126.1
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc-eeeeee---cCCcceEEEEECcC---CcEEEEEcc----C----Ce
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA-ISDIYT---EHSCAVNVAKYSPS---GFYIASGDI----S----GK 81 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~-~~~~~~---~~~~~v~~~~~s~~---~~~l~~~~~----d----g~ 81 (248)
...+..++|.|+|+++++-.++.|++++ .+++ .+..+. ........++++|+ +..|+.+.. + ..
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3567899999999977776689999887 4444 111111 12345789999997 444544332 3 56
Q ss_pred EEEEECCCC--c----eeeeeeccC-CCCCeeEEEEecCCCEEEEEeCCc------------EEEEEccCCC--------
Q psy16005 82 VRIWDTVNK--E----HILKNEFHP-IGGPIKDIAWSPDNQRMISIVENG------------AKVSSLPIDY-------- 134 (248)
Q Consensus 82 i~iwd~~~~--~----~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~------------~~i~~~~~~~-------- 134 (248)
|..|+.... . ......+.. .......++|.|||...++.++.+ -+|+.+..+.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777776654 1 111111221 112346799999998666654321 1566654332
Q ss_pred -----------CCceeEeCC-CCCEEEEEcCCC---eEEEEECCc------------------eeeee-cccCCCceEEE
Q psy16005 135 -----------EPSSISLDH-EHGLVAVGGADS---KISIVENGA------------------KVSSL-PIDYEPSSISL 180 (248)
Q Consensus 135 -----------~~~~~~~~~-~~~~~~~~~~~~---~i~~~~~~~------------------~~~~~-~~~~~~~~~~~ 180 (248)
.+..++++| +++++++-.... .|.+...+. .+..+ .....+..+++
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 356788888 666666543322 244433222 11122 12334567777
Q ss_pred c-------CCCCEEEEEcCCCcEEEEEcCCC-CCC--CcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 181 D-------HEHGLVAVGGADSKVHIYELNNK-SLS--PKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 181 s-------~~~~~l~~~~~d~~v~i~d~~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
. .+|.++++....+.|...++... +.. ..+..+....+..+++.|||.++++..
T Consensus 267 y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 267 VHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 3 56777777666778988888753 221 122212245789999999998666654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-06 Score=63.19 Aligned_cols=214 Identities=12% Similarity=0.011 Sum_probs=130.4
Q ss_pred CEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCC---ceeeeeeccCCCCCe
Q psy16005 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNK---EHILKNEFHPIGGPI 105 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v 105 (248)
.+|+.+....|+..++.+.+....+. ......+++|++++..| ++-...+.|..+++... ... ...+...-..+
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~-~~~~~~~~~~p 79 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRDIQAP 79 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEEECSSCSCC
T ss_pred CEEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc-EEEEeCCCCCc
Confidence 35777777789999998876655553 34567899999865544 55556789999998761 111 11222222456
Q ss_pred eEEEEecCCCEEEEEeC--CcEEEEEccC----------CCCCceeEeCCCCCEEEEEc-CC-CeEEEEE-CCceeeeec
Q psy16005 106 KDIAWSPDNQRMISIVE--NGAKVSSLPI----------DYEPSSISLDHEHGLVAVGG-AD-SKISIVE-NGAKVSSLP 170 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~--~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~-~~~~~~~~~ 170 (248)
..+++++.+..|+.+.. +.+.+.++.. ...+..++++|.+..+.... .. +.|...+ .+.....+.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 78999886666665543 2344444321 23567788888655444433 33 6788887 444443332
Q ss_pred --ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc--cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 171 --IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 171 --~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.-..++.++++|++..|+.+. ..+.|..+|+..... ..+.. ........+++. .+..+++-...+.|..++..
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 234578999999877666554 567899999975433 22211 122346778885 35555555667889888876
Q ss_pred CC
Q psy16005 246 DF 247 (248)
Q Consensus 246 ~~ 247 (248)
++
T Consensus 238 ~g 239 (316)
T 1ijq_A 238 TG 239 (316)
T ss_dssp TC
T ss_pred CC
Confidence 55
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-06 Score=71.36 Aligned_cols=223 Identities=11% Similarity=0.098 Sum_probs=142.8
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee-------cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
..|.++...++|.+.+...+ .|.+|+..+++...... .....|.++...++|. |..|+.++-|..++..++
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence 56899999999987776655 68889977665443221 1235799999998887 555667777888887655
Q ss_pred ceeeeeecc----CCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC------------------CCCCceeEeCCCCCEE
Q psy16005 91 EHILKNEFH----PIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------------------DYEPSSISLDHEHGLV 148 (248)
Q Consensus 91 ~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~ 148 (248)
......... -....|.++..+++|+..+....+|+..++... ...+.++...++++.+
T Consensus 341 ~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 341 RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEE
T ss_pred cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEE
Confidence 422111100 123568999998888766655555777666431 1234566667788756
Q ss_pred EEEcCCCeEEEEECC-ceeeeecc------cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-----cCCc
Q psy16005 149 AVGGADSKISIVENG-AKVSSLPI------DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-----DHLG 216 (248)
Q Consensus 149 ~~~~~~~~i~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~~~ 216 (248)
.+|+.++-|..++.. .....+.. ...+.++..+++|.+.+.. .+ -+.+||..+++....... -...
T Consensus 421 Wigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp EEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred EEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCc
Confidence 667777779999832 33333332 2346788888888755544 34 488999887654221110 1235
Q ss_pred CeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 217 PVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 217 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.|.++...++|+..+... +-+..|+..+
T Consensus 499 ~i~~i~~d~~g~lWigt~--~Gl~~~~~~~ 526 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGE--EGLSVFKQEG 526 (795)
T ss_dssp CEEEEEECTTCCEEEEES--SCEEEEEEET
T ss_pred eEEEEEECCCCCEEEEeC--CceEEEeCCC
Confidence 789999999998666554 4577777643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.1e-06 Score=69.27 Aligned_cols=222 Identities=9% Similarity=0.020 Sum_probs=142.0
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeec--------CCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE--------HSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
...|.++...++|++.+...++-|..|+..+++....... ....|.++...++++.|..|+.++-+..+|..
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 3468999999999887766677889999877654432211 23578999988888856667777779999988
Q ss_pred CCceeeeeecc--CCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------------CCCceeEeCCCCCEEEE
Q psy16005 89 NKEHILKNEFH--PIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------------YEPSSISLDHEHGLVAV 150 (248)
Q Consensus 89 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------------~~~~~~~~~~~~~~~~~ 150 (248)
+++........ .....|.++...++|+..+... +|+.+++.... ..+.++..++++++.+.
T Consensus 436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 436 SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 77632111100 1245789999888887666554 78777764321 23456677778876665
Q ss_pred EcCCCeEEEEEC-Cceeeeec--------ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-cc-CCcCeE
Q psy16005 151 GGADSKISIVEN-GAKVSSLP--------IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-LD-HLGPVT 219 (248)
Q Consensus 151 ~~~~~~i~~~~~-~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~v~ 219 (248)
.. +.+..|+. .... .+. ....+.++..+++|.+.+... . -+..||..+++...... .+ ....|.
T Consensus 515 t~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~ 589 (795)
T 4a2l_A 515 GE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVY 589 (795)
T ss_dssp ES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred eC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheE
Confidence 44 45777772 2222 221 123467888888888555443 4 58889987765422111 11 234688
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++...++|.+.+++. +-|..|+.++
T Consensus 590 ~i~~d~~g~lWi~t~--~Gl~~~~~~~ 614 (795)
T 4a2l_A 590 GILEDSFGRLWLSTN--RGISCFNPET 614 (795)
T ss_dssp EEEECTTSCEEEEET--TEEEEEETTT
T ss_pred EEEECCCCCEEEEcC--CceEEEcCCC
Confidence 999999998766663 4456666544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.6e-06 Score=64.30 Aligned_cols=187 Identities=9% Similarity=0.056 Sum_probs=118.3
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+..++|++.+..|+.+. .+.|+.++++.......+.........+++.+. +++.++-...+.|.+.++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~- 151 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK- 151 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-
Confidence 3478899998777777764 788999998766544433332344578889874 455556566789999998765422
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
..+...-.....++++|.+..|+.+.... -+|+.+..+ ..+..+++++++. ++++-...+.|..+
T Consensus 152 -~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 152 -VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp -EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred -EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 22222335678999999877777776544 444443221 2356788997555 45555567788888
Q ss_pred E-CCceeeee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 161 E-NGAKVSSL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 161 ~-~~~~~~~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+ .+.....+ . ....+..+++. .+.++++-...+.|..++..+++..
T Consensus 231 ~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 231 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred eCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 8 44333322 1 12346777773 4445555556778888886555543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-07 Score=65.44 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=105.2
Q ss_pred eeeeeecCCc--ceEEEEECcCCcEEEEEccCC--eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE
Q psy16005 50 ISDIYTEHSC--AVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 50 ~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 125 (248)
.++++ .|.. ....+.|+ ++.++.+.+.+| .|+++|+++++.+....+. .........++++.|+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~g~~ly------- 100 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDWKDKIV------- 100 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEETTEEE-------
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEeCCEEE-------
Confidence 34445 3433 35788998 677667777766 8999999999876544443 2233322333343332
Q ss_pred EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 126 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 126 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
...-.++.+.++| +.+.+.+++...... .+++|++.|+.+..++.|.++|..+
T Consensus 101 -----------------------~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~--glt~dg~~L~~SdGs~~i~~iDp~T 155 (262)
T 3nol_A 101 -----------------------GLTWKNGLGFVWNIRNLRQVRSFNYDGEGW--GLTHNDQYLIMSDGTPVLRFLDPES 155 (262)
T ss_dssp -----------------------EEESSSSEEEEEETTTCCEEEEEECSSCCC--CEEECSSCEEECCSSSEEEEECTTT
T ss_pred -----------------------EEEeeCCEEEEEECccCcEEEEEECCCCce--EEecCCCEEEEECCCCeEEEEcCCC
Confidence 2344577888888 566777777654433 4446778777777788899999999
Q ss_pred CCCCCccccc-CC---cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAELD-HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+........ .. ..++.+.|. +|+..+..-.++.|.+.|.++++
T Consensus 156 ~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 156 LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence 8876554432 11 335668886 77766656567899999998875
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-07 Score=75.07 Aligned_cols=213 Identities=12% Similarity=0.064 Sum_probs=123.7
Q ss_pred EEEe-CCcEEEEEecCCCceeeeeecCCc----ceEE-EEECcCCcEEEEEc------cCCeEEEEECCCCceeeeeecc
Q psy16005 32 FLYT-NGNSVIIRNIENPAISDIYTEHSC----AVNV-AKYSPSGFYIASGD------ISGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 32 l~~~-~~~~v~v~~~~~~~~~~~~~~~~~----~v~~-~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 99 (248)
++++ .++.++.+|..+|+.+-....... .+.+ ... .++ .+++++ .+|.|+.+|.++++.+......
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 5555 489999999999998765542210 1111 111 144 455554 3799999999999877554432
Q ss_pred CCC-----------------------------------CCe-eEEEEecCCCEEEEEeCC--------------------
Q psy16005 100 PIG-----------------------------------GPI-KDIAWSPDNQRMISIVEN-------------------- 123 (248)
Q Consensus 100 ~~~-----------------------------------~~v-~~~~~~~~~~~l~~~~~~-------------------- 123 (248)
... ..+ ..++++++...++.+..+
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 000 134455555555554432
Q ss_pred ------cEEEEEccCCCC----------CceeEeC-CCC---CEEEEEcCCCeEEEEE--CCceeeeecccC--------
Q psy16005 124 ------GAKVSSLPIDYE----------PSSISLD-HEH---GLVAVGGADSKISIVE--NGAKVSSLPIDY-------- 173 (248)
Q Consensus 124 ------~~~i~~~~~~~~----------~~~~~~~-~~~---~~~~~~~~~~~i~~~~--~~~~~~~~~~~~-------- 173 (248)
|..+|..+.... +.-+... .++ ..++.++.+|.++.+| +++.+...+...
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 334565543221 1112222 456 4677788999999999 677665543211
Q ss_pred --------------------------------CCceEEEcCCCCEEEEEc------------------------------
Q psy16005 174 --------------------------------EPSSISLDHEHGLVAVGG------------------------------ 191 (248)
Q Consensus 174 --------------------------------~~~~~~~s~~~~~l~~~~------------------------------ 191 (248)
.-..++++|+..++++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence 013467787766655431
Q ss_pred ---------CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 192 ---------ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 192 ---------~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..|.|.-||+.+++.+-....+ .+...-...-.+..++.++.|+.++.||.++||
T Consensus 442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp TTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 3467888899888765433222 112111122246677778999999999999986
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=78.71 Aligned_cols=225 Identities=11% Similarity=0.076 Sum_probs=128.1
Q ss_pred EEEeCC-CCCEEEEeC-C-----------cEEEEEecCCCceeee--ee-cCCcceEEEEECcCCcEEEEEcc-CCeEEE
Q psy16005 22 VLGGDP-KGKNFLYTN-G-----------NSVIIRNIENPAISDI--YT-EHSCAVNVAKYSPSGFYIASGDI-SGKVRI 84 (248)
Q Consensus 22 ~~~~s~-~~~~l~~~~-~-----------~~v~v~~~~~~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i 84 (248)
++++.| +++.++.|+ + ..+.+||..+++.... +. .+.....++++.++++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566667 888888764 1 1688999988764332 21 12333445778889999999884 458999
Q ss_pred EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-C------cEEEEEccCCCCCc--------------eeEeCC
Q psy16005 85 WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-N------GAKVSSLPIDYEPS--------------SISLDH 143 (248)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~------~~~i~~~~~~~~~~--------------~~~~~~ 143 (248)
||..+++......+... ..-.+++..++++.++.++. + .+.+|+........ ...+..
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99988764432223221 22234566678998888873 2 35667764321100 011224
Q ss_pred CCCEEEEEcCCC---------eEEEEECCcee--eeecc-c---------CCCceEEEc-CCCCEEEEEcCCC-------
Q psy16005 144 EHGLVAVGGADS---------KISIVENGAKV--SSLPI-D---------YEPSSISLD-HEHGLVAVGGADS------- 194 (248)
Q Consensus 144 ~~~~~~~~~~~~---------~i~~~~~~~~~--~~~~~-~---------~~~~~~~~s-~~~~~l~~~~~d~------- 194 (248)
++..++.++.++ .+..||..... ..... . ..-.++.+. .+++++++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 556666665554 45567732211 11111 1 112333343 3778888887532
Q ss_pred ----cEEEEEcCCCCCCCcc--cccCCcCeEEEEEcCCCcEEEEEcCC-----------CeEEEEECCCC
Q psy16005 195 ----KVHIYELNNKSLSPKA--ELDHLGPVTDCSFSPSNEYLVASDAH-----------RKVVLYRVPDF 247 (248)
Q Consensus 195 ----~v~i~d~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~vw~~~~~ 247 (248)
.|.+||..+.+-.... .......-.++...|+++.++.|+.+ ..+.+||..+.
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 5778887765532211 11111122445667899999998754 46888987653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-06 Score=67.39 Aligned_cols=224 Identities=9% Similarity=0.030 Sum_probs=127.6
Q ss_pred CCcEEEEeCC-CCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC-C----eEEEEECCCC
Q psy16005 18 GQPIVLGGDP-KGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS-G----KVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~-~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g----~i~iwd~~~~ 90 (248)
..+..++++| ++..|+++. .+.|+.+|+.++...... ........++|+++++.|+.+... + .+...+. .+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 4677899998 455666664 488999998876654443 344567899999999966665542 2 3444443 33
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEcc-----------CCCCCceeEeCCCCC-EEEEEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLP-----------IDYEPSSISLDHEHG-LVAVGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~ 156 (248)
.......+.. ......++++|++..|+.+.. +.+..++.. ....+..++++|+++ ++++....+.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 2221112221 234677889994444544442 233444432 123477899999999 5556667788
Q ss_pred EEEEE-CC---ce--eeeecc----------------cCCCc-eEEEc--------CCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 157 ISIVE-NG---AK--VSSLPI----------------DYEPS-SISLD--------HEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 157 i~~~~-~~---~~--~~~~~~----------------~~~~~-~~~~s--------~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
|..++ .+ .. ...+.. -..+. .++.. ++|.+.++=..++.|+.++. .++
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc
Confidence 88876 21 11 111110 01123 44543 34555555555677888873 333
Q ss_pred CCCcccc------c----------CCcCeEEEEEcCC-CcEEEEEcCCCeEEEEECC
Q psy16005 206 LSPKAEL------D----------HLGPVTDCSFSPS-NEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 206 ~~~~~~~------~----------~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~ 245 (248)
....... + .-.....++++|+ +.++++-...+.|+.++++
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2111100 0 1125789999995 5555555567889888764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-10 Score=86.92 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=74.4
Q ss_pred CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEE
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLV 148 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 148 (248)
++..+++++.||.|..||..+++.+..... +.+.+..+.. ++..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~-------------------------------~g~~~ 52 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHV-------------------------------EEPAF 52 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------------------------------------CCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEc-------------------------------CCCEE
Confidence 567899999999999999999987654443 2222222222 23345
Q ss_pred EEEcCCCeEEEEE--CCceeeeecccCC--C-ceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 149 AVGGADSKISIVE--NGAKVSSLPIDYE--P-SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 149 ~~~~~~~~i~~~~--~~~~~~~~~~~~~--~-~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
++++.|+.++.|| +++.+........ + ....+. ++..+++++.++.|+.||.++++....... +. ...+
T Consensus 53 v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~ 126 (369)
T 2hz6_A 53 LPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSL 126 (369)
T ss_dssp EECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------
T ss_pred EEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccc
Confidence 5567788888888 4665554433211 1 111111 345677888899999999999988655432 21 2356
Q ss_pred cCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 224 SPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 224 s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|++..+++++.|+.|+.||.++|+
T Consensus 127 ~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 127 SPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSS
T ss_pred cccCCEEEEEecCCEEEEEECCCCC
Confidence 7788899999999999999998875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-06 Score=66.00 Aligned_cols=190 Identities=8% Similarity=0.049 Sum_probs=119.4
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+..++|++.+..|+.+. .+.|+.++++.......+.........+++.+. +++.++-...+.|.+.++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~- 194 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK- 194 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-
Confidence 4577899998777777664 789999998766544433332334567888875 455555566788999888755422
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
..+...-.....++++|.+..|+.+.... -+|+.+..+ ..+..++++|++. ++++-...+.|..+
T Consensus 195 -~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 195 -VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp -EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred -EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 22222335678999999888777776544 445444322 2356788886554 45555667788888
Q ss_pred E-CCceeeee-c-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 161 E-NGAKVSSL-P-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 161 ~-~~~~~~~~-~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
+ .+.....+ . ....+..+++. .+.++++-...+.|..++..+++....+
T Consensus 274 d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 274 NLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp CTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 8 33332222 1 22346778873 4445555566788999986666554333
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-07 Score=63.88 Aligned_cols=160 Identities=10% Similarity=0.054 Sum_probs=106.4
Q ss_pred eeeeeecCC--cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE
Q psy16005 50 ISDIYTEHS--CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV 127 (248)
Q Consensus 50 ~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i 127 (248)
.++++ .|. .....+.|+ ++.+..+.+.+|.|+++|+++++.+... +. .........++++.|
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---~~~FgeGit~~g~~L---------- 108 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL---GNIFAEGLASDGERL---------- 108 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC---TTCCEEEEEECSSCE----------
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC---CCcceeEEEEeCCEE----------
Confidence 34444 343 334788887 4667778888899999999999876544 33 223332223333333
Q ss_pred EEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 128 SSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
+.....++.+.++| +.+.+.+++.......+ ++|++.|+.+..++.|.++|..+.+
T Consensus 109 --------------------y~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~ 166 (268)
T 3nok_A 109 --------------------YQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFA 166 (268)
T ss_dssp --------------------EEEESSSCEEEEEETTTTEEEEEEECSSCCCCE--EEETTEEEEECSSSEEEEECTTTCC
T ss_pred --------------------EEEEccCCEEEEEECCcCcEEEEEeCCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCe
Confidence 33345678888888 56677777765444444 4678888888888999999999988
Q ss_pred CCCccccc-CC---cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 206 LSPKAELD-HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 206 ~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
........ +. ..++.+.|. +|+..+..-.++.|.+.|.++++
T Consensus 167 v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 167 LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence 76554432 21 245778887 77656555567899999998875
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-07 Score=74.22 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=54.2
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EE
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YL 230 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 230 (248)
++.|..|| +++.+...+.........+...+.++++++.|+.++.||.++++.+.....+....-.-+.+..+|+ ++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv 516 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence 37788899 6777777766655555555666788999999999999999999987655543211112234455776 44
Q ss_pred EEE
Q psy16005 231 VAS 233 (248)
Q Consensus 231 ~~~ 233 (248)
+.+
T Consensus 517 a~~ 519 (668)
T 1kv9_A 517 AIM 519 (668)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.2e-07 Score=72.14 Aligned_cols=54 Identities=2% Similarity=-0.031 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 193 DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|.|.-||+.+++..-+.... .++..-.....+..++.++.|+.++.||.++||
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 578999999999875443322 122211112246678889999999999999986
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-05 Score=60.81 Aligned_cols=215 Identities=14% Similarity=0.051 Sum_probs=130.6
Q ss_pred CEEEEeCCcEEEEEecCCCc--eeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCee
Q psy16005 30 KNFLYTNGNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (248)
.+|+.+....|+..+++... ....+. ......+++|++. +.++.+-...+.|..+++..+.... ..+...-....
T Consensus 5 p~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~ 82 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPD 82 (318)
T ss_dssp CEEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCC
T ss_pred cEEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCcc
Confidence 36777778889999998764 222222 2345678999985 4555555667899999987663211 11111224567
Q ss_pred EEEEecCCCEEEEEeCC--cEEEEEccC----------CCCCceeEeCCCCCEEEEEc--CCCeEEEEE-CCceeeeec-
Q psy16005 107 DIAWSPDNQRMISIVEN--GAKVSSLPI----------DYEPSSISLDHEHGLVAVGG--ADSKISIVE-NGAKVSSLP- 170 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~--~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~~~- 170 (248)
.+++++.+..|+.+... .+.+.+++. ...+..++++|.+..+.... ..+.|...+ .+.....+.
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 89999866666665432 344554432 23456778887655544444 357788887 444333331
Q ss_pred -ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 171 -IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 171 -~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.-..++.++++|++..|+.+. ..+.|..+|+..... ..+..+.......+++.. +..+.+-...+.|..++..+|+
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 223578999999777666654 567899999875433 222222334567777753 3444455566889888886653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-06 Score=68.38 Aligned_cols=185 Identities=11% Similarity=0.112 Sum_probs=108.4
Q ss_pred cCCcEEEEeCCCCCEEEEeCC----c-EEEEEecCCCce-eeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNG----N-SVIIRNIENPAI-SDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~----~-~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
...+..++++++|+++++... . .+...+...+.. ...+. .-.....++++| ++.+.++-..++.|+.+|..+
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence 345889999999994444332 1 233344322211 11221 223456788999 677666666778999999886
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEE--ccCC-----------------------------CCCce
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSS--LPID-----------------------------YEPSS 138 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~--~~~~-----------------------------~~~~~ 138 (248)
+.........+.......++|+|++++|+.+....-+|+. +... ..+..
T Consensus 260 g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~g 339 (433)
T 4hw6_A 260 GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQ 339 (433)
T ss_dssp CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEE
T ss_pred CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCcc
Confidence 6641111111112334579999999988777755434433 3211 11345
Q ss_pred eEe---------CCCCCEEEEEcCCCeEEEEECCceeeeecc-------------------cCCCceEEEc-CCCCEEEE
Q psy16005 139 ISL---------DHEHGLVAVGGADSKISIVENGAKVSSLPI-------------------DYEPSSISLD-HEHGLVAV 189 (248)
Q Consensus 139 ~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------------------~~~~~~~~~s-~~~~~l~~ 189 (248)
+++ .++++++++-.....|+.++..-.+..+.. -..+..++++ ++|.++++
T Consensus 340 iav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 340 GIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 777 677777777777888888883223332221 1125678888 56655555
Q ss_pred EcCCCcEEEEEcC
Q psy16005 190 GGADSKVHIYELN 202 (248)
Q Consensus 190 ~~~d~~v~i~d~~ 202 (248)
=..++.|+.++++
T Consensus 420 D~~n~rIr~i~~e 432 (433)
T 4hw6_A 420 DCDNHRVRKIAPE 432 (433)
T ss_dssp EGGGTEEEEEEEC
T ss_pred eCCCCEEEEEecC
Confidence 5566778887764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-07 Score=68.05 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=113.4
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.+.++...+++..++...++.+..+|.. ++....+......+.++...+++.+.+ ++ +.+..+| .+++......
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~- 211 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY- 211 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-
Confidence 3445566778876665567999999988 777666655556677777877777554 44 7899999 6666543333
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCcEE--------EEEccCCCC-CceeEeCCCCCEEEEEcCCCeEEEEE-CCceeee
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENGAK--------VSSLPIDYE-PSSISLDHEHGLVAVGGADSKISIVE-NGAKVSS 168 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~--------i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ 168 (248)
.....+.++..+++|...+....+++. +|....... ...+...+++ .+.+++.++.+..+| .++.+..
T Consensus 212 -~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~g~~~~~ 289 (330)
T 3hxj_A 212 -AGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPDGTEKWN 289 (330)
T ss_dssp -CSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTTSCEEEE
T ss_pred -cCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCCCcEEEE
Confidence 234567788888887655554444443 344433322 2344555555 455677788899998 4555555
Q ss_pred eccc-CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 169 LPID-YEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 169 ~~~~-~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
+... ..+.++..++++. |.+++.+|.+++...+..+
T Consensus 290 ~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred EEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 5443 3456777777876 5668889999988776543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.2e-06 Score=66.46 Aligned_cols=224 Identities=10% Similarity=0.040 Sum_probs=127.9
Q ss_pred CCcEEEEeCCC--CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---C-eEEEEECCCC
Q psy16005 18 GQPIVLGGDPK--GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---G-KVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~--~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g-~i~iwd~~~~ 90 (248)
..+..++|+|+ +..|+.+. .+.|+.++..+++..... ........++++++++++++.... . .+...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 45778999995 44555554 488999998777665544 344568899999999944443311 1 2333333222
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--------------CCCceeEeCCCCC-EEEEEcCCC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID--------------YEPSSISLDHEHG-LVAVGGADS 155 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~ 155 (248)
. .....+. .-.....++++|++..|+.+....-+++.+... .....++++|+++ ++++-...+
T Consensus 218 ~-~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 F-TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp T-CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred e-ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 1 1001111 124456788999444444444322233333221 1223589999998 555556678
Q ss_pred eEEEEEC----Ccee--eeecc----------------cCCCceEEE---------cCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 156 KISIVEN----GAKV--SSLPI----------------DYEPSSISL---------DHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 156 ~i~~~~~----~~~~--~~~~~----------------~~~~~~~~~---------s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
.|..++. +... ..+.. -..+..+++ .++|.++++-..++.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 8888772 2110 11110 113567888 777777776667788999885 33
Q ss_pred CCCCcccc----------------cCCcCeEEEEEc-CCCcEEEEEcCCCeEEEEECC
Q psy16005 205 SLSPKAEL----------------DHLGPVTDCSFS-PSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 205 ~~~~~~~~----------------~~~~~v~~~~~s-~~~~~l~~~~~d~~i~vw~~~ 245 (248)
......-. ..-.....++++ ++|.++++-...+.|+.++++
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22111000 011347889999 666666665667889988765
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-05 Score=66.35 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=138.3
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee--------------cCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT--------------EHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
...|.++...++|.+.+....+-|.+++..+.+...... .....|.++...++|. |..|+.++-|
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl 335 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI 335 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence 356889999999887776665678888877654322111 2345799999988876 5566767778
Q ss_pred EEEECCCCceeeeee-------ccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-------------CCCCceeEeC
Q psy16005 83 RIWDTVNKEHILKNE-------FHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI-------------DYEPSSISLD 142 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~-------------~~~~~~~~~~ 142 (248)
..++...+....... ..-....|.++...++|+..+....+|+..++... ...+.++...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d 415 (781)
T 3v9f_A 336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD 415 (781)
T ss_dssp EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC
T ss_pred EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC
Confidence 888877654321110 01123568999988888766655567776666431 1234556666
Q ss_pred CCCCEEEEEcCCCeEEEEECC-ceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc----
Q psy16005 143 HEHGLVAVGGADSKISIVENG-AKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD---- 213 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~---- 213 (248)
+++.+.+ |+.++.+..++.. .....+.. ...+.++...+++.+.+ |+. +-|..||..+++........
T Consensus 416 ~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 416 SEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp TTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCccccc
Confidence 6676555 5666678888842 33333332 24567788888876444 444 45899998876653221111
Q ss_pred CCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 214 HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 214 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
....|.++...++|...+.....| +..|+.++
T Consensus 493 ~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~ 524 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM 524 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred ccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence 145789999999988666544344 66666544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-06 Score=62.62 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=100.9
Q ss_pred CcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeee-eec----C--CcceEEEEE---CcCCcEEEEEc---------
Q psy16005 19 QPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDI-YTE----H--SCAVNVAKY---SPSGFYIASGD--------- 77 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~-~~~----~--~~~v~~~~~---s~~~~~l~~~~--------- 77 (248)
-..+++|.+....+..++ .+.|..|+...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 345789988666666665 89999999875543332 221 1 113679999 68888777543
Q ss_pred ----cCCeEEEEECC---CCceeeeeeccCC-----------CCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCcee
Q psy16005 78 ----ISGKVRIWDTV---NKEHILKNEFHPI-----------GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSI 139 (248)
Q Consensus 78 ----~dg~i~iwd~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 139 (248)
.+..|..+|+. +++.+....+... ......++..++|+..++.+..--.||.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r---------- 163 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR---------- 163 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE----------
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE----------
Confidence 25779999998 6765544443211 1247788888888877766543112222
Q ss_pred EeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 140 SLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
++|+|+. +..|..... ........+.++++|+|..|++....|.+..+|+.+
T Consensus 164 -V~pdG~~---------~~~~~~~~~--~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 164 -VSADGKT---------VSTFAWESG--NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -ECTTSCC---------EEEEEECCC--CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -EeCCCCE---------EeeeeecCC--CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2333321 222321110 001123467899999999888887799999999884
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-06 Score=60.05 Aligned_cols=161 Identities=11% Similarity=0.083 Sum_probs=104.5
Q ss_pred eeeeeecCC--cceEEEEECcCCcEEEEEccCC--eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE
Q psy16005 50 ISDIYTEHS--CAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA 125 (248)
Q Consensus 50 ~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 125 (248)
.++.+ .|. .....+.|++ +.++.+.+.+| .|+.+|+.+++.+....+.. .........+++.|+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly------- 78 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLI------- 78 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEE-------
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEE-------
Confidence 34445 443 4467899986 55566666654 89999999998765554432 222222233333332
Q ss_pred EEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 126 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 126 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
...-.++.+.++| +.+.+.+++.......+ .+++..|+++..++.|.++|..+
T Consensus 79 -----------------------~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t 133 (243)
T 3mbr_X 79 -----------------------QLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDT 133 (243)
T ss_dssp -----------------------EEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTT
T ss_pred -----------------------EEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCC
Confidence 2345677888888 56677777765544444 46677777777788999999999
Q ss_pred CCCCCccccc-CC---cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 204 KSLSPKAELD-HL---GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 204 ~~~~~~~~~~-~~---~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
.+........ +. ..++.+.|. +|+.++..-.+..|.+.|.++|+
T Consensus 134 ~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 134 LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred CeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence 8876554432 21 345677776 67755555567899999988875
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-06 Score=69.95 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=52.7
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
++.|..+| +++.+...+....+....+...+..+++++.|+.|+.+|.++++.+-.+..+....-.-+.+..+|+.++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 46788888 6777777766555444333444567788999999999999999987665544322122234567777554
Q ss_pred EE
Q psy16005 232 AS 233 (248)
Q Consensus 232 ~~ 233 (248)
..
T Consensus 523 ~~ 524 (571)
T 2ad6_A 523 GS 524 (571)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-05 Score=59.70 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=113.8
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCC----CceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 90 (248)
..+..++|++++..|+.+. .+.|+.+++.. ......+...-.....+++.+.+ ++.++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4577999999877777764 68999999875 22222232222345788998744 44455567789999998765
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCCCEE-EEEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEHGLV-AVGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (248)
... ......-.....++++|.+..|+.+..+. -+|+.+.. -..+..+++++++..+ ++-...+.
T Consensus 110 ~~~--~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~ 187 (316)
T 1ijq_A 110 KRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187 (316)
T ss_dssp SEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ceE--EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe
Confidence 422 12222235678999999777776665432 23433221 1345678888765544 45556678
Q ss_pred EEEEE-CCceeeeec----ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 157 ISIVE-NGAKVSSLP----IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 157 i~~~~-~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
|..++ .+.....+. ....+..+++. .+.++++-...+.|..++..+++.
T Consensus 188 I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 99988 343333332 12346677775 344555556678899998866654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-05 Score=61.03 Aligned_cols=216 Identities=13% Similarity=0.009 Sum_probs=129.3
Q ss_pred CEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCc--eeeeeeccCCCCCee
Q psy16005 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKE--HILKNEFHPIGGPIK 106 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~ 106 (248)
.+|+.+....|+..+++.......+ .....+..++|++.+..|+ +-...+.|+.+++.... ......+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 4667777789999998876655444 3445678999998655555 44567889999987522 011122222335678
Q ss_pred EEEEecCCCEEEEEeCCc--EEEEEcc----------CCCCCceeEeCCCCCEEEEEc-C-CCeEEEEE-CCceeeeec-
Q psy16005 107 DIAWSPDNQRMISIVENG--AKVSSLP----------IDYEPSSISLDHEHGLVAVGG-A-DSKISIVE-NGAKVSSLP- 170 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~--~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~-~~~~~~~~~- 170 (248)
.+++++.+..|+.+.... +.+.+++ ....+..++++|.+..+.... . .+.|...+ .+.....+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998666666665432 3333332 123467788888655554433 2 36788777 444333332
Q ss_pred -ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 171 -IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 171 -~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.-..++.++++|++..|+.+. ..+.|..+|+........... ........+++. .+..+.+-...+.|..++..+|
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 224578999999877776664 467899999876443222211 122345677773 3344445556678888886555
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-05 Score=67.95 Aligned_cols=223 Identities=13% Similarity=0.022 Sum_probs=137.0
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeee---ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY---TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
...|.++...++|.+.+...++-+..++..++...... ......|.++...+++++.+ |+.++-+..+|..+++..
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence 35688999999888776665667888887654332211 12346789998888777544 666667888998776532
Q ss_pred eeeec-cCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC---------------CCCceeEeCCCCCEEEEEcCCCeE
Q psy16005 94 LKNEF-HPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID---------------YEPSSISLDHEHGLVAVGGADSKI 157 (248)
Q Consensus 94 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i 157 (248)
. ... ......|.++...++++..+. ..+|+..++.... ..+.++...+++++.+. +.++-+
T Consensus 441 ~-~~~~~~~~~~v~~i~~d~~g~lwig-t~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl 517 (781)
T 3v9f_A 441 I-IELEKNELLDVRVFYEDKNKKIWIG-THAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGV 517 (781)
T ss_dssp E-CCSTTTCCCCEEEEEECTTSEEEEE-ETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCE
T ss_pred E-eccCCCCCCeEEEEEECCCCCEEEE-ECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCE
Confidence 1 111 123467889988887775554 4478777765321 23456667777776654 443446
Q ss_pred EEEEC-Cceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-cc-CCcCeEEEEEcCCCcE
Q psy16005 158 SIVEN-GAKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-LD-HLGPVTDCSFSPSNEY 229 (248)
Q Consensus 158 ~~~~~-~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~ 229 (248)
..++. ......+.. ...+.++..+++|.+.+.. .+|.+..||..+++...... .+ ....|.++...++|..
T Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 518 GIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp EEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCE
T ss_pred EEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCE
Confidence 67773 333333332 2345778888888755544 46655888887765422111 11 2345788988888886
Q ss_pred EEEEcCCCeEEEEECCC
Q psy16005 230 LVASDAHRKVVLYRVPD 246 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~ 246 (248)
.+++ ..| |..++..+
T Consensus 597 W~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 597 WAST-NTG-ISCYITSK 611 (781)
T ss_dssp EEEC-SSC-EEEEETTT
T ss_pred EEEc-CCc-eEEEECCC
Confidence 6654 344 55555543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-05 Score=59.71 Aligned_cols=175 Identities=8% Similarity=0.023 Sum_probs=107.8
Q ss_pred CCcEEEEeCCCCCEEEEeC--C-cEEEEEecCCCceeeeeec-CCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--G-NSVIIRNIENPAISDIYTE-HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~-~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+.+..++++++|+++++.. + ..|..++..+++....... .......++..+++..+++-..++.|..+|...++..
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 4578899999999666542 2 2577777777765433221 1223345555666655566556889999998754211
Q ss_pred ee--e------eccCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEccCC------------CCCceeEeCCCCCEEEEE
Q psy16005 94 LK--N------EFHPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLPID------------YEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 94 ~~--~------~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~~------------~~~~~~~~~~~~~~~~~~ 151 (248)
.. . .....-.....+ +++++.|+.+.... +..+++... ..+..++++++|+++++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 10 0 001111234555 88888888776544 455554321 236678889999988887
Q ss_pred cCCCeEEEEE-CCceee--eeccc-CCCceEEEc---CCCCEEEEEcCCC
Q psy16005 152 GADSKISIVE-NGAKVS--SLPID-YEPSSISLD---HEHGLVAVGGADS 194 (248)
Q Consensus 152 ~~~~~i~~~~-~~~~~~--~~~~~-~~~~~~~~s---~~~~~l~~~~~d~ 194 (248)
...+.|..++ .++... .+... ..+.+++|. |+++.|++++..+
T Consensus 230 ~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 230 HIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp BTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 7888999999 444322 23333 457899998 8887777665443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.7e-06 Score=62.24 Aligned_cols=188 Identities=15% Similarity=0.284 Sum_probs=111.8
Q ss_pred EEEeCCC---CCEEEEe-CCcEEEEEecCCCceeeeeecCCcceEEEEECcC----Cc---EEEEEc-c--CCeEEEEEC
Q psy16005 22 VLGGDPK---GKNFLYT-NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPS----GF---YIASGD-I--SGKVRIWDT 87 (248)
Q Consensus 22 ~~~~s~~---~~~l~~~-~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~---~l~~~~-~--dg~i~iwd~ 87 (248)
++-.+|. ...++.. ..+.+.+||+ +++.++.+.. +.++.+..-|+ |+ ++++.. . +++|.+|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 4555564 2333333 3789999999 7888877753 55677766662 32 223333 3 578999977
Q ss_pred C--CCceeeeeeccC------CC-CCeeEEEE--ecC-CCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCC
Q psy16005 88 V--NKEHILKNEFHP------IG-GPIKDIAW--SPD-NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS 155 (248)
Q Consensus 88 ~--~~~~~~~~~~~~------~~-~~v~~~~~--~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (248)
. ++. + ..+.. .. ..+..+++ +|. +++ ++++...++
T Consensus 107 Dp~~~~-l--~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~------------------------------yafV~~k~G 153 (355)
T 3amr_A 107 DGKNGT-L--QSMTDPDHPIATAINEVYGFTLYHSQKTGKY------------------------------YAMVTGKEG 153 (355)
T ss_dssp CTTTCC-E--EECSCTTSCEECCCSSCCCEEEEECTTTCCE------------------------------EEEEECSSS
T ss_pred CCCCCc-e--eeccccccCcCCCCCCeeEEEEEecCCCCcE------------------------------EEEEECCCC
Confidence 4 333 2 11110 11 34555555 443 221 223333444
Q ss_pred eEEEEE---------CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC-----CCCCCcccccC-CcCeEE
Q psy16005 156 KISIVE---------NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN-----KSLSPKAELDH-LGPVTD 220 (248)
Q Consensus 156 ~i~~~~---------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~-----~~~~~~~~~~~-~~~v~~ 220 (248)
.+..|+ ..+.++++.....+..++.++....|+++-++.-|..|+.+. ++.+.....++ ...+..
T Consensus 154 ~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEG 233 (355)
T 3amr_A 154 EFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEG 233 (355)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEE
T ss_pred eEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcce
Confidence 444443 224567777778888999999888999999987777777552 22222221122 346888
Q ss_pred EEE--cCCCc-EEEEEc-CCCeEEEEECC
Q psy16005 221 CSF--SPSNE-YLVASD-AHRKVVLYRVP 245 (248)
Q Consensus 221 ~~~--s~~~~-~l~~~~-~d~~i~vw~~~ 245 (248)
|++ .++++ +|++++ .++...+||.+
T Consensus 234 Lai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 234 LTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 888 55665 666665 56799999985
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-05 Score=60.80 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=116.9
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCC----ceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~ 89 (248)
...+..++|++.+..|+.+. .+.|+.+++... .....+.........+++.+ .+++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 35678999999877777764 688998888652 22333333345678899987 455555666778999999876
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC---cEEEEEccC----------CCCCceeEeCCCCCEEE-EEcCCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN---GAKVSSLPI----------DYEPSSISLDHEHGLVA-VGGADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~~i~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~ 155 (248)
.... ..+...-.....++++|.+..|+.+... .+...+++. -..+..+++++++..|. +-...+
T Consensus 191 ~~~~--~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 191 VKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp CSEE--EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CceE--EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 5432 2222223457899999977777766532 233333321 13467788987665544 445667
Q ss_pred eEEEEE-CCceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc
Q psy16005 156 KISIVE-NGAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK 209 (248)
Q Consensus 156 ~i~~~~-~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 209 (248)
.|..++ .+.....+.. -..+..+++. .+.++.+-...+.|..+|..+++....
T Consensus 269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~ 326 (400)
T 3p5b_L 269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 326 (400)
T ss_dssp EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence 888888 4433333321 1334566663 233455555677899999777765433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=6e-06 Score=67.39 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=51.5
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
++.|..|| +++.+.+.+.......-.....+.++++|+.|+.++.||.++++.+-+...+....-.-+.|..+|+..+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 57788888 6777777665544433222334667888999999999999999987666543222222356677887443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-05 Score=62.57 Aligned_cols=227 Identities=10% Similarity=0.006 Sum_probs=132.3
Q ss_pred CCcEEEEeCC-CCCEEEEeC--CcEEEEEecCCCceeeeeecC---CcceEEEEE-------CcCCcEEEEEccCC----
Q psy16005 18 GQPIVLGGDP-KGKNFLYTN--GNSVIIRNIENPAISDIYTEH---SCAVNVAKY-------SPSGFYIASGDISG---- 80 (248)
Q Consensus 18 ~~v~~~~~s~-~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~---~~~v~~~~~-------s~~~~~l~~~~~dg---- 80 (248)
.....|+|+| ++..|+.+. .+.|++.|+.++......... ......++| +++++.|+++...+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 3577899999 455566554 467888998877665544321 235889999 99998676665543
Q ss_pred ---eEEEEECCC-Cceee-e--eeccCCCCCeeEEEEecCCCEEEEEe-CCc-EEEEEcc-------C------------
Q psy16005 81 ---KVRIWDTVN-KEHIL-K--NEFHPIGGPIKDIAWSPDNQRMISIV-ENG-AKVSSLP-------I------------ 132 (248)
Q Consensus 81 ---~i~iwd~~~-~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~-~~i~~~~-------~------------ 132 (248)
.|.+.+... +.... . ..+... .....++++|++..|+++. .++ +..+++. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366666443 22110 0 111111 2346788999766666655 333 4455544 1
Q ss_pred -----------CCCCceeEeCCCCCE-EEEEcCCCeEEEEE--CC-cee---eeeccc----------------CCCc-e
Q psy16005 133 -----------DYEPSSISLDHEHGL-VAVGGADSKISIVE--NG-AKV---SSLPID----------------YEPS-S 177 (248)
Q Consensus 133 -----------~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~--~~-~~~---~~~~~~----------------~~~~-~ 177 (248)
...+..++++|+++. +++-.....|+.++ .. ..+ ..+... ..+. .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 123467899999994 55556677888865 21 111 111100 1233 4
Q ss_pred EEEc-------CCCCEEEEEcCCCcEEEEEcCCCCCCCcccc------------c----------CCcCeEEEEEcCC-C
Q psy16005 178 ISLD-------HEHGLVAVGGADSKVHIYELNNKSLSPKAEL------------D----------HLGPVTDCSFSPS-N 227 (248)
Q Consensus 178 ~~~s-------~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------------~----------~~~~v~~~~~s~~-~ 227 (248)
++.. +++.++++=..+..|+.++. ++......-. + .-.....|+++++ |
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 4554 45666666566788999984 3322111000 0 1134788999997 6
Q ss_pred cEEEEEcCCCeEEEEECCC
Q psy16005 228 EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 228 ~~l~~~~~d~~i~vw~~~~ 246 (248)
.++++=.....|+.++++.
T Consensus 457 ~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp EEEEEETTTTEEEEEEECC
T ss_pred EEEEEeCCCCEEEEEECCC
Confidence 6666656678999998754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-06 Score=68.75 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=95.8
Q ss_pred ceEEEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCce
Q psy16005 60 AVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSS 138 (248)
Q Consensus 60 ~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 138 (248)
....++++| ++..|+.+...+.|+.+|+..+.... +.........++|++++++|+++...+-
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~~~~~~P~~ia~d~~G~~lyvad~~~~------------- 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST---VYSGLSKVRTICWTHEADSMIITNDQNN------------- 201 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE---EECCCSCEEEEEECTTSSEEEEEECCSC-------------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE---EecCCCCcceEEEeCCCCEEEEEeCCCC-------------
Confidence 346889998 45566666655889999988765321 1223456788999999986666553210
Q ss_pred eEeCCCCCEEEEEcCCCeEEEEE-CCcee--eeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcccccC
Q psy16005 139 ISLDHEHGLVAVGGADSKISIVE-NGAKV--SSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKAELDH 214 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~--~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 214 (248)
.....+..++ .+... ..+.....+..++++| ++.++++-..++.|..++..++........+.
T Consensus 202 -------------~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~ 268 (430)
T 3tc9_A 202 -------------NDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD 268 (430)
T ss_dssp -------------TTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred -------------cccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC
Confidence 0000111111 11110 1222234578899999 67766666677899999998765422222222
Q ss_pred CcCeEEEEEcCCCcEEEEE-cCCCeEEEEECC
Q psy16005 215 LGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVP 245 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~ 245 (248)
......++|+|+|++|+.+ ...+.|..++.+
T Consensus 269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 3457899999999966555 567889887754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-05 Score=57.00 Aligned_cols=189 Identities=10% Similarity=0.071 Sum_probs=114.7
Q ss_pred eecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEcc
Q psy16005 54 YTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLP 131 (248)
Q Consensus 54 ~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~ 131 (248)
+.+-...+..++|+|+++.| ++...++.|...|.. ++.+....+.+ ......+++.+++.++++.-.+ .+.++.+.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 44555679999999976544 557778899999998 66554444443 2567889999888765543222 22332221
Q ss_pred -------------------CCCCCceeEeCCCCCEEEEEcCCCe--EEEEEC---Cceeeeec--------ccCCCceEE
Q psy16005 132 -------------------IDYEPSSISLDHEHGLVAVGGADSK--ISIVEN---GAKVSSLP--------IDYEPSSIS 179 (248)
Q Consensus 132 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~---~~~~~~~~--------~~~~~~~~~ 179 (248)
.......++++|.++.|.++.+... |+.|+. ...+..+. .-..+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 1122368899998876666665444 444551 11112111 123468899
Q ss_pred EcCCC-CEEEEEcCCCcEEEEEcCCCCCCCcccccC--------CcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 180 LDHEH-GLVAVGGADSKVHIYELNNKSLSPKAELDH--------LGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 180 ~s~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++|.. .+++.......+..+|.... ......... -.....++|.|+|+ |+..++.+.++.+.-..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence 99954 46666667788888987644 322222111 12568899999998 55556777777776543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.2e-06 Score=70.16 Aligned_cols=217 Identities=9% Similarity=0.018 Sum_probs=119.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCc-ceEEEEECcCCcEEEEEc-cC-----CeEEEEE
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSPSGFYIASGD-IS-----GKVRIWD 86 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~-~d-----g~i~iwd 86 (248)
+.....++++.++|+++++|+ +..+.+||..+.+-...-..+.. .-.+++..+++++++.|+ .+ ..+.+||
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 333344577889999999986 56899999887654332111111 123455667899999988 34 4699999
Q ss_pred CCCCceeee-----eeccCCCCCeeEEEEecCCCEEEEEeCC----------cEEEEEccCCC-----------------
Q psy16005 87 TVNKEHILK-----NEFHPIGGPIKDIAWSPDNQRMISIVEN----------GAKVSSLPIDY----------------- 134 (248)
Q Consensus 87 ~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------~~~i~~~~~~~----------------- 134 (248)
..+++.... ..+..... ...+..+++.++.++.+ .+..|+.....
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~ 397 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 397 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred CCCCcceeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC
Confidence 987764321 01111000 01122344444444322 23455543222
Q ss_pred --CCceeEe-CCCCCEEEEEcCCC-----------eEEEEECCceeee------ecccCCCceEEEcCCCCEEEEEcCC-
Q psy16005 135 --EPSSISL-DHEHGLVAVGGADS-----------KISIVENGAKVSS------LPIDYEPSSISLDHEHGLVAVGGAD- 193 (248)
Q Consensus 135 --~~~~~~~-~~~~~~~~~~~~~~-----------~i~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~~~~d- 193 (248)
....+.+ ..++++++.|+.++ .+.+||....... ++....-.+.+..|+++++++|+.+
T Consensus 398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence 1122222 24677888877532 5667773332211 1222223455677899999999854
Q ss_pred ----------CcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCcEEEEEcC
Q psy16005 194 ----------SKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 194 ----------~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
..+.+||..+.+-....... .........+.||++.++.|+.
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 46899999876532111111 1222234556799999999874
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-05 Score=65.05 Aligned_cols=204 Identities=12% Similarity=0.110 Sum_probs=119.4
Q ss_pred EEeCCCCCEEEEeC-C----------------cEEEEEecCCCceeeeeecCC----------cceEEEEEC-cCC---c
Q psy16005 23 LGGDPKGKNFLYTN-G----------------NSVIIRNIENPAISDIYTEHS----------CAVNVAKYS-PSG---F 71 (248)
Q Consensus 23 ~~~s~~~~~l~~~~-~----------------~~v~v~~~~~~~~~~~~~~~~----------~~v~~~~~s-~~~---~ 71 (248)
.++.++...++.+. + +.|..+|.++++..-.++... .++. +... .+| +
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 45566677777664 3 389999999999876665321 1222 2222 467 5
Q ss_pred EEEEEccCCeEEEEECCCCceeeeeeccC-----------CCCCe--------------------------eEEEEecCC
Q psy16005 72 YIASGDISGKVRIWDTVNKEHILKNEFHP-----------IGGPI--------------------------KDIAWSPDN 114 (248)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v--------------------------~~~~~~~~~ 114 (248)
.++.++.+|.+.++|.++++.+....+.. ...++ ..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 67888999999999999998765544321 00111 246788888
Q ss_pred CEEEEEeCCcEEEEEcc-CC---CCCceeEeCCCCCE-EEEE--c------CCCeEEEEE--CCceeeeecccCCCceEE
Q psy16005 115 QRMISIVENGAKVSSLP-ID---YEPSSISLDHEHGL-VAVG--G------ADSKISIVE--NGAKVSSLPIDYEPSSIS 179 (248)
Q Consensus 115 ~~l~~~~~~~~~i~~~~-~~---~~~~~~~~~~~~~~-~~~~--~------~~~~i~~~~--~~~~~~~~~~~~~~~~~~ 179 (248)
..+++...+-...+.+. .. ..+. + ...+ +... + ..+.|..|| +++.+...+...+...-.
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~-~----g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~ 479 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFF-V----GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT 479 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCC-C----CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC
T ss_pred CEEEEeccccceeeecccccccCCcce-e----cccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcc
Confidence 87777665543222211 10 0000 0 0000 1110 1 357788888 677777665544333222
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EEEE
Q psy16005 180 LDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YLVA 232 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 232 (248)
+...+.++++++.|+.++.||.++++.+-+...+......-+.+..+|+ |+++
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEE
Confidence 3334667788999999999999999987665544322223355667886 4443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-05 Score=60.64 Aligned_cols=222 Identities=13% Similarity=0.092 Sum_probs=119.5
Q ss_pred cCCcEEEEeCCCCC-EEEEeCCcEEEEEecCCCceeee---e----ecCCcceEEEEECcC---CcEEEEEc-c------
Q psy16005 17 RGQPIVLGGDPKGK-NFLYTNGNSVIIRNIENPAISDI---Y----TEHSCAVNVAKYSPS---GFYIASGD-I------ 78 (248)
Q Consensus 17 ~~~v~~~~~s~~~~-~l~~~~~~~v~v~~~~~~~~~~~---~----~~~~~~v~~~~~s~~---~~~l~~~~-~------ 78 (248)
...+..++|.|+|+ ++++-..+.|++++.+ +..... + .........++++|+ +..|+.+. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 34678999999999 6766668899998853 332211 1 112345689999995 44444432 2
Q ss_pred -CCeEEEEECCCCc--e----eeeeecc---CCCCCeeEEEEecCCCEEEEEeCCc------------EEEEEccCCC--
Q psy16005 79 -SGKVRIWDTVNKE--H----ILKNEFH---PIGGPIKDIAWSPDNQRMISIVENG------------AKVSSLPIDY-- 134 (248)
Q Consensus 79 -dg~i~iwd~~~~~--~----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~------------~~i~~~~~~~-- 134 (248)
...|..+++.... . .....+. ........++|.|||.+.++.++.+ -+|+.+..+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666664331 1 0001111 1112246799999997666655432 1555554322
Q ss_pred ----------------------CCceeEeCC-CCCEEEEEcC-C--CeEEEEECCce-----------------------
Q psy16005 135 ----------------------EPSSISLDH-EHGLVAVGGA-D--SKISIVENGAK----------------------- 165 (248)
Q Consensus 135 ----------------------~~~~~~~~~-~~~~~~~~~~-~--~~i~~~~~~~~----------------------- 165 (248)
.+..++|+| +++++++-.. + ..|.....+..
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 245677888 4555444222 1 12322211100
Q ss_pred --------eeeecccCCCceEEEcC-------CCCEEEEEcCCCcEEEEEcCCCCCCCc--ccccCCcCeEEEEEcCCCc
Q psy16005 166 --------VSSLPIDYEPSSISLDH-------EHGLVAVGGADSKVHIYELNNKSLSPK--AELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 166 --------~~~~~~~~~~~~~~~s~-------~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~~~~v~~~~~s~~~~ 228 (248)
+..+.....+..+++.. +|.++++....+.|...++..++.... +.......+..+++.|||.
T Consensus 256 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp SCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01111122345566653 466777666778888888875532211 1112235789999999998
Q ss_pred EEEEEc-CCCeE
Q psy16005 229 YLVASD-AHRKV 239 (248)
Q Consensus 229 ~l~~~~-~d~~i 239 (248)
++++.. .+|.|
T Consensus 336 lyv~td~~~g~I 347 (353)
T 2g8s_A 336 LYVLTDESSGEL 347 (353)
T ss_dssp EEEEECSTTEEE
T ss_pred EEEEEeCCCCEE
Confidence 666543 34543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-05 Score=56.95 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=115.6
Q ss_pred CcEEEEeCCCCCEEEEeC--CcEEEEEecCCCcee-eeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceee
Q psy16005 19 QPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAIS-DIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
.+.+++|++.+..|+.+. .+.|+.++++..... ..+...-.....+++.+ .++++++-...+.|.++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~- 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK- 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-
Confidence 466889999777777764 788999998765422 22222223466788887 4555556566789999998765422
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCC------------CCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPID------------YEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
......-.....++++|.+..|+.+... .-+|+.+..+ ..+..+++++++. ++++-...+.|..+
T Consensus 115 -~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 115 -VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp -EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred -EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 2222334567899999977777766532 2344443221 2356788998555 45555667888888
Q ss_pred E-CCceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 161 E-NGAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 161 ~-~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+ .+.....+. ....+..+++..+ .++.+-...+.|..++..+++..
T Consensus 194 d~dG~~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 194 NLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp ETTSCSCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEETTTCCSC
T ss_pred cCCCCceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEECCCCCce
Confidence 8 343333322 2334667777533 34455556788999998776543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-05 Score=57.06 Aligned_cols=216 Identities=7% Similarity=0.022 Sum_probs=122.7
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee---cCCcceEEEEECcCCcEEEEEccCCeEEEEECC-CCcee
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT---EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV-NKEHI 93 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~ 93 (248)
..+.++.+++ +..++++..+.|+. ..+.++.-.... .+...+..+.+.++++.++.+. +|.| |... .++.
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~t- 153 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKN- 153 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESSTTSS-
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCC-
Confidence 4578888876 55556565665554 334444322221 2334577888877777666654 5543 3222 2322
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE-EE----------ccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV-SS----------LPIDYEPSSISLDHEHGLVAVGGADSKISIVE- 161 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 161 (248)
...........+..+++.++++.++++..+.+.. .+ .........+.+.+++.+++. +.+|.++..+
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~ 232 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDP 232 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEET
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecC
Confidence 2222234456788999999988877664443322 11 112334556777888876654 4567777773
Q ss_pred C-Cceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc--cCCcCeEEEEEcCCCcEEEEE
Q psy16005 162 N-GAKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 162 ~-~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~ 233 (248)
. ++.-..+.. ...+..+++.+++..++++. ++.+ ++..+.++.=..... .....+.++.|.++++ ++++
T Consensus 233 D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 309 (327)
T 2xbg_A 233 DNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFIL 309 (327)
T ss_dssp TEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEE
T ss_pred CCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEE
Confidence 3 333222221 22457788888887777665 6656 444454443221211 2345678899976555 5566
Q ss_pred cCCCeEEEEE
Q psy16005 234 DAHRKVVLYR 243 (248)
Q Consensus 234 ~~d~~i~vw~ 243 (248)
+.+|.|.-++
T Consensus 310 G~~G~i~~~~ 319 (327)
T 2xbg_A 310 GQKGILLRYV 319 (327)
T ss_dssp CSTTEEEEEC
T ss_pred cCCceEEEEc
Confidence 6788877665
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00018 Score=60.73 Aligned_cols=215 Identities=12% Similarity=-0.001 Sum_probs=126.6
Q ss_pred CEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCC-cEEEEEccCCeEEEEECCCCce--eeeeeccCCCCCee
Q psy16005 30 KNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG-FYIASGDISGKVRIWDTVNKEH--ILKNEFHPIGGPIK 106 (248)
Q Consensus 30 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~ 106 (248)
.+|+.+....|+..++...+....+. ....+.+++|++.. .++++-...+.|+.+++..... .....+...-..+.
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 35666666778888887665544443 34567899999854 4455555668899999875311 11122222335677
Q ss_pred EEEEecCCCEEEEEeCCc--EEEEEccC----------CCCCceeEeCCCCCEEEEEc-CC-CeEEEEE-CCceeeeecc
Q psy16005 107 DIAWSPDNQRMISIVENG--AKVSSLPI----------DYEPSSISLDHEHGLVAVGG-AD-SKISIVE-NGAKVSSLPI 171 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~--~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~-~~~~~~~~~~ 171 (248)
.|++++.++.|+.+.... +.+.++.. -..+..|+++|.+..|+... .. +.|...+ .+.....+..
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899998887777776443 34444321 23467888888755444433 33 6777777 4444433322
Q ss_pred --cCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEE-cCCCeEEEEECCC
Q psy16005 172 --DYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPD 246 (248)
Q Consensus 172 --~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~ 246 (248)
-..++.|++++.+..|+.+. ..+.|..+++........... ..-.....|++. +..|+.+ ...+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 24578999998777666664 456899999876544222211 112234566664 3345544 4567787777655
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
|
T Consensus 633 G 633 (791)
T 3m0c_C 633 G 633 (791)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00016 Score=59.65 Aligned_cols=214 Identities=9% Similarity=-0.029 Sum_probs=131.6
Q ss_pred CCEEEEeCCcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceeeeeeccCCCCCee
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHILKNEFHPIGGPIK 106 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (248)
..+|+.+....|+..++++.+....+. ..-..+..++|++.+..|+ +-..++.|..+++...... ..+......+.
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~~P~ 83 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLDYPE 83 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSCCC
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCCCcc
Confidence 346777778899999998765433332 1234678999999655554 5556789999998765432 22222224577
Q ss_pred EEEEecCCCEEEEEeCCc--EEEEEccC----------CCCCceeEeCCCCCEEEEEc--CCCeEEEEE-CCceeeee-c
Q psy16005 107 DIAWSPDNQRMISIVENG--AKVSSLPI----------DYEPSSISLDHEHGLVAVGG--ADSKISIVE-NGAKVSSL-P 170 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~--~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~~-~ 170 (248)
.+++++.+..|+.+.... +.+.+++. -..+..++++|....+.... ..+.|...+ .+.....+ .
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~ 163 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP 163 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence 899998877777776543 33333321 23456778887544444333 245666666 33333222 3
Q ss_pred ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 171 IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 171 ~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.-..++.+++++++..|+.+. ..+.|..+|+..... ..+ .........+++.. +..+++-...+.|...|..++
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe-eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 334578999999877666664 567899999976544 222 23334456788765 344444445788888886655
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-05 Score=68.11 Aligned_cols=177 Identities=14% Similarity=0.157 Sum_probs=96.1
Q ss_pred ceEEEEEC-cCCcEEEEEcc-CC----eEEEEECCCC-ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----EEEE
Q psy16005 60 AVNVAKYS-PSGFYIASGDI-SG----KVRIWDTVNK-EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----AKVS 128 (248)
Q Consensus 60 ~v~~~~~s-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~~i~ 128 (248)
.+...+|| |||++||.+.. +| +|+++|+.++ +.+. ..+. .....++|+|||+.|+....+. ..+|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-cccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67889999 99998885533 22 5999999988 6321 1121 1235688999999888776431 2444
Q ss_pred EccCCC---------------CCceeEeCCCCCEEEEEc---CCCeEEEEECCc---ee--eeecccCCCceEEEcCC--
Q psy16005 129 SLPIDY---------------EPSSISLDHEHGLVAVGG---ADSKISIVENGA---KV--SSLPIDYEPSSISLDHE-- 183 (248)
Q Consensus 129 ~~~~~~---------------~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~---~~--~~~~~~~~~~~~~~s~~-- 183 (248)
..+.+. ....+.++|++++|+... ....|+++|... .. ..+.... ....++++
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--TTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--CCceEEEeee
Confidence 433221 113456899999887654 234577777322 12 2222111 12223333
Q ss_pred -CCEEEE-EcCC----CcEEEEEcCCCCCCCc-ccccCCc--CeEEEEEcCCCcEEEEEcCCCe--EEEEEC
Q psy16005 184 -HGLVAV-GGAD----SKVHIYELNNKSLSPK-AELDHLG--PVTDCSFSPSNEYLVASDAHRK--VVLYRV 244 (248)
Q Consensus 184 -~~~l~~-~~~d----~~v~i~d~~~~~~~~~-~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~--i~vw~~ 244 (248)
|..|+. ...+ ..|..+|+.+...... +. .+.. .+..+.+. .+..+++...++. |.++++
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 555444 4333 2577777765322122 22 3333 34555554 2334455566665 445554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.56 E-value=0.0001 Score=55.86 Aligned_cols=217 Identities=13% Similarity=0.150 Sum_probs=123.1
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee--e----ecCCcceEEEEECcC---CcEEEEE---ccCCeEE
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI--Y----TEHSCAVNVAKYSPS---GFYIASG---DISGKVR 83 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~--~----~~~~~~v~~~~~s~~---~~~l~~~---~~dg~i~ 83 (248)
......++|.|||+++++-. .|.|++++..+++.... + .........++++|+ +..|+.. ..+..|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 35678999999999888887 89999998665543211 1 123456789999995 3344432 2345566
Q ss_pred EEECCCCc---------eeeeeecc-CCCCCeeEEEEecCCCEEEEEeCC------------cEEEEEccCCC-------
Q psy16005 84 IWDTVNKE---------HILKNEFH-PIGGPIKDIAWSPDNQRMISIVEN------------GAKVSSLPIDY------- 134 (248)
Q Consensus 84 iwd~~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~------------~~~i~~~~~~~------- 134 (248)
-|....+. ......++ .....-..|+|.|||.+.++.++. .-+|+.+..+.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 66655421 11111121 112234679999999877776531 12566654332
Q ss_pred ------------CCceeEeCCCCCEEEEEcC-CC--eEEEEECCce------------------eeeeccc-CCCceEEE
Q psy16005 135 ------------EPSSISLDHEHGLVAVGGA-DS--KISIVENGAK------------------VSSLPID-YEPSSISL 180 (248)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~~~-~~--~i~~~~~~~~------------------~~~~~~~-~~~~~~~~ 180 (248)
.+..++|+|++.++++-.. ++ .|.....+.. +..+... ..+..++|
T Consensus 191 f~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 191 FPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp STTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 2567888888776665432 22 2333221110 1111111 23455666
Q ss_pred cCCCCEEEEEcCCCcEEEEEcCCCCCC---CcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 181 DHEHGLVAVGGADSKVHIYELNNKSLS---PKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 181 s~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
. +|..+...-..+.|....+...... ..+..+....+..|+..|||.++++.+
T Consensus 271 ~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 271 A-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp E-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred E-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5 3555555555667777777654321 122223456899999999998776653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-06 Score=71.84 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=111.7
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCC----CceeeeeecCCcceEEEEECcC-CcEEEEEccCCeEEEEECCCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIEN----PAISDIYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~ 90 (248)
..+..++|++.+..|+.+. .+.|+.+++.. ......+.........+++.+. ++++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466789999888888875 67899998875 2222222211223456888864 454555456788999998765
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC------------CCCCceeEeCCCC-CEEEEEcCCCe
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI------------DYEPSSISLDHEH-GLVAVGGADSK 156 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~ 156 (248)
... ..+.........++++|.+.+|+.+.... -+|+.+.. -..+..+++++++ .++++-...+.
T Consensus 486 ~~~--~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 486 KRK--TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp CEE--EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred ceE--EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 422 22222224567889999776666654322 23333221 1346788999864 55566667788
Q ss_pred EEEEE-CCceeeeecc----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 157 ISIVE-NGAKVSSLPI----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 157 i~~~~-~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
|..++ .+.....+.. ...+..+++..+ .++++....+.|..++..+++..
T Consensus 564 I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 564 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 99888 3433333321 133566777654 34445556688999998766543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00021 Score=60.30 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=111.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCC----ceeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENP----AISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 89 (248)
...+.+++|++.+..|+.+. .+.|+.+++... .....+.........|++.+.++ ++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34577899998777766664 678888888653 22333332334567889987664 445556678999999986
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC------------CCCceeEeCCCCCE-EEEEcCCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID------------YEPSSISLDHEHGL-VAVGGADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~ 155 (248)
.... ..+...-.....|+++|.+.+|+.+..+. -+|+..... ..+..|++++.+.. +++-....
T Consensus 503 ~~~~--~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~ 580 (791)
T 3m0c_C 503 VKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580 (791)
T ss_dssp SSEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CeEE--EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence 5432 22222334688999999877777765332 233333221 34677888865554 44445667
Q ss_pred eEEEEE-CCceeeeecc----cCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCC
Q psy16005 156 KISIVE-NGAKVSSLPI----DYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLS 207 (248)
Q Consensus 156 ~i~~~~-~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~ 207 (248)
.|..++ .+.....+.. -..+..+++. +..|+.+ ...+.|...|..+++..
T Consensus 581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred cEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence 788888 4443333321 1223455553 3444444 45678888887776544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.2e-05 Score=59.73 Aligned_cols=187 Identities=13% Similarity=0.032 Sum_probs=109.6
Q ss_pred CCcEEEEe-------CCCCCEEEEeC-Cc-------EEEEEecCC-Ccee-----eeeecCCcceEEEEECc-CCcEEEE
Q psy16005 18 GQPIVLGG-------DPKGKNFLYTN-GN-------SVIIRNIEN-PAIS-----DIYTEHSCAVNVAKYSP-SGFYIAS 75 (248)
Q Consensus 18 ~~v~~~~~-------s~~~~~l~~~~-~~-------~v~v~~~~~-~~~~-----~~~~~~~~~v~~~~~s~-~~~~l~~ 75 (248)
..+..++| +++|+.|+++. .+ .+.+++... +... ..+... .....++++| ++.++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEE
Confidence 35889999 99999777764 21 366665433 2221 223222 2345778899 4555666
Q ss_pred EccCCeEEEEECC-------CCce-----------e-eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC--
Q psy16005 76 GDISGKVRIWDTV-------NKEH-----------I-LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY-- 134 (248)
Q Consensus 76 ~~~dg~i~iwd~~-------~~~~-----------~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-- 134 (248)
-..++.|..+|+. ++.. . ..... +.......++|+|+|+.|+.+.....+|+.+....
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCc
Confidence 6778899999987 4442 0 01122 22345689999999997777765544444422111
Q ss_pred -----------------------------CCc-eeEeC-------CCCCEEEEEcCCCeEEEEECCceeeeeccc-----
Q psy16005 135 -----------------------------EPS-SISLD-------HEHGLVAVGGADSKISIVENGAKVSSLPID----- 172 (248)
Q Consensus 135 -----------------------------~~~-~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----- 172 (248)
.+. .+... +++.++++-..+..|+.++....+.++...
T Consensus 344 ~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~ 423 (496)
T 3kya_A 344 KEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTS 423 (496)
T ss_dssp TEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHH
T ss_pred ceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEeccccccc
Confidence 122 23333 345566666666777777732233333210
Q ss_pred --------------------CCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 173 --------------------YEPSSISLDHE-HGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 173 --------------------~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
..+..++++++ +.++++=..+..|+.++++....
T Consensus 424 ~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 424 LADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred ccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 12567889986 66655556678899999876554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00017 Score=59.27 Aligned_cols=198 Identities=9% Similarity=-0.008 Sum_probs=111.8
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCce-eeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCCCc
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAI-SDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 91 (248)
..+.+..++|++.+..|+.+. .+.|..++++.... ...+...-.....+++.+.++ +.++-...+.|.+.++....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 345678999999888888775 67899898875532 222322235678999998554 45555667899999987654
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeee-
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSL- 169 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 169 (248)
.. ......-.....|+++|.+..|+.+..+ ..+|+.... .|.....+
T Consensus 118 ~~--~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~-----------------------------dG~~~~~l~ 166 (619)
T 3s94_A 118 RK--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM-----------------------------DGSSRFIII 166 (619)
T ss_dssp CE--EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEET-----------------------------TSCSCEEEE
T ss_pred EE--EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEEC-----------------------------CCCceEEEE
Confidence 22 1222223456788888876666554422 122222211 11111111
Q ss_pred -cccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE-cCCCeEEEEECCC
Q psy16005 170 -PIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPD 246 (248)
Q Consensus 170 -~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~ 246 (248)
..-..++.+++++++..|+.+ ...+.|..+|+.......... +.......+++..+ .|+.+ ...+.|...|..+
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED--ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS--EEEEECTTTCSEEEEESSS
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCC
Confidence 112346889999876666555 445778888887644322211 11223356677655 44444 4567888888766
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 244 g 244 (619)
T 3s94_A 244 G 244 (619)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00047 Score=56.82 Aligned_cols=187 Identities=7% Similarity=-0.047 Sum_probs=116.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCc-EEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
...+..++|++.+..|+.+. ++.|+.++++.......+.........+++.+.+. +.++-...+.|.+.++......
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 34678999999888887774 78999999876544443432224567888887544 4455556789999998765422
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC-----------CCCCceeEeCCCCC-EEEEEcCCCeEEEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI-----------DYEPSSISLDHEHG-LVAVGGADSKISIV 160 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 160 (248)
......-.....++++|....|+.+..+ .-+|+.... -..+..+++++++. ++++-...+.|..+
T Consensus 116 --~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 116 --VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp --EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred --EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 1222233567899999976666666532 234444322 23466788888655 44455567788888
Q ss_pred E-CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCC
Q psy16005 161 E-NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSL 206 (248)
Q Consensus 161 ~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~ 206 (248)
+ .+.....+. ....+..+++.. +.++++-...+.|...|..+++.
T Consensus 194 d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 194 NMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp ETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred cCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 8 333222222 223456777764 33444444578888888776654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-06 Score=70.32 Aligned_cols=213 Identities=12% Similarity=-0.000 Sum_probs=118.7
Q ss_pred EEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEE-ccCCeEEEEECCC----CceeeeeeccCCCCCe
Q psy16005 31 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVN----KEHILKNEFHPIGGPI 105 (248)
Q Consensus 31 ~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v 105 (248)
+|+.+..+.|+..++.+.+....+.. ...+.+++|++.+..|+.+ ...+.|+.+++.+ .... ..+...-...
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--~~i~~~~~~P 455 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAP 455 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--CBCCSCC--C
T ss_pred eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--EEEeCCCCCc
Confidence 44555566788888877665554433 3456789999866666655 4567899999875 2211 1111112335
Q ss_pred eEEEEecCCCEEEEEeC--CcEEEEEccC----------CCCCceeEeCCCCCEEEEEc-CC-CeEEEEE-CCceeeeec
Q psy16005 106 KDIAWSPDNQRMISIVE--NGAKVSSLPI----------DYEPSSISLDHEHGLVAVGG-AD-SKISIVE-NGAKVSSLP 170 (248)
Q Consensus 106 ~~~~~~~~~~~l~~~~~--~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~-~~~~~~~~~ 170 (248)
..+++++.+..|+.+.. +.+.+.++.. ...+..++++|.+..|+... .. +.|..++ .+.....+.
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 66888765555555432 3344444321 24567888888655444433 22 6777776 333333221
Q ss_pred --ccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 171 --IDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 171 --~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
.-..++.++++|++..|+.+ ...+.|..+++........... ........|++..+ ..+++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 12347889999976655544 4567899999875432211111 11123445566443 3444445568888888655
Q ss_pred C
Q psy16005 247 F 247 (248)
Q Consensus 247 ~ 247 (248)
+
T Consensus 615 G 615 (699)
T 1n7d_A 615 G 615 (699)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00016 Score=54.97 Aligned_cols=175 Identities=18% Similarity=0.147 Sum_probs=105.5
Q ss_pred ceEEEEECcCCcEEEEE------------ccCCeEEEEECCCCc-eeeeeeccC-----CCCCeeEEEEec--CCC-EEE
Q psy16005 60 AVNVAKYSPSGFYIASG------------DISGKVRIWDTVNKE-HILKNEFHP-----IGGPIKDIAWSP--DNQ-RMI 118 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~------------~~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l~ 118 (248)
....+...|+|..++++ ..+|.|.++|..+.. ......+.+ .......+.+.+ +++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45567778887655554 268999999987431 112223322 224677888766 454 565
Q ss_pred EEeC----CcEEEEEccCC---------------CCCceeEeCCCCCEEEEEc-----------------CCCeEEEEEC
Q psy16005 119 SIVE----NGAKVSSLPID---------------YEPSSISLDHEHGLVAVGG-----------------ADSKISIVEN 162 (248)
Q Consensus 119 ~~~~----~~~~i~~~~~~---------------~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~ 162 (248)
++.. ..+.++++... ..++.+...++|..+++.. ..+.++.++.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 5542 23466665432 2345677788888777654 2356777776
Q ss_pred CceeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCC-CCCCCcccccCCcCeEEEEEcC-CCcEEEEEc
Q psy16005 163 GAKVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNN-KSLSPKAELDHLGPVTDCSFSP-SNEYLVASD 234 (248)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 234 (248)
++.......-..++.++|+||++.|+++. ..+.|+.|++.. ++..........+....+++.+ +|.+.+++.
T Consensus 211 ~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 54332233334578999999999777765 567899999864 2221111112245678889998 588777554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00035 Score=52.73 Aligned_cols=217 Identities=9% Similarity=-0.044 Sum_probs=120.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee----cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT----EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
...+.++.|.+++..++++..+.|.. ..+.++.=.... .....+.++.+++ ++.++ ++..|.|.. ..+.++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCC
Confidence 45789999998888888877776643 334443212111 1244688999986 44444 455665443 2333332
Q ss_pred eeeeecc-CCCCCeeEEEEecCCCEEEEEeCCcEEE-------EEc---cCCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFH-PIGGPIKDIAWSPDNQRMISIVENGAKV-------SSL---PIDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~i-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
-...... .+...+..+.+.++++.++++....+.. |.. .....+..+.+.+++.+++++...+..+-.|
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 1111111 2334577888877777666554333311 221 1223456778888888887765544444445
Q ss_pred C-Cceeeee--cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC---CCCcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 162 N-GAKVSSL--PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS---LSPKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 162 ~-~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
. +..-..+ .....+..+++++++..++++ .+|.+++.+...++ ........+...+.++.+.+++..++++.
T Consensus 191 ~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~- 268 (327)
T 2xbg_A 191 PGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG- 268 (327)
T ss_dssp TTCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-
T ss_pred CCCCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-
Confidence 4 3432222 234456788889988766554 57777776422222 11111012234588999998887666654
Q ss_pred CCeE
Q psy16005 236 HRKV 239 (248)
Q Consensus 236 d~~i 239 (248)
++.+
T Consensus 269 ~g~i 272 (327)
T 2xbg_A 269 AGAL 272 (327)
T ss_dssp TTCE
T ss_pred CCeE
Confidence 5655
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00094 Score=49.96 Aligned_cols=166 Identities=10% Similarity=0.141 Sum_probs=95.6
Q ss_pred ceEEEEECcCCcEEEEEc-cCCeEEEEECCCCceeeeeeccC----CC--CCeeEEEE---ecCCCEEEEEeCCcEEEEE
Q psy16005 60 AVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEHILKNEFHP----IG--GPIKDIAW---SPDNQRMISIVENGAKVSS 129 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~~~~~~~~~i~~ 129 (248)
--.+++|++....++.++ ..++|..||...+.... ..+.. .. ..+..+.| .|+++.+++.....
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~----- 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-VVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK----- 87 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-ECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT-----
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-EecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc-----
Confidence 345788988544555544 78999999997654332 23332 11 13578888 68866666432100
Q ss_pred ccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE-C----Cceeeeeccc--------------CCCceEEEcCCCCEEEEE
Q psy16005 130 LPIDYEPSSISLDHEHGLVAVGGADSKISIVE-N----GAKVSSLPID--------------YEPSSISLDHEHGLVAVG 190 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~----~~~~~~~~~~--------------~~~~~~~~s~~~~~l~~~ 190 (248)
+|...+.. .+.+..+..+| . ++.+....+. ..++.++..++|+..+++
T Consensus 88 ----------af~~~g~~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~ 154 (334)
T 2p9w_A 88 ----------SFNFADQS---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF 154 (334)
T ss_dssp ----------TTCTTSCC---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred ----------cccccccc---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence 00000000 01233444455 2 3333332211 135788899999988877
Q ss_pred cCC-CcEEEEEcCCCCCCCcccc-----cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 191 GAD-SKVHIYELNNKSLSPKAEL-----DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 191 ~~d-~~v~i~d~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
+.. +.|..++....... .+.. ......+.++++|+|+.|++....|.+..+|+.
T Consensus 155 s~~~~~I~rV~pdG~~~~-~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 155 ALGMPAIARVSADGKTVS-TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EESSCEEEEECTTSCCEE-EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CCCCCeEEEEeCCCCEEe-eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 777 77666666544221 1110 112346789999999998888779999999975
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0027 Score=49.15 Aligned_cols=161 Identities=12% Similarity=0.102 Sum_probs=95.5
Q ss_pred CCcEEEEEccCCeEEEEECCCCceeeeeeccC--CCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCC
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHP--IGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHG 146 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 146 (248)
+|..++.+- ++.||.-++..+..-.....+. .-..+..+..+|+|++|+..+..++.+-.++.+..... +++
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~----~~~- 104 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVE----DVS- 104 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCC----CHH-
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCc----ccc-
Confidence 444444432 3677777766433211122221 12357889999999999999999999888874322110 000
Q ss_pred EEEEEcCCCeEEEEECCceeeeecccCCCceEEEcC---CCCEEEEEcCCCcEEEEEcCCCCCCCccc---------ccC
Q psy16005 147 LVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDH---EHGLVAVGGADSKVHIYELNNKSLSPKAE---------LDH 214 (248)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---------~~~ 214 (248)
....-.++.|..+... .....++..+.|+| .+..|++-..|+.|++||+......+... ...
T Consensus 105 ----~~~~~q~~ty~l~~~~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~ 178 (452)
T 3pbp_A 105 ----IQDAFQIFHYSIDEEE--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR 178 (452)
T ss_dssp ----HHHTTEEEEEEGGGCC----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS
T ss_pred ----cccccceeEEEcCCcc--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc
Confidence 0000123334433211 11245678899999 45588888999999999998633222211 012
Q ss_pred CcCeEEEEEcCCCcEEEE--EcCCCeEEE
Q psy16005 215 LGPVTDCSFSPSNEYLVA--SDAHRKVVL 241 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~--~~~d~~i~v 241 (248)
...|.+++|.+++-.|+. .+..|.|+-
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 357889999998876666 447777763
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0025 Score=47.46 Aligned_cols=199 Identities=7% Similarity=0.043 Sum_probs=112.9
Q ss_pred CCCCCEEEEeC---CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC--------------CeEEEEECC
Q psy16005 26 DPKGKNFLYTN---GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS--------------GKVRIWDTV 88 (248)
Q Consensus 26 s~~~~~l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~ 88 (248)
+++|..++... ++.|+..+.+... ...+.. .. +--+++++++|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 35778887764 5678888865444 333432 22 34457889888876543 367777777
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEe---CCcEEEEEccCCCCCc-------eeEeCCCCCEEEEEcC-CCeE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV---ENGAKVSSLPIDYEPS-------SISLDHEHGLVAVGGA-DSKI 157 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~i 157 (248)
.++.. .+.. . ....|+++++.|+... .+...|+.+..+.... ...++++++.|.-.+. ...|
T Consensus 97 g~~~~---~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 97 GHGST---VLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp SCCCE---EEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCCCCSEEETTEEEEECTTTCCE
T ss_pred CCcce---Eeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCceEeeEECCEEEEEeCCCceE
Confidence 66532 2221 1 1236788999999887 4556777765443211 1345567776665544 5677
Q ss_pred EEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCC--CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc
Q psy16005 158 SIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGAD--SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234 (248)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 234 (248)
+..+ .+.....+ ... .....++|++.+|+-...+ ..|..-++...... .+. . ..+ ..|+|++++|+.++
T Consensus 170 y~~~l~g~~~~~l-~~~-~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt-~--~~~--~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 170 YRYDTASQSEALF-YDC-NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT-E--ANI--EHYNVYGSLIFYQR 241 (302)
T ss_dssp EEEETTTTEEEEE-ECS-CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-ECS-C--SCE--EEEEEETTEEEEEE
T ss_pred EEEECCCCCEEEE-eCC-CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe-C--CCc--ceEEECCCEEEEEE
Confidence 7777 33333333 122 2223466999988876543 35666666655432 221 1 223 34778888887652
Q ss_pred C--CCeEEEEEC
Q psy16005 235 A--HRKVVLYRV 244 (248)
Q Consensus 235 ~--d~~i~vw~~ 244 (248)
. .+.|..-++
T Consensus 242 ~~~~~~i~~~~~ 253 (302)
T 3s25_A 242 GGDNPALCVVKN 253 (302)
T ss_dssp CSSSCEEEEEET
T ss_pred CCCCcEEEEEEC
Confidence 2 344444444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0043 Score=47.33 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=95.4
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec---cCCCCCeeEEEEecC---CCEEEEEeC-------CcE
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF---HPIGGPIKDIAWSPD---NQRMISIVE-------NGA 125 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-------~~~ 125 (248)
.....++|.|+|+++++ ..+|.|.+++ +++......+ .........++++|+ +..|+++.. ..+
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34679999999985555 5669999998 3332111111 122356889999998 555555432 222
Q ss_pred EEEEcc-------------C------CCCCceeEeCCCCCEEEEEcC-------------CCeEEEEE-CCc--------
Q psy16005 126 KVSSLP-------------I------DYEPSSISLDHEHGLVAVGGA-------------DSKISIVE-NGA-------- 164 (248)
Q Consensus 126 ~i~~~~-------------~------~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~-~~~-------- 164 (248)
..+++. . ......+.+.|+|.++++.+. .+.|.-++ .+.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 222221 0 113467889999987776432 14555555 221
Q ss_pred -----eeeeecc-cCCCceEEEcC-CCCEEEEEcCCCcE------EEEEcCCCCC----------------CCcccccCC
Q psy16005 165 -----KVSSLPI-DYEPSSISLDH-EHGLVAVGGADSKV------HIYELNNKSL----------------SPKAELDHL 215 (248)
Q Consensus 165 -----~~~~~~~-~~~~~~~~~s~-~~~~l~~~~~d~~v------~i~d~~~~~~----------------~~~~~~~~~ 215 (248)
....+.. ...+..++|+| ++.++++-.....+ .|.-+..+.. .......+.
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 267 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG 267 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC
Confidence 1111111 12367889999 66655543322221 2332332220 011111223
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.....++| .+|..+++.-..+.|...+++
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~ 296 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLE 296 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEE
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEEC
Confidence 34567777 466666665556666666553
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0051 Score=46.83 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=107.3
Q ss_pred cEEEEeCCCCCEEEEe-------------CCcEEEEEecCCC--ceee-eeec-----CCcceEEEEECc--CCc-EEEE
Q psy16005 20 PIVLGGDPKGKNFLYT-------------NGNSVIIRNIENP--AISD-IYTE-----HSCAVNVAKYSP--SGF-YIAS 75 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~-------------~~~~v~v~~~~~~--~~~~-~~~~-----~~~~v~~~~~s~--~~~-~l~~ 75 (248)
.-.+...|+|..++++ .+|.|.++|..+. +... .+.+ ..-....+.+.+ ++. +|+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4567788988777775 4789999998742 2211 1222 123566777765 343 3444
Q ss_pred E-cc--CCeEEEEECCCC--ceeeeeeccCC-CCCeeEEEEecCCCEEEEEeC----------------CcEEEEEccCC
Q psy16005 76 G-DI--SGKVRIWDTVNK--EHILKNEFHPI-GGPIKDIAWSPDNQRMISIVE----------------NGAKVSSLPID 133 (248)
Q Consensus 76 ~-~~--dg~i~iwd~~~~--~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~----------------~~~~i~~~~~~ 133 (248)
+ .. +.+|.+|++..+ .......+.+. -...+.+.+.++|...++... ..-.+|.+...
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 3 22 567888877643 22222233321 246789999999987766531 12355555432
Q ss_pred ---------CCCceeEeCCCCCEEEEE-cCCCeEEEEEC---Cce--eeeecccCCCceEEEcC-CCCEEEEEcCC-CcE
Q psy16005 134 ---------YEPSSISLDHEHGLVAVG-GADSKISIVEN---GAK--VSSLPIDYEPSSISLDH-EHGLVAVGGAD-SKV 196 (248)
Q Consensus 134 ---------~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~---~~~--~~~~~~~~~~~~~~~s~-~~~~l~~~~~d-~~v 196 (248)
..++.++++|+++.+.++ +..+.|..|+. +.. ...+.....+..+++++ +|++.+++..+ +.|
T Consensus 212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHH
T ss_pred eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEE
Confidence 235678999999866654 46788888882 322 12333445577899999 59877765433 234
Q ss_pred EEEEc
Q psy16005 197 HIYEL 201 (248)
Q Consensus 197 ~i~d~ 201 (248)
..|+.
T Consensus 292 ~~~~P 296 (355)
T 3sre_A 292 FFYDA 296 (355)
T ss_dssp HSCCT
T ss_pred EEECC
Confidence 43443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0046 Score=45.83 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=105.3
Q ss_pred CCCEEEEeC-C------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCCc--
Q psy16005 28 KGKNFLYTN-G------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKE-- 91 (248)
Q Consensus 28 ~~~~l~~~~-~------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~-- 91 (248)
++..++.|+ . ..+.+||..+.+-... +.........+. .++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455666665 1 3788899877653321 111111112222 356777887755 468999998876
Q ss_pred -eeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc------EEEEEccCCC----------CCceeEeCCCCCEEEEEcCC
Q psy16005 92 -HILKNEFHPIGGPIKDIAWSPDNQRMISIVENG------AKVSSLPIDY----------EPSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 92 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (248)
......++........+. .+++.++.++.++ +.+++..... .........++++++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCC
Confidence 433233322222222222 2566666665322 3444443211 00111112256677776654
Q ss_pred -----CeEEEEECCceeee-ec-ccCCC-ceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCccccc-CCcCeEE
Q psy16005 155 -----SKISIVENGAKVSS-LP-IDYEP-SSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELD-HLGPVTD 220 (248)
Q Consensus 155 -----~~i~~~~~~~~~~~-~~-~~~~~-~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~-~~~~v~~ 220 (248)
..+..||....... +. ..... ...+..-++++++.|+.+ ..+.+||+.+.+-....... .......
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 249 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA 249 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeE
Confidence 35777884332222 11 11111 111222356777777754 46899999876532111111 1111222
Q ss_pred EEEcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 221 CSFSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 221 ~~~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
+.+ +++.++.|+.+ ..+.+||+++.
T Consensus 250 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 250 TVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 223 67777777654 46788888764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00099 Score=51.49 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=76.5
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCc------------eeeeeec------CCcceEEEEECc---CCcEEEEE
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPA------------ISDIYTE------HSCAVNVAKYSP---SGFYIASG 76 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~------------~~~~~~~------~~~~v~~~~~s~---~~~~l~~~ 76 (248)
..+..+..||+|++||..++..|.|-.+..+. ..+.+.- ...+|..+.|+| .+..|++-
T Consensus 66 ~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 46778999999999999999999998887321 0112221 246799999999 45689999
Q ss_pred ccCCeEEEEECCCCceeee--------eeccCCCCCeeEEEEecCCCEEEEEe--CCc
Q psy16005 77 DISGKVRIWDTVNKEHILK--------NEFHPIGGPIKDIAWSPDNQRMISIV--ENG 124 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~ 124 (248)
..|+.|++||+........ +........|.+++|.+++-.|...+ ++|
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~G 203 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGG 203 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSC
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCC
Confidence 9999999999986322111 11122336788999999887777755 444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.013 Score=48.22 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=109.2
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECc-CCcEEEEEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSP-SGFYIASGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+.+++|.+.+..|+.+. .+.|+.++++.......+...-.....+++.+ .+++.++-+..+.|.+.++......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~- 427 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK- 427 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE-
Confidence 4577899998777777664 77899998876444333333334567888887 4455556566789999998765421
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC------------CCCCceeEeCCCCCE-EEEEcCCCeEEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI------------DYEPSSISLDHEHGL-VAVGGADSKISIV 160 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 160 (248)
......-....+++++|....|+.+... ..+|+.... -..+..+++++++.. +++-...+.|..+
T Consensus 428 -~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~ 506 (619)
T 3s94_A 428 -ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVM 506 (619)
T ss_dssp -EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred -EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEE
Confidence 2222233568999999975566555432 234443322 134567888875544 4454566788888
Q ss_pred E-CCceeeeec--ccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCC
Q psy16005 161 E-NGAKVSSLP--IDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNK 204 (248)
Q Consensus 161 ~-~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~ 204 (248)
+ .+...+.+. .-..+..+++..+ .|+.+. ..+.|...|..++
T Consensus 507 ~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 507 NTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp ESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred ecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence 7 343333321 1223556666543 444443 4456766666665
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0028 Score=44.50 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=62.4
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcc--------eEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCA--------VNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
..+..++|+|+|.+.++ .++.++-.+..+.....-+ +.... ..++.|.|+|.+.++ .||.|.-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~-~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWM-GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHH-HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCccccc-ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999997777 8788777776543221111 11122 478999999987777 569998887643
Q ss_pred Ccee-e--e-eec-cCCCCCeeEEEEecCCCEEEEE
Q psy16005 90 KEHI-L--K-NEF-HPIGGPIKDIAWSPDNQRMISI 120 (248)
Q Consensus 90 ~~~~-~--~-~~~-~~~~~~v~~~~~~~~~~~l~~~ 120 (248)
...- . . ..+ ..--..+..+.+.|+|...++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 2211 0 0 001 1111467889999999877776
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.015 Score=45.90 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=63.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCC-cEEEEEecCCCceee--eeec------CCcceEEEEECcC---CcEEEEEcc------
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNG-NSVIIRNIENPAISD--IYTE------HSCAVNVAKYSPS---GFYIASGDI------ 78 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~-~~v~v~~~~~~~~~~--~~~~------~~~~v~~~~~s~~---~~~l~~~~~------ 78 (248)
......++|.|+|+++++-.. +.|++++..+++... .+.. .......++|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346789999999998888765 578888765554322 1211 2356779999995 455544432
Q ss_pred -------CCeEEEEECCCCc------eeeeeecc-CCCCCeeEEEEecCCCEEEEEeC
Q psy16005 79 -------SGKVRIWDTVNKE------HILKNEFH-PIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 79 -------dg~i~iwd~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
...|.-++...+. ......+. ........|+|.|||++.++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1245555543221 11111122 11234789999999987777654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.59 E-value=0.035 Score=49.18 Aligned_cols=222 Identities=11% Similarity=0.066 Sum_probs=121.7
Q ss_pred cEEEEeCCCCCEEEEeC---CcEEEEEecCCC------ceeeeeecCCcceEEEEECcC----CcEEEEEc---cCCeEE
Q psy16005 20 PIVLGGDPKGKNFLYTN---GNSVIIRNIENP------AISDIYTEHSCAVNVAKYSPS----GFYIASGD---ISGKVR 83 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~---~~~v~v~~~~~~------~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~---~dg~i~ 83 (248)
..++.+-.+| +++.|+ |..+.-|+.... +.+..+ ..-++|.+++.... ...|++++ .+|.++
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLR 406 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEE
Confidence 3566666666 555554 445555543221 223334 34578888887532 23455443 568888
Q ss_pred EEECCCC-ceeeeeeccCCCCCeeEEEEe---cCCCEEEEEeCCcEEEEEccCCCCCcee---EeCCCCCEEEEEcC--C
Q psy16005 84 IWDTVNK-EHILKNEFHPIGGPIKDIAWS---PDNQRMISIVENGAKVSSLPIDYEPSSI---SLDHEHGLVAVGGA--D 154 (248)
Q Consensus 84 iwd~~~~-~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~--~ 154 (248)
+..-.-+ +......+++ ...++.+... +.+.+|+.+..+...+..+..+ .+..+ -|..+...++++.- +
T Consensus 407 ~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~~~ 484 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGE-EVEETELMGFVDDQQTFFCGNVAHQ 484 (1158)
T ss_dssp EEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETT-EEEEECCTTCCSSSCEEEEEEETTT
T ss_pred EEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCC-cccccccccccCCCCcEEEEEcCCC
Confidence 8764322 1122233332 2445555432 2356888888888888776432 12111 23344555655532 2
Q ss_pred C-------eEEEEEC--Cceeeeeccc--CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE
Q psy16005 155 S-------KISIVEN--GAKVSSLPID--YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF 223 (248)
Q Consensus 155 ~-------~i~~~~~--~~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~ 223 (248)
. .|++.+. ...+.....+ ..+...+.+ +..++.++ ++.+..+++..++........-...|.|+++
T Consensus 485 ~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i 561 (1158)
T 3ei3_A 485 QLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDI 561 (1158)
T ss_dssp EEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEEC
T ss_pred eEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEe
Confidence 2 2344442 2234334322 345555544 34566664 6778888887654322222234567999999
Q ss_pred cCC------CcEEEEEcC-CCeEEEEECCCCC
Q psy16005 224 SPS------NEYLVASDA-HRKVVLYRVPDFE 248 (248)
Q Consensus 224 s~~------~~~l~~~~~-d~~i~vw~~~~~~ 248 (248)
.|. +++++.|.. |++++|+++++.+
T Consensus 562 ~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 562 TPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp CCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred ecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 864 368999986 9999999997653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.021 Score=44.46 Aligned_cols=204 Identities=12% Similarity=0.136 Sum_probs=123.8
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
+..|.|.|+.++..+....-. --+.-.+|..+.+|.-. ..++.|+|+++.+.+....+. ..|..-.|-. .+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~---e~VvfWkWis-~~~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS-LNT 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEEEE-TTE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC---CCceEEEecC-CCe
Confidence 458889998876654322211 12344788888777654 679999999998877555553 4677777764 467
Q ss_pred EEEEeCCcEEEEEccCCCCC---------------ceeEeCCCCCEEEEEc---C----CCeEEEEECCc-eeeeecccC
Q psy16005 117 MISIVENGAKVSSLPIDYEP---------------SSISLDHEHGLVAVGG---A----DSKISIVENGA-KVSSLPIDY 173 (248)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~----~~~i~~~~~~~-~~~~~~~~~ 173 (248)
|+...+..+.-|++..+..+ .....+++.+.++..+ . .|.+.+|...+ .-+.++.+.
T Consensus 119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha 198 (494)
T 1bpo_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA 198 (494)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE
T ss_pred EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee
Confidence 88888888888888654333 2334567777665432 1 35677777333 333333221
Q ss_pred CC-ceEEEc--C-CCCEEEEEcC---CCcEEEEEcCCC---CCCC-c----ccc---cCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 174 EP-SSISLD--H-EHGLVAVGGA---DSKVHIYELNNK---SLSP-K----AEL---DHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 174 ~~-~~~~~s--~-~~~~l~~~~~---d~~v~i~d~~~~---~~~~-~----~~~---~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.. ..+... + ....++.+.. .+.++|.++... .... . ... .-.+-..++..|+.-..++..+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 11 111111 1 1124444443 268999998543 1100 0 001 12345677888998888999999
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
-|.|++||++|+.
T Consensus 279 ~G~i~lyDleTgt 291 (494)
T 1bpo_A 279 YGYIHLYDLETGT 291 (494)
T ss_dssp TSEEEEEETTTCC
T ss_pred CceEEEEecccce
Confidence 9999999999873
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.028 Score=44.55 Aligned_cols=106 Identities=15% Similarity=0.057 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCC--EEEEeCCcEEEEEecCCCc---eeeeee-----c----CCcceEEEEECcC----CcEEEEEcc-
Q psy16005 18 GQPIVLGGDPKGK--NFLYTNGNSVIIRNIENPA---ISDIYT-----E----HSCAVNVAKYSPS----GFYIASGDI- 78 (248)
Q Consensus 18 ~~v~~~~~s~~~~--~l~~~~~~~v~v~~~~~~~---~~~~~~-----~----~~~~v~~~~~s~~----~~~l~~~~~- 78 (248)
.....|+|.|||. ++++-..|.|++++..... .+..+. + .......++|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4678999999996 6666668999999754221 111111 1 1356789999996 443333221
Q ss_pred -C----------CeEEEEECCCC----------ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC
Q psy16005 79 -S----------GKVRIWDTVNK----------EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN 123 (248)
Q Consensus 79 -d----------g~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 123 (248)
+ ..|.-|.+..+ +.+...........-..|+|.|||.+.++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444555421 111111111222346789999999888877654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.022 Score=42.28 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=104.8
Q ss_pred CEEEEeC---CcEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC----CeEEEEECCCCceeeeeeccC
Q psy16005 30 KNFLYTN---GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS----GKVRIWDTVNKEHILKNEFHP 100 (248)
Q Consensus 30 ~~l~~~~---~~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~ 100 (248)
.+++.|+ ...+.+||..+.+-... +.........+. -++++++.|+.+ ..+.+||..+++......++.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 3445554 45788999887653321 111111122222 266777887755 578899998876543333332
Q ss_pred CCCCeeEEEEecCCCEEEEEeCC-------cEEEEEccCCCC----------CceeEeCCCCCEEEEEcC---------C
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVEN-------GAKVSSLPIDYE----------PSSISLDHEHGLVAVGGA---------D 154 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~-------~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~ 154 (248)
.......+. -+++.++.++.+ .+.+++...... ........++++++.|+. -
T Consensus 91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 222222222 266666666543 234555432210 011111235566666653 3
Q ss_pred CeEEEEECCceee-eec-ccCC--CceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCccccc-CCcCeEEEEEc
Q psy16005 155 SKISIVENGAKVS-SLP-IDYE--PSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELD-HLGPVTDCSFS 224 (248)
Q Consensus 155 ~~i~~~~~~~~~~-~~~-~~~~--~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s 224 (248)
..+..||...... .+. .... -.+++.. ++++++.|+.+ ..+.+||+.+.+-....... .......+.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 246 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV- 246 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence 4477788433222 121 1111 1222222 56677777653 35899999876432111111 1112233333
Q ss_pred CCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 225 PSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 225 ~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
+++.++.|+.+ ..+.+||+.+.
T Consensus 247 -~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 247 -GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp -TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred -CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 67777777643 56888988764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.014 Score=41.03 Aligned_cols=160 Identities=11% Similarity=-0.080 Sum_probs=87.2
Q ss_pred CcEEEEEccCCeEEEEECCCCce---eeeeeccCC--CCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC----------
Q psy16005 70 GFYIASGDISGKVRIWDTVNKEH---ILKNEFHPI--GGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY---------- 134 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~---------- 134 (248)
...|+....| +++.=....+.. .......+. =..+..++|+|+|...++ .++ .+|..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G--~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LND--KIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETT--EEEEESCCCSTTCCHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCC--eEEEECCCCCCcccccccc
Confidence 3455555666 555544444331 001111111 246789999998886666 443 355544321
Q ss_pred -CC--------ceeEeCCCCCEEEEEcCCCeEEEEECCc--eeee------e-c-ccCCCceEEEcCCCCEEEEEcCCCc
Q psy16005 135 -EP--------SSISLDHEHGLVAVGGADSKISIVENGA--KVSS------L-P-IDYEPSSISLDHEHGLVAVGGADSK 195 (248)
Q Consensus 135 -~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~------~-~-~~~~~~~~~~s~~~~~l~~~~~d~~ 195 (248)
.+ ..+.+.+++.+.++ .||.|+-++... ...- + . .-..+..+.+.|+|.+.++. |+.
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 12 57788999999888 558888776311 1100 0 0 01245789999999887777 776
Q ss_pred EEEEEcCCCCCCC------cccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 196 VHIYELNNKSLSP------KAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 196 v~i~d~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
++-....+..... ..-...-..-+-+.|.|++...+.. ++.+
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5433222221110 0110222345567799999877666 6643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.024 Score=41.98 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=102.9
Q ss_pred CCCEEEEeC-C----cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCCceeee
Q psy16005 28 KGKNFLYTN-G----NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKEHILK 95 (248)
Q Consensus 28 ~~~~l~~~~-~----~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~ 95 (248)
++..++.|+ + ..+..||+.+.+-... +......-..+.+ ++++++.|+.+ ..+.+||..+.+....
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555554 2 4688889877653321 1111111112222 67777887754 3588999988764433
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCc------EEEEEccCCC---------CC-ceeEeCCCCCEEEEEcCC-----
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENG------AKVSSLPIDY---------EP-SSISLDHEHGLVAVGGAD----- 154 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------~~i~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~----- 154 (248)
..++...... +++. -+++.++.++.++ +.++++.... .. ......-++++++.|+.+
T Consensus 93 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTL-GAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred CCCCccccce-EEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 3333222222 2222 2566667666432 2344432211 00 011112255666666542
Q ss_pred --CeEEEEECCceeee-e---cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCcccccC-CcCeEEEE
Q psy16005 155 --SKISIVENGAKVSS-L---PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELDH-LGPVTDCS 222 (248)
Q Consensus 155 --~~i~~~~~~~~~~~-~---~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~-~~~v~~~~ 222 (248)
..+..||....... + +....-.+++ .-++++++.|+.+ ..+.+||+.+.+-........ ......+.
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 34777884332221 1 1111112222 2356777777754 369999998764321111111 11112222
Q ss_pred EcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 223 FSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 223 ~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
+ +++.++.|+.+ ..+.+||+.+.
T Consensus 250 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 250 V--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2 67777777654 35888988764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.025 Score=42.07 Aligned_cols=200 Identities=9% Similarity=0.004 Sum_probs=106.4
Q ss_pred EEeCCCCCEEEEeC--C-------------cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc--cC--CeEE
Q psy16005 23 LGGDPKGKNFLYTN--G-------------NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD--IS--GKVR 83 (248)
Q Consensus 23 ~~~s~~~~~l~~~~--~-------------~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--g~i~ 83 (248)
--++++|.+|+.+. + ..|+..+++..+... +... . +..|+++++.|+-.. .+ ..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 34688999998875 2 367777877665433 3222 1 236788888888765 33 4555
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCC--------ceeEeCCCCCEEEEEcCC-
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEP--------SSISLDHEHGLVAVGGAD- 154 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~- 154 (248)
.-++...+. ..+..+.. .+++++++.|+..+.+...|+.++....- ....+.|++..++-....
T Consensus 133 ~~~~dGs~~---~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 133 RIRIDGEEK---KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EEETTSCCC---EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEEEEEEEETTEEEEEEGGG
T ss_pred EEECCCCCe---EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCccceeeecCCEEEEEEcCC
Confidence 556654432 22222222 45688899988887644455554432211 112344666665544322
Q ss_pred -CeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEc--CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEE
Q psy16005 155 -SKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGG--ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 155 -~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 230 (248)
..|..-+ .+.....+.. .. ...++|++.+|..+. ..+.|..-++..... ..+..+ .+. .+++.+.+|
T Consensus 206 ~~~I~~~~ldG~~~~~Lt~-~~--~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~~~---~~~--~i~i~~d~I 276 (302)
T 3s25_A 206 DNAIVHVNINNPNPVVLTE-AN--IEHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELAKG---EFC--NINVTSQYV 276 (302)
T ss_dssp TTEEEEECSSSCCCEECSC-SC--EEEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEEES---CEE--EEEECSSEE
T ss_pred CcEEEEEECCCCCeEEEeC-CC--cceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEeeCC---ccc--eEEEeCCEE
Confidence 2344433 3333333321 11 245888899887653 245677777765443 222212 233 345567777
Q ss_pred EEEc-CCCeEEEEE
Q psy16005 231 VASD-AHRKVVLYR 243 (248)
Q Consensus 231 ~~~~-~d~~i~vw~ 243 (248)
+... ..+.|..-+
T Consensus 277 y~td~~~~~i~~~~ 290 (302)
T 3s25_A 277 YFTDFVSNKEYCTS 290 (302)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCeEEEEE
Confidence 6664 334444433
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0049 Score=46.51 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=76.8
Q ss_pred cEEEEEccCCeEEEEECCCCceeeeeeccCCCCCe-----------eEEEE--ecCCCEEEEEeCCcEEEEEccCCCCCc
Q psy16005 71 FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPI-----------KDIAW--SPDNQRMISIVENGAKVSSLPIDYEPS 137 (248)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------~~~~~--~~~~~~l~~~~~~~~~i~~~~~~~~~~ 137 (248)
..++.++.||.|.-.|..+|+.............+ ..+.. ..||+..+....+|...|.+..+..+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888899999999999988876655443101111 11223 246777666667777777765432221
Q ss_pred e--eEeC-----------CCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCc--------eEEEc-----CCCCEEEE
Q psy16005 138 S--ISLD-----------HEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPS--------SISLD-----HEHGLVAV 189 (248)
Q Consensus 138 ~--~~~~-----------~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~--------~~~~s-----~~~~~l~~ 189 (248)
. +... ..+..+++++.++.+...| +|+.+..+....... |.... -.+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 1 1111 1456788899999999999 788888876543211 11111 12346777
Q ss_pred EcCCCcEEEEE
Q psy16005 190 GGADSKVHIYE 200 (248)
Q Consensus 190 ~~~d~~v~i~d 200 (248)
+..+..+.+.+
T Consensus 171 g~~~y~v~~~~ 181 (339)
T 2be1_A 171 GKTIFELGIHS 181 (339)
T ss_dssp EEEEEECEECC
T ss_pred ecceEEEEEEC
Confidence 77666666666
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.031 Score=41.50 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=106.0
Q ss_pred CCCCCEEEEeC-----CcEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEcc----C-----CeEEEEECCC
Q psy16005 26 DPKGKNFLYTN-----GNSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDI----S-----GKVRIWDTVN 89 (248)
Q Consensus 26 s~~~~~l~~~~-----~~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~iwd~~~ 89 (248)
.-++.+++.|+ -..+.+||..+.+-... +.........+.+ ++++++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 33566666665 24788999877654322 1111111112222 6677777775 2 3588999988
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeC------CcEEEEEccCCC-----------CCceeEeCCCCCEEEEEc
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE------NGAKVSSLPIDY-----------EPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 152 (248)
.+......++..........+ +++.++.++. +.+.+++..... .-..... -++.+++.|+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 176 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGG 176 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeC
Confidence 764332223222222222222 5666666552 234555543211 0111111 2566777766
Q ss_pred CC-----CeEEEEECCceeeee----cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCcccccC-CcC
Q psy16005 153 AD-----SKISIVENGAKVSSL----PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELDH-LGP 217 (248)
Q Consensus 153 ~~-----~~i~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~-~~~ 217 (248)
.+ ..+..||........ +....-.+++.. ++++++.|+.+ ..+.+||+.+.+-........ ...
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 54 357778843322221 111111222222 66777777654 469999998764321111111 111
Q ss_pred eEEEEEcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
...+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 122222 56777777643 46788888764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.045 Score=41.71 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=37.1
Q ss_pred cceEEEEECcCCc-EEEEEccCCeEEEEECCCCceeeeeec----cCCCCCeeEEEEecC---CCEEEEE
Q psy16005 59 CAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKEHILKNEF----HPIGGPIKDIAWSPD---NQRMISI 120 (248)
Q Consensus 59 ~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~ 120 (248)
.....++|.|+|+ +++ +...|.|++++...........+ .........++++|+ +..|+.+
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 3467999999998 555 45679999998542211000111 112346789999996 4555444
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.16 E-value=0.12 Score=45.94 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=113.8
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeee-ecCCcceEEEEECcC------CcEEEEEcc-CCeEEEEECCC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPS------GFYIASGDI-SGKVRIWDTVN 89 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~------~~~l~~~~~-dg~i~iwd~~~ 89 (248)
..|...+.+. ..++.+.++.+..+.++.++..... ..-...|.|+++.|. +++++.|.. |++++|+++.+
T Consensus 514 ~~I~~As~n~--~~vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS--SEEEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC--CEEEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3455555543 3455555677877777665432211 133568999999863 478999986 99999999987
Q ss_pred CceeeeeeccCCCCCeeEEEEec--CCCEEEEEeCCcEEE-EEccC-------------CCCCcee-EeCCCCCEEEEEc
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSP--DNQRMISIVENGAKV-SSLPI-------------DYEPSSI-SLDHEHGLVAVGG 152 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~~i-~~~~~-------------~~~~~~~-~~~~~~~~~~~~~ 152 (248)
.+.+....+.. ...+.++.+.. ...+|..+-.+|..+ +.++. +..+..+ .+...+..-+.+.
T Consensus 592 l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 592 FELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp CCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred CCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence 66554444432 23445554432 335777777888632 22221 1112222 2222333222333
Q ss_pred CCCeEEEEECCceeeeecccC-CCc-eEEEcCC--CCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc
Q psy16005 153 ADSKISIVENGAKVSSLPIDY-EPS-SISLDHE--HGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 153 ~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~s~~--~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 228 (248)
.+....++.....+...+... .+. ...|+.. ..-++..+ ++.++|..+...........+-...++.++++|+.+
T Consensus 671 s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~ 749 (1158)
T 3ei3_A 671 SDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQ 749 (1158)
T ss_dssp SSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGT
T ss_pred CCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCC
Confidence 344444444222222222222 222 2334322 12344444 445999988654332222223456789999999888
Q ss_pred EEEEEc
Q psy16005 229 YLVASD 234 (248)
Q Consensus 229 ~l~~~~ 234 (248)
.++.+.
T Consensus 750 ~~~v~~ 755 (1158)
T 3ei3_A 750 CFGVLS 755 (1158)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.051 Score=41.42 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=97.8
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec---cCCCCCeeEEEEecC---CCEEEEEeC---------C
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF---HPIGGPIKDIAWSPD---NQRMISIVE---------N 123 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~---------~ 123 (248)
.....++|.|+|+++++ ..+|.|++++. +++ .....+ .........++++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44678999999985555 56699999973 443 111111 112356889999997 455544432 1
Q ss_pred cEEEEEccC-------------------CCCCceeEeCCCCCEEEEEcC-------------CCeEEEEE-CCce-----
Q psy16005 124 GAKVSSLPI-------------------DYEPSSISLDHEHGLVAVGGA-------------DSKISIVE-NGAK----- 165 (248)
Q Consensus 124 ~~~i~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~-~~~~----- 165 (248)
.+..++... ......+.+.|+|.++++.+. .+.|.-++ .++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 222222111 112456888999987776432 24555555 2320
Q ss_pred ---eeeec-ccCCCceEEEcC-CCCEEEEEcCCC---cEEEEEcCCCCC----------------CCcccc-cCCcCeEE
Q psy16005 166 ---VSSLP-IDYEPSSISLDH-EHGLVAVGGADS---KVHIYELNNKSL----------------SPKAEL-DHLGPVTD 220 (248)
Q Consensus 166 ---~~~~~-~~~~~~~~~~s~-~~~~l~~~~~d~---~v~i~d~~~~~~----------------~~~~~~-~~~~~v~~ 220 (248)
...+. ....+..++|+| ++.++++-...+ .|.+.. .+.. ...... .....+..
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 11111 123467899999 666555433222 244332 2210 011111 11235778
Q ss_pred EEEc-------CCCcEEEEEcCCCeEEEEECC
Q psy16005 221 CSFS-------PSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 221 ~~~s-------~~~~~l~~~~~d~~i~vw~~~ 245 (248)
++|. .+|.++++.-..+.|...+++
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence 8883 467776666666777777765
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.062 Score=41.92 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=130.1
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 101 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (248)
+.-.+|..+.+|.-.+..+.++|+++.+.+..+.-. ..|.-=.|-.+. .|+..+ +..|+-|++..... +...+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~-P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ-PVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCC-CEEEEECC
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCC-chhheecc
Confidence 556789888888878899999999998887766543 455555565433 444433 45899999975332 22333333
Q ss_pred ----CCCeeEEEEecCCCEEEEEe---CCc-----EEEEEccCCCC----CceeEe---CCCC-----CEEEEEcC---C
Q psy16005 102 ----GGPIKDIAWSPDNQRMISIV---ENG-----AKVSSLPIDYE----PSSISL---DHEH-----GLVAVGGA---D 154 (248)
Q Consensus 102 ----~~~v~~~~~~~~~~~l~~~~---~~~-----~~i~~~~~~~~----~~~~~~---~~~~-----~~~~~~~~---~ 154 (248)
...|.....+++.+.++..+ .++ +.+|..+.... -...+| ..+| .++..+.. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 35677777888999887665 222 35565542210 111111 1111 23333333 3
Q ss_pred CeEEEEECCce--------eeeecccC-------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 155 SKISIVENGAK--------VSSLPIDY-------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 155 ~~i~~~~~~~~--------~~~~~~~~-------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+++.+.+.+.. ........ -+.++..|+....+..-+.-|.+++||+.++.++..-.. ....|.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI-s~~~iF 304 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIF 304 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc-cCCceE
Confidence 67888874322 11111111 146788888888888889999999999999988655442 334555
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
.-+-.....-++.....|.|.--.+
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEE
T ss_pred EecccCCCCcEEEEccCceEEEEEE
Confidence 5454444444555556666654443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.06 Score=40.85 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=41.6
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec----cCCCCCeeEEEEecC---CCEEEE
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF----HPIGGPIKDIAWSPD---NQRMIS 119 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~ 119 (248)
-.....++|.|+|+++++--..|.|++++..+++......+ .........|+++|+ +..|+.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 34568999999999777765589999998765553221111 123457889999995 344444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.19 Score=45.36 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=109.2
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 101 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (248)
+.-.+|..+.+|.-.+.++.|+|+++.+.+..+.- ..+|.-=.|-.+. .|+..+ +..|.-|++.... .+...+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s-~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-QPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCC-ccHHHHhcc
Confidence 34468888888887889999999998777665543 4456655665433 343333 4579999997532 222333333
Q ss_pred ----CCCeeEEEEecCCCEEEEEeC---C-----cEEEEEccCCCC---------CceeEe--CC-CCCEEEEEcC---C
Q psy16005 102 ----GGPIKDIAWSPDNQRMISIVE---N-----GAKVSSLPIDYE---------PSSISL--DH-EHGLVAVGGA---D 154 (248)
Q Consensus 102 ----~~~v~~~~~~~~~~~l~~~~~---~-----~~~i~~~~~~~~---------~~~~~~--~~-~~~~~~~~~~---~ 154 (248)
...|....-+++.+.++..+- + .+.++....... -..+.. .+ ...++..+.. .
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777778888888876652 1 235565532211 000111 11 1223332222 3
Q ss_pred CeEEEEECCce-----e---eeecccC-------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc
Q psy16005 155 SKISIVENGAK-----V---SSLPIDY-------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 155 ~~i~~~~~~~~-----~---~~~~~~~-------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 210 (248)
+++.+.+.+.. . ....... -+.++..++....+..-+.-|.+++||+.++..+..-
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 67887773322 0 0111111 1456778887788888889999999999999876443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.022 Score=43.00 Aligned_cols=177 Identities=8% Similarity=-0.033 Sum_probs=85.9
Q ss_pred CCEEEEeCCcEEEEEecCCCceeeeeecC-CcceEEEEEC--c-CCcEEEEE-ccCCeEEEEECCCCceeeeeeccC--C
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAISDIYTEH-SCAVNVAKYS--P-SGFYIASG-DISGKVRIWDTVNKEHILKNEFHP--I 101 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s--~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~--~ 101 (248)
+..++.+.||.|+-.|..+|+..-.+... ..++....-. + ++..++.. +.||.+..++..+|........+. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 33444445999999999999888776543 1222221100 1 23334443 689999999988875443332221 1
Q ss_pred CCCeeE------------------EEEecCCCEEEEEeCCcEEEEEccCCCCCc--------eeEeC-----CCCCEEEE
Q psy16005 102 GGPIKD------------------IAWSPDNQRMISIVENGAKVSSLPIDYEPS--------SISLD-----HEHGLVAV 150 (248)
Q Consensus 102 ~~~v~~------------------~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------~~~~~-----~~~~~~~~ 150 (248)
..++.. +.=+.+++..+.-...|..+|......... +.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111211 111223444444446677888887654321 11110 11345555
Q ss_pred EcCCCeEEEEE-CCceeeeeccc----CCCc-----eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 151 GGADSKISIVE-NGAKVSSLPID----YEPS-----SISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 151 ~~~~~~i~~~~-~~~~~~~~~~~----~~~~-----~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+..+..+.+.+ +++ +...... ..+. .-..+.|+.+ ++++.||.|.-+|..+++..
T Consensus 171 g~~~y~v~~~~~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 171 GKTIFELGIHSYDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEECEECCTTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred ecceEEEEEECCCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 55555555544 221 2111100 0000 0011234555 44677888888888777653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.19 Score=45.25 Aligned_cols=204 Identities=12% Similarity=0.116 Sum_probs=118.8
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
+..|.|.|+.++..+.... -.--+.-.+|..+.+|.-. ..++.|+|+++.+.+....+ ..+|.--.|- +.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~---~e~VvfWkWi-s~~~ 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWI-SLNT 118 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc---CCCceEEEec-CCCe
Confidence 3478888888765442211 1122344788877777654 67999999998876644444 3467666776 3567
Q ss_pred EEEEeCCcEEEEEccCCCC---------------CceeEeCCCCCEEEEEc-------CCCeEEEEECCcee-eeecccC
Q psy16005 117 MISIVENGAKVSSLPIDYE---------------PSSISLDHEHGLVAVGG-------ADSKISIVENGAKV-SSLPIDY 173 (248)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~-~~~~~~~ 173 (248)
|+..++..+.-|++..+.. +.....+++.+.++..+ -.|.+.+|...+.+ +.+..+.
T Consensus 119 l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha 198 (1630)
T 1xi4_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA 198 (1630)
T ss_pred eEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhH
Confidence 8888888899999854322 23344567777665432 34677777733322 2222111
Q ss_pred C-CceEEE--cC-CCCEEEEEcC---CCcEEEEEcCCC---CCC------Cccccc--CCcCeEEEEEcCCCcEEEEEcC
Q psy16005 174 E-PSSISL--DH-EHGLVAVGGA---DSKVHIYELNNK---SLS------PKAELD--HLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 174 ~-~~~~~~--s~-~~~~l~~~~~---d~~v~i~d~~~~---~~~------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
. ...+.. ++ ....++.+.. .+.++|.++... ... .....+ -..-..++..|+.-..++..+.
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 1 011111 11 1223333322 267899888543 110 011111 1334566788888888888899
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
-|.+.+||+.|+.
T Consensus 279 ~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 279 YGYIHLYDLETGT 291 (1630)
T ss_pred CceEEEEecccch
Confidence 9999999999873
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.1 Score=39.52 Aligned_cols=92 Identities=9% Similarity=0.098 Sum_probs=47.7
Q ss_pred CCCEEEEeC--CcEEEEEecCC--Cceee--eee-cCCcceEEEEECcCCcEEEEEcc-C---------CeEEEEECCCC
Q psy16005 28 KGKNFLYTN--GNSVIIRNIEN--PAISD--IYT-EHSCAVNVAKYSPSGFYIASGDI-S---------GKVRIWDTVNK 90 (248)
Q Consensus 28 ~~~~l~~~~--~~~v~v~~~~~--~~~~~--~~~-~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~iwd~~~~ 90 (248)
++.+++.|+ .+.+.++|..+ .+-.. .+. .......++.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 566666665 56899999864 22211 111 11111122222 5677777776 2 46889999887
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
+......+.. .......+...+++.++.++.
T Consensus 97 ~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~ 127 (357)
T 2uvk_A 97 SWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGV 127 (357)
T ss_dssp EEEECSCCCS-SCCSSEEEEEETTEEEEEECC
T ss_pred cEEECCCCCC-cccccceEEEECCEEEEEeCc
Confidence 6443222221 111112122256777777764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.13 Score=40.58 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=40.4
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccC------CCCCeeEEEEecC---CCEEEEEe
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHP------IGGPIKDIAWSPD---NQRMISIV 121 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~ 121 (248)
....+++|.|+|+++++-...+.|++++..++.......+.. .......|+|+|+ +..|+++.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 356799999999977775544578888866554322222221 2356779999996 55555443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.16 Score=41.03 Aligned_cols=208 Identities=10% Similarity=0.043 Sum_probs=120.9
Q ss_pred CcEEEEEecCCCceeeeeecC-------------------------CcceE--EEEECc---CCcEEEEEc-cCCeEEEE
Q psy16005 37 GNSVIIRNIENPAISDIYTEH-------------------------SCAVN--VAKYSP---SGFYIASGD-ISGKVRIW 85 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~-------------------------~~~v~--~~~~s~---~~~~l~~~~-~dg~i~iw 85 (248)
.|.++|+-+.+++.+..+.-. .+... .+++.. ||++|+.-. ....|...
T Consensus 79 sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri 158 (638)
T 3sbq_A 79 QGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKANSRVARI 158 (638)
T ss_dssp GCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred CceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCCcceEEE
Confidence 789999998888766544210 11111 233322 567777755 45677777
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEe--cCCCEEEEEeCCcE-----------------------------EEEEccCCC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWS--PDNQRMISIVENGA-----------------------------KVSSLPIDY 134 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~~~-----------------------------~i~~~~~~~ 134 (248)
+++.-+.-....++ ....+..+.|. |+..+++..++..+ ..|.+..+.
T Consensus 159 ~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~v~g 237 (638)
T 3sbq_A 159 RLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQVIVDG 237 (638)
T ss_dssp ETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEEEEESS
T ss_pred ECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEEEEcCC
Confidence 87776643333333 34567777775 56677777663221 123333333
Q ss_pred CCceeEeCCCCCEEEEEcCCC----------------------------------------eEEEEECCc-------eee
Q psy16005 135 EPSSISLDHEHGLVAVGGADS----------------------------------------KISIVENGA-------KVS 167 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------~i~~~~~~~-------~~~ 167 (248)
........+++.+.++.+.+. .+.+.|..+ ...
T Consensus 238 nld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~ 317 (638)
T 3sbq_A 238 NLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTR 317 (638)
T ss_dssp CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEE
T ss_pred ChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCceEE
Confidence 333444455565555443211 233344211 233
Q ss_pred eecccCCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCC------CCC-----CcccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGGA-DSKVHIYELNNK------SLS-----PKAELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~------~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.++....+..+..+|||+++++++. +.++.++|.+.- +.. ......-.-.....+|.++|....+.--
T Consensus 318 ~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 318 YVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp EEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred EEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeee
Confidence 3455666788999999998888764 788999999742 110 0011122345678899999955555567
Q ss_pred CCeEEEEECC
Q psy16005 236 HRKVVLYRVP 245 (248)
Q Consensus 236 d~~i~vw~~~ 245 (248)
|..|.-|++.
T Consensus 398 dSqvvkWni~ 407 (638)
T 3sbq_A 398 DSQVVKWNME 407 (638)
T ss_dssp TTEEEEEEHH
T ss_pred cceEEEEecc
Confidence 9999999975
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.16 Score=38.42 Aligned_cols=139 Identities=11% Similarity=0.203 Sum_probs=84.1
Q ss_pred CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecC----CCE--EEEEeCCcEEEEEccCCCCCceeEeCC
Q psy16005 70 GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD----NQR--MISIVENGAKVSSLPIDYEPSSISLDH 143 (248)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~~~~~~i~~~~~~~~~~~~~~~~ 143 (248)
..+++.....+-+.+||+ +++.+ ..+.. +.++.+..-|+ |+. ++
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l--~~~~~--g~~nnVD~r~~~~l~g~~~dla------------------------- 89 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKML--HSYNT--GKLNNVDIRYDFPLNGKKVDIA------------------------- 89 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEE--EEECC--SCEEEEEEEEEEEETTEEEEEE-------------------------
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEE--EEccC--CCcccEEEecccccCCceEeEE-------------------------
Confidence 355666667789999999 66654 23332 55666666652 111 11
Q ss_pred CCCEEEEEcC--CCeEEEEEC---Cceeeee-----c--cc-CCCceEEE--cCC-CC-EEEEEcCCCcEEEEEcCC---
Q psy16005 144 EHGLVAVGGA--DSKISIVEN---GAKVSSL-----P--ID-YEPSSISL--DHE-HG-LVAVGGADSKVHIYELNN--- 203 (248)
Q Consensus 144 ~~~~~~~~~~--~~~i~~~~~---~~~~~~~-----~--~~-~~~~~~~~--s~~-~~-~l~~~~~d~~v~i~d~~~--- 203 (248)
+++... +++|.+|+. ...+..+ + .. ..+..+++ +|. ++ ++++...+|.+..|++..
T Consensus 90 ----~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 90 ----AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN 165 (355)
T ss_dssp ----EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred ----EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC
Confidence 222223 456666641 1223333 1 11 44566777 774 44 688888899999999832
Q ss_pred C----CCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 204 K----SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 204 ~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+ +.+..+. ..+.+..+...+....|+.+-++.-|..++.
T Consensus 166 g~~~~~lVR~f~--lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 166 GYISGKKVRAFK--MNSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp SCEEEEEEEEEE--CSSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred CcccceEEEEec--CCCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 2 2333333 3457889999998899999988866655554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.15 Score=37.88 Aligned_cols=206 Identities=8% Similarity=0.049 Sum_probs=99.5
Q ss_pred CcEEEEEecCCCceee-eeecCCcceEEEEECcCCcEEEEEcc----C-------CeEEEEECCCCceeeeeeccCCCCC
Q psy16005 37 GNSVIIRNIENPAISD-IYTEHSCAVNVAKYSPSGFYIASGDI----S-------GKVRIWDTVNKEHILKNEFHPIGGP 104 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~~~~~~~~~~ 104 (248)
+..+.+||..+.+-.. .+..............+++.++.|+. + ..+..||..+++......++.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 3688999988876432 11111122233333457778888773 1 1277889888764322222211111
Q ss_pred eeEEEEecCCCEEEEEeCC---------cEEEEEccCCC----------CCceeEeCCCCCEEEEEcC-C-----CeEEE
Q psy16005 105 IKDIAWSPDNQRMISIVEN---------GAKVSSLPIDY----------EPSSISLDHEHGLVAVGGA-D-----SKISI 159 (248)
Q Consensus 105 v~~~~~~~~~~~l~~~~~~---------~~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~-----~~i~~ 159 (248)
.+++.. +++.++.++.+ .+.+++..... .....+...++++++.|+. + ..+..
T Consensus 92 -~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 169 (315)
T 4asc_A 92 -FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCV 169 (315)
T ss_dssp -CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEE
T ss_pred -eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEE
Confidence 122222 56666666521 13445543211 0111122245567777765 2 35778
Q ss_pred EECCceeeee-c-ccCC--CceEEEcCCCCEEEEEcCCC-----cEEEEEcCCCCCCCcccccC-CcCeEEEEEcCCCcE
Q psy16005 160 VENGAKVSSL-P-IDYE--PSSISLDHEHGLVAVGGADS-----KVHIYELNNKSLSPKAELDH-LGPVTDCSFSPSNEY 229 (248)
Q Consensus 160 ~~~~~~~~~~-~-~~~~--~~~~~~s~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~ 229 (248)
||........ . .+.+ -.+++ .-++++++.|+.++ .+.+||+.+.+-........ ......+.+ +++.
T Consensus 170 yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l 246 (315)
T 4asc_A 170 YDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTL 246 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred EeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEE
Confidence 8844332221 1 1111 12222 23667777777544 58899998764321111111 111122223 5677
Q ss_pred EEEEcCC--------------CeEEEEECCCC
Q psy16005 230 LVASDAH--------------RKVVLYRVPDF 247 (248)
Q Consensus 230 l~~~~~d--------------~~i~vw~~~~~ 247 (248)
++.|+.+ ..+.+||+++.
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EEECCccccCcCCccccccccCcEEEecCCCC
Confidence 7777653 24678887664
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.44 Score=40.26 Aligned_cols=217 Identities=11% Similarity=0.107 Sum_probs=121.4
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeee-ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
...|.++.-..+|...+...+| +..||-...+..... ......|.++.-..++. |..|+.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~- 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQ- 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECC-
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEEC-
Confidence 4579999999998766655555 556663221111100 11235688887776664 55555555 7889987764321
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC--------------CCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID--------------YEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
........|.++.. .++ .|..+..+++..++.... ..+.++....++.+.+ ++.+ -+..++
T Consensus 97 -~~~~~~~~i~~i~~-~~g-~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~ 171 (758)
T 3ott_A 97 -PETDFPTDVRTMAL-QGD-TLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYI 171 (758)
T ss_dssp -CSCCCCSCEEEEEE-ETT-EEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEE
T ss_pred -cccCCCceEEEEEe-cCC-cEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCc
Confidence 11112335666654 355 455566667766664321 1234555566776665 3443 467777
Q ss_pred C-Cceeeeeccc-------CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 162 N-GAKVSSLPID-------YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 162 ~-~~~~~~~~~~-------~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
. ......+... ..+.++...+++..|.+|+. +-+..+|..+++...... .....|.++...++|.+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWigT 249 (758)
T 3ott_A 172 PSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLAGT 249 (758)
T ss_dssp TTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEEEE
T ss_pred cCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEEEe
Confidence 3 2333333221 12566777777665555654 458889987665321111 123458888888888766544
Q ss_pred cCCCeEEEEECCC
Q psy16005 234 DAHRKVVLYRVPD 246 (248)
Q Consensus 234 ~~d~~i~vw~~~~ 246 (248)
.+ -+.+++..+
T Consensus 250 -~~-Gl~~~~~~~ 260 (758)
T 3ott_A 250 -DN-GLYVYHNDT 260 (758)
T ss_dssp -TT-EEEEECCTT
T ss_pred -CC-ceeEEecCC
Confidence 33 466776544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.29 Score=36.13 Aligned_cols=173 Identities=9% Similarity=0.020 Sum_probs=87.1
Q ss_pred CCCEEEEeC-C----cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC------CeEEEEECCCCceee
Q psy16005 28 KGKNFLYTN-G----NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS------GKVRIWDTVNKEHIL 94 (248)
Q Consensus 28 ~~~~l~~~~-~----~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~ 94 (248)
++..++.|+ + ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||..+.+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 566666665 2 5788999887654322 1111111222222 67777887765 458899998876433
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEe----------CCcEEEEEccCCCC----------CceeEeCCCCCEEEEEcCC
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIV----------ENGAKVSSLPIDYE----------PSSISLDHEHGLVAVGGAD 154 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 154 (248)
...++...... +++. -+++.++.++ .+.+.++++..... .......-++++++.|+.+
T Consensus 133 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp ECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CCCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 22232212222 2222 2566666664 22245555432210 0111112255677776643
Q ss_pred -----CeEEEEECCceeeee----cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCC
Q psy16005 155 -----SKISIVENGAKVSSL----PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKS 205 (248)
Q Consensus 155 -----~~i~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~ 205 (248)
..+..||........ +....-..++.. ++++++.|+.+ ..+.+||+.+.+
T Consensus 211 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 356778843322221 111111222222 66788888754 468899988765
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.7 Score=38.83 Aligned_cols=223 Identities=10% Similarity=0.024 Sum_probs=111.2
Q ss_pred EEE-eCCCCCEEEEe-C----C-cEEEEEecCCCceeee-ee-cCCc------ceEEEEECcCCcEEEEE----------
Q psy16005 22 VLG-GDPKGKNFLYT-N----G-NSVIIRNIENPAISDI-YT-EHSC------AVNVAKYSPSGFYIASG---------- 76 (248)
Q Consensus 22 ~~~-~s~~~~~l~~~-~----~-~~v~v~~~~~~~~~~~-~~-~~~~------~v~~~~~s~~~~~l~~~---------- 76 (248)
.+. ++|++++++.+ + | ..++++|+.+++.+.. +. .-+. ....++|..+...+++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 444 89999998876 2 2 3899999999887642 22 0001 11344776444444432
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCe-eEEEEecCCCE-----EEEEeCC--cEEEEEccCC---CCCcee------
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPI-KDIAWSPDNQR-----MISIVEN--GAKVSSLPID---YEPSSI------ 139 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~-----l~~~~~~--~~~i~~~~~~---~~~~~~------ 139 (248)
+....|+.|.+.+....-...+.+....+ .....++++++ +++.+.+ ...+|-++.. .....+
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA 292 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc
Confidence 12246899988765432223333322332 33445666663 3333322 2344544322 111111
Q ss_pred --EeCCCCCEEEEE----------cCCCeEEEEECCc---------eeee-ecc--cCCCceEEEcCCCCEEEEEcCCC-
Q psy16005 140 --SLDHEHGLVAVG----------GADSKISIVENGA---------KVSS-LPI--DYEPSSISLDHEHGLVAVGGADS- 194 (248)
Q Consensus 140 --~~~~~~~~~~~~----------~~~~~i~~~~~~~---------~~~~-~~~--~~~~~~~~~s~~~~~l~~~~~d~- 194 (248)
....++.+++.. ...+.|...+... .... +.. ...+..+.+..+ .++++...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 223344444422 1345566666211 1111 222 223456777765 4666666665
Q ss_pred -cEEEEEcCCCC-CCCc-ccccCCcCeEEEEEcCCCcEEE-EEcC---CCeEEEEECC
Q psy16005 195 -KVHIYELNNKS-LSPK-AELDHLGPVTDCSFSPSNEYLV-ASDA---HRKVVLYRVP 245 (248)
Q Consensus 195 -~v~i~d~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~-~~~~---d~~i~vw~~~ 245 (248)
.+.++|+.+++ .... ...+..+.+.....++++..++ +.++ -+.+..+|+.
T Consensus 372 ~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 372 AKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 47778876664 2222 2222235677777777775443 3332 3567777654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.45 Score=34.92 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=87.0
Q ss_pred CCCEEEEeC-C-----cEEEEEecCCCc---eeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCCc
Q psy16005 28 KGKNFLYTN-G-----NSVIIRNIENPA---ISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNKE 91 (248)
Q Consensus 28 ~~~~l~~~~-~-----~~v~v~~~~~~~---~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 91 (248)
++..++.|+ + +.+.+||..+.+ -... +........++.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 566666664 2 468899988765 2221 1111111222222 67777777654 368899998876
Q ss_pred eeeeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC---------C-CceeEeCCCCCEEEEEcCC-
Q psy16005 92 HILKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY---------E-PSSISLDHEHGLVAVGGAD- 154 (248)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~- 154 (248)
......++........+. -+++.++.++.+ .+.++++.... . ........++++++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence 543333332222222222 266666666533 24555543211 0 0111122256677777654
Q ss_pred ----CeEEEEECCceee-eec-ccCC-CceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCC
Q psy16005 155 ----SKISIVENGAKVS-SLP-IDYE-PSSISLDHEHGLVAVGGAD-----SKVHIYELNNKS 205 (248)
Q Consensus 155 ----~~i~~~~~~~~~~-~~~-~~~~-~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~ 205 (248)
..+..||...... .+. .... ....+..-++++++.|+.+ ..+.+||+++.+
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 4578888433222 221 1111 1111222366777777755 357888887654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.95 Score=37.93 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=37.1
Q ss_pred CCCCEEEEeC-C----cEEEEEecCCCceeeee-e-------cCCcceEEEEECcCCcEEEEEccCC------eEEEEEC
Q psy16005 27 PKGKNFLYTN-G----NSVIIRNIENPAISDIY-T-------EHSCAVNVAKYSPSGFYIASGDISG------KVRIWDT 87 (248)
Q Consensus 27 ~~~~~l~~~~-~----~~v~v~~~~~~~~~~~~-~-------~~~~~v~~~~~s~~~~~l~~~~~dg------~i~iwd~ 87 (248)
.++..++.|+ + +.+.+||..+++-...- . .....-.++.+..+++.++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 4566666665 2 46888898776543322 1 1111122333322677778877542 4778888
Q ss_pred CCCce
Q psy16005 88 VNKEH 92 (248)
Q Consensus 88 ~~~~~ 92 (248)
.+.+.
T Consensus 476 ~t~~W 480 (695)
T 2zwa_A 476 KTREW 480 (695)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 77654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.54 Score=34.56 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=86.4
Q ss_pred CCCEEEEeC-C-----cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccCC-----eEEEEECCCCceee
Q psy16005 28 KGKNFLYTN-G-----NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDISG-----KVRIWDTVNKEHIL 94 (248)
Q Consensus 28 ~~~~l~~~~-~-----~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 94 (248)
++..++.|+ + ..+.+||..+.+-... +........++.+ +++.++.|+.++ .+.+||+.+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 566666664 2 3688899877653321 1111111222222 667777777553 57889988776443
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeC--------CcEEEEEccCCC---------C-CceeEeCCCCCEEEEEcCC--
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVE--------NGAKVSSLPIDY---------E-PSSISLDHEHGLVAVGGAD-- 154 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------~~~~i~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~-- 154 (248)
...++...... +++. -+++.++.++. +.+.++++.... . ........++++++.|+.+
T Consensus 139 ~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 139 VAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP 216 (302)
T ss_dssp ECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS
T ss_pred cCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCC
Confidence 32332222222 2222 25666666542 224455543211 0 0011112256677777654
Q ss_pred ---CeEEEEECCceee-eec-ccCC-CceEEEcCCCCEEEEEcCCC-----cEEEEEcCCCC
Q psy16005 155 ---SKISIVENGAKVS-SLP-IDYE-PSSISLDHEHGLVAVGGADS-----KVHIYELNNKS 205 (248)
Q Consensus 155 ---~~i~~~~~~~~~~-~~~-~~~~-~~~~~~s~~~~~l~~~~~d~-----~v~i~d~~~~~ 205 (248)
..+..||...... .+. .... ....+...++++++.|+.++ .+.+||+.+.+
T Consensus 217 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 3577888433222 121 1111 11112223667777877553 48999998765
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.30 E-value=1.1 Score=37.76 Aligned_cols=221 Identities=14% Similarity=0.002 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCce--eeeee-------cCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAI--SDIYT-------EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~--~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
..|.++.-.++|.+.+...+ -+..++..+++. ...+. .....|.++.-.+++++-+ |+ ++-+..+|..
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~ 400 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYA 400 (758)
T ss_dssp CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETT
T ss_pred ceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcC
Confidence 35778888888887766544 466666554321 11111 1124588888887777444 44 4568889988
Q ss_pred CCceeeeeeccC----CCCCeeEEEEecCCCEEEEEeCCcEEEEEccC----------------------CCCCceeEeC
Q psy16005 89 NKEHILKNEFHP----IGGPIKDIAWSPDNQRMISIVENGAKVSSLPI----------------------DYEPSSISLD 142 (248)
Q Consensus 89 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~----------------------~~~~~~~~~~ 142 (248)
+++......... ....|.++...++++..+....+|+.+++... ...+.++..+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 480 (758)
T 3ott_A 401 TRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPD 480 (758)
T ss_dssp TTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEEC
T ss_pred CCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEc
Confidence 765422111011 12457888887777665554456777666331 0124556677
Q ss_pred CCCCEEEEEcCCCeEEEEECC-ceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccccc-CC
Q psy16005 143 HEHGLVAVGGADSKISIVENG-AKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HL 215 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~ 215 (248)
+++++.+.++..+-+..+|.. .....+.. ...+.++..+.+|.+.+. +..| +..||..+++.......+ ..
T Consensus 481 ~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~gl~~ 558 (758)
T 3ott_A 481 NEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFGSFSN 558 (758)
T ss_dssp TTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCCC---
T ss_pred CCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEecccCCCc
Confidence 788877644444557778832 23333321 234567777888875544 4445 888888766543211111 23
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
..|.++... +|...++ +..| |..+|..+
T Consensus 559 ~~i~~i~~~-~g~lWi~-t~~G-l~~~~~~~ 586 (758)
T 3ott_A 559 NEILSMTCV-KNSIWVS-TTNG-LWIIDRKT 586 (758)
T ss_dssp CCEEEEEEE-TTEEEEE-ESSC-EEEEETTT
T ss_pred cceEEEEEC-CCCEEEE-CCCC-eEEEcCCC
Confidence 457777764 6654444 4444 55666554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.62 Score=34.42 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=85.8
Q ss_pred CCCEEEEeCC----------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC-----CeEEEEECCCC
Q psy16005 28 KGKNFLYTNG----------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS-----GKVRIWDTVNK 90 (248)
Q Consensus 28 ~~~~l~~~~~----------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 90 (248)
++.+++.|+. +.+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666666542 3688888877653321 1111111222223 67777777644 36889999887
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC------cEEEEEccCCC-----------CCceeEeCCCCCEEEEEcC
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN------GAKVSSLPIDY-----------EPSSISLDHEHGLVAVGGA 153 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 153 (248)
+......++........+.+ +++.++.++.+ .+.++++.... ....+.. -++++++.|+.
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~ 224 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGY 224 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCC
Confidence 64432233222222222222 56666666533 24555543211 1111111 25667777765
Q ss_pred C-----CeEEEEECCceeeee-c-ccCC--CceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCC
Q psy16005 154 D-----SKISIVENGAKVSSL-P-IDYE--PSSISLDHEHGLVAVGGAD-----SKVHIYELNNKS 205 (248)
Q Consensus 154 ~-----~~i~~~~~~~~~~~~-~-~~~~--~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~ 205 (248)
+ ..+..||........ . .... -.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 225 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 4 457888843332221 1 1111 122222 256777777754 357888887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.63 Score=34.48 Aligned_cols=178 Identities=10% Similarity=0.022 Sum_probs=85.7
Q ss_pred EeCCCCCEEEEeC-----C-------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccC--------Ce
Q psy16005 24 GGDPKGKNFLYTN-----G-------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDIS--------GK 81 (248)
Q Consensus 24 ~~s~~~~~l~~~~-----~-------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~ 81 (248)
....++..++.|+ + ..+.+||..+.+-... +.........+.+ +++.++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 3345677766654 1 1377888877653221 1111111112222 66777777742 35
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-------CcEEEEEccCCC---------C-CceeEeCCC
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-------NGAKVSSLPIDY---------E-PSSISLDHE 144 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------~~~~i~~~~~~~---------~-~~~~~~~~~ 144 (248)
+.+||..+.+......++...... +++ ..+++.++.++. +.+.+++..... . ....+..-+
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGH-TVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred EEEECCCCCcEeECCCCCCcccce-eEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence 889999887643322332222221 222 235666666664 124555543211 0 011112225
Q ss_pred CCEEEEEcCCC-----eEEEEECCceeee-ec-ccCC--CceEEEcCCCCEEEEEcCC--------------CcEEEEEc
Q psy16005 145 HGLVAVGGADS-----KISIVENGAKVSS-LP-IDYE--PSSISLDHEHGLVAVGGAD--------------SKVHIYEL 201 (248)
Q Consensus 145 ~~~~~~~~~~~-----~i~~~~~~~~~~~-~~-~~~~--~~~~~~s~~~~~l~~~~~d--------------~~v~i~d~ 201 (248)
+++++.|+.++ .+..||....... +. ...+ -.+++ .-++++++.|+.+ ..+.+||+
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~ 275 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNE 275 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecC
Confidence 66777776544 4667774332222 11 1111 12222 2356777777653 24778888
Q ss_pred CCCCC
Q psy16005 202 NNKSL 206 (248)
Q Consensus 202 ~~~~~ 206 (248)
.+.+-
T Consensus 276 ~~~~W 280 (315)
T 4asc_A 276 EEKKW 280 (315)
T ss_dssp TTTEE
T ss_pred CCChh
Confidence 77643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.83 Score=34.48 Aligned_cols=32 Identities=13% Similarity=0.340 Sum_probs=19.8
Q ss_pred EcCCCCEEEEEcCCC------cEEEEEcCCCCCCCccc
Q psy16005 180 LDHEHGLVAVGGADS------KVHIYELNNKSLSPKAE 211 (248)
Q Consensus 180 ~s~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~ 211 (248)
...++++++.|+.++ .|.++++++++......
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 334677888887543 46777888887654433
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=2 Score=36.03 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=53.7
Q ss_pred EEEeCCCCCEEEEeC-C------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEccCC--eEEEEECCCC
Q psy16005 22 VLGGDPKGKNFLYTN-G------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNK 90 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-~------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~ 90 (248)
++.+..+++.++.|+ + +.+.+||..+.+-... +...... .+++...++++++.|+.++ .+.+||..+.
T Consensus 445 ~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred EEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 344433677777764 1 3678899887543321 1111111 1223323778888887654 6899999887
Q ss_pred ceeeeee---ccCCCCCeeEEEEecC-CCEEEEEeC
Q psy16005 91 EHILKNE---FHPIGGPIKDIAWSPD-NQRMISIVE 122 (248)
Q Consensus 91 ~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~ 122 (248)
....... .+.......++.+..+ ++.++.++.
T Consensus 524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~ 559 (695)
T 2zwa_A 524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGG 559 (695)
T ss_dssp EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCB
T ss_pred ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCc
Confidence 6432221 2222223334555655 556666653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.30 E-value=1.2 Score=33.08 Aligned_cols=207 Identities=11% Similarity=0.081 Sum_probs=98.2
Q ss_pred CCcEEEEEecCCCceeee-eecCCcceEEEEECcCCcEEEEEcc----CC-------eEEEEECCCCceeeeeeccCCCC
Q psy16005 36 NGNSVIIRNIENPAISDI-YTEHSCAVNVAKYSPSGFYIASGDI----SG-------KVRIWDTVNKEHILKNEFHPIGG 103 (248)
Q Consensus 36 ~~~~v~v~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~ 103 (248)
++..+..||..+.+-... ...............+++.++.|+. ++ .+..||..+.+......++....
T Consensus 22 GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 101 (318)
T 2woz_A 22 NDTAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101 (318)
T ss_dssp CSSEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred cccceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence 334588999887764431 1111112222333457788888873 12 27788988776433222222111
Q ss_pred CeeEEEEecCCCEEEEEeCC---c-----EEEEEccCCCC------C----ceeEeCCCCCEEEEEcC------CCeEEE
Q psy16005 104 PIKDIAWSPDNQRMISIVEN---G-----AKVSSLPIDYE------P----SSISLDHEHGLVAVGGA------DSKISI 159 (248)
Q Consensus 104 ~v~~~~~~~~~~~l~~~~~~---~-----~~i~~~~~~~~------~----~~~~~~~~~~~~~~~~~------~~~i~~ 159 (248)
. .+++.. +++.++.++.+ . +.+++...... + ...+...++++++.|+. ...+..
T Consensus 102 ~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 102 L-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp S-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEE
T ss_pred c-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEE
Confidence 1 222222 56666666632 1 23334322110 0 01111245666677654 235778
Q ss_pred EECCceeee-e---cccCCCceEEEcCCCCEEEEEcCC-----CcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCcE
Q psy16005 160 VENGAKVSS-L---PIDYEPSSISLDHEHGLVAVGGAD-----SKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEY 229 (248)
Q Consensus 160 ~~~~~~~~~-~---~~~~~~~~~~~s~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 229 (248)
||....... + +....-.+++. -++++++.|+.+ ..+.+||+.+.+-....... .......+. -+++.
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 256 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSL 256 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEE
T ss_pred EcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEE
Confidence 884332222 1 11111122222 356777777643 35788998876532111111 111112222 25677
Q ss_pred EEEEcCC--------------CeEEEEECCCC
Q psy16005 230 LVASDAH--------------RKVVLYRVPDF 247 (248)
Q Consensus 230 l~~~~~d--------------~~i~vw~~~~~ 247 (248)
++.|+.+ ..+.+||+.+.
T Consensus 257 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 257 YAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 7776643 45788888764
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=1.7 Score=33.45 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=95.6
Q ss_pred cCCcEEEEeCCCCCEEEE--eC-C-------------cEEEEEecCCC--ceeeeeecC------CcceEEEEEC---cC
Q psy16005 17 RGQPIVLGGDPKGKNFLY--TN-G-------------NSVIIRNIENP--AISDIYTEH------SCAVNVAKYS---PS 69 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~--~~-~-------------~~v~v~~~~~~--~~~~~~~~~------~~~v~~~~~s---~~ 69 (248)
--.|..+...+++++-+. |. + -.|.+||+.+. +.++.+.-. ...+..+++. |+
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346778888888876654 21 1 26889999999 888766522 3457788877 22
Q ss_pred ----CcEEEEE-ccCCeEEEEECCCCceeeeee--ccCC--------------CCCeeEEEEecC----CCEEEEEeCCc
Q psy16005 70 ----GFYIASG-DISGKVRIWDTVNKEHILKNE--FHPI--------------GGPIKDIAWSPD----NQRMISIVENG 124 (248)
Q Consensus 70 ----~~~l~~~-~~dg~i~iwd~~~~~~~~~~~--~~~~--------------~~~v~~~~~~~~----~~~l~~~~~~~ 124 (248)
+.+++.+ +..+-|.|+|+.+++...... +... ...+..|+++|+ ++.|+...-.+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 3444444 346789999999876432111 0010 247889999998 78888887777
Q ss_pred EEEEEccC-----------------CC---CCceeEeC-CCCCEEEEEcCCCeEEEEECCc
Q psy16005 125 AKVSSLPI-----------------DY---EPSSISLD-HEHGLVAVGGADSKISIVENGA 164 (248)
Q Consensus 125 ~~i~~~~~-----------------~~---~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 164 (248)
.+++.++. .. ....++++ .+|.++++--....|..|+...
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 66666531 01 11134554 5677777777888899999554
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.27 E-value=1.8 Score=31.97 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCCEEEEeC-C-------cEEEEEecCCCceeee--eecCCcceEEEEECcCCcEEEEEcc------CCeEEEEECCCCc
Q psy16005 28 KGKNFLYTN-G-------NSVIIRNIENPAISDI--YTEHSCAVNVAKYSPSGFYIASGDI------SGKVRIWDTVNKE 91 (248)
Q Consensus 28 ~~~~l~~~~-~-------~~v~v~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~ 91 (248)
+++.++.|+ + ..+.+||..+.+-... +........++. .++++++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 566666654 2 3688888877653321 111001111222 36777777764 2358899998876
Q ss_pred ee
Q psy16005 92 HI 93 (248)
Q Consensus 92 ~~ 93 (248)
..
T Consensus 187 W~ 188 (318)
T 2woz_A 187 WK 188 (318)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=92.81 E-value=3.3 Score=33.70 Aligned_cols=173 Identities=14% Similarity=0.157 Sum_probs=106.2
Q ss_pred CCCEEEEeC--CcEEEEEecCCCceeeeee-cCCcceEEEEEC--cCCcEEEEEcc-------CCeE---------EE--
Q psy16005 28 KGKNFLYTN--GNSVIIRNIENPAISDIYT-EHSCAVNVAKYS--PSGFYIASGDI-------SGKV---------RI-- 84 (248)
Q Consensus 28 ~~~~l~~~~--~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~~~~-------dg~i---------~i-- 84 (248)
||++|+.-. ...|...+++..+.-+.+. .....+.+++|- |+-.+++.+++ ||.. .+
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 788888875 6688888888887766554 334567888886 67777776653 2221 11
Q ss_pred -EECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----------------EEEEE------------------
Q psy16005 85 -WDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----------------AKVSS------------------ 129 (248)
Q Consensus 85 -wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----------------~~i~~------------------ 129 (248)
.|..+.+........ +..-.....+++++.++.+.+. +.+++
T Consensus 221 ~iD~~tm~v~~Qv~v~---gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 221 AIDAETMEMAFQVIVD---GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEETTTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEcCCccEEEEEEEcC---CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 122222221111111 2333455567777777765321 12222
Q ss_pred -------cc--------------CCCCCceeEeCCCCCEEEEEc-CCCeEEEEECCce---------------eeeeccc
Q psy16005 130 -------LP--------------IDYEPSSISLDHEHGLVAVGG-ADSKISIVENGAK---------------VSSLPID 172 (248)
Q Consensus 130 -------~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---------------~~~~~~~ 172 (248)
.+ .+..+..+..+|+|+++++++ -+.++.+++..+. ....+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 22 123456778899999887765 5778999883321 2334456
Q ss_pred CCCceEEEcCCCCEEEEEcCCCcEEEEEcCC
Q psy16005 173 YEPSSISLDHEHGLVAVGGADSKVHIYELNN 203 (248)
Q Consensus 173 ~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~ 203 (248)
..+...+|+++|.-..+---|.+|..|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 6678899999995555556799999999965
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.81 E-value=4.5 Score=31.02 Aligned_cols=67 Identities=10% Similarity=-0.111 Sum_probs=36.4
Q ss_pred CCcEEEEeCC--CCCEEEEeCCc----EEEEEecCCCceeeeee------c--------CCcceEEEEECc-C-CcEEEE
Q psy16005 18 GQPIVLGGDP--KGKNFLYTNGN----SVIIRNIENPAISDIYT------E--------HSCAVNVAKYSP-S-GFYIAS 75 (248)
Q Consensus 18 ~~v~~~~~s~--~~~~l~~~~~~----~v~v~~~~~~~~~~~~~------~--------~~~~v~~~~~s~-~-~~~l~~ 75 (248)
..|.++++.| ++..++.+..+ .|...+ +.++.-..+. . ....|.++++.| + ...|+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4689999998 55555555444 454432 3333211111 0 112578899987 2 455666
Q ss_pred EccCCeEEEE
Q psy16005 76 GDISGKVRIW 85 (248)
Q Consensus 76 ~~~dg~i~iw 85 (248)
+...+.|...
T Consensus 134 g~~~ggl~~S 143 (394)
T 3b7f_A 134 GTSPQGLFRS 143 (394)
T ss_dssp EEETTEEEEE
T ss_pred EecCCcEEEE
Confidence 6555655444
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.73 Score=37.69 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=41.6
Q ss_pred CceEEEcCCCCEEEEEcCC------------CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 175 PSSISLDHEHGLVAVGGAD------------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 175 ~~~~~~s~~~~~l~~~~~d------------~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
+-.|+|+|.|.++++-..+ +.+.+.+..+++....+..+....++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999966664322 3466667677766444443456789999999999988776
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=0.85 Score=37.02 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCceEEEcCCCCEEEEEcC------------CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 174 EPSSISLDHEHGLVAVGGA------------DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 174 ~~~~~~~s~~~~~l~~~~~------------d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.+..+.|+++|.+.++... .+.|..++..+++............++.++|+||++.|+.+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3567999999987664321 22577777777765433321234568999999999988776
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=2.6 Score=34.31 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=45.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCC-------------cEEEEEecCCCceeeeeecC-CcceEEEEECcCCcEEEEEc
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASGD 77 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~-------------~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~ 77 (248)
...+..|.|.++|.+.++... +.++.++..+++..+.+... ...++.++|+||++.|+++-
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356778999999988875431 26777777778877666543 35789999999999888763
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=89.22 E-value=2.5 Score=34.59 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=43.4
Q ss_pred CcEEEEeCCCCCEEEEeCC-------------cEEEEEecCCCceeeeeecC-CcceEEEEECcCCcEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTNG-------------NSVIIRNIENPAISDIYTEH-SCAVNVAKYSPSGFYIASG 76 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~-------------~~v~v~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~ 76 (248)
.+--|.|+|+|+++++... +.+.+.+..+++..+.+... ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4567999999997776531 24666677778877777655 4579999999999888765
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.08 E-value=5.2 Score=29.22 Aligned_cols=208 Identities=12% Similarity=0.054 Sum_probs=100.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee-ee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI-LK 95 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 95 (248)
...|..++....- .++.. ++.++.|-.........-......|..++...+. .++. . ||.|..|-......+ ..
T Consensus 23 ~~~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 23 QSGVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSSCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred cCCCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 3456777765443 23334 8899999654322211111123356777665443 3333 4 899999976543221 10
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------CCCceeEeCCCCCEEEEEcCCCeEEEEECC--
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------YEPSSISLDHEHGLVAVGGADSKISIVENG-- 163 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 163 (248)
..+ ...|..++...+. .++.. ++.+..|-.... ..+..++..... .++. . ++.++.|-.+
T Consensus 98 ~~~---~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~l-~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 98 AEA---RSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALAV-K-NGGVIAWGDNYF 169 (282)
T ss_dssp GGG---SSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred ccc---CCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEEE-E-CCEEEEecCCCC
Confidence 111 2356666655433 23333 555566654321 122333332222 2222 3 6889988732
Q ss_pred -ceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 164 -AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 164 -~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
+.-........+..++...+. .++. .||.|+.|=........... .....|..++-..+.. ++.. ||.++.|
T Consensus 170 gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al~--~g~v~~w 242 (282)
T 3qhy_B 170 GQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWYS-LALK--NGKVIAW 242 (282)
T ss_dssp STTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSCE-EEEE--TTEEEEE
T ss_pred CCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCEE-EEEE--CCEEEEe
Confidence 221111123344555544332 2333 58999999765433222111 1223567776554333 3332 8888887
Q ss_pred EC
Q psy16005 243 RV 244 (248)
Q Consensus 243 ~~ 244 (248)
=.
T Consensus 243 G~ 244 (282)
T 3qhy_B 243 GS 244 (282)
T ss_dssp ST
T ss_pred cC
Confidence 43
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=88.50 E-value=6 Score=34.61 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=32.1
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.+.+++..++..++++-+.|+++|+|++.+++.+....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467777888888999999999999999999987654433
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=88.34 E-value=8.2 Score=30.58 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=34.0
Q ss_pred cceEEEEECcCCc-EEEEEccCCeEEEEECCCCc---eeeee--ecc-----CCCCCeeEEEEecC
Q psy16005 59 CAVNVAKYSPSGF-YIASGDISGKVRIWDTVNKE---HILKN--EFH-----PIGGPIKDIAWSPD 113 (248)
Q Consensus 59 ~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~--~~~-----~~~~~v~~~~~~~~ 113 (248)
.....|+|.|++. .|+++...|.|++++..... .+... .+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999985 45555678999999754321 11100 011 11356788999996
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.72 E-value=8.5 Score=28.05 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=91.1
Q ss_pred eCCCCCEEEEeCCcEEEE---EecCCCceeeeeecCCcceEEEEECc--CCcEEEEEccCCeEEEEECCCCc----eeee
Q psy16005 25 GDPKGKNFLYTNGNSVII---RNIENPAISDIYTEHSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKE----HILK 95 (248)
Q Consensus 25 ~s~~~~~l~~~~~~~v~v---~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~----~~~~ 95 (248)
.+....+++..+.|.++- +++........+ .....|.++.. + +...++..+.+|.++-..+..-. ....
T Consensus 32 ~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~ 109 (276)
T 3no0_A 32 VPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPI 109 (276)
T ss_dssp EETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEEC
T ss_pred ECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEE
Confidence 344455666777776664 343322211113 23456666644 4 46788999999999988764421 0111
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC-----------Cc
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVEN-----------GA 164 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~ 164 (248)
..+.. .+.+..+........++..++.| .+..++. |.
T Consensus 110 i~lke-gD~l~~~~~~~~~~~ill~T~~G-------------------------------~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 110 IKLTE-GDEVVSIASSVDETHILLFTKKG-------------------------------RVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCCCT-TCCEEEEEECCSSCEEEEEETTS-------------------------------EEEEEEGGGSCBCCTTCCCE
T ss_pred EecCC-CCEEEEEEEeCCCCEEEEEECCC-------------------------------EEEEEEhhhCCCcCCCCCCE
Confidence 12222 23344443333333444444444 3332220 00
Q ss_pred eeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc-----cccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 165 KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA-----ELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 165 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
....+.....+..+...+++..++..+..|.++...+..-....+. .....+.+..+....+...++..+.+|.+
T Consensus 158 ~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ 237 (276)
T 3no0_A 158 QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKA 237 (276)
T ss_dssp ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCE
T ss_pred EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeE
Confidence 0111111222333333344567888888999888887543221110 00223445554443344456666677777
Q ss_pred EE--EECC
Q psy16005 240 VL--YRVP 245 (248)
Q Consensus 240 ~v--w~~~ 245 (248)
.. ++.+
T Consensus 238 ir~~~~~~ 245 (276)
T 3no0_A 238 FYDKINQK 245 (276)
T ss_dssp EEEEEEGG
T ss_pred EEeeeCHH
Confidence 66 6653
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.10 E-value=5.7 Score=34.75 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=28.5
Q ss_pred cCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 216 GPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 216 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+.+++..++..++++.+.|+++|+|++.+++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 356778888888999999999999999998863
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.94 E-value=5.9 Score=35.41 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=30.0
Q ss_pred eEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 61 VNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 61 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
+.+++..++..++++-+.|+++|+|++.+++.+....+
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 44555667788999999999999999999987654443
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=81.82 E-value=14 Score=31.08 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=29.0
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (248)
.|.++.+ +..++++-+.|+++|+|++++++.+....+
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555544 467999999999999999999987655555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 248 | ||||
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-28 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.004 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 107 bits (267), Expect = 2e-28
Identities = 54/116 (46%), Positives = 70/116 (60%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAV 61
+S +F +LPRT RG +VLG P G Y NG SV + + ++IYTEHS
Sbjct: 2 EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQT 61
Query: 62 NVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRM 117
VAK SPSG+Y ASGD+ G VRIWDT HILK GP+KDI+W +++R+
Sbjct: 62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.3 bits (87), Expect = 5e-04
Identities = 7/61 (11%), Positives = 19/61 (31%)
Query: 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241
+ +A AD + I+ + + + + + LV+ A+ +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 242 Y 242
Sbjct: 308 V 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.8 bits (83), Expect = 0.002
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 65 KYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124
+SP G IAS ++IW+ + + + Q ++SI NG
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIWTKQALVSISANG 303
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.6 bits (80), Expect = 0.004
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234
+ + S V+ + + + + +H T SPS Y + D
Sbjct: 20 AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGD 77
Query: 235 AHRKV 239
H V
Sbjct: 78 VHGNV 82
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.3 bits (227), Expect = 1e-22
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN-----PAISDIYTE 56
S S K I P TQR L DP Y G S +R +++ P +
Sbjct: 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 57 HSCAVNVAKYSP--SGFYIASGDISGKVRIWDTVNKEHIL------KNEFHPIGGPIKDI 108
S V K+SP Y+ SGD SGKV +W + K+EF + GPI DI
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 109 AWSPDNQRMI 118
+W + +R+
Sbjct: 122 SWDFEGRRLC 131
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.2 bits (152), Expect = 2e-12
Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 17/212 (8%)
Query: 34 YTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93
+ ++ + ++ +T H V + + + G IAS VR+W KE
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGA 153
+ H ++ I+W+P++ G + + G
Sbjct: 179 AELREH--RHVVECISWAPESSYSSISEATG-----------SETKKSGKPGPFLLSGSR 225
Query: 154 DSKISI--VENGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA 210
D I + V G + +L D + + D + +++ NK
Sbjct: 226 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 285
Query: 211 ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLY 242
H VT F + Y+V + V ++
Sbjct: 286 N-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.7 bits (104), Expect = 4e-06
Identities = 21/196 (10%), Positives = 59/196 (30%), Gaps = 13/196 (6%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
H V+ P+G +I S +++W+ + H ++ + + D
Sbjct: 97 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQD 154
Query: 114 NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDY 173
+ S + + E + +H H + + + SS+
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI--------SWAPESSYSSISEAT 206
Query: 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVA 232
+ + G D + ++ + + L H V F +++++
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 264
Query: 233 SDAHRKVVLYRVPDFE 248
+ + ++ +
Sbjct: 265 CADDKTLRVWDYKNKR 280
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (102), Expect = 8e-06
Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 17/204 (8%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP---- 112
H V + P + S +++WD + + H ++DI++
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH--TDSVQDISFDHSGKL 73
Query: 113 ---------DNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENG 163
E + + SI + +H + A K+ V+ G
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 164 AKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCS 222
V + E + ++ G L+A D V ++ + K + +H V S
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECIS 192
Query: 223 FSPSNEYLVASDAHRKVVLYRVPD 246
++P + Y S+A
Sbjct: 193 WAPESSYSSISEATGSETKKSGKP 216
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.4 bits (98), Expect = 2e-05
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
++ + + +N H V + + Y+ +G + V++W+
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.6 bits (140), Expect = 8e-11
Identities = 23/194 (11%), Positives = 50/194 (25%), Gaps = 39/194 (20%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
+T H+ V +P SG ++WD H I I + P+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPN 237
Query: 114 NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDY 173
A G D+ + + A + +
Sbjct: 238 GN-------------------------------AFATGSDDATCRLFDLRADQELMTYSH 266
Query: 174 EP-----SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE 228
+ +S+S L+ G D ++++ + H V+ +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGM 325
Query: 229 YLVASDAHRKVVLY 242
+ + ++
Sbjct: 326 AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.6 bits (140), Expect = 9e-11
Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 11/133 (8%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97
S + ++ +T H +N + P+G A+G R++D + ++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 98 FHPIGGPIKDIAWSPDNQRMISI----------VENGAKVSSLPIDYEP-SSISLDHEHG 146
I I +++S + +++ + L S + + +
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 147 LVAVGGADSKISI 159
VA G DS + I
Sbjct: 326 AVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 21/203 (10%), Positives = 48/203 (23%), Gaps = 20/203 (9%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
H + + + S GK+ IWD+ + + + A++P
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNY 111
Query: 117 MISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA------------ 164
+ + E + G + +
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 165 -----KVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219
+ + S+SL + L G D+ ++++ H +
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDIN 230
Query: 220 DCSFSPSNEYLVASDAHRKVVLY 242
F P+ L+
Sbjct: 231 AICFFPNGNAFATGSDDATCRLF 253
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 6e-06
Identities = 7/52 (13%), Positives = 20/52 (38%)
Query: 35 TNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWD 86
+ + + + + + H V+ + G +A+G ++IW+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.6 bits (83), Expect = 0.002
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 143 HEHGLVAVGGADSKISI--VENGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHI- 198
+ L G D+ + V G + + + ++I A G D+ +
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 199 YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
++ L + + + +T SFS S L+A ++ +
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 1e-09
Identities = 41/285 (14%), Positives = 92/285 (32%), Gaps = 49/285 (17%)
Query: 12 LPRTQRGQ------PIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDI----YTEHSC 59
+P QR P +L D + + I+ N P D+ +H+
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS 63
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIG----------------G 103
V K+S G Y+A+G + +++ + + +
Sbjct: 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 104 PIKDIAWSPDNQRMIS-------------IVENGAKVSSLPIDYEPSSISLDHEHGLVAV 150
I+ + +SPD + + + + + D + +
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 151 GGADSKISIVENGAKVSSLPIDYEPSSISLDHEHG-LVAVGGADSKVHIYELNNKSLSPK 209
G +I + G +L I+ +++++ G +A G D V +++ L +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 210 AELD------HLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ + H V F+ + +V+ R V L+ + +
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 30/219 (13%)
Query: 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNE 97
+V I ++ S + VA G YIA+G + VR+WD+ + + +
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244
Query: 98 FHPIG-----GPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGG 152
+ + ++ D Q ++S + S+ L +
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-------------SVKLWNLQNANNKSD 291
Query: 153 ADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL 212
+ + S +V+ + S++ + G D V ++ KS +P L
Sbjct: 292 SKTPNSGTC---EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK--KSGNPLLML 346
Query: 213 D-HLGPVTDC------SFSPSNEYLVASDAHRKVVLYRV 244
H V S P K +++
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 30/222 (13%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ- 115
+ +SP G ++A+G +RIWD N++ ++ + H D S D
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 116 --------RMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISI--VENGAK 165
R+ + ++ D + + +A G D + + E G
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 166 VSSLPIDYEP--------SSISLDHEHGLVAVGGADSKVHIYELNNKSLS---------- 207
V L + E S+ + V G D V ++ L N +
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 208 -PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248
+ H V + + ++EY+++ R V+ +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 3e-09
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119
++ ++ IA + +V I++ + + +E G + + W+PD+ R+++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.6 bits (124), Expect = 1e-08
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 176 SSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASD 234
S + + + +A+ + +VHIYE + EL H G VT ++P + +V
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 70
Query: 235 AHRKVVLY 242
R ++
Sbjct: 71 TDRNAYVW 78
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 5e-05
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 27 PKGKNFLY-TNGNSVIIRNIENPAISDIYT--EHSCAVNVAKYSPSGFYIASGDISGKVR 83
N + V I ++ EH+ V ++P I +
Sbjct: 17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAY 76
Query: 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG 124
+W + I + + W+P+ ++ +
Sbjct: 77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 117
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 1e-08
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 26 DPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85
P G+ +S + N H V K++ G + S + W
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Query: 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMIS 119
T I +++ + S D++ +++
Sbjct: 293 RTPYGASIFQSKES---SSVLSCDISVDDKYIVT 323
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 3e-07
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 56 EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN---KEHILKNEFHPIGGPIKDIAWSP 112
H V S ++ +G G V++WD + K + + + I+ P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 113 DNQRMI 118
D +I
Sbjct: 108 DGCTLI 113
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 9e-07
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231
+ S+ + G D+ ++ + + + V C S ++Y+V
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT--PYGASIFQSKESSSVLSCDISVDDKYIV 322
Query: 232 ASDAHRKVVLYRV 244
+K +Y V
Sbjct: 323 TGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 4e-04
Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 12/134 (8%)
Query: 80 GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------- 132
G + + + + H I + + P + + +E+
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 133 ---DYEPSSISLDHEHGLVAVGGADSKISI--VENGAKVSSLPIDYEPSSISLDHEHGLV 187
+ S+ + G D+ ++ GA + S + + +
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321
Query: 188 AVGGADSKVHIYEL 201
G D K +YE+
Sbjct: 322 VTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.001
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88
++ S +V S YI +G K +++ +
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.002
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 159 IVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN----KSLSPKAELDH 214
I + ++++L ++++ + V GG V ++++++ +S L+
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR 96
Query: 215 LGPVTDCSFSPSNEYLVASDAHR 237
+ C P L+
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEAS 119
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 4e-07
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDT-VNKEHILKNEFHPIGGPIKDIAWSPDNQ 115
++ K PS + G + ++ + +++ + P+ + +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 116 RMI 118
I
Sbjct: 70 LQI 72
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 8e-06
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 176 SSISLDHEHGLVAVGGADSKVHIYEL--NNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232
S I + L+ + D + +Y+ K++ L + P+ C+F + + +
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 3e-04
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 55 TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114
T + VN ++SP ++ + G + W+ ++ I + + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---NEDSVVKIACSD 304
Query: 115 QRMISIVEN----GAKVSSLPIDYEPSSISL--DHEH 145
+ + I+ SSI + D+E+
Sbjct: 305 NILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYEN 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.002
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 173 YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVA 232
Y +SI H + G+D + + L + + + S+ L
Sbjct: 252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--KKIKNFAKFNEDSVVKIACSDNILCL 309
Query: 233 SDAHRKVVLYRVPD 246
+ + D
Sbjct: 310 ATSDDTFKTNAAID 323
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.5 bits (111), Expect = 6e-07
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 16/90 (17%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116
+V + Y G + +D ++ + + D+ S D +
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVKNNLTDLRLSADRKT 328
Query: 117 MISI----------VENGAKVSSLPIDYEP 136
++ +E ++ D P
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVETDKRP 358
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.2 bits (97), Expect = 3e-05
Identities = 17/191 (8%), Positives = 44/191 (23%), Gaps = 21/191 (10%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
T + + + D V + P I P
Sbjct: 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP-----FVIPLIPG 228
Query: 114 NQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDY 173
+ +V + D + + V D ++ I + +
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLN----DMYKRSSPINVDPGDYRMIIPLESSILI------ 278
Query: 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233
S + Y++ + ++ + +TD S + ++
Sbjct: 279 -YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTVMVR 332
Query: 234 DAHRKVVLYRV 244
K+ + +
Sbjct: 333 KDDGKIYTFPL 343
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-06
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115
H +V Y+ +G +R++D++NK+ +L+ H G + + ++
Sbjct: 11 HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGGI 66
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 2e-05
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 174 EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233
S+I+ + + V G++++ +IY L + L L + +F + A
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAV 341
Query: 234 DAHRKVVLYRVPDF 247
+ + L + DF
Sbjct: 342 EKDGQSFL-EILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 1e-04
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
H+ + + S + SG + I++ + ++ I + +
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN-LRSGKLVHANILKDADQIWSVNFKGK 335
Query: 114 NQ 115
Sbjct: 336 TL 337
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 8e-04
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 179 SLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYLVASDAH 236
L E V G D + +Y+ NK +L H G V ++ + S
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKF--LLQLSGHDGGVWALKYAHGGILVSGSTDR 74
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 4e-06
Identities = 29/212 (13%), Positives = 59/212 (27%), Gaps = 22/212 (10%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
+ V G + SG V++WD + + + H + + D
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN----RVYSLQFD 186
Query: 114 NQRMISIVENG---------AKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA 164
++S + ++ + ++ + ++ G ADS + I +
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 246
Query: 165 KVSSLPIDYEPSSISLDHEH----GLVAVGGADSKVHIYELNN----KSLSPKAELDHLG 216
+ S V D V +++L ++L G
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 306
Query: 217 PVTDCSFSPSNEYL-VASDAHRKVVLYRVPDF 247
V S + V S + V DF
Sbjct: 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-05
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP 112
+ H V G I SG +++W V + + H G +
Sbjct: 11 VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGVWSSQMRD 67
Query: 113 DNQRM 117
+
Sbjct: 68 NIIIS 72
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 9e-05
Identities = 20/159 (12%), Positives = 46/159 (28%), Gaps = 15/159 (9%)
Query: 11 TLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSG 70
T T +G + + + IR + + I+T +
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227
Query: 71 FYIASGDISGKVRIWDTVNKEHILKNE-------FHPIGGPIKDIAWSPDNQRMISI--V 121
+ SG+ V+IWD + + + K+ + + + + +
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 122 ENGAKVSSLPIDYEP------SSISLDHEHGLVAVGGAD 154
+ G + +L I + + AVG +
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 2e-05
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 57 HSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK-NEFHPIGGPIKDIAWSPDNQ 115
H+ A+ S G + S D G + WD + H I I +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH--ATMITGIKTTSKGD 68
Query: 116 RM 117
Sbjct: 69 LF 70
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.5 bits (82), Expect = 0.002
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 182 HEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVASDAHRKVV 240
++ +A G D+ V ++ +N S P H + + +V++ +
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 241 LYRVP 245
+ VP
Sbjct: 294 FWNVP 298
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 7e-05
Identities = 19/175 (10%), Positives = 49/175 (28%), Gaps = 9/175 (5%)
Query: 67 SPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAK 126
Y+ + + + D + + K+ P +PDN+ + +
Sbjct: 5 KAGHEYMIVTNYPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 127 VSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGL 186
+ + +D ++ + VG + +I +G +V + + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 187 VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVL 241
+ V + P V + VA K+ +
Sbjct: 124 LEV--------FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV 170
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 25/116 (21%), Positives = 33/116 (28%), Gaps = 6/116 (5%)
Query: 46 ENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH--PIGG 103
+ S HS V ++ SG + S GK+R WD KE I H I
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 104 PIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISI 159
+A + K S + D L V D I
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLKKGWR---SGMGADLNESLCCV-CLDRSIRW 388
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.001
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 175 PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD 234
+ + E LVA G D+ + IY + KA H V + + + LV+S
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSG 276
Query: 235 AHRKVVLYRV 244
A + + V
Sbjct: 277 ADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.5 bits (82), Expect = 0.002
Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 54 YTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPD 113
+ + +A+G + + I+ I+K + + ++ W
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-ALNAHKDGVNNLLWETP 269
Query: 114 NQ 115
+
Sbjct: 270 ST 271
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.3 bits (79), Expect = 0.004
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 38 NSVIIRNIENPA-ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88
++ I +++ P I H VN + + S ++ W+ V
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNVV 287
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (84), Expect = 0.001
Identities = 8/57 (14%), Positives = 15/57 (26%)
Query: 72 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVS 128
YI + K+ + DT G +P + + V +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV 59
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 0.001
Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 72 YIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLP 131
YIAS + S ++ +W+ ++ + + + G ++ + SPD + + V +V +
Sbjct: 7 YIASPE-SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 132 IDYEPSSISLDHEHGLVA 149
I + +++ E L
Sbjct: 66 IAPDDGALTFAAESALPG 83
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (85), Expect = 0.002
Identities = 25/192 (13%), Positives = 56/192 (29%), Gaps = 20/192 (10%)
Query: 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP---IKDIAWSPDNQR 116
AV++++ S SG Y+ GKV + D KE E +++
Sbjct: 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 117 MISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPS 176
I+ + +D E + + + +
Sbjct: 123 AIAGAYWPPQYVI--MDGETLEPKKIQSTRGMTYDEQE--------------YHPEPRVA 166
Query: 177 SISLDHEHGLVAVGGADS-KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA 235
+I H V ++ K+ + + + + E+ + D S+ Y + +
Sbjct: 167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN 226
Query: 236 HRKVVLYRVPDF 247
R ++
Sbjct: 227 ARNKLVVIDTKE 238
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.002
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 14/121 (11%)
Query: 53 IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKD----- 107
+ T + +A + SG +R+WD + E H
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR 230
Query: 108 -IAWSPDNQRMISIVENGAKVSSLPIDYEPSSI--------SLDHEHGLVAVGGADSKIS 158
++ + D + + + + ++ L + + D I
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290
Query: 159 I 159
I
Sbjct: 291 I 291
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 248 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.8 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.79 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.74 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.68 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.67 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.65 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.61 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.58 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.56 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.55 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.54 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.51 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.5 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.46 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.44 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.42 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.3 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.22 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.21 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.13 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.01 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.75 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.63 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.58 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.57 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.25 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.24 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.19 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.08 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.03 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.01 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.86 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.82 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.76 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.72 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.63 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.57 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.47 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.35 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.25 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.05 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.96 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.7 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.51 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.51 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.94 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.87 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.7 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.46 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.98 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.4 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 87.63 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 81.65 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.1e-45 Score=273.84 Aligned_cols=246 Identities=30% Similarity=0.539 Sum_probs=213.4
Q ss_pred cCcceecccccccccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeE
Q psy16005 3 YSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKV 82 (248)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 82 (248)
+++..+++.+|..+++.+..++++|+|+.|+++.++.+.+|++++++....+.+|.+.|++++|+|+|++|++|+.||+|
T Consensus 3 ~~~~~~~~~~p~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i 82 (311)
T d1nr0a1 3 FSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82 (311)
T ss_dssp CEEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccccccccCCCCCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceE
Confidence 34567889999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---EEEEEccC----------CCCCceeEeCCCCCE-E
Q psy16005 83 RIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---AKVSSLPI----------DYEPSSISLDHEHGL-V 148 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~i~~~~~----------~~~~~~~~~~~~~~~-~ 148 (248)
++||+.+++......+..|..+|.+++|+|+++++++++.+. .++|+++. ...+.+++|+|++++ +
T Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l 162 (311)
T d1nr0a1 83 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI 162 (311)
T ss_dssp EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred eeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence 999999887766667888999999999999999999998654 58898753 234678899999884 7
Q ss_pred EEEcCCCeEEEEEC--Cceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcc------cccCCcCeE
Q psy16005 149 AVGGADSKISIVEN--GAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKA------ELDHLGPVT 219 (248)
Q Consensus 149 ~~~~~~~~i~~~~~--~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------~~~~~~~v~ 219 (248)
++++.|+.|++||. ++....+. +...+.+++++|+++++++++.|+.|++||..+++....+ ..+|.+.|+
T Consensus 163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~ 242 (311)
T d1nr0a1 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 242 (311)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred cccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 88999999999993 34444443 4567899999999999999999999999999887543222 235889999
Q ss_pred EEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+++|+|++++|++++.||.|+|||+++++
T Consensus 243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 243 GLTWSPDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999998764
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-41 Score=257.52 Aligned_cols=232 Identities=17% Similarity=0.202 Sum_probs=202.7
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceee-----eeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISD-----IYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVN 89 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 89 (248)
.|...|.+++|+|+|++|++|+|+.|+|||+.++.... ....|.+.|.+++|+|++++|++|+.||.|++||+..
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 58899999999999999999999999999997654322 2347889999999999999999999999999999987
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
........+..|...+..++|+|++.++++++.++ +.+|++.. ...+.++++++++..+++++.|+.++
T Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~ 208 (337)
T d1gxra_ 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66555567788899999999999999999998775 68888753 45677899999999999999999999
Q ss_pred EEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC
Q psy16005 159 IVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH 236 (248)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 236 (248)
+|| .++.+..+.+...+.+++|+|++++|++|+.|+.+++||+++++.. ....|...|++++|+|++++|++++.|
T Consensus 209 i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~s~s~D 286 (337)
T d1gxra_ 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc--cccccccccceEEECCCCCEEEEEeCC
Confidence 999 5677777888889999999999999999999999999999988764 233689999999999999999999999
Q ss_pred CeEEEEECCCCC
Q psy16005 237 RKVVLYRVPDFE 248 (248)
Q Consensus 237 ~~i~vw~~~~~~ 248 (248)
|.|++||+.+++
T Consensus 287 g~i~iwd~~~~~ 298 (337)
T d1gxra_ 287 NLLNAWRTPYGA 298 (337)
T ss_dssp SEEEEEETTTCC
T ss_pred CeEEEEECCCCC
Confidence 999999998864
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-40 Score=248.75 Aligned_cols=227 Identities=16% Similarity=0.169 Sum_probs=199.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCC--ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENP--AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
..|.+.|.+++|+|+|++|++++ |+.|++||+... +....+..|...+.+++|+|++.++++++.|+.|++|++.++
T Consensus 94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~ 173 (337)
T d1gxra_ 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173 (337)
T ss_dssp SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35778899999999999999986 999999998754 455667789999999999999999999999999999999988
Q ss_pred ceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC---------CCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 91 EHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI---------DYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
+.. .....|...+.+++|+++++.+++++.++ +++|+++. ...+.+++++|+++.+++++.++.+++|
T Consensus 174 ~~~--~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~ 251 (337)
T d1gxra_ 174 TLV--RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp EEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ccc--ccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccc
Confidence 754 56667889999999999999999999777 58998753 4567889999999999999999999999
Q ss_pred E--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCe
Q psy16005 161 E--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRK 238 (248)
Q Consensus 161 ~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 238 (248)
| .++......+...+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||+
T Consensus 252 d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp ETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred cccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 9 4445555567778999999999999999999999999999998875443 58899999999999999999999999
Q ss_pred EEEEEC
Q psy16005 239 VVLYRV 244 (248)
Q Consensus 239 i~vw~~ 244 (248)
|+|||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-40 Score=255.96 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=190.8
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCc--eeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPA--ISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
..+|+|++|+|||++||+++ ++.|++||+.+++ ....+.+|.++|.+++|+|++++|++++.|++|++||+.++...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 46799999999999999987 8999999998775 55677899999999999999999999999999999999887766
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC--------------CCCCceeEeCCCCCEEEEEcCCCeEE
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI--------------DYEPSSISLDHEHGLVAVGGADSKIS 158 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (248)
....+..|...|.+++|+|+++.|++++.++ +++|++.. ...+.+++|+|+++++++++.|+.++
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence 6667778899999999999999999999877 58887642 34567899999999999999999999
Q ss_pred EEECCc--------------------eeeee-cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 159 IVENGA--------------------KVSSL-PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 159 ~~~~~~--------------------~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
+|+... ..... .+...+.+++|+|++++|++++.|+.|++||+.+++.+..+. .|..+
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~ 245 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SETLP 245 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCC
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee-ccccc
Confidence 998321 11111 234457889999999999999999999999999988765554 68889
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
|.+++|+|++++|++|. |+.+++|..+
T Consensus 246 v~s~~fs~d~~~la~g~-d~~~~~~~~~ 272 (371)
T d1k8kc_ 246 LLAVTFITESSLVAAGH-DCFPVLFTYD 272 (371)
T ss_dssp EEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred ceeeeecCCCCEEEEEc-CCceEEEEee
Confidence 99999999998887665 6777776543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-39 Score=246.38 Aligned_cols=229 Identities=14% Similarity=0.198 Sum_probs=193.4
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|++++|+|++++|++|+ ||.|++||+.+++.+..+..|..+|.+++|+|+++++++|+.|+.+++|+......
T Consensus 52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~ 131 (340)
T d1tbga_ 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence 36999999999999999999997 99999999999999999999999999999999999999999999999999754321
Q ss_pred ee--e-----------------------------------------eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEE
Q psy16005 93 IL--K-----------------------------------------NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVS 128 (248)
Q Consensus 93 ~~--~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~ 128 (248)
.. . .....+...+....+.+.+..++++..++ +++|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~ 211 (340)
T d1tbga_ 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEE
Confidence 10 0 01112345567777888888888888776 5899
Q ss_pred EccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEEC--Cceeeeec---ccCCCceEEEcCCCCEEEEEcCC
Q psy16005 129 SLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVEN--GAKVSSLP---IDYEPSSISLDHEHGLVAVGGAD 193 (248)
Q Consensus 129 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d 193 (248)
+++. ...+.+++++|+++++++++.|+.+++|+. ......+. ....+.+++|+|++++|++|+.|
T Consensus 212 d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d 291 (340)
T d1tbga_ 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECC
Confidence 9753 456788999999999999999999999993 33444332 34557899999999999999999
Q ss_pred CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
|.|++||+.+++.+..+. +|.++|++++|+|++++|++++.||.|+|||
T Consensus 292 g~i~iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 292 FNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999988876554 7999999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.7e-40 Score=247.06 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=188.7
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee--eeeecCCcceEEEEECcCCcEEEEEcc--CCeEEEEECC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDI--SGKVRIWDTV 88 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~ 88 (248)
..|...|++++|+|+|++|++|+ |+.|++||+.+++.. ..+..|..+|.+++|+|++++|++++. +..+++|+++
T Consensus 55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~ 134 (311)
T d1nr0a1 55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134 (311)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccc
Confidence 45889999999999999999987 999999999887643 457789999999999999999998875 4569999999
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCE-EEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQR-MISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
+++.. ..+.+|...|.+++|+|++++ +++++.++ +++|+++. ...+.++.++|+++++++++.|+.
T Consensus 135 ~~~~~--~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~ 212 (311)
T d1nr0a1 135 TGTSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 212 (311)
T ss_dssp TCCBC--BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccccc--ccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccc
Confidence 88754 567889999999999999986 67777766 69999763 456789999999999999999999
Q ss_pred EEEEE--CCceeeeec--------ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 157 ISIVE--NGAKVSSLP--------IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 157 i~~~~--~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
+++|| .+.....+. +...+.+++|+|++++|++|+.||.|+|||+++++....+...+......+.+.++
T Consensus 213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~ 292 (311)
T d1nr0a1 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292 (311)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec
Confidence 99999 444444443 34568899999999999999999999999999998766554333222333344445
Q ss_pred CcEEEEEcCCCeEEEEECC
Q psy16005 227 NEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 227 ~~~l~~~~~d~~i~vw~~~ 245 (248)
+++|++++.||.|++||.+
T Consensus 293 ~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 KQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSCEEEEETTCCEEEEETT
T ss_pred CCEEEEEECCCEEEEEeCC
Confidence 6689999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-40 Score=253.94 Aligned_cols=229 Identities=12% Similarity=0.201 Sum_probs=189.6
Q ss_pred cccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee------------------cCCcceEEEEECcCCcEEEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT------------------EHSCAVNVAKYSPSGFYIASG 76 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~------------------~~~~~v~~~~~s~~~~~l~~~ 76 (248)
.|.+.|+|++|+|||++|++|+|+.|++||+.+++....+. .|...|.+++|+|++++|++|
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 48899999999999999999999999999999887765543 456679999999999999999
Q ss_pred ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc------------------------
Q psy16005 77 DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP------------------------ 131 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~------------------------ 131 (248)
+.||.|++||...++.. ....+|...|.++++++++..+++++.++ +++|+..
T Consensus 140 ~~dg~v~i~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (388)
T d1erja_ 140 AEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 217 (388)
T ss_dssp ETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred ccccccccccccccccc--cccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence 99999999999988754 55667888888888888888877777665 3666641
Q ss_pred -----------------------------------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc--e---------
Q psy16005 132 -----------------------------------IDYEPSSISLDHEHGLVAVGGADSKISIVENGA--K--------- 165 (248)
Q Consensus 132 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--------- 165 (248)
+...+.+++++|+++++++++.|+.+++||... .
T Consensus 218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 297 (388)
T d1erja_ 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297 (388)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc
Confidence 112456789999999999999999999998321 1
Q ss_pred ----eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEE------cCCCcEEEEEcC
Q psy16005 166 ----VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSF------SPSNEYLVASDA 235 (248)
Q Consensus 166 ----~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~ 235 (248)
.....+...+.+++|+|++++|++|+.||.|++||+++++.+..+. +|.+.|.++++ +|++++|++++.
T Consensus 298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~-~H~~~V~~~~~~~~~~~spd~~~l~s~s~ 376 (388)
T d1erja_ 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSG 376 (388)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred cceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe-CCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence 1112345567899999999999999999999999999998876655 79999999875 678999999999
Q ss_pred CCeEEEEECCC
Q psy16005 236 HRKVVLYRVPD 246 (248)
Q Consensus 236 d~~i~vw~~~~ 246 (248)
||+|+||+++.
T Consensus 377 Dg~I~iW~~~k 387 (388)
T d1erja_ 377 DCKARIWKYKK 387 (388)
T ss_dssp TSEEEEEEEEE
T ss_pred CCEEEEEeeee
Confidence 99999999853
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.2e-39 Score=241.86 Aligned_cols=236 Identities=17% Similarity=0.213 Sum_probs=196.9
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
.+..+|.+.|++++|+|+|++|++|+ |+.|++||+.+++..+.+. .|...|++++|+|++++ ++++.|+.+++|+..
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAG 84 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSS
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccC
Confidence 45567999999999999999999987 9999999999998887774 68999999999999875 556678999999987
Q ss_pred CCcee-eeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEcc------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 89 NKEHI-LKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLP------IDYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 89 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
..... .......+...+.+++|+|+++.++++..+.+.+|+.. ......+++++|+++++++++.|+.+++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d 164 (299)
T d1nr0a2 85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164 (299)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54421 11223346778999999999999999999988888753 445678899999999999999999999999
Q ss_pred --CCce--eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCc--ccccCCcCeEEEEEcCCCcEEEEEcC
Q psy16005 162 --NGAK--VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPK--AELDHLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 162 --~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.++. .....+...+.+++|+|++++|++++.|+.|++||+.++..... ....|...|++++|+|++++|++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 165 LSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp EETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence 2332 23345677899999999999999999999999999987654322 22358899999999999999999999
Q ss_pred CCeEEEEECCCC
Q psy16005 236 HRKVVLYRVPDF 247 (248)
Q Consensus 236 d~~i~vw~~~~~ 247 (248)
||.|++||++++
T Consensus 245 dg~i~iwd~~~~ 256 (299)
T d1nr0a2 245 DNSVIVWNMNKP 256 (299)
T ss_dssp TSCEEEEETTCT
T ss_pred CCEEEEEECCCC
Confidence 999999999875
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-38 Score=237.28 Aligned_cols=227 Identities=15% Similarity=0.207 Sum_probs=184.2
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|++++|+|++++|++++ |+.|++||+.+++....+.+|...|.+++|+|++.+++++..++.+.+|+....+.
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 93 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccc
Confidence 46999999999999999999987 99999999999999999999999999999999999999999999999999887663
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVE 161 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (248)
. ..+..|...+.++.|+|+++.+++++.++. ++|+++. ...+..++++++++++++++.|+.+++|+
T Consensus 94 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~ 171 (317)
T d1vyhc1 94 I--RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171 (317)
T ss_dssp E--ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred c--cccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence 3 445566777777777777777777776654 6776542 23345566666666666666666666665
Q ss_pred C----------------------------------------------------------------Cceeeeec-ccCCCc
Q psy16005 162 N----------------------------------------------------------------GAKVSSLP-IDYEPS 176 (248)
Q Consensus 162 ~----------------------------------------------------------------~~~~~~~~-~~~~~~ 176 (248)
. ++.+..+. +...+.
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred eccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 1 12222222 234567
Q ss_pred eEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 177 SISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 177 ~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
+++++|++++|++|+.||.|++||+++++.+..+. +|.+.|++++|+|++++|++++.||+|+|||
T Consensus 252 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 89999999999999999999999999998876655 7999999999999999999999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-35 Score=222.92 Aligned_cols=246 Identities=24% Similarity=0.319 Sum_probs=189.5
Q ss_pred CcCcceecccccccccCCcEEEEeCCCCCEEEEeCCcE--EEEEecCCC--ceeeeeecC-CcceEEEEECc--CCcEEE
Q psy16005 2 SYSNKYIFATLPRTQRGQPIVLGGDPKGKNFLYTNGNS--VIIRNIENP--AISDIYTEH-SCAVNVAKYSP--SGFYIA 74 (248)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~--v~v~~~~~~--~~~~~~~~~-~~~v~~~~~s~--~~~~l~ 74 (248)
+.+++.+++..|...++.+++++|+|+|+.|+++++.. ++.|+.... .....+.+| ...|++++|+| ++++|+
T Consensus 2 ~~~l~~~~p~~p~t~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~la 81 (325)
T d1pgua1 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 81 (325)
T ss_dssp CEEEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred ccccccccCCcCCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEE
Confidence 34567778888888888999999999999999987554 455554332 334556677 46899999998 678999
Q ss_pred EEccCCeEEEEECCCCceee------eeeccCCCCCeeEEEEecCCCEEEEEeCCc---EEEEEcc----------CCCC
Q psy16005 75 SGDISGKVRIWDTVNKEHIL------KNEFHPIGGPIKDIAWSPDNQRMISIVENG---AKVSSLP----------IDYE 135 (248)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~~i~~~~----------~~~~ 135 (248)
+|+.||+|++||+..++... ...+..|.++|.+++|+++++++++++.+. ..+|+++ +...
T Consensus 82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 161 (325)
T d1pgua1 82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQR 161 (325)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSC
T ss_pred EEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccc
Confidence 99999999999987654321 123456788999999999999999887532 5777754 2345
Q ss_pred CceeEeCCCCCE-EEEEcCCCeEEEEECC--ceeeeec----ccCCCceEEEcCC-CCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 136 PSSISLDHEHGL-VAVGGADSKISIVENG--AKVSSLP----IDYEPSSISLDHE-HGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 136 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~--~~~~~~~----~~~~~~~~~~s~~-~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
+.+++|+|++.. +++++.|+.+++|+.. +...... +...+.+++|+|+ +.+|++++.|+.|++||+++++..
T Consensus 162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~ 241 (325)
T d1pgua1 162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241 (325)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccc
Confidence 678999998875 6789999999999943 3333332 2345789999996 579999999999999999998876
Q ss_pred CcccccCCcCeEEEEEc---CCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 208 PKAELDHLGPVTDCSFS---PSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 208 ~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
..+. +|..++..+.|+ |++++|++++.|+.|+|||+++++
T Consensus 242 ~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 242 KYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp EECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred cccc-ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence 5554 566666655555 789999999999999999998764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-35 Score=226.58 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=183.9
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee--eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCC
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS--DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNK 90 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 90 (248)
.+|.+.|.+++|+|++++|++++ |+.|++||+.++... ..+..|...|.+++|+|+++.|++++.|+.+++|++...
T Consensus 48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~ 127 (371)
T d1k8kc_ 48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127 (371)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecc
Confidence 35889999999999999999987 999999999876644 345578899999999999999999999999999998765
Q ss_pred cee--eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------------------------CCCCcee
Q psy16005 91 EHI--LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------------------------DYEPSSI 139 (248)
Q Consensus 91 ~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------------------------~~~~~~~ 139 (248)
... .......|...|.+++|+|++++|++++.++ +++|+... ...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 207 (371)
T d1k8kc_ 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 207 (371)
T ss_dssp TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred cccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE
Confidence 432 3344567889999999999999999998777 59998632 1235678
Q ss_pred EeCCCCCEEEEEcCCCeEEEEE--CCceeeeecc-cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC---------
Q psy16005 140 SLDHEHGLVAVGGADSKISIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS--------- 207 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~--------- 207 (248)
+|+|+++.+++++.|+.|++|| .++.+..+.. ..++.+++|+|++++|++|. |+.+++|........
T Consensus 208 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~ 286 (371)
T d1k8kc_ 208 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDV 286 (371)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCC
T ss_pred EeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecC
Confidence 9999999999999999999999 5556665554 45689999999998888766 676666654332100
Q ss_pred -------------------------------CcccccCCcCeEEEEEcCCC----cEEEEEcCCCeEEEEECCC
Q psy16005 208 -------------------------------PKAELDHLGPVTDCSFSPSN----EYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 208 -------------------------------~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~vw~~~~ 246 (248)
......|.+.|+++++.|.+ ..++|++.||.|++||+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 00011388899999998754 3689999999999999864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.1e-34 Score=214.20 Aligned_cols=231 Identities=10% Similarity=0.084 Sum_probs=177.2
Q ss_pred ccccccCCcEEEEeCC--CCCEEEEeC-CcEEEEEecCCCcee--------eeeecCCcceEEEEECcCCcEEEEEc--c
Q psy16005 12 LPRTQRGQPIVLGGDP--KGKNFLYTN-GNSVIIRNIENPAIS--------DIYTEHSCAVNVAKYSPSGFYIASGD--I 78 (248)
Q Consensus 12 ~~~~~~~~v~~~~~s~--~~~~l~~~~-~~~v~v~~~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~--~ 78 (248)
+..++...|++++|+| +|++|++++ ||+|++||+..++.. ..+..|.++|.+++|+++++++++++ .
T Consensus 58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~ 137 (325)
T d1pgua1 58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137 (325)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc
Confidence 3334457899999998 567999886 999999998765432 23456888999999999999988765 4
Q ss_pred CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE-EEEEeCCc-EEEEEccC-------------CCCCceeEeCC
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR-MISIVENG-AKVSSLPI-------------DYEPSSISLDH 143 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~-~~i~~~~~-------------~~~~~~~~~~~ 143 (248)
++.+++|+.++++.+ ..+.+|...|.+++|+|++++ +++++.++ +++|++.. ...+.+++|+|
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~p 215 (325)
T d1pgua1 138 DNFGVFISWDSGNSL--GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 215 (325)
T ss_dssp SCSEEEEETTTCCEE--EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred cceEEEEeecccccc--eeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecc
Confidence 678999999988754 567789999999999999876 56677666 58898642 23467899999
Q ss_pred C-CCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEc---CCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-cCC
Q psy16005 144 E-HGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLD---HEHGLVAVGGADSKVHIYELNNKSLSPKAEL-DHL 215 (248)
Q Consensus 144 ~-~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s---~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~ 215 (248)
+ +.++++++.|+.|++|| .++.+..+. +...+..+.|+ |++++|++++.|+.|+|||+++++.+..+.. .+.
T Consensus 216 d~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 295 (325)
T d1pgua1 216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295 (325)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred ccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc
Confidence 6 67899999999999999 556666665 34445555555 7899999999999999999999887655442 233
Q ss_pred cCeEEEEEcCC-CcEEEEEcCCCeEEEEEC
Q psy16005 216 GPVTDCSFSPS-NEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 216 ~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~ 244 (248)
..+..+++.+. +.+|++++.||.|++||+
T Consensus 296 ~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 33444444433 347899999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.8e-33 Score=211.45 Aligned_cols=198 Identities=15% Similarity=0.214 Sum_probs=166.8
Q ss_pred ceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-EE
Q psy16005 49 AISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-KV 127 (248)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~i 127 (248)
+..+++++|.++|++++|+|++++|++|+.||+|++||+.+++.+ ..+..|...|.+++|+|+++++++++.++. .+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--HAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE--EEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeE--EEEecccccEEeeEeeccceeeeeecccceeec
Confidence 456778899999999999999999999999999999999998855 567788999999999999999999987764 66
Q ss_pred EEccC-------------------------------------------------------CCCCceeEeCCCCCEEEEEc
Q psy16005 128 SSLPI-------------------------------------------------------DYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 128 ~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 152 (248)
|+... ...+....+.+.+.+++++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence 66411 12234556677888999999
Q ss_pred CCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc-ccCCcCeEEEEEcCCCc
Q psy16005 153 ADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-LDHLGPVTDCSFSPSNE 228 (248)
Q Consensus 153 ~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~ 228 (248)
.|+.+++|| .++.+..+. +...+.+++|+|++++|++|+.|+.|++||++..+...... ..+...|.+++|+|+++
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 283 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence 999999999 555666655 46678999999999999999999999999999877654332 24677899999999999
Q ss_pred EEEEEcCCCeEEEEECCCCC
Q psy16005 229 YLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 229 ~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|++++.||.|++||+.+++
T Consensus 284 ~l~~g~~dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 284 LLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp EEEEEETTSCEEEEETTTCC
T ss_pred EEEEEECCCEEEEEECCCCc
Confidence 99999999999999998764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-32 Score=207.23 Aligned_cols=228 Identities=18% Similarity=0.165 Sum_probs=184.4
Q ss_pred cccCCc-EEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 15 TQRGQP-IVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 15 ~~~~~v-~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
+|...| +|+++ ++++|++|+ |+.|++||+.+++.+..+.+|.++|.+++|+|+ .+|++|+.||+|++|+....+.
T Consensus 10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~ 86 (355)
T d1nexb2 10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCC 86 (355)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEE
T ss_pred CcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccc
Confidence 476665 56655 688999987 999999999999999999999999999999986 5799999999999999998876
Q ss_pred eeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCC-------------------------------CceeE
Q psy16005 93 ILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYE-------------------------------PSSIS 140 (248)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~-------------------------------~~~~~ 140 (248)
........+........+.++++.+++++.++ +++|++..... .....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 166 (355)
T d1nexb2 87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166 (355)
T ss_dssp EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE
T ss_pred ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc
Confidence 65444444455566777889999999999877 49999753211 11223
Q ss_pred eCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 141 LDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
..+++++++.+..|+.+++|| .++.+.... ....+.++.++|++.++++++.|+.|++||.+++.....+. +|...
T Consensus 167 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~ 245 (355)
T d1nexb2 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTAL 245 (355)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSC
T ss_pred cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc-ccccc
Confidence 456788999999999999999 444444443 45557889999999999999999999999999988766554 79999
Q ss_pred eEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 218 VTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 218 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|.+++|++ ++|++++.||.|++||+++++
T Consensus 246 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 274 (355)
T d1nexb2 246 VGLLRLSD--KFLVSAAADGSIRGWDANDYS 274 (355)
T ss_dssp CCEEEECS--SEEEEECTTSEEEEEETTTCC
T ss_pred cccccccc--ceeeeeecccccccccccccc
Confidence 99999864 689999999999999998753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-32 Score=205.19 Aligned_cols=197 Identities=25% Similarity=0.369 Sum_probs=165.5
Q ss_pred CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEE
Q psy16005 48 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKV 127 (248)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i 127 (248)
|+..+.+.+|.++|++++|+|++++|++|+.||+|++||+++++... .....|...|.+++|+|++++++++.++.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-VFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-CSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEcCCCCCcEEEEEeeccceeecccceeeEEE
Confidence 56678889999999999999999999999999999999999887542 22356889999999999999888777888899
Q ss_pred EEccC-------------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCC
Q psy16005 128 SSLPI-------------DYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADS 194 (248)
Q Consensus 128 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 194 (248)
|+... ...+..++++++++.++++. ++.+.+|+..+... ......+.+++++|++++|++|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE-VPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE-EECSSCEEEEEECTTSCEEEEEETTS
T ss_pred eccCCccccccccccccccccccccccccccccccccc-cccccccccccccc-cccccccccccccccccccccccccc
Confidence 98642 23456788999998776654 56899999665443 44566778999999999999999999
Q ss_pred cEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCC
Q psy16005 195 KVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDF 247 (248)
Q Consensus 195 ~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 247 (248)
.|++||+++++........|...|++++|+|++++|++++.|+.|++||+.++
T Consensus 159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 211 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211 (299)
T ss_dssp EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999887654445578999999999999999999999999999998654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-32 Score=203.68 Aligned_cols=228 Identities=13% Similarity=0.148 Sum_probs=169.6
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
.+|.+.|.+ +++++|++|++|+ |+.|+|||+.++++++.+.+|...|.+++|+|+ +|++++.|+.+++|+......
T Consensus 13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~ 89 (342)
T d2ovrb2 13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC 89 (342)
T ss_dssp ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEE
T ss_pred CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccc
Confidence 368888865 4667899999987 999999999999999999999999999999875 899999999999998754321
Q ss_pred ee------------------------------------------------------------------------------
Q psy16005 93 IL------------------------------------------------------------------------------ 94 (248)
Q Consensus 93 ~~------------------------------------------------------------------------------ 94 (248)
..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~ 169 (342)
T d2ovrb2 90 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169 (342)
T ss_dssp EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE
T ss_pred eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccccee
Confidence 00
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCC--------CceeEeCCCCCEEEEEcCCCeEEEEEC--C
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYE--------PSSISLDHEHGLVAVGGADSKISIVEN--G 163 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 163 (248)
...+.+|.. ....+.++++++++++.++ +++|+++.... ....+++++++++++++.|+.|++||. .
T Consensus 170 ~~~~~~~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~ 247 (342)
T d2ovrb2 170 LHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 247 (342)
T ss_dssp EEEECCCSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred eEEEcCccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccc
Confidence 001112222 2344556788888888776 58999764322 222344556679999999999999993 3
Q ss_pred ceeeeeccc--CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc----ccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 164 AKVSSLPID--YEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE----LDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 164 ~~~~~~~~~--~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
+....+... ......+++++++++++|+.||.|++||+++++.+..+. .+|.+.|++++|+|++.+|++|+.||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG 327 (342)
T d2ovrb2 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327 (342)
T ss_dssp CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred cccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 344444321 122334455567799999999999999999998765443 24778899999999999999999888
Q ss_pred e----EEEEECCC
Q psy16005 238 K----VVLYRVPD 246 (248)
Q Consensus 238 ~----i~vw~~~~ 246 (248)
+ |++||++.
T Consensus 328 t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 328 TEETKLLVLDFDV 340 (342)
T ss_dssp SSCCEEEEEECCC
T ss_pred CCeeEEEEEeCCC
Confidence 4 99999863
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-31 Score=200.85 Aligned_cols=237 Identities=12% Similarity=0.124 Sum_probs=176.9
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceee---eeecCCcceEEEEECcC-CcEEEEEccCCeEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISD---IYTEHSCAVNVAKYSPS-GFYIASGDISGKVRIW 85 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~---~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw 85 (248)
.+...|...|++++|+|++++|++++ |++|+|||++++.... ...+|..+|.+++|+|+ +.+|++|+.||.|++|
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 36678999999999999999999987 9999999997755432 23379999999999986 5689999999999999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCC----------------CCCceeEeCCCCCEE
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPID----------------YEPSSISLDHEHGLV 148 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~----------------~~~~~~~~~~~~~~~ 148 (248)
++.......... ..+........+.++...+++++.++ +++|+++.. .......+.+.+..+
T Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALT-NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECB-SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eccccccccccc-ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 998876543222 22334445556677788888888776 599987422 123345667788899
Q ss_pred EEEcCCCeEEEEECC--cee----eeecccCCCceEEEc-CCCCEEEEEcCCCcEEEEEcCCCCCCCc------------
Q psy16005 149 AVGGADSKISIVENG--AKV----SSLPIDYEPSSISLD-HEHGLVAVGGADSKVHIYELNNKSLSPK------------ 209 (248)
Q Consensus 149 ~~~~~~~~i~~~~~~--~~~----~~~~~~~~~~~~~~s-~~~~~l~~~~~d~~v~i~d~~~~~~~~~------------ 209 (248)
++++.|+.+++|+.. ... ..........+..+. +++..+++++.||.+.+|+.........
T Consensus 164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred eeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence 999999999999932 211 111223334444444 4677999999999999999875432211
Q ss_pred --ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 210 --AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 210 --~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
....|...|++++|+|++++|++|+.||.|++||+++++
T Consensus 244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence 112466789999999999999999999999999998763
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.1e-32 Score=208.93 Aligned_cols=235 Identities=13% Similarity=0.147 Sum_probs=172.0
Q ss_pred cccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCce------eeeeecCCcceEEEE------ECc-CCcEEEEE
Q psy16005 11 TLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAI------SDIYTEHSCAVNVAK------YSP-SGFYIASG 76 (248)
Q Consensus 11 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~------~~~~~~~~~~v~~~~------~s~-~~~~l~~~ 76 (248)
....+|.+.|.++++++ +++++++ |+.|++||..+.+. ......|...+..+. .+. ++.+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 45678999999999875 5888886 99999999776432 112223443333222 222 34578899
Q ss_pred ccCCeEEEEECCCCceeee--------eeccCCCCCeeEEEEecC-----CCEEEEEeCCc-EEEEEccC----------
Q psy16005 77 DISGKVRIWDTVNKEHILK--------NEFHPIGGPIKDIAWSPD-----NQRMISIVENG-AKVSSLPI---------- 132 (248)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~~-~~i~~~~~---------- 132 (248)
+.||.|++|++........ .....+...+..++|.++ +.++++++.++ +.+|++..
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 9999999999765432111 111223456778888775 35777777665 68998731
Q ss_pred ------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-------ccCCCceEEEcCCCC
Q psy16005 133 ------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-------IDYEPSSISLDHEHG 185 (248)
Q Consensus 133 ------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-------~~~~~~~~~~s~~~~ 185 (248)
...+.+++++|++ ++++|+.|+.|++|| .++.+..+. +...+.+++|+|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 1235678999987 889999999999999 344444332 456789999999999
Q ss_pred EEEEEcCCCc---EEEEEcCCCCCCCcc------------cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 186 LVAVGGADSK---VHIYELNNKSLSPKA------------ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 186 ~l~~~~~d~~---v~i~d~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|++|+.|++ |++||+++++.+..+ ..+|.+.|++++|+||+++|++++.|++|++||+++++
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence 9999998874 999999987654332 23699999999999999999999999999999998874
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-32 Score=200.22 Aligned_cols=226 Identities=18% Similarity=0.157 Sum_probs=168.8
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
+++..+. +|.++|++++|+| |++|+ ||.|++||+.++ ...|...|.++++++++ .+++++.|+++++|
T Consensus 4 ~~i~~l~-gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 4 EVLKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEC-CCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred ceeEEEC-CCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 4555664 5999999999998 77776 999999998754 35789999999998764 57889999999999
Q ss_pred ECCCCcee---ee------------------eeccCC--------CCCeeEEEEecCCCEEEEEeCCc--EEEEEcc---
Q psy16005 86 DTVNKEHI---LK------------------NEFHPI--------GGPIKDIAWSPDNQRMISIVENG--AKVSSLP--- 131 (248)
Q Consensus 86 d~~~~~~~---~~------------------~~~~~~--------~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~--- 131 (248)
++...+.. .. ..+... .......++++++..+++++.++ +++|++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~ 152 (287)
T d1pgua2 73 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE 152 (287)
T ss_dssp TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred cccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccc
Confidence 86532100 00 000000 01122346677888888887654 6888863
Q ss_pred --------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc--eeee-e-cccCCCceEEEcCC----------CCEEEE
Q psy16005 132 --------IDYEPSSISLDHEHGLVAVGGADSKISIVENGA--KVSS-L-PIDYEPSSISLDHE----------HGLVAV 189 (248)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~-~-~~~~~~~~~~~s~~----------~~~l~~ 189 (248)
....+.+++|+|++.++++++.|+.|++||... .... + .+...+.+++|+|+ +.+|++
T Consensus 153 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s 232 (287)
T d1pgua2 153 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232 (287)
T ss_dssp EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred eeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEe
Confidence 235578899999999999999999999999433 2222 2 24566889999874 468999
Q ss_pred EcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 190 GGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 190 ~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
|+.|+.|++||+++.........+|...|++++|+|++ .|++++.|+.|++|++
T Consensus 233 gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999999999987655445555799999999999986 5888999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=6e-31 Score=200.23 Aligned_cols=175 Identities=7% Similarity=0.035 Sum_probs=139.9
Q ss_pred EEEeCC-CCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC--eEEEEECCCCceeeeeec
Q psy16005 22 VLGGDP-KGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG--KVRIWDTVNKEHILKNEF 98 (248)
Q Consensus 22 ~~~~s~-~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~ 98 (248)
+-.||| ||+++++++++.|++||+..++..+ + .|...|.+++|+|||++|++++.+. .|++||.++++. ..+
T Consensus 7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~---~~~ 81 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA---EKF 81 (360)
T ss_dssp EEEEEECGGGCEEEEETTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE---EEC
T ss_pred cccccCCCCCEEEEEECCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE---EEe
Confidence 467999 9999999999999999998877665 3 6899999999999999998876553 799999998764 356
Q ss_pred cCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEc----------CCCeE
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGG----------ADSKI 157 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~----------~~~~i 157 (248)
..|...+.+++|+||+++|++++.++ +.+|++.. .....+++|+|++++++.+. .++.+
T Consensus 82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence 67889999999999999999998877 58888753 24467889999999988543 34568
Q ss_pred EEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEc
Q psy16005 158 SIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYEL 201 (248)
Q Consensus 158 ~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~ 201 (248)
++|+ .++.............++|+|||+.|++++.++.+.+||.
T Consensus 162 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp EEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred eeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccc
Confidence 8898 3333333445555677889999999998888888877764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-30 Score=193.72 Aligned_cols=199 Identities=14% Similarity=0.217 Sum_probs=163.9
Q ss_pred CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcE-E
Q psy16005 48 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGA-K 126 (248)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~ 126 (248)
......+++|.++|++++|+|++++|++|+.||+|++||+.+++.+ ..+.+|...|.+++|+|++..++++..++. .
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~--~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTIK 84 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE--EEEeCCCCcEEEEeeecccccccccccccccc
Confidence 3445678899999999999999999999999999999999998854 667889999999999999999999987764 5
Q ss_pred EEEcc----------CCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEcCC
Q psy16005 127 VSSLP----------IDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGGAD 193 (248)
Q Consensus 127 i~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d 193 (248)
.|+.. .......+.++++++.+++++.|+.+++|+ .++....+. +...+.+++++|++.+|++++.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 164 (317)
T d1vyhc1 85 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164 (317)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence 55543 244567788999999999999999999999 455555554 45567888999999999999999
Q ss_pred CcEEEEEcCCCCCCC-------------------------------------------------------------cccc
Q psy16005 194 SKVHIYELNNKSLSP-------------------------------------------------------------KAEL 212 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~-------------------------------------------------------------~~~~ 212 (248)
+.|++|+..+++... ....
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 244 (317)
T d1vyhc1 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244 (317)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence 999999876543211 0012
Q ss_pred cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence 477889999999999999999999999999998764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.3e-30 Score=189.57 Aligned_cols=221 Identities=17% Similarity=0.225 Sum_probs=161.1
Q ss_pred ccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCce
Q psy16005 14 RTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEH 92 (248)
Q Consensus 14 ~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (248)
..|...|+|++| ||++|++|+ |+.|+|||+.+++.+..+.+|.+.|.+++| ++++|++|+.||.|++|++..+..
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~ 87 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 87 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccc
Confidence 346677888765 789999987 999999999999999999999999999987 567999999999999999876642
Q ss_pred eee-----------------------------------------eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEc
Q psy16005 93 ILK-----------------------------------------NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSL 130 (248)
Q Consensus 93 ~~~-----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~ 130 (248)
... ..+..|...+..+.+. ...+++++.++ +++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~ 165 (293)
T d1p22a2 88 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNT 165 (293)
T ss_dssp EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred cccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecC
Confidence 211 1112334444444443 34555666555 588887
Q ss_pred cCCCCC--------ceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEE
Q psy16005 131 PIDYEP--------SSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYE 200 (248)
Q Consensus 131 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d 200 (248)
.....+ ....+.+++..+++++.|+.|++|| ..+.+........ ....+++++.+|++|+.||.|++||
T Consensus 166 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 166 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAYDGKIKVWD 244 (293)
T ss_dssp TTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEECCSSEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccce-eeeeccccceEEEEEcCCCEEEEEE
Confidence 644322 1223445677999999999999999 4444444443322 2345677889999999999999999
Q ss_pred cCCCCCC--------CcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEE
Q psy16005 201 LNNKSLS--------PKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYR 243 (248)
Q Consensus 201 ~~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 243 (248)
+.+.... .....+|.+.|++++|+ +++|++++.||+|++||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 8653321 11223699999999994 57899999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=5.4e-30 Score=197.06 Aligned_cols=215 Identities=16% Similarity=0.254 Sum_probs=167.2
Q ss_pred EEEeCCcEEEEEecCCCcee----eeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee-----------
Q psy16005 32 FLYTNGNSVIIRNIENPAIS----DIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN----------- 96 (248)
Q Consensus 32 l~~~~~~~v~v~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------- 96 (248)
+-...++...+|+....+.. ....+|.+.|++++|+|||++|++|+ |+.|++||+.+++.+...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence 33345778889987654322 22237999999999999999999987 899999999887754322
Q ss_pred -----eccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 97 -----EFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 97 -----~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
....|...|.+++|+|++++|++++.++ +++|+... ...+..+.+++++..+++++.++.+++|
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 190 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190 (388)
T ss_dssp --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeee
Confidence 1234677899999999999999999887 58998753 4567788999999999999999999999
Q ss_pred EC--CceeeeecccCCCceEEEcC-CCCEEEEEcCCCcEEEEEcCCCCCCCcc------cccCCcCeEEEEEcCCCcEEE
Q psy16005 161 EN--GAKVSSLPIDYEPSSISLDH-EHGLVAVGGADSKVHIYELNNKSLSPKA------ELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 161 ~~--~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~ 231 (248)
|. ..............++.+.| ++.+|++|+.|+.|++||.+++...... ..+|...|.+++|+|++++|+
T Consensus 191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 270 (388)
T d1erja_ 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270 (388)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence 93 33444444455555666655 8889999999999999999987654332 225888999999999999999
Q ss_pred EEcCCCeEEEEECCCC
Q psy16005 232 ASDAHRKVVLYRVPDF 247 (248)
Q Consensus 232 ~~~~d~~i~vw~~~~~ 247 (248)
+++.||.|++||+.++
T Consensus 271 s~~~d~~i~iwd~~~~ 286 (388)
T d1erja_ 271 SGSLDRSVKLWNLQNA 286 (388)
T ss_dssp EEETTSEEEEEEC---
T ss_pred EEECCCcEEEEeccCC
Confidence 9999999999998764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.2e-28 Score=183.45 Aligned_cols=232 Identities=13% Similarity=0.170 Sum_probs=168.3
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecC--CcceEEEEECcCCcEEEEEccCCeEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEH--SCAVNVAKYSPSGFYIASGDISGKVR 83 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~ 83 (248)
+.+..+. .|.+.|.+++|+|++ +|++++ |+.|++|+....+........ ........++++++++++++.|+.|+
T Consensus 44 ~~~~~l~-~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 121 (355)
T d1nexb2 44 KFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121 (355)
T ss_dssp EEEEEEE-CCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred cEEEEEE-CCCCCEEEEEEcCCC-EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEE
Confidence 3444553 588999999999975 666665 999999999887766554433 33455666778888899999999999
Q ss_pred EEECCCCcee-------------------------------------------------------------eeeeccCCC
Q psy16005 84 IWDTVNKEHI-------------------------------------------------------------LKNEFHPIG 102 (248)
Q Consensus 84 iwd~~~~~~~-------------------------------------------------------------~~~~~~~~~ 102 (248)
+||+.+.... .......+.
T Consensus 122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 201 (355)
T d1nexb2 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 201 (355)
T ss_dssp EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc
Confidence 9987643210 001123355
Q ss_pred CCeeEEEEecCCCEEEEEeCCc-EEEEEccC----------CCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeeeec-
Q psy16005 103 GPIKDIAWSPDNQRMISIVENG-AKVSSLPI----------DYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSSLP- 170 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 170 (248)
..+.++.|+|+++.+++++.++ +++|+++. ...+.++.++ ++++++++.|+.|++||.......+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~ 279 (355)
T d1nexb2 202 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY 279 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceeccc
Confidence 6778888999999999988776 58888753 3445666665 57999999999999999554444333
Q ss_pred ccCCCce-EEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 171 IDYEPSS-ISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 171 ~~~~~~~-~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
+...+.+ ..+++++.++++|+ |+.|++||+++++.+.....+|.+.|.+++|+|+ ..+++++.||.++||.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp ECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred ccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 3334444 45677887777665 8999999999999876666689999999999986 57788899998766543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-28 Score=185.00 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=149.2
Q ss_pred EecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC
Q psy16005 43 RNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
|+..+.+..+.+++|.+.|.+ +++++|++|+||+.||+|+|||+.+++.+ ..+.+|...|.+++|+|+ +|++++.
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--~~~~~h~~~V~~v~~~~~--~l~s~s~ 75 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLVGHTGGVWSSQMRDN--IIISGST 75 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE--EECCCCSSCEEEEEEETT--EEEEEET
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEE--EEEeCCCCCEEEEEeCCC--cccccee
Confidence 555666777889999999865 36678999999999999999999998854 678899999999999874 8888887
Q ss_pred CcE-EEEEccC---------------------------------------------------------------------
Q psy16005 123 NGA-KVSSLPI--------------------------------------------------------------------- 132 (248)
Q Consensus 123 ~~~-~i~~~~~--------------------------------------------------------------------- 132 (248)
++. ++|+...
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 155 (342)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence 764 6665310
Q ss_pred -------------------CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecc-cCCCceEEEcCCCCEEEEE
Q psy16005 133 -------------------DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPI-DYEPSSISLDHEHGLVAVG 190 (248)
Q Consensus 133 -------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~ 190 (248)
........+.+++..+++++.|+.|++|| .++.+..+.. ...+.++ ++++++|+++
T Consensus 156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~ 233 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSG 233 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE--EEETTEEEEE
T ss_pred CCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEE--ecCCCEEEEE
Confidence 01122334556788999999999999999 4455555543 3334444 4456799999
Q ss_pred cCCCcEEEEEcCCCCCCCcccc--cCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 191 GADSKVHIYELNNKSLSPKAEL--DHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 191 ~~d~~v~i~d~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
+.|+.|++||+...+....... .|...+.++.++ ++++++++.||.|++||+++++
T Consensus 234 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCC
Confidence 9999999999988776444332 356677777765 5689999999999999999875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=3.5e-27 Score=183.93 Aligned_cols=223 Identities=12% Similarity=0.083 Sum_probs=156.1
Q ss_pred eCCCCC--EEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeec---
Q psy16005 25 GDPKGK--NFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEF--- 98 (248)
Q Consensus 25 ~s~~~~--~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 98 (248)
+++|.+ ++++.+ ++.|++||+.+++.+..+..|. .+..++|||||++|++++.|++|++||+.+++......+
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence 455543 344555 8999999999999999998764 589999999999999999999999999998875433333
Q ss_pred cCCCCCeeEEEEecCCCEEEEEe--CCcEEEEEccC--------------------------------------------
Q psy16005 99 HPIGGPIKDIAWSPDNQRMISIV--ENGAKVSSLPI-------------------------------------------- 132 (248)
Q Consensus 99 ~~~~~~v~~~~~~~~~~~l~~~~--~~~~~i~~~~~-------------------------------------------- 132 (248)
.+|...+.+++|+|||+++++++ ...+.+|+...
T Consensus 105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~ 184 (426)
T d1hzua2 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 184 (426)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence 23455566777889999887664 33356766421
Q ss_pred ---------------------CCCCceeEeCCCCCEEEEEcC-CCeEEEEE--CC-------------------------
Q psy16005 133 ---------------------DYEPSSISLDHEHGLVAVGGA-DSKISIVE--NG------------------------- 163 (248)
Q Consensus 133 ---------------------~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~--~~------------------------- 163 (248)
...+..+.++|++++++++.. +..+.+++ .+
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (426)
T d1hzua2 185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264 (426)
T ss_dssp TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence 112235677788876665543 33344443 11
Q ss_pred -----------------------------ceeeeec-ccCCCceEEEcCCCCEEEE-------EcCCCcEEEEEcCCCCC
Q psy16005 164 -----------------------------AKVSSLP-IDYEPSSISLDHEHGLVAV-------GGADSKVHIYELNNKSL 206 (248)
Q Consensus 164 -----------------------------~~~~~~~-~~~~~~~~~~s~~~~~l~~-------~~~d~~v~i~d~~~~~~ 206 (248)
+....+. +...+..++++||+++|++ +..+++|++||+++++.
T Consensus 265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~ 344 (426)
T d1hzua2 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 344 (426)
T ss_dssp EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc
Confidence 1111121 2334678999999999995 34578999999999887
Q ss_pred CCccc--------ccCCcCeEEEEEcCCCcEEEEE-----cCCCeEEEEECCCCC
Q psy16005 207 SPKAE--------LDHLGPVTDCSFSPSNEYLVAS-----DAHRKVVLYRVPDFE 248 (248)
Q Consensus 207 ~~~~~--------~~~~~~v~~~~~s~~~~~l~~~-----~~d~~i~vw~~~~~~ 248 (248)
..... ..|...|..++|||||++++.+ +.++.|+|||.+|+|
T Consensus 345 ~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 345 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp CCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred CeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 64432 1356679999999999977543 357899999999874
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=7e-28 Score=178.13 Aligned_cols=188 Identities=17% Similarity=0.301 Sum_probs=142.2
Q ss_pred CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EE
Q psy16005 48 PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AK 126 (248)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~ 126 (248)
.++++.+++|..+|++++|+| |++|+.||+|++||+.++. ..|...|.++++++++. +++++.|+ ++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~~~~~-~~s~s~D~~v~ 70 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNSKAQE-YSSISWDDTLK 70 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-------CCCCSCEEEEECCSTTC-CEEEETTTEEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-------CCCCCCEEEEEecCCCe-EEEEeeccccc
Confidence 467888999999999999987 9999999999999987542 35777888888876544 45555443 46
Q ss_pred EEEccC----------------------------------C-------CCCceeEeCCCCCEEEEEcCCC-eEEEEECCc
Q psy16005 127 VSSLPI----------------------------------D-------YEPSSISLDHEHGLVAVGGADS-KISIVENGA 164 (248)
Q Consensus 127 i~~~~~----------------------------------~-------~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~ 164 (248)
+|++.. . ......++++++..+++++.++ .+++|+...
T Consensus 71 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~ 150 (287)
T d1pgua2 71 VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD 150 (287)
T ss_dssp ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred cccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccc
Confidence 665421 0 1122345566777777777664 689998433
Q ss_pred ee--eee--cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC----------CcEE
Q psy16005 165 KV--SSL--PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS----------NEYL 230 (248)
Q Consensus 165 ~~--~~~--~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~----------~~~l 230 (248)
.. ..+ .+...+.+++|+|++.+|++|+.||.|++||+.+++........|...|.+++|+|+ +.+|
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l 230 (287)
T d1pgua2 151 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230 (287)
T ss_dssp EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred cceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCee
Confidence 22 222 245568899999999999999999999999999887655555579999999999875 4689
Q ss_pred EEEcCCCeEEEEECCCC
Q psy16005 231 VASDAHRKVVLYRVPDF 247 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~ 247 (248)
++++.|+.|++||++++
T Consensus 231 ~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 231 ATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp EEEETTSCEEEEESSCT
T ss_pred EeecCCCeEEEEECCCC
Confidence 99999999999998763
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.4e-27 Score=182.13 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=144.7
Q ss_pred ccCCcEEEEeCCCC-----CEEEEeC-CcEEEEEecCCCce------------------eeeeecCCcceEEEEECcCCc
Q psy16005 16 QRGQPIVLGGDPKG-----KNFLYTN-GNSVIIRNIENPAI------------------SDIYTEHSCAVNVAKYSPSGF 71 (248)
Q Consensus 16 ~~~~v~~~~~s~~~-----~~l~~~~-~~~v~v~~~~~~~~------------------~~~~~~~~~~v~~~~~s~~~~ 71 (248)
+...+.+++|.+++ .++++++ |+.+++|++..... ......+...+.+++|+|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg- 196 (393)
T d1sq9a_ 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG- 196 (393)
T ss_dssp GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence 44567778887753 4666665 99999999853210 11112445668899999997
Q ss_pred EEEEEccCCeEEEEECCCCceeeee----eccCCCCCeeEEEEecCCCEEEEEeCCc----EEEEEccCCCCCceeEeCC
Q psy16005 72 YIASGDISGKVRIWDTVNKEHILKN----EFHPIGGPIKDIAWSPDNQRMISIVENG----AKVSSLPIDYEPSSISLDH 143 (248)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~~i~~~~~~~~~~~~~~~~ 143 (248)
+|++|+.||+|++||+.+++.+... .+.+|..+|.+++|+|||++|++++.|+ +++|++........+....
T Consensus 197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~ 276 (393)
T d1sq9a_ 197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276 (393)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence 8899999999999999988765322 3457899999999999999999988765 5777765433322221100
Q ss_pred CCCEEEEEcCCCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCc-------
Q psy16005 144 EHGLVAVGGADSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLG------- 216 (248)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~------- 216 (248)
.. .........|...|++++|+|++++|++|+.|++|++||+++++++..+. +|.+
T Consensus 277 ~~----------------~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~-gH~~~v~~~~~ 339 (393)
T d1sq9a_ 277 HS----------------SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN-MHCDDIEIEED 339 (393)
T ss_dssp -----------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCGGGCSSGGG
T ss_pred cc----------------ccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC-CcCCcccCCcc
Confidence 00 00001112356678999999999999999999999999999987765543 4533
Q ss_pred --------------CeEEEEEcCCC----------cEEEEEcCCCeEEEEEC
Q psy16005 217 --------------PVTDCSFSPSN----------EYLVASDAHRKVVLYRV 244 (248)
Q Consensus 217 --------------~v~~~~~s~~~----------~~l~~~~~d~~i~vw~~ 244 (248)
.+.++.|.+.+ +.+++++.|+.|++|.-
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 340 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence 35566665532 34777888888888863
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=1.1e-24 Score=161.53 Aligned_cols=234 Identities=17% Similarity=0.215 Sum_probs=176.3
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVR 83 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~ 83 (248)
+++..++.+ ..+..++|+|||++|+++ . ++.|++||+.+++.+..+..+. .+..+.|+++++.++ ++..++.+.
T Consensus 23 ~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (301)
T d1l0qa2 23 KVTATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS 99 (301)
T ss_dssp EEEEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred eEEEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceee
Confidence 344455432 457899999999988654 3 7899999999999998887665 468899999987654 566778999
Q ss_pred EEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-c-EEEEEcc---------CCCCCceeEeCCCCCEEEEEc
Q psy16005 84 IWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-G-AKVSSLP---------IDYEPSSISLDHEHGLVAVGG 152 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~-~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~ 152 (248)
+|+..+++.. ..+. +...+.++.|+|+++.++..... . ..+|+.. ....+..+.+++++..++++.
T Consensus 100 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (301)
T d1l0qa2 100 VIDTTSNTVA--GTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN 176 (301)
T ss_dssp EEETTTTEEE--EEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred ecccccceee--eecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeec
Confidence 9999988754 3333 34567899999999988776643 3 4666653 345567888999999887776
Q ss_pred CC-CeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEc---CCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 153 AD-SKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGG---ADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 153 ~~-~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
.+ +.+.+++ ..+..........+..+++++++..++++. .++.|++||+.+++....+. +...+.+++|+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spd 254 (301)
T d1l0qa2 177 FDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGIAVTPD 254 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEEEECTT
T ss_pred ccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCC
Confidence 55 5566666 334455556666778899999999877654 34689999999988755443 4456899999999
Q ss_pred CcEE-EEEcCCCeEEEEECCCCC
Q psy16005 227 NEYL-VASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 227 ~~~l-~~~~~d~~i~vw~~~~~~ 248 (248)
|++| ++++.|+.|++||+++++
T Consensus 255 g~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 255 GKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEECCCCeEEEEECCCCe
Confidence 9987 567789999999998874
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=6.3e-25 Score=165.70 Aligned_cols=220 Identities=13% Similarity=0.128 Sum_probs=150.8
Q ss_pred EEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeecc
Q psy16005 23 LGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 23 ~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~ 99 (248)
++|++++++|++++ ++.|.+||+.+++.+..+. .+...+.+++|+|||+++ +++..++.|.+||+.+++........
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 47899999999987 8999999999999988876 455678899999999987 55668899999999998765433322
Q ss_pred CC----CCCeeEEEEecCCCEEEEEeC-------------CcEEEEEccCCC------------CCceeEeCCCCCEEEE
Q psy16005 100 PI----GGPIKDIAWSPDNQRMISIVE-------------NGAKVSSLPIDY------------EPSSISLDHEHGLVAV 150 (248)
Q Consensus 100 ~~----~~~v~~~~~~~~~~~l~~~~~-------------~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~ 150 (248)
.. ...+..++|+|||++++++.. ..+.+|+..... ....+.+++++.+++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 11 124668999999999987752 224556553221 1222333344433332
Q ss_pred EcCCCeEEEEE--CCceeeee-----------------------------------------------------------
Q psy16005 151 GGADSKISIVE--NGAKVSSL----------------------------------------------------------- 169 (248)
Q Consensus 151 ~~~~~~i~~~~--~~~~~~~~----------------------------------------------------------- 169 (248)
+ +.+.+|+ .++.+..+
T Consensus 162 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
T d1jmxb_ 162 G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238 (346)
T ss_dssp S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred C---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence 1 1122222 11111111
Q ss_pred ----------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 170 ----------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 170 ----------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
.....+..+.+++++.+++... ++.|.+||..+++...... +...+.+++|+|||++|++++.|+.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~~d~~v 315 (346)
T d1jmxb_ 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDL 315 (346)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred CCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc--CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence 1122234556677777666655 4579999999998765554 44568999999999999999999999
Q ss_pred EEEECCCCC
Q psy16005 240 VLYRVPDFE 248 (248)
Q Consensus 240 ~vw~~~~~~ 248 (248)
++||++++|
T Consensus 316 ~v~D~~t~~ 324 (346)
T d1jmxb_ 316 AVFNPDTLE 324 (346)
T ss_dssp EEEETTTTE
T ss_pred EEEECccCC
Confidence 999999875
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=3.8e-24 Score=160.78 Aligned_cols=213 Identities=13% Similarity=0.124 Sum_probs=156.4
Q ss_pred CEEEEeC-CcEEEEEecCCCceeeeeecC--CcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccC---CC
Q psy16005 30 KNFLYTN-GNSVIIRNIENPAISDIYTEH--SCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHP---IG 102 (248)
Q Consensus 30 ~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~ 102 (248)
+++++++ |++|++||+.+++.+..+..+ ...+.+++|+|||+++ ++++.++.|.+||+.+++.+....... +.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 4677776 899999999999998888643 4557899999999987 567789999999999998664333321 12
Q ss_pred CCeeEEEEecCCCEEEEEeCC-------------cEEEEEcc---------CCCCCceeEeCCCCCEEEEEcCCCeEEEE
Q psy16005 103 GPIKDIAWSPDNQRMISIVEN-------------GAKVSSLP---------IDYEPSSISLDHEHGLVAVGGADSKISIV 160 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~~-------------~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (248)
..+..++|+|++++++++..+ ...+|+.. ....+..+.++|+++++++++.+ +.+|
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~ 159 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVM 159 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--ccee
Confidence 345679999999999887532 23455543 45667889999999999888755 4455
Q ss_pred E--CCceeeeec-------------------------------------------------------------------c
Q psy16005 161 E--NGAKVSSLP-------------------------------------------------------------------I 171 (248)
Q Consensus 161 ~--~~~~~~~~~-------------------------------------------------------------------~ 171 (248)
| .++....+. .
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (337)
T d1pbyb_ 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence 5 222221111 0
Q ss_pred cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 172 DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 172 ~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
...+..++++|++.+++.+ ++.|++||+.+++.+.... +...+.+++|+|||++|++++.|+.|++||++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 1112345566777776655 4789999999998866553 55678999999999999999999999999999875
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4.4e-25 Score=165.64 Aligned_cols=228 Identities=10% Similarity=0.078 Sum_probs=163.6
Q ss_pred cccCCcEEEEeCCCCC-EEEEeC-CcEEEEEecCCCceeeeeecCCc-ceEEEEECcCCcEEEEEccCCeEEEEECCCCc
Q psy16005 15 TQRGQPIVLGGDPKGK-NFLYTN-GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSPSGFYIASGDISGKVRIWDTVNKE 91 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 91 (248)
.|.++|.+++|+|++. +|++|+ |+.|++|++...........+.. ......+.++...+++++.++.+++||++.+.
T Consensus 54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence 4889999999998754 677775 99999999988776665554433 34455566788899999999999999986544
Q ss_pred eeeee--ecc--CCCCCeeEEEEecCCCEEEEEeCCc-EEEEEccCCCCC-------------ceeE-eCCCCCEEEEEc
Q psy16005 92 HILKN--EFH--PIGGPIKDIAWSPDNQRMISIVENG-AKVSSLPIDYEP-------------SSIS-LDHEHGLVAVGG 152 (248)
Q Consensus 92 ~~~~~--~~~--~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~~~~~~-------------~~~~-~~~~~~~~~~~~ 152 (248)
..... ... ........+.+.+++..+++++.++ +++|++...... .... +..++..+++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 213 (342)
T d1yfqa_ 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred cceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec
Confidence 32111 111 1233455677888899999988777 599998644322 2223 334667899999
Q ss_pred CCCeEEEEECCce--------eee----------ecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC
Q psy16005 153 ADSKISIVENGAK--------VSS----------LPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH 214 (248)
Q Consensus 153 ~~~~i~~~~~~~~--------~~~----------~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 214 (248)
.|+.+.+|+.... ... ..+...+++++|+|++++|++|+.||.|++||+++++.+..+...
T Consensus 214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~- 292 (342)
T d1yfqa_ 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF- 292 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-
T ss_pred CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-
Confidence 9999999972111 000 012334678999999999999999999999999998876555422
Q ss_pred CcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 215 LGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 215 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
..+..++|+|+++++++++.|+.+++|..
T Consensus 293 -~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 293 -NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred -CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 34566788899999999988876665543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=3.8e-24 Score=166.71 Aligned_cols=240 Identities=11% Similarity=0.001 Sum_probs=154.5
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCcee--eee---ecCCcceEEEEECcCCcEE-EEEccC
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAIS--DIY---TEHSCAVNVAKYSPSGFYI-ASGDIS 79 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~--~~~---~~~~~~v~~~~~s~~~~~l-~~~~~d 79 (248)
+++..++.+ ..+..++|||||+++++++ |+.+++||+.+++.. ..+ ..|.+.+.+..|+|||++| ++++.+
T Consensus 53 ~v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~ 130 (432)
T d1qksa2 53 EIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP 130 (432)
T ss_dssp CEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred cEEEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC
Confidence 455566543 3589999999999999886 899999999887643 222 2455667777888999976 678889
Q ss_pred CeEEEEECCCCceeeeeec---------cCCCCCeeEEEEecCCCEEEEEeCC--cEEEE-----------EccCCCCCc
Q psy16005 80 GKVRIWDTVNKEHILKNEF---------HPIGGPIKDIAWSPDNQRMISIVEN--GAKVS-----------SLPIDYEPS 137 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~~--~~~i~-----------~~~~~~~~~ 137 (248)
+.|++||..+++.+..... ..+......+.++|+++.++....+ .+.+| .+.....+.
T Consensus 131 ~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~ 210 (432)
T d1qksa2 131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210 (432)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc
Confidence 9999999999886533221 1234566778999999887766532 23444 444556677
Q ss_pred eeEeCCCCCEEEEEcC-CCeEEEEEC--Cceeeeecc-------------------------------------------
Q psy16005 138 SISLDHEHGLVAVGGA-DSKISIVEN--GAKVSSLPI------------------------------------------- 171 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~-~~~i~~~~~--~~~~~~~~~------------------------------------------- 171 (248)
.+.++|+++++++++. ++.+.+++. ++....+..
T Consensus 211 ~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~ 290 (432)
T d1qksa2 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290 (432)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred cceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccc
Confidence 8999999997776654 445666652 111111100
Q ss_pred --cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC------------------------C-------cccccCCcCe
Q psy16005 172 --DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS------------------------P-------KAELDHLGPV 218 (248)
Q Consensus 172 --~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~------------------------~-------~~~~~~~~~v 218 (248)
...+....++|++..+++++.++..++|+..+.... . .....|...+
T Consensus 291 ~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v 370 (432)
T d1qksa2 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 370 (432)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred ccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcE
Confidence 001222344555555555555555555543221100 0 0111456678
Q ss_pred EEEEEcCCCcEEEEEc-----CCCeEEEEECCCCC
Q psy16005 219 TDCSFSPSNEYLVASD-----AHRKVVLYRVPDFE 248 (248)
Q Consensus 219 ~~~~~s~~~~~l~~~~-----~d~~i~vw~~~~~~ 248 (248)
.+++|||||++++.+. .+|.|+|||.+|+|
T Consensus 371 ~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 371 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 9999999999886553 46899999998874
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.4e-22 Score=148.83 Aligned_cols=186 Identities=16% Similarity=0.222 Sum_probs=114.6
Q ss_pred eeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEE
Q psy16005 51 SDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSS 129 (248)
Q Consensus 51 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~ 129 (248)
+.....|...|+|++| |+++||+|+.||+|+|||+.+++.+ ..+.+|...|.+++| ++++|++++.++ +++|+
T Consensus 8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~--~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 81 (293)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEE--EEEecCCCCEeeeec--ccceeecccccccccccc
Confidence 3344577888998765 7899999999999999999998854 677889999999887 678999999877 58998
Q ss_pred ccCCC--------CCceeEeCCCCCEEEEEcCCCeEEEEE----------------------------------------
Q psy16005 130 LPIDY--------EPSSISLDHEHGLVAVGGADSKISIVE---------------------------------------- 161 (248)
Q Consensus 130 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~---------------------------------------- 161 (248)
+.... ........+....++++..++.+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~ 161 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred cccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCcee
Confidence 75432 122223334444555556666666665
Q ss_pred ---CCceeeeecccCC-CceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCC
Q psy16005 162 ---NGAKVSSLPIDYE-PSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHR 237 (248)
Q Consensus 162 ---~~~~~~~~~~~~~-~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 237 (248)
............. .....+++++.++++++.|+.|++||+++.+.+.... +|...+.. +++++.+|++++.||
T Consensus 162 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~--~~~~~~~l~sg~~dg 238 (293)
T d1p22a2 162 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRC--IRFDNKRIVSGAYDG 238 (293)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEE--EECCSSEEEEEETTS
T ss_pred eecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeec-ccceeeee--ccccceEEEEEcCCC
Confidence 2222211111111 1222344455556666666666666665555443322 44444432 345566666666666
Q ss_pred eEEEEECC
Q psy16005 238 KVVLYRVP 245 (248)
Q Consensus 238 ~i~vw~~~ 245 (248)
.|++||+.
T Consensus 239 ~i~iwd~~ 246 (293)
T d1p22a2 239 KIKVWDLV 246 (293)
T ss_dssp CEEEEEHH
T ss_pred EEEEEECC
Confidence 66666553
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=2.3e-23 Score=157.96 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=142.3
Q ss_pred EEEECc-CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-c--EEEEEccC------
Q psy16005 63 VAKYSP-SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-G--AKVSSLPI------ 132 (248)
Q Consensus 63 ~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~~i~~~~~------ 132 (248)
.-.||| ||+++|+++ +|.|++||+.++... .+ .|...|.+++|+|||+.|++++.+ + +.+|++..
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~---~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~ 81 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF 81 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEE---Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence 457999 999999976 479999999887643 23 588999999999999999877644 3 57888753
Q ss_pred ---CCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec-ccCCCceEEEcCCCCEEEEEc----------CCCcE
Q psy16005 133 ---DYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-IDYEPSSISLDHEHGLVAVGG----------ADSKV 196 (248)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~----------~d~~v 196 (248)
...+..++|+|+++++++++.++.+++|+ .++....+. +...+.+++|+|||++|+.+. .++.+
T Consensus 82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence 34567899999999999999999999999 444444443 455678999999999998653 34569
Q ss_pred EEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCC
Q psy16005 197 HIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPD 246 (248)
Q Consensus 197 ~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 246 (248)
++||+.+++..... .+...+..++|+|||++|++++.++.+.+|+...
T Consensus 162 ~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 162 HVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp EEEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred eeeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence 99999987664322 4667789999999999999999999999998754
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=1.6e-22 Score=157.51 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=133.9
Q ss_pred eCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeecc---C
Q psy16005 25 GDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH---P 100 (248)
Q Consensus 25 ~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~ 100 (248)
.+++.-++++.+ ++.|.+||..+++.+..+..+ ..+..++|||||+++++++.||.|++||+.+++......++ .
T Consensus 28 ~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 28 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred CCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence 343433345555 899999999999999999876 46899999999999999999999999999887643323322 2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeec--------
Q psy16005 101 IGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLP-------- 170 (248)
Q Consensus 101 ~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~-------- 170 (248)
|.+.+.+..|+|||++|++ ++..++.+++|| .++.+..+.
T Consensus 107 ~~~~~~s~~~SpDG~~l~v------------------------------s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~ 156 (432)
T d1qksa2 107 ARSIETSKMEGWEDKYAIA------------------------------GAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 156 (432)
T ss_dssp EEEEEECCSTTCTTTEEEE------------------------------EEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred CCCeEEecccCCCCCEEEE------------------------------EcCCCCeEEEEeCccccceeeeccCCccccc
Confidence 3334444455666665533 334455555555 333333222
Q ss_pred ----ccCCCceEEEcCCCCEEE-EEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC-CCeEEEEEC
Q psy16005 171 ----IDYEPSSISLDHEHGLVA-VGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA-HRKVVLYRV 244 (248)
Q Consensus 171 ----~~~~~~~~~~s~~~~~l~-~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~ 244 (248)
.......+.++|++..++ +...++.|.+||..+.+........+...+..++|+|||+++++++. ++.+.+++.
T Consensus 157 ~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeec
Confidence 223345678899998654 55667999999998877544444456677899999999998877754 578888888
Q ss_pred CCC
Q psy16005 245 PDF 247 (248)
Q Consensus 245 ~~~ 247 (248)
.++
T Consensus 237 ~~~ 239 (432)
T d1qksa2 237 KEG 239 (432)
T ss_dssp TTT
T ss_pred ccc
Confidence 764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.6e-21 Score=145.12 Aligned_cols=230 Identities=11% Similarity=0.096 Sum_probs=161.0
Q ss_pred cccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeee---cCCcceEEEEECcCCcEEEEEcc-CCeEEEEECC
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYT---EHSCAVNVAKYSPSGFYIASGDI-SGKVRIWDTV 88 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 88 (248)
.+.+.+..++|||||++|++++ ++.|++|++........+. .+...+..++|+|||++|++++. ++.|.+|+..
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence 3567899999999999996654 8999999987654332222 34455778999999999988875 6789999988
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc--EEEEEcc----------------CCCCCceeEeCCCCCEEEE
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG--AKVSSLP----------------IDYEPSSISLDHEHGLVAV 150 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~----------------~~~~~~~~~~~~~~~~~~~ 150 (248)
............+...+.++.++|++++++.++... +.+|+.. ....+..+.+++++..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~ 193 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 193 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence 776554455556677889999999999998887544 4555542 2234567889998887765
Q ss_pred E-cCCCeEEEEECC---ce---eeeec-------ccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCccc--cc
Q psy16005 151 G-GADSKISIVENG---AK---VSSLP-------IDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAE--LD 213 (248)
Q Consensus 151 ~-~~~~~i~~~~~~---~~---~~~~~-------~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~--~~ 213 (248)
. ...+...+++.. .. ..... ....+..++++++++++++. ..++.+.+|++.......... ..
T Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (333)
T d1ri6a_ 194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 273 (333)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC
Confidence 4 455667777621 11 11111 12234567899999966654 567889999987665433222 12
Q ss_pred CCcCeEEEEEcCCCcEEEEEc-CCCeEEEEEC
Q psy16005 214 HLGPVTDCSFSPSNEYLVASD-AHRKVVLYRV 244 (248)
Q Consensus 214 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~ 244 (248)
....+..++|+|||++|++++ .++.|.+|++
T Consensus 274 ~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp CSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 445678999999999987775 4689999954
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=1.8e-22 Score=157.06 Aligned_cols=216 Identities=10% Similarity=0.037 Sum_probs=146.2
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeee--e---ecCCcceEEEEECcCCcEEEE-EccC
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDI--Y---TEHSCAVNVAKYSPSGFYIAS-GDIS 79 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~--~---~~~~~~v~~~~~s~~~~~l~~-~~~d 79 (248)
+++..++.+ ..+..++|||||+++++++ |+.+++||+.+++.... + .+|.+.+.+++|+|||+++++ +..+
T Consensus 53 ~~~~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~ 130 (426)
T d1hzua2 53 KIVKVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP 130 (426)
T ss_dssp SEEEEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred cEEEEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC
Confidence 345556543 3589999999999999887 89999999998875432 2 256666778888999998755 4578
Q ss_pred CeEEEEECCCCceeeee-----------------------------------------------------eccCCCCCee
Q psy16005 80 GKVRIWDTVNKEHILKN-----------------------------------------------------EFHPIGGPIK 106 (248)
Q Consensus 80 g~i~iwd~~~~~~~~~~-----------------------------------------------------~~~~~~~~v~ 106 (248)
+.+++||..+++..... ....+...+.
T Consensus 131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence 99999998765432110 0012334456
Q ss_pred EEEEecCCCEEEEEeCCc--EEEEEcc-----------------------------------------------------
Q psy16005 107 DIAWSPDNQRMISIVENG--AKVSSLP----------------------------------------------------- 131 (248)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~--~~i~~~~----------------------------------------------------- 131 (248)
.+.|+|++++++++..+. +.+++..
T Consensus 211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~ 290 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 290 (426)
T ss_dssp EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence 788888888887775332 2222210
Q ss_pred -----------CCCCCceeEeCCCCCEEEE-------EcCCCeEEEEE--CCceeeee----------cccCCCceEEEc
Q psy16005 132 -----------IDYEPSSISLDHEHGLVAV-------GGADSKISIVE--NGAKVSSL----------PIDYEPSSISLD 181 (248)
Q Consensus 132 -----------~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~--~~~~~~~~----------~~~~~~~~~~~s 181 (248)
+...+..++++|+++++++ +..+++|++|| +++...++ .+...+..++||
T Consensus 291 ~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS 370 (426)
T d1hzua2 291 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 370 (426)
T ss_dssp TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC
T ss_pred ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEEC
Confidence 1234677899999999995 44578999999 44444332 123346778999
Q ss_pred CCCCEEEEE-----cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEE
Q psy16005 182 HEHGLVAVG-----GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLV 231 (248)
Q Consensus 182 ~~~~~l~~~-----~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 231 (248)
|||++++++ +.++.|+|||.++.+....+. ++. .++|+|+|-+
T Consensus 371 pDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~-~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 371 KRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK-DPR------LITPTGKFNV 418 (426)
T ss_dssp SSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC-CTT------CCSEEEEEEH
T ss_pred CCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC-CCC------ccCCCceEeE
Confidence 999977543 357889999999998754443 332 3467777643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=5.6e-21 Score=143.26 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=148.9
Q ss_pred ceecccccccc-cCCcEEEEeCCCCCEEEE-eC-CcEEEEEecCCCceeeeeecCCc-----ceEEEEECcCCcEEEEEc
Q psy16005 6 KYIFATLPRTQ-RGQPIVLGGDPKGKNFLY-TN-GNSVIIRNIENPAISDIYTEHSC-----AVNVAKYSPSGFYIASGD 77 (248)
Q Consensus 6 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~-~~-~~~v~v~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~ 77 (248)
.+++..++... ...+.+++|+|||+++++ ++ ++.|.+||+.+++.+..+..+.. .+..++|+|++++++++.
T Consensus 21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 100 (337)
T d1pbyb_ 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEee
Confidence 34555565433 355789999999998754 44 89999999999998887765432 345789999999998875
Q ss_pred ------------cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC-------------
Q psy16005 78 ------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI------------- 132 (248)
Q Consensus 78 ------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~------------- 132 (248)
.+..+.+||..+++... .+. +...+..++|+|||+++++++.+ ..+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~-~~~~~~~~~~s~dg~~l~~~~~~-~~~~d~~~~~~~~~~~~~~~~ 176 (337)
T d1pbyb_ 101 SPVRLELTHFEVQPTRVALYDAETLSRRK--AFE-APRQITMLAWARDGSKLYGLGRD-LHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEE--EEE-CCSSCCCEEECTTSSCEEEESSS-EEEEETTTTEEEEEECSTTTT
T ss_pred cCCcceeeeccccccceeeccccCCeEEE--ecc-ccCCceEEEEcCCCCEEEEEcCC-cceeeeecCcEEEEeecCCcc
Confidence 35688999999887543 333 34568889999999999987644 34444310
Q ss_pred ---------------------------------------------------------------CCCCceeEeCCCCCEEE
Q psy16005 133 ---------------------------------------------------------------DYEPSSISLDHEHGLVA 149 (248)
Q Consensus 133 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 149 (248)
......+.+++++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE
Confidence 01122334556666665
Q ss_pred EEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc
Q psy16005 150 VGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 150 ~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
.+ ++.+++|| .++.+..+.....+.+++|+|||++|++++.++.|++||.++.+.+..+.
T Consensus 257 ~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 257 GA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred Ec--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 54 47899999 66777888888889999999999999999999999999999988765554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=4.9e-20 Score=136.06 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=157.5
Q ss_pred CCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEE-EEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCC
Q psy16005 36 NGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYI-ASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDN 114 (248)
Q Consensus 36 ~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 114 (248)
.++.|.+||+.+++.++.+... ..+..++|+|||++| ++++.++.|++||+.+++.+ ..+..+ ..+..++|++++
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--~~~~~~-~~~~~~~~~~~~ 85 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVPAG-SSPQGVAVSPDG 85 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEECS-SSEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee--eeeecc-cccccccccccc
Confidence 4899999999999999888643 557899999999987 56778899999999998865 344443 457899999999
Q ss_pred CEEEEEeCCc--EEEEEcc---------CCCCCceeEeCCCCCEEE-EEcCCCeEEEEE--CCceeeeecccCCCceEEE
Q psy16005 115 QRMISIVENG--AKVSSLP---------IDYEPSSISLDHEHGLVA-VGGADSKISIVE--NGAKVSSLPIDYEPSSISL 180 (248)
Q Consensus 115 ~~l~~~~~~~--~~i~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~ 180 (248)
+.+++.+.+. ..+|+.. ....+..+.++|+++.++ ++..++.+.+|+ .......+.....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (301)
T d1l0qa2 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAV 165 (301)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEE
T ss_pred ccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEe
Confidence 9887776443 3666653 345567889999998765 555678889998 5556666777777899999
Q ss_pred cCCCCEEEEEcCC-CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEc---CCCeEEEEECCCCC
Q psy16005 181 DHEHGLVAVGGAD-SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASD---AHRKVVLYRVPDFE 248 (248)
Q Consensus 181 s~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~~~~~~ 248 (248)
+|++..+++++.+ +.+.+|+....+..... .....+..++|+++++.++.++ .++.|++||+.+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~ 235 (301)
T d1l0qa2 166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred eccccceeeecccccccccccccceeeeecc--cccCCcceeeccccccccccccccceeeeeeeeecCCCe
Confidence 9999988877765 56777777666553333 3445678899999999887653 34789999998764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=6.3e-21 Score=144.37 Aligned_cols=225 Identities=12% Similarity=0.079 Sum_probs=155.9
Q ss_pred cEEEEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------cCCeEE
Q psy16005 20 PIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------ISGKVR 83 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~ 83 (248)
+...+.+|||+.+++.. .+.+++||..+++.+..+..+..+ .++|||||++|++.+ .++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 33446789999987752 458999999999998888765444 799999999887643 478999
Q ss_pred EEECCCCceeeeeeccC-----CCCCeeEEEEecCCCEEEEEeCC---cEEEEEccCC----------------------
Q psy16005 84 IWDTVNKEHILKNEFHP-----IGGPIKDIAWSPDNQRMISIVEN---GAKVSSLPID---------------------- 133 (248)
Q Consensus 84 iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~---~~~i~~~~~~---------------------- 133 (248)
+||..+++......... .......++|+|++++++..... ...+|+....
T Consensus 82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF 161 (355)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence 99999988654333221 12234668999999988877532 2345543210
Q ss_pred ---------------------------------CCCceeEeCCCCCEEEEEcCCCeEEEEECC-ceeeeec---------
Q psy16005 134 ---------------------------------YEPSSISLDHEHGLVAVGGADSKISIVENG-AKVSSLP--------- 170 (248)
Q Consensus 134 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~--------- 170 (248)
.......+.+++..++.++.++.+++|+.. .....+.
T Consensus 162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (355)
T d2bbkh_ 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241 (355)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccce
Confidence 011233455566677788888999999822 2111111
Q ss_pred -----ccCCCceEEEcCCCCEEEEEcCC----------CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc--EEEEE
Q psy16005 171 -----IDYEPSSISLDHEHGLVAVGGAD----------SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE--YLVAS 233 (248)
Q Consensus 171 -----~~~~~~~~~~s~~~~~l~~~~~d----------~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~ 233 (248)
.......++++|++..++....+ ..|.+||..+++.+..+. +...+.+++|+|||+ +++++
T Consensus 242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~l~v~~ 319 (355)
T d2bbkh_ 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKPLLYALS 319 (355)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSCEEEEEE
T ss_pred EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcCCCCeEEEEEE
Confidence 01223568899999988776533 369999999998765554 445689999999998 34567
Q ss_pred cCCCeEEEEECCCCC
Q psy16005 234 DAHRKVVLYRVPDFE 248 (248)
Q Consensus 234 ~~d~~i~vw~~~~~~ 248 (248)
+.|+.|++||+++++
T Consensus 320 ~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 320 TGDKTLYIHDAESGE 334 (355)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCEEEEEECCCCC
Confidence 789999999999886
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.88 E-value=6.1e-20 Score=139.91 Aligned_cols=230 Identities=12% Similarity=-0.013 Sum_probs=156.6
Q ss_pred cccCCcEEEEeCCCCCEEEEeC------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc----------c
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD----------I 78 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~ 78 (248)
.+.+++.+++++|||+.++... .+.+++||..+++.+..+..+..+ .++|+|||++|++++ .
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence 4678899999999999988752 367999999999999888765543 799999999998874 4
Q ss_pred CCeEEEEECCCCceeeeeeccCC-----CCCeeEEEEecCCCEEEEEeCC---cEEEEEccC------CCCCceeEeCCC
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMISIVEN---GAKVSSLPI------DYEPSSISLDHE 144 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~---~~~i~~~~~------~~~~~~~~~~~~ 144 (248)
++.|.+||..+++.......... ......+.|+++++.++....+ ...+|+... ...+.++.++|+
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 175 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPG 175 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecC
Confidence 57899999999886533322211 1123567888998877666532 245666432 233556677777
Q ss_pred CCE-EEEEcCCCeEEEEEC--Cceeeeec-----------------------------------------------c---
Q psy16005 145 HGL-VAVGGADSKISIVEN--GAKVSSLP-----------------------------------------------I--- 171 (248)
Q Consensus 145 ~~~-~~~~~~~~~i~~~~~--~~~~~~~~-----------------------------------------------~--- 171 (248)
++. +++.+.|+.+.+|+. +....... .
T Consensus 176 g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 255 (373)
T d2madh_ 176 APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccc
Confidence 764 356677777777761 11110000 0
Q ss_pred ----------cCCCceEEEcCCCCEEE----------EEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcE--
Q psy16005 172 ----------DYEPSSISLDHEHGLVA----------VGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEY-- 229 (248)
Q Consensus 172 ----------~~~~~~~~~s~~~~~l~----------~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-- 229 (248)
......++++|++..++ ....++.+.+||..+++....+ .+...+..++|+|||+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~--~~~~~~~~~a~spDG~~~l 333 (373)
T d2madh_ 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI--SLGHDVDAISVAQDGGPDL 333 (373)
T ss_pred cCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe--cCCCCeeEEEECCCCCEEE
Confidence 00012245555555443 3344567899999988876544 45667899999999984
Q ss_pred EEEEcCCCeEEEEECCCCC
Q psy16005 230 LVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 230 l~~~~~d~~i~vw~~~~~~ 248 (248)
+++++.|+.|++||+.++|
T Consensus 334 ~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 334 YALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEeCCCCeEEEEECCCCC
Confidence 4678899999999999986
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=3.5e-18 Score=128.24 Aligned_cols=203 Identities=7% Similarity=0.013 Sum_probs=137.1
Q ss_pred ceecccccccccCCcEEEEeCCCCCEEEEe-C-CcEEEEEecCCCceeeeeecCC------cceEEEEECcCCcEEEEEc
Q psy16005 6 KYIFATLPRTQRGQPIVLGGDPKGKNFLYT-N-GNSVIIRNIENPAISDIYTEHS------CAVNVAKYSPSGFYIASGD 77 (248)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~-~~~v~v~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~ 77 (248)
.+++..++..+...+.+++|+|||++++++ . ++.|++||+.+++....+.... ..+..++|+|||+++++++
T Consensus 28 ~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 28 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence 345555555556678899999999988655 3 8999999999998877664322 2356789999999988765
Q ss_pred ------------cCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEc---------------
Q psy16005 78 ------------ISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSL--------------- 130 (248)
Q Consensus 78 ------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~--------------- 130 (248)
.++.+.+|+..+++.............+..+.++++++.++.. ....+|+.
T Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 185 (346)
T d1jmxb_ 108 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWN 185 (346)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCC
T ss_pred cCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecCCCc
Confidence 4678999998876643222222223344445555555444332 11222221
Q ss_pred ----------------------------------------------------cC-----------CCCCceeEeCCCCCE
Q psy16005 131 ----------------------------------------------------PI-----------DYEPSSISLDHEHGL 147 (248)
Q Consensus 131 ----------------------------------------------------~~-----------~~~~~~~~~~~~~~~ 147 (248)
.. ........+++++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (346)
T d1jmxb_ 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265 (346)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT
T ss_pred cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCE
Confidence 10 111223445555555
Q ss_pred EEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE 211 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 211 (248)
++... ++.+.+|| .++.+..+.....+.+++|+|||++|++++.|+.|++||+++++.+....
T Consensus 266 ~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 266 QIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp EEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 55443 35789999 66777777777889999999999999999999999999999998776554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.6e-16 Score=118.67 Aligned_cols=211 Identities=13% Similarity=0.149 Sum_probs=143.3
Q ss_pred CCcEEEEEecCCCceeeee--ecCCcceEEEEECcCCcEEEEE-ccCCeEEEEECCCCceeeee-eccCCCCCeeEEEEe
Q psy16005 36 NGNSVIIRNIENPAISDIY--TEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKN-EFHPIGGPIKDIAWS 111 (248)
Q Consensus 36 ~~~~v~v~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~ 111 (248)
.++.|++|+++.......+ ..|.+.+..++|+|||++|+++ ..|+.|++|++......... ....+...+..++|+
T Consensus 12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s 91 (333)
T d1ri6a_ 12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD 91 (333)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc
Confidence 3899999998765433322 3678899999999999998554 55899999999866433222 122344567889999
Q ss_pred cCCCEEEEEeCCc--EEEEEcc------------CCCCCceeEeCCCCCEEEEEc-CCCeEEEEECCc---eee------
Q psy16005 112 PDNQRMISIVENG--AKVSSLP------------IDYEPSSISLDHEHGLVAVGG-ADSKISIVENGA---KVS------ 167 (248)
Q Consensus 112 ~~~~~l~~~~~~~--~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~---~~~------ 167 (248)
|||++|++++.+. +.+|... ....+..+.++|+++.++.+. .+..+.+|+... ...
T Consensus 92 pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (333)
T d1ri6a_ 92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV 171 (333)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee
Confidence 9999999997544 3555432 234567889999999877665 456788888221 111
Q ss_pred eecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCcc---------cccCCcCeEEEEEcCCCcEEEEE-cCC
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKA---------ELDHLGPVTDCSFSPSNEYLVAS-DAH 236 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~-~~d 236 (248)
.......+..+++++++.+++... ..+...+++.......... ..........+++++++++++.. ..+
T Consensus 172 ~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~ 251 (333)
T d1ri6a_ 172 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 251 (333)
T ss_dssp ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC
Confidence 112234467899999999776654 4567888887554322111 01233456788999999977655 567
Q ss_pred CeEEEEECCC
Q psy16005 237 RKVVLYRVPD 246 (248)
Q Consensus 237 ~~i~vw~~~~ 246 (248)
+.+.+|++..
T Consensus 252 ~~~~~~~~~~ 261 (333)
T d1ri6a_ 252 SLITVFSVSE 261 (333)
T ss_dssp TEEEEEEECT
T ss_pred CeEEEEEEcC
Confidence 8999998754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=5.9e-18 Score=128.80 Aligned_cols=223 Identities=7% Similarity=-0.094 Sum_probs=145.0
Q ss_pred EEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecCCc-------ceEEEEECcCCcEEEEEc-cCCeE
Q psy16005 22 VLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEHSC-------AVNVAKYSPSGFYIASGD-ISGKV 82 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~-~dg~i 82 (248)
.++|+|||+.+++.+ ++.|.+||..+++....+..+.. ....++|+|||++|+++. .++.+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 589999999988753 46799999999998877654322 234689999999998775 57999
Q ss_pred EEEECCCCceeeeeeccCC-----CCCeeEEEEecCCCEEEEEeCCcE-EEEEcc------CCCCCceeEeCCCCCEEEE
Q psy16005 83 RIWDTVNKEHILKNEFHPI-----GGPIKDIAWSPDNQRMISIVENGA-KVSSLP------IDYEPSSISLDHEHGLVAV 150 (248)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~-~i~~~~------~~~~~~~~~~~~~~~~~~~ 150 (248)
.+||+.+++.......... ......+.+++||+.++....+.. ..+... ....+....+.+++..+..
T Consensus 149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 9999999886544333221 123344566777776666544332 222211 1223345566666665554
Q ss_pred EcCCCeEEEEE--CCceeeeec-------------ccCCCceEEEcCCCCEEEEEcCC---------CcEEEEEcCCCCC
Q psy16005 151 GGADSKISIVE--NGAKVSSLP-------------IDYEPSSISLDHEHGLVAVGGAD---------SKVHIYELNNKSL 206 (248)
Q Consensus 151 ~~~~~~i~~~~--~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~~~~d---------~~v~i~d~~~~~~ 206 (248)
.. +.+++++ .+....... .......++++|++..+++...+ ..|.+||..+++.
T Consensus 229 ~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~ 306 (368)
T d1mdah_ 229 VA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp BS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred cC--CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE
Confidence 43 3344444 222211111 11224568899999877665322 3599999999987
Q ss_pred CCcccccCCcCeEEEEEcCCCcE--EEEEcCCCeEEEEECCCCC
Q psy16005 207 SPKAELDHLGPVTDCSFSPSNEY--LVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 207 ~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~d~~i~vw~~~~~~ 248 (248)
+..+. +...+.+++|+|||+. ++++..++.|++||..++|
T Consensus 307 ~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 307 SGPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred eEEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 65554 4457899999999973 4566778999999998875
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=8.9e-17 Score=121.23 Aligned_cols=207 Identities=9% Similarity=-0.015 Sum_probs=137.0
Q ss_pred CcEEEEeCCCCCEEEEeC-----------CcEEEEEecCCCceeeeeecCCc-------ceEEEEECcCCcEEEEEc--c
Q psy16005 19 QPIVLGGDPKGKNFLYTN-----------GNSVIIRNIENPAISDIYTEHSC-------AVNVAKYSPSGFYIASGD--I 78 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~--~ 78 (248)
....++|||||++|++++ ++.|++||+.+++....+..+.. ....++|+|++++++.++ .
T Consensus 48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~ 127 (355)
T d2bbkh_ 48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 127 (355)
T ss_dssp SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence 344789999999887643 57899999999988876653322 234678999999887764 4
Q ss_pred CCeEEEEECCCCceeeeeeccCC-----CCCeeEEEEec--------------------------------------CCC
Q psy16005 79 SGKVRIWDTVNKEHILKNEFHPI-----GGPIKDIAWSP--------------------------------------DNQ 115 (248)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~--------------------------------------~~~ 115 (248)
+..+.+|+..+++.......... ......+.+++ ++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 207 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCC
Confidence 57899999988764322111100 01112233344 444
Q ss_pred EEEEEeCCc-EEEEEccCC----------------------CCCceeEeCCCCCEEEEEcCC----------CeEEEEE-
Q psy16005 116 RMISIVENG-AKVSSLPID----------------------YEPSSISLDHEHGLVAVGGAD----------SKISIVE- 161 (248)
Q Consensus 116 ~l~~~~~~~-~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~- 161 (248)
.++.++.++ +.+|++... .....+++++++..++....+ ..|.+||
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~ 287 (355)
T d2bbkh_ 208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 287 (355)
T ss_dssp EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence 444444333 356665322 123457788888877765433 3688999
Q ss_pred -CCceeeeecccCCCceEEEcCCCC--EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 162 -NGAKVSSLPIDYEPSSISLDHEHG--LVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 162 -~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
.++.+..++....+.+++|+|||+ +++++..|+.|++||+++++.+..+. .+......+.+.++
T Consensus 288 ~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~-~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 288 KTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN-QLGHGPQVITTADM 354 (355)
T ss_dssp TTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC-CCCSSCCEEECCCC
T ss_pred CCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe-CcCCCccEEEeCCC
Confidence 567777777777789999999998 45667789999999999999876554 34444555555544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.74 E-value=2.5e-16 Score=123.48 Aligned_cols=105 Identities=12% Similarity=0.049 Sum_probs=80.8
Q ss_pred cccCCcEEEEeCCCCCEEEEeC----------CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEE
Q psy16005 15 TQRGQPIVLGGDPKGKNFLYTN----------GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRI 84 (248)
Q Consensus 15 ~~~~~v~~~~~s~~~~~l~~~~----------~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 84 (248)
.+...|.++.|||||++|++++ ++.+++||+.+++.. .+..+...+..+.|||||+.+|.. .++.+.+
T Consensus 59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~ 136 (470)
T d2bgra1 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYV 136 (470)
T ss_dssp TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEE
T ss_pred hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccccCCccccccccccCcceeeEe-ecccceE
Confidence 3456799999999999999874 367899999988754 467888999999999999999985 5679999
Q ss_pred EECCCCceeeeeecc----------------CCCCCeeEEEEecCCCEEEEEe
Q psy16005 85 WDTVNKEHILKNEFH----------------PIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 85 wd~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
|+..+++........ ...+....+.|+|||++|+...
T Consensus 137 ~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred EECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 999888653221110 0123345688999999999875
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.68 E-value=1.7e-14 Score=110.14 Aligned_cols=208 Identities=8% Similarity=-0.019 Sum_probs=142.0
Q ss_pred CcEEEEEecCCCceeeeeec------------------------------CCcceEEEEECcCCcEEEEE-ccCCeEEEE
Q psy16005 37 GNSVIIRNIENPAISDIYTE------------------------------HSCAVNVAKYSPSGFYIASG-DISGKVRIW 85 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~------------------------------~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw 85 (248)
+|.|++|++.+++.++.+.- |.........+|||++|++. ..+.+|.++
T Consensus 20 sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavI 99 (441)
T d1qnia2 20 QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARI 99 (441)
T ss_dssp TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEE
T ss_pred CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEE
Confidence 88999999988877665421 22234455567899988655 577899999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCE--EEEEeCCcE---------------------------EEEEccCCCCC
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQR--MISIVENGA---------------------------KVSSLPIDYEP 136 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~~~---------------------------~i~~~~~~~~~ 136 (248)
|+++.+......++ +...+..++|+|+|+. ++..+++.+ ..|.+..+..+
T Consensus 100 Dl~t~k~~~ii~iP-~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p 178 (441)
T d1qnia2 100 RLDIMKTDKITHIP-NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL 178 (441)
T ss_dssp ETTTTEEEEEEECT-TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCC
T ss_pred ECCCCcEeeEEecC-CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCc
Confidence 99998765433333 4577899999999984 444444332 22444456678
Q ss_pred ceeEeCCCCCEEEEEcCCC-----------------------------------------eEEEEE--CCceeeeecccC
Q psy16005 137 SSISLDHEHGLVAVGGADS-----------------------------------------KISIVE--NGAKVSSLPIDY 173 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-----------------------------------------~i~~~~--~~~~~~~~~~~~ 173 (248)
..+.++|+|+++++.+.+. .+.+++ ..+.+..++...
T Consensus 179 ~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk 258 (441)
T d1qnia2 179 DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK 258 (441)
T ss_dssp CCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS
T ss_pred cceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC
Confidence 8999999999888765432 222332 223456667777
Q ss_pred CCceEEEcCCCCEEEE-EcCCCcEEEEEcCCCCCCC-------ccccc---CCcCeEEEEEcCCCcEEEEEcCCCeEEEE
Q psy16005 174 EPSSISLDHEHGLVAV-GGADSKVHIYELNNKSLSP-------KAELD---HLGPVTDCSFSPSNEYLVASDAHRKVVLY 242 (248)
Q Consensus 174 ~~~~~~~s~~~~~l~~-~~~d~~v~i~d~~~~~~~~-------~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 242 (248)
.+..+.++|||+++++ +..+++|.+||+++.+... ....+ ..-.....+|+++|..+.+..-|..|..|
T Consensus 259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw 338 (441)
T d1qnia2 259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKW 338 (441)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEe
Confidence 7899999999998765 5678999999987532100 00001 11123556899999888888899999999
Q ss_pred ECC
Q psy16005 243 RVP 245 (248)
Q Consensus 243 ~~~ 245 (248)
++.
T Consensus 339 ~~~ 341 (441)
T d1qnia2 339 NIA 341 (441)
T ss_dssp EHH
T ss_pred ccc
Confidence 963
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.67 E-value=5.1e-14 Score=106.68 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=137.0
Q ss_pred cCCcEEEEeCCCCCEEEEe--CCcEEEEEecCCCceeeeeecC------CcceEEEEECcCCcEEEEEccCCeEEEEECC
Q psy16005 17 RGQPIVLGGDPKGKNFLYT--NGNSVIIRNIENPAISDIYTEH------SCAVNVAKYSPSGFYIASGDISGKVRIWDTV 88 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~--~~~~v~v~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 88 (248)
...+.++.++|+|+.++.+ .|+.+.+|+...++.......+ ........+++++.+ +..+.++.+.+|+..
T Consensus 164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 242 (373)
T d2madh_ 164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADIS 242 (373)
T ss_pred eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcC
Confidence 3456788999999876543 3899999999887766554322 222345556666554 455678999999998
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCcee
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKV 166 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~ 166 (248)
............+........+.|.+...+..+.++..++. ..+++..++....++.+.+|| .++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~v~~~d~~t~~~~ 311 (373)
T d2madh_ 243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL-----------LTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE-----------ecCCCceEEeecCCCeEEEEECCCCcEE
Confidence 87654444444444555555566655555555544433322 234456677788889999999 67778
Q ss_pred eeecccCCCceEEEcCCCCE--EEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCC
Q psy16005 167 SSLPIDYEPSSISLDHEHGL--VAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPS 226 (248)
Q Consensus 167 ~~~~~~~~~~~~~~s~~~~~--l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 226 (248)
..+.....+..++|+|||+. +++++.|+.|++||+.+++.+..+. .+....+.+++.++
T Consensus 312 ~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~-~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 312 SQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV-ELGSGPQVLSVMNE 372 (373)
T ss_pred EEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC-CCCCCCcEEEEecC
Confidence 88888888999999999984 4678899999999999999876654 45556677776543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.65 E-value=2.8e-15 Score=114.49 Aligned_cols=216 Identities=11% Similarity=0.075 Sum_probs=150.5
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcE--EEEEccCC----------
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFY--IASGDISG---------- 80 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~--l~~~~~dg---------- 80 (248)
|.........+|||++|++.. ++.|.++|+++++....+. .+...+..++|+|+++. ++..+.+.
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~ 149 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF 149 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence 444566677789999998874 7899999999998877665 35677899999999984 44333321
Q ss_pred -------eEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc----------------EEEE---------
Q psy16005 81 -------KVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG----------------AKVS--------- 128 (248)
Q Consensus 81 -------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----------------~~i~--------- 128 (248)
.+..+|..+.+....... ...+..++|+|||+++++.+.+. +.+.
T Consensus 150 ~~~~~~~~~~~iD~~t~~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 150 SLDNSYTMFTAIDAETMDVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp CGGGEEEEEEEEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred ccccccceEEeecCccceeeEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 235578777765433333 24578899999999998886431 1111
Q ss_pred --------------------------EccCCCCCceeEeCCCCCEEE-EEcCCCeEEEEECCceeeee------------
Q psy16005 129 --------------------------SLPIDYEPSSISLDHEHGLVA-VGGADSKISIVENGAKVSSL------------ 169 (248)
Q Consensus 129 --------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~------------ 169 (248)
.++.+..+..+.++|+|++++ ++..++++.+||..+....+
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~ 306 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA 306 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence 123345678899999999765 56789999999943322111
Q ss_pred --cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCC------CCC---C-----CcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 170 --PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNN------KSL---S-----PKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 170 --~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~------~~~---~-----~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.....+...+|+++|..+.+...|.+|..|++.. +.. + .....+|...+.+..++|||++|+++
T Consensus 307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~ 386 (441)
T d1qnia2 307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386 (441)
T ss_dssp CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence 1222345568999998888888999999999842 111 1 11124677778888899999999999
Q ss_pred c
Q psy16005 234 D 234 (248)
Q Consensus 234 ~ 234 (248)
+
T Consensus 387 ~ 387 (441)
T d1qnia2 387 S 387 (441)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=2.6e-14 Score=111.93 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=133.5
Q ss_pred cEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeee-----cCCcceEEEEECcCCcEEEEEc---------cCCeEEEE
Q psy16005 20 PIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYT-----EHSCAVNVAKYSPSGFYIASGD---------ISGKVRIW 85 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~---------~dg~i~iw 85 (248)
...+.|.++++++. -.++.+.+||+.+++....+. .|...|.++.|||||++|+.++ .++.+.+|
T Consensus 19 ~~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 19 LYSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 34688999998665 457789999999998765443 4557899999999999999874 35788999
Q ss_pred ECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC----------------------------CCc
Q psy16005 86 DTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY----------------------------EPS 137 (248)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------------~~~ 137 (248)
|+.+++. ..+..+...+..+.|+|||+.++...++.+.+|+..... ...
T Consensus 98 d~~~~~~---~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 98 DLNKRQL---ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp ETTTTEE---CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred ECCCCcc---cccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 9998864 356677889999999999999999998888888764321 224
Q ss_pred eeEeCCCCCEEEEEcCCCe-EEEEE---CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc--
Q psy16005 138 SISLDHEHGLVAVGGADSK-ISIVE---NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE-- 211 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-i~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-- 211 (248)
.+.|+|+|+.++....|.. +..+. ...... .......+.+...+ ....+..+.+|++.+++......
T Consensus 175 ~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~g----~~~~~~~~~v~~~~~~~~~~~~~~~ 247 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL---QYPKTVRVPYPKAG----AVNPTVKFFVVNTDSLSSVTNATSI 247 (470)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC---SSCEEEEEECCBTT----SCCCEEEEEEEEGGGCCSSSCCCEE
T ss_pred ccEECCCCCccceeEecCCcCceEEEEeeccCCC---CCCeeeeecccccc----ccCCcceEEEEECCCcceeeecccc
Confidence 4679999999888654432 32222 110000 00000111111111 11223467888988776543221
Q ss_pred --------ccCCcCeEEEEEcCCCcEEEEE
Q psy16005 212 --------LDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 212 --------~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
......+..+.|.++++.++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 277 (470)
T d2bgra1 248 QITAPASMLIGDHYLCDVTWATQERISLQW 277 (470)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred ccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence 1233456789999998866543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.58 E-value=5e-12 Score=93.05 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=142.3
Q ss_pred eecccccccccCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEE
Q psy16005 7 YIFATLPRTQRGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIW 85 (248)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 85 (248)
+++..+|..+ .+..++++|||+++++.. ++.|+.++.. ++ ...+......+.+++|+|+|+++++...++.+..+
T Consensus 19 ~v~~~~p~~~--~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~ 94 (302)
T d2p4oa1 19 KIITSFPVNT--FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 94 (302)
T ss_dssp EEEEEECTTC--CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred cEEEECCCCC--CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence 3455565533 477899999999888876 8889888855 33 33344566789999999999998888888888888
Q ss_pred ECCCCceeee-eeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCC----------------------CCceeEeC
Q psy16005 86 DTVNKEHILK-NEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDY----------------------EPSSISLD 142 (248)
Q Consensus 86 d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------~~~~~~~~ 142 (248)
+......... ............+++.++++++++....+ .+|.+.... .+..+.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~ 173 (302)
T d2p4oa1 95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 173 (302)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred EecccccceeeccccCCccccceeEEccCCCEEeeccccc-cceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence 7654332111 11122345688999999998776655433 333322111 11233333
Q ss_pred CCCCEEEEEcCCCeEEEEECCc--e---eeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 143 HEHGLVAVGGADSKISIVENGA--K---VSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~--~---~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
. +.++++....+.|..++... . .........+..++++++|+++++...++.|..++..............-..
T Consensus 174 ~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~ 252 (302)
T d2p4oa1 174 G-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIG 252 (302)
T ss_dssp T-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTT
T ss_pred C-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCC
Confidence 2 34556667778888877221 1 1112234456789999999988887788999999876543211111123345
Q ss_pred eEEEEE---cCCCcEEEEEc
Q psy16005 218 VTDCSF---SPSNEYLVASD 234 (248)
Q Consensus 218 v~~~~~---s~~~~~l~~~~ 234 (248)
.++++| ++|++.|+.++
T Consensus 253 pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 253 STAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp EEEEEECCSTTTTTEEEEEE
T ss_pred ceEEEEcCCCCCCCEEEEEC
Confidence 799999 67888787654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=1.1e-11 Score=89.23 Aligned_cols=225 Identities=11% Similarity=0.065 Sum_probs=145.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCcee
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHI 93 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (248)
+.-.+..++++++|+.+++.. .+.+..++............-......++++++++++++....+.+++++-.+....
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence 345678999999999777653 567777765543322222121234578899999998887777777776665544422
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEc----------cCCCCCceeEeCCCCCEEEEEcCCCeEEEEEC
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSL----------PIDYEPSSISLDHEHGLVAVGGADSKISIVEN 162 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (248)
.... .-..+.+++++++++.+++-..+. ....+. ..-..+..++++++++++++...++.|..++.
T Consensus 92 --~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 92 --LPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp --CCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred --eeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence 2222 235678999999988766543222 222221 12245678999999999888888899999983
Q ss_pred -Cceeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeE
Q psy16005 163 -GAKVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKV 239 (248)
Q Consensus 163 -~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 239 (248)
+.....+. .-..+..++++++|+++++-...+.|..++....... ......-.....++++++|..+++-..++.|
T Consensus 169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred ccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence 33333332 2345688999999998888888888888876654321 2211233467899999999877776667777
Q ss_pred EEEEC
Q psy16005 240 VLYRV 244 (248)
Q Consensus 240 ~vw~~ 244 (248)
+.++.
T Consensus 248 ~~i~~ 252 (260)
T d1rwia_ 248 VKLTS 252 (260)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 65543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.55 E-value=2e-12 Score=97.77 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=139.3
Q ss_pred ccCCcEEEEeCCCCCEEEEeCCcEEEEEecCCC-ceeeee-ecCCcceEEEEECcCCcEE--EEEc-cCCeEEEEECCCC
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTNGNSVIIRNIENP-AISDIY-TEHSCAVNVAKYSPSGFYI--ASGD-ISGKVRIWDTVNK 90 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~-~~~~~~-~~~~~~v~~~~~s~~~~~l--~~~~-~dg~i~iwd~~~~ 90 (248)
....+..|+|+|++++|+++..+.+..|.+... ...... .........+.++++++.+ +++. ..++|..+.+...
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence 344566799999999999888777777766532 222211 1122334567788888754 3332 2355555443211
Q ss_pred c-eeeee--------------eccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEcc---------------CCCCCce
Q psy16005 91 E-HILKN--------------EFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLP---------------IDYEPSS 138 (248)
Q Consensus 91 ~-~~~~~--------------~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~---------------~~~~~~~ 138 (248)
. ..... ........+.++.|+|||++++++.. +.+.++++. ....++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~ 197 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence 1 00000 00112234789999999999999874 345555432 1345778
Q ss_pred eEeCCCCCEEEE-EcCCCeEEEEE--CCce--e---eeecc---------------cCCCceEEEcCCCCEEEEEcC---
Q psy16005 139 ISLDHEHGLVAV-GGADSKISIVE--NGAK--V---SSLPI---------------DYEPSSISLDHEHGLVAVGGA--- 192 (248)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~i~~~~--~~~~--~---~~~~~---------------~~~~~~~~~s~~~~~l~~~~~--- 192 (248)
+.++|+++++.+ ...++.|.+|+ .+.. . ...+. ......+.++|||++|+++..
T Consensus 198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~ 277 (365)
T d1jofa_ 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence 999999997754 55678899988 2221 1 11111 011346889999999888743
Q ss_pred ---CCcEEEEEcCCCCCCCccc-----ccCCcCeEEEEEcC-CCcEEEEE-cCCCeEEEEECCC
Q psy16005 193 ---DSKVHIYELNNKSLSPKAE-----LDHLGPVTDCSFSP-SNEYLVAS-DAHRKVVLYRVPD 246 (248)
Q Consensus 193 ---d~~v~i~d~~~~~~~~~~~-----~~~~~~v~~~~~s~-~~~~l~~~-~~d~~i~vw~~~~ 246 (248)
.+.|..|++.....+.... .........++++| +|++|+++ ..++.|.+|+++.
T Consensus 278 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 2237777776543221111 01234567899998 79988777 4579999998753
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.54 E-value=5.2e-11 Score=87.92 Aligned_cols=226 Identities=10% Similarity=0.101 Sum_probs=148.9
Q ss_pred CcEEEEeCCCCCEEEEeC--------CcEEEEEecCCCceeeeeec----CCcceEEEEECcCCcEEEEEccCCeEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTN--------GNSVIIRNIENPAISDIYTE----HSCAVNVAKYSPSGFYIASGDISGKVRIWD 86 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--------~~~v~v~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 86 (248)
.+..++|.|+|+++++.. ++.|..||..+++....... .......++|.++++.++++.....+...+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 366789999999887653 35788999887765433221 122356899999998888887777888899
Q ss_pred CCCCceeeeee-ccCCC-CCeeEEEEecCCCEEEEEeCC--------------cEEEEEccCCC----------CCceeE
Q psy16005 87 TVNKEHILKNE-FHPIG-GPIKDIAWSPDNQRMISIVEN--------------GAKVSSLPIDY----------EPSSIS 140 (248)
Q Consensus 87 ~~~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~~--------------~~~i~~~~~~~----------~~~~~~ 140 (248)
...+....... ..+.. .....++++++|+..++.... .-.+|.+..+. .+..++
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~ 178 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIA 178 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEE
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeE
Confidence 87654321111 11111 135789999999887764321 12456554332 234677
Q ss_pred eCCCCC-----EEEEEcCCCeEEEEE---CCcee-----eeecc--cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 141 LDHEHG-----LVAVGGADSKISIVE---NGAKV-----SSLPI--DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 141 ~~~~~~-----~~~~~~~~~~i~~~~---~~~~~-----~~~~~--~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
+++++. ++++.+..+.|..|+ .+... ..+.. ...+..++++++|++.++....+.|.+||.++++
T Consensus 179 ~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 179 VRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred ECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE
Confidence 877654 555667788888876 22221 11111 1235679999999987777778899999998877
Q ss_pred CCCcccccCCcCeEEEEEcCCCcEE-EEEcCCCeEEEEECC
Q psy16005 206 LSPKAELDHLGPVTDCSFSPSNEYL-VASDAHRKVVLYRVP 245 (248)
Q Consensus 206 ~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~vw~~~ 245 (248)
...... .....+++++|.||++.| ++.+.+|.|...++.
T Consensus 259 ~~~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 259 PKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 654443 234568999999999755 556677888888764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=6.2e-11 Score=85.39 Aligned_cols=202 Identities=9% Similarity=0.048 Sum_probs=123.5
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ 115 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 115 (248)
.|+|.|.+..+... +..+...+.+.+|||||+.||..... ..+.+.+...+... .+..+........|+|+|+
T Consensus 20 ~l~i~d~dG~~~~~-l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETTSCSCEE-EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTTSS
T ss_pred EEEEEcCCCCCcEE-EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---EEeeeecccccceecCCCC
Confidence 68888876544444 44567788999999999999876443 24666777666532 3344567888999999999
Q ss_pred EEEEEeCCc--EEEEEcc-----------CCCCCceeEeCCCCCEEE-EEcCCCe--EEEEEC-Cceee-eecccCCCce
Q psy16005 116 RMISIVENG--AKVSSLP-----------IDYEPSSISLDHEHGLVA-VGGADSK--ISIVEN-GAKVS-SLPIDYEPSS 177 (248)
Q Consensus 116 ~l~~~~~~~--~~i~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~--i~~~~~-~~~~~-~~~~~~~~~~ 177 (248)
.++...... ..++... .........+++++..+. +...++. +...+. ..... ..........
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~ 175 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD 175 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEE
T ss_pred eeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccc
Confidence 998876433 2222221 112222334556655444 4444554 444442 22222 2222333456
Q ss_pred EEEcCCCCEEEEEcCC-Cc--EEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcC---CCeEEEEECCCC
Q psy16005 178 ISLDHEHGLVAVGGAD-SK--VHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDA---HRKVVLYRVPDF 247 (248)
Q Consensus 178 ~~~s~~~~~l~~~~~d-~~--v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~vw~~~~~ 247 (248)
..|+|+++.++..+.+ +. +.+.+...+.. ... .+........|||||+.|+..+. ...|++++++.+
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~-~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVL-SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EEC-CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred cccccccceeEEEeecCCceeeeEeecccccc--eEe-ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 7899999988876654 34 44445444433 232 34556778899999999876543 357888888754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=3.1e-11 Score=86.99 Aligned_cols=203 Identities=15% Similarity=0.231 Sum_probs=128.5
Q ss_pred cCCcEEEEeCCCCCEEEEeC----CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc-CCe--EEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN----GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-SGK--VRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~----~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~ 89 (248)
...+.+-+|||||+.||+.. ...+.+.+...+.... +..+........|+|+|+.++.... ++. +..+....
T Consensus 38 ~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~ 116 (269)
T d2hqsa1 38 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 116 (269)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-EeeeecccccceecCCCCeeeEeeecCCccceeeccccc
Confidence 45567889999999999864 3467777777665544 4467788889999999998886543 333 33333333
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-Cc-EEEEEccCCC-----------CCceeEeCCCCCEEEEEcCCC-
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-NG-AKVSSLPIDY-----------EPSSISLDHEHGLVAVGGADS- 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~-~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~- 155 (248)
... ..............++++++.++..+. ++ ..++...... ......++|+++.++..+.++
T Consensus 117 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 117 GQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp CCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ccc---eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCC
Confidence 221 222233445556677888776666553 32 3444443221 223557899999887765443
Q ss_pred e--EEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcC---CCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 156 K--ISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGA---DSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 156 ~--i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
. +.+.+ .......+..........|||||+.|+..+. ...|+++++..+.... +. ...+.+...+|||
T Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt-~~~g~~~~p~WSP 267 (269)
T d2hqsa1 194 QQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LP-ATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CC-CSSSEEEEEEECC
T ss_pred ceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-Ee-CCCCcEEeEEeCC
Confidence 3 34445 3333444445555677899999998876553 3468999998776532 32 3456788899998
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.46 E-value=5e-10 Score=81.18 Aligned_cols=225 Identities=8% Similarity=0.119 Sum_probs=147.2
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeec------CCcceEEEEECcC-CcEEEE-EccCCeEEEEECC
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTE------HSCAVNVAKYSPS-GFYIAS-GDISGKVRIWDTV 88 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~------~~~~v~~~~~s~~-~~~l~~-~~~dg~i~iwd~~ 88 (248)
..+..++++|+|+++++-. .+.|++||.+ ++.+..+.. .......+++.++ +..+++ .+.++.|..++..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 4578999999999776644 7899999954 666555421 1112345565554 444443 3455678888764
Q ss_pred CCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc-----------CCCCCceeEeCCCCCEEEEEcCCCe
Q psy16005 89 NKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP-----------IDYEPSSISLDHEHGLVAVGGADSK 156 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
++..... -.........+++.++++.+++..... +.+++.. ....+..+++.++++++++....+.
T Consensus 102 -g~~~~~~-~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 -GQFVRKF-GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp -SCEEEEE-CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred -ccceeec-CCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccc
Confidence 3332212 122345678899999888776654433 2222211 1234567788899999999999999
Q ss_pred EEEEE-CCceeeeeccc---CCCceEEEcCCCCEEEEEcC-CCcEEEEEcCCCCCCCccccc-CCcCeEEEEEcCCCcEE
Q psy16005 157 ISIVE-NGAKVSSLPID---YEPSSISLDHEHGLVAVGGA-DSKVHIYELNNKSLSPKAELD-HLGPVTDCSFSPSNEYL 230 (248)
Q Consensus 157 i~~~~-~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~-d~~v~i~d~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 230 (248)
|++|+ .++.+..+... ..+..++++|+|+++++-.. ++.|.+|+. +++.+..+... .......+++.|||.++
T Consensus 180 V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~ 258 (279)
T d1q7fa_ 180 VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVV 258 (279)
T ss_dssp EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred eeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence 99999 67777666432 23688999999997766543 457999985 45543333222 23457899999999755
Q ss_pred EEEcCCCeEEEEECCCC
Q psy16005 231 VASDAHRKVVLYRVPDF 247 (248)
Q Consensus 231 ~~~~~d~~i~vw~~~~~ 247 (248)
+ ++.++.|++|+....
T Consensus 259 V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 259 L-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp E-EETTTEEEEEECSCC
T ss_pred E-EeCCCeEEEEEeeee
Confidence 5 557899999998764
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.45 E-value=1.7e-12 Score=98.26 Aligned_cols=198 Identities=9% Similarity=0.032 Sum_probs=126.9
Q ss_pred cEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee-
Q psy16005 20 PIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN- 96 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 96 (248)
...++|+|||+++++++ ++.+.+||+.+++....+..+..... +......++..+.||.+.+++..........
T Consensus 126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~ 202 (368)
T d1mdah_ 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence 34689999999998874 78999999999998887765543321 1112345666777888888877655432111
Q ss_pred ---eccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccC----------------------CCCCceeEeCCCCCEEEEE
Q psy16005 97 ---EFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPI----------------------DYEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 97 ---~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 151 (248)
....+...+....+.+++..+...+ ..+.+.++.. ......+++++++..++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~ 281 (368)
T d1mdah_ 203 GAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred ecccccccccceeecccccCcEEEEecC-CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence 1222334445566666665544332 2222222211 1223567888888876654
Q ss_pred cCC---------CeEEEEE--CCceeeeecccCCCceEEEcCCCC--EEEEEcCCCcEEEEEcCCCCCCCcccccCCcCe
Q psy16005 152 GAD---------SKISIVE--NGAKVSSLPIDYEPSSISLDHEHG--LVAVGGADSKVHIYELNNKSLSPKAELDHLGPV 218 (248)
Q Consensus 152 ~~~---------~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v 218 (248)
..+ ..+.+|| +++.+..+.....+..++|+|||+ .++++..++.|++||..+++.+..+..+ ...
T Consensus 282 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g--~~P 359 (368)
T d1mdah_ 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGP 359 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCC
T ss_pred ecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC--CCC
Confidence 322 3588898 667777777777789999999997 3456677899999999999987665433 224
Q ss_pred EEEEE
Q psy16005 219 TDCSF 223 (248)
Q Consensus 219 ~~~~~ 223 (248)
+.|++
T Consensus 360 ~~l~~ 364 (368)
T d1mdah_ 360 ESLSV 364 (368)
T ss_dssp CEEEC
T ss_pred CEEEE
Confidence 55544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.44 E-value=1.2e-10 Score=84.20 Aligned_cols=219 Identities=12% Similarity=0.081 Sum_probs=124.9
Q ss_pred EeCCC--CCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc-C-----CeEEEEECCCCceeee
Q psy16005 24 GGDPK--GKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI-S-----GKVRIWDTVNKEHILK 95 (248)
Q Consensus 24 ~~s~~--~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~ 95 (248)
..||| |+.++..+++.|++.|+.+++.. .+..+.+.+...+|||||+.||.... + ..|.+++..+++....
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l 83 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI 83 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence 45788 99999998889999999988765 46667788899999999999986532 2 2477778777764321
Q ss_pred eecc----CCCCCeeEEEEecCCCEEEEEeCCc-----EEEEEccCCC--------CCceeEeCCCCC-EEEEEcCCC--
Q psy16005 96 NEFH----PIGGPIKDIAWSPDNQRMISIVENG-----AKVSSLPIDY--------EPSSISLDHEHG-LVAVGGADS-- 155 (248)
Q Consensus 96 ~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~-----~~i~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~-- 155 (248)
.... ..........|+|||+.++...... ...+.+.... ....-.+.+++. .++......
T Consensus 84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (281)
T d1k32a2 84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPH 163 (281)
T ss_dssp CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTT
T ss_pred eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccce
Confidence 1111 1123456788999999998875322 1222222111 111122223332 222221111
Q ss_pred -----------eEEEEECCceeeeecccCCCceEEEcCCCCEEEEEcC--CCcEEEEEcCCCCCCCcccccCCcCeEEEE
Q psy16005 156 -----------KISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGA--DSKVHIYELNNKSLSPKAELDHLGPVTDCS 222 (248)
Q Consensus 156 -----------~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~ 222 (248)
........................++++. .+..... ...|+++|+.+++... +...... ....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~--~~~~ 239 (281)
T d1k32a2 164 WKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDY--YPRH 239 (281)
T ss_dssp STTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEE-CCCCCSS--CEEE
T ss_pred eeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEE-eecCCCc--cccc
Confidence 01111122222222333334445556553 2233333 3458888888776533 2212222 3346
Q ss_pred EcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 223 FSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 223 ~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|+|||+.|+.. .++.|+++|+++++
T Consensus 240 ~SpDG~~I~f~-~~~~l~~~d~~~g~ 264 (281)
T d1k32a2 240 LNTDGRRILFS-KGGSIYIFNPDTEK 264 (281)
T ss_dssp EEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred CcCCCCEEEEE-eCCEEEEEECCCCC
Confidence 89999988765 46789999998875
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.42 E-value=8.6e-10 Score=81.49 Aligned_cols=215 Identities=14% Similarity=0.129 Sum_probs=139.7
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEcc----CCeEEEEECCCCcee
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDI----SGKVRIWDTVNKEHI 93 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~ 93 (248)
.+..++|.++|+++++-. ++.|+.|+.++++....+.........++++++|+++++... .+.+...+.......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 346899999998665543 889999998877666655555667889999999998776543 234555555554432
Q ss_pred eeeeccCCCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCC-----------CCCceeEeCCCCCEE-EEEcCCCe
Q psy16005 94 LKNEFHPIGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPID-----------YEPSSISLDHEHGLV-AVGGADSK 156 (248)
Q Consensus 94 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~ 156 (248)
....-..-...+..+++.++|+..++.... .-.++.+..+ ..+..++++|+++.+ ++-+..+.
T Consensus 121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCc
Confidence 211111123457789999999866654321 1134444322 234568999999855 55567888
Q ss_pred EEEEE---CCceeeee--------cccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccc-----cCCcCeEE
Q psy16005 157 ISIVE---NGAKVSSL--------PIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAEL-----DHLGPVTD 220 (248)
Q Consensus 157 i~~~~---~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----~~~~~v~~ 220 (248)
|..|+ .+...... .....+..++++++|++.++....+.|.+||. .++.+..... ++...+++
T Consensus 201 I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~ 279 (319)
T d2dg1a1 201 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTH 279 (319)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCE
T ss_pred eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeee
Confidence 99887 22221111 11223568999999998888888899999996 4554433322 24446789
Q ss_pred EEEcCCCcEEEEEc
Q psy16005 221 CSFSPSNEYLVASD 234 (248)
Q Consensus 221 ~~~s~~~~~l~~~~ 234 (248)
++|.|++..+++..
T Consensus 280 ~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 280 PQFIPGTNQLIICS 293 (319)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEeCCCCEEEEEc
Confidence 99999887666553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=6.4e-11 Score=92.08 Aligned_cols=216 Identities=13% Similarity=0.053 Sum_probs=128.6
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecC---CcceEEEEECcCCcEEEEE---------ccCCeEEEEECCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEH---SCAVNVAKYSPSGFYIASG---------DISGKVRIWDTVN 89 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~ 89 (248)
...|.+++.++....+|.+.+||+.+++....+... .-.+....||||+++++.. +..+.+.++|+.+
T Consensus 21 ~~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 21 EAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CCEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 357999998876666889999999887764434322 2356778899999988775 3457899999998
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC----------------------------CCCceeEe
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID----------------------------YEPSSISL 141 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~----------------------------~~~~~~~~ 141 (248)
+..............+....|||||+.++...++.+.+.+.... .....+.|
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 87543222333345566789999999999988776655543211 11134557
Q ss_pred CCCCCEEEEEcCC-CeEEEEECCceeeeecc-----cCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCccc----
Q psy16005 142 DHEHGLVAVGGAD-SKISIVENGAKVSSLPI-----DYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAE---- 211 (248)
Q Consensus 142 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~---- 211 (248)
+|||+.||....| ..+..+. +.. ...+..+.+..-|.- .....+.++|+.++.......
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~-------~~~~~~~~~p~~~~~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~~~~~ 249 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIME-------LPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDD 249 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEE-------ECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCC
T ss_pred CCCCCeEEEEEecccccceee-------cccccccccceeeeeeccccCCC----CCceeEEEEecCCCcEEEEEeccCc
Confidence 8888887765322 2222211 110 001111221111110 011247778887654322111
Q ss_pred -ccCCcCeEEEEEcCCCcEEEEEc-CC---CeEEEEECCCCC
Q psy16005 212 -LDHLGPVTDCSFSPSNEYLVASD-AH---RKVVLYRVPDFE 248 (248)
Q Consensus 212 -~~~~~~v~~~~~s~~~~~l~~~~-~d---~~i~vw~~~~~~ 248 (248)
......+..+.|+|+++.++... .+ ..+.++|..+++
T Consensus 250 ~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~ 291 (465)
T d1xfda1 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (465)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred CccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence 11233578899999998666542 22 357788887764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.30 E-value=4.1e-10 Score=84.86 Aligned_cols=208 Identities=12% Similarity=0.137 Sum_probs=121.6
Q ss_pred CcEEEEEec--CCCcee--eee-ecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEe
Q psy16005 37 GNSVIIRNI--ENPAIS--DIY-TEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWS 111 (248)
Q Consensus 37 ~~~v~v~~~--~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 111 (248)
++.|+++.+ ++++.. ... ......+..++|+|+++.|+++.. +.+..|.+.....+..............++++
T Consensus 13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~ 91 (365)
T d1jofa_ 13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDAD 91 (365)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTT
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEEC
Confidence 456655544 444432 111 123445677999999999988764 56777776643322212111223445667778
Q ss_pred cCCCEEEEEe--CCc--EE------------EEEc---------------cCCCCCceeEeCCCCCEEEEEc-CCCeEEE
Q psy16005 112 PDNQRMISIV--ENG--AK------------VSSL---------------PIDYEPSSISLDHEHGLVAVGG-ADSKISI 159 (248)
Q Consensus 112 ~~~~~l~~~~--~~~--~~------------i~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 159 (248)
++++.++... ... +. +..+ +....+..+.++|++++++++. ....|.+
T Consensus 92 ~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~ 171 (365)
T d1jofa_ 92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT 171 (365)
T ss_dssp SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEE
Confidence 8887543322 111 11 1111 1122356899999999777765 3557888
Q ss_pred EE---CCceee--e---ecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCCCCccc------------------c
Q psy16005 160 VE---NGAKVS--S---LPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSLSPKAE------------------L 212 (248)
Q Consensus 160 ~~---~~~~~~--~---~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~------------------~ 212 (248)
|+ .+.... . ......+..++|+|+++++.+.. .+++|.+|++..++...... .
T Consensus 172 ~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (365)
T d1jofa_ 172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred EEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccc
Confidence 76 222211 1 12245678899999999886665 47889999997765321110 0
Q ss_pred cCCcCeEEEEEcCCCcEEEEEcC------CCeEEEEECC
Q psy16005 213 DHLGPVTDCSFSPSNEYLVASDA------HRKVVLYRVP 245 (248)
Q Consensus 213 ~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~ 245 (248)
.+......+.++|||++|+++.. .+.|..|++.
T Consensus 252 ~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~ 290 (365)
T d1jofa_ 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence 12234567899999999988732 2336666653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=8e-09 Score=73.89 Aligned_cols=184 Identities=10% Similarity=0.105 Sum_probs=121.1
Q ss_pred cceEEEEECcCCcEEEEE-ccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEE--------
Q psy16005 59 CAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSS-------- 129 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~-------- 129 (248)
....+++++++|+..++. +..+.+..++....... .....+ ......++++++++.+++...++...+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-ECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-EeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence 345899999999976654 45577777776554322 122222 2356789999999876655444432222
Q ss_pred --ccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCc-eeeeec--ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCC
Q psy16005 130 --LPIDYEPSSISLDHEHGLVAVGGADSKISIVENGA-KVSSLP--IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNK 204 (248)
Q Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~ 204 (248)
......+..++++++++++++...+..+..++... ...... ....+..++++|+++.+++...++.|..+|....
T Consensus 92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence 11224567888999999888877777777777332 222222 2345789999999998888888888999998765
Q ss_pred CCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 205 SLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 205 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.... ...........+++.++|+++++....+.|..++..
T Consensus 172 ~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~ 211 (260)
T d1rwia_ 172 NQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 211 (260)
T ss_dssp CEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred eeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence 4322 222344567899999999988888778888887654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.21 E-value=9e-09 Score=75.32 Aligned_cols=181 Identities=10% Similarity=0.038 Sum_probs=121.4
Q ss_pred ceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc-------
Q psy16005 60 AVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP------- 131 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~------- 131 (248)
.+..++++|||+++++...+++|..|+..... . .+......+.+++|++||+.+++...++ +..++..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~---~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q---IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E---EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-E---EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 57889999999999999999999999866432 2 2333457799999999999888775443 3444432
Q ss_pred ------CCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceeee-ec----------c--cCCCceEEEcCCCCEEEEEcC
Q psy16005 132 ------IDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVSS-LP----------I--DYEPSSISLDHEHGLVAVGGA 192 (248)
Q Consensus 132 ------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~----------~--~~~~~~~~~s~~~~~l~~~~~ 192 (248)
....+..+.+.++++++++.+.++.+..++....... .. . ...+..+.++.+ .++++.+.
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~ 183 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTE 183 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETT
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCC
Confidence 2334567888999999998888888888883322111 10 0 111244555432 34555667
Q ss_pred CCcEEEEEcCCCCCCCccc-ccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 193 DSKVHIYELNNKSLSPKAE-LDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 193 d~~v~i~d~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
.+.|+.++........... .........++++++|.++++...++.|..++..
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence 8889999887654332211 1223456789999999988887778888888653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.13 E-value=2.5e-08 Score=73.26 Aligned_cols=184 Identities=12% Similarity=0.145 Sum_probs=115.7
Q ss_pred CCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeeecCC----cceEEEEECcCCcEEEEEcc--------------
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYTEHS----CAVNVAKYSPSGFYIASGDI-------------- 78 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~-------------- 78 (248)
+....++|.++|+.++++. .+.+...+.+............ ...+.+++.++|++.++-..
T Consensus 71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence 3467899999998777765 5678888876543322111111 13577999999988776432
Q ss_pred -CCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC----EEEEEeCCcEEE--EEccCC-----------------C
Q psy16005 79 -SGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ----RMISIVENGAKV--SSLPID-----------------Y 134 (248)
Q Consensus 79 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~~~~~~i--~~~~~~-----------------~ 134 (248)
.|.|..++.. ++.. .+...-...+.++|+|++. .|+++....-++ +++... .
T Consensus 151 ~~G~v~~~~~d-g~~~---~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T d1pjxa_ 151 KFGSIYCFTTD-GQMI---QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp SCEEEEEECTT-SCEE---EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred CCceEEEEeec-Ccee---EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence 2345444443 2221 1111123457899998764 566554433333 333211 1
Q ss_pred CCceeEeCCCCCEEEEEcCCCeEEEEE-C-Cceeeeeccc-CCCceEEEcCCCC-EEEEEcCCCcEEEEEcCCCC
Q psy16005 135 EPSSISLDHEHGLVAVGGADSKISIVE-N-GAKVSSLPID-YEPSSISLDHEHG-LVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-~~~~~~~~~~-~~~~~~~~s~~~~-~l~~~~~d~~v~i~d~~~~~ 205 (248)
.+..+++..+|+++++....+.|..|+ . ++....+..+ ..+++++|.|+++ ++++.+.+|.|..+++...-
T Consensus 227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 244688899999988888889999999 3 3444555554 4578999999997 45566678888888876443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.12 E-value=1.5e-07 Score=69.16 Aligned_cols=185 Identities=11% Similarity=0.142 Sum_probs=120.9
Q ss_pred CcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC---cEEEEEcc---
Q psy16005 58 SCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN---GAKVSSLP--- 131 (248)
Q Consensus 58 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~~i~~~~--- 131 (248)
...+..++|.++|++.++-...+.|..|+..+++.. ............+++++||+.+++...+ ...+..+.
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~--~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE--EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence 344578999999997777778899999998776533 2223345678899999999877765432 12233321
Q ss_pred -----------CCCCCceeEeCCCCCEEEEEcC------CCeEEEEE-CCceeeeec-ccCCCceEEEcCCCCEEEEE-c
Q psy16005 132 -----------IDYEPSSISLDHEHGLVAVGGA------DSKISIVE-NGAKVSSLP-IDYEPSSISLDHEHGLVAVG-G 191 (248)
Q Consensus 132 -----------~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~-~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~-~ 191 (248)
....+..+.+.++|+++++... .+.+..++ .+..+..+. .-..++.++|+|+++.|+++ +
T Consensus 117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence 1223456788999987776432 23355555 343333332 23346889999999866554 5
Q ss_pred CCCcEEEEEcCCCCCCCcc-------cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 192 ADSKVHIYELNNKSLSPKA-------ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 192 ~d~~v~i~d~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
..+.|+.|++......... ..........+++.++|++.++....+.|.+|+-
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p 256 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 256 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence 6789999998754321110 0111233578999999998888888899999984
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=7.3e-08 Score=74.62 Aligned_cols=230 Identities=12% Similarity=0.141 Sum_probs=126.6
Q ss_pred CCcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeec-CCcce-----------------EEEEECcCCcEEEEEccC
Q psy16005 18 GQPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTE-HSCAV-----------------NVAKYSPSGFYIASGDIS 79 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~-~~~~v-----------------~~~~~s~~~~~l~~~~~d 79 (248)
+.+....|||||+.+|...++.|++.+..+++..+.... ..+.| .++.|||||++||....|
T Consensus 114 ~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D 193 (465)
T d1xfda1 114 AKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (465)
T ss_dssp CCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred cccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence 445568899999999999999999999887766554432 11111 478899999999986422
Q ss_pred -C---------------------------------eEEEEECCCCceeeeee----ccCCCCCeeEEEEecCCCEEEEEe
Q psy16005 80 -G---------------------------------KVRIWDTVNKEHILKNE----FHPIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 80 -g---------------------------------~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
. .+.++|+.++....... .......+..+.|+++++.++...
T Consensus 194 ~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~ 273 (465)
T d1xfda1 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL 273 (465)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred ccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEE
Confidence 1 24455554443211110 111122467789999988666554
Q ss_pred CCc-----EEEEEccCC-----------C----CCceeEeCCCCCEEE---EEcCCC--eEEEEE--------CCceeee
Q psy16005 122 ENG-----AKVSSLPID-----------Y----EPSSISLDHEHGLVA---VGGADS--KISIVE--------NGAKVSS 168 (248)
Q Consensus 122 ~~~-----~~i~~~~~~-----------~----~~~~~~~~~~~~~~~---~~~~~~--~i~~~~--------~~~~~~~ 168 (248)
... +.+++...+ . ......++++|+.++ ....+| .++.+. .+.....
T Consensus 274 nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~ 353 (465)
T d1xfda1 274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS 353 (465)
T ss_dssp ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred ccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEE
Confidence 321 233333211 1 123456788887432 222222 344332 1222223
Q ss_pred ec-ccCCCceE-EEcCCCCEEE-EEcCCC--cEEEEE--cCCCCCCCc--ccccCCcCeEEEEEcCCCcEEEEEcCC---
Q psy16005 169 LP-IDYEPSSI-SLDHEHGLVA-VGGADS--KVHIYE--LNNKSLSPK--AELDHLGPVTDCSFSPSNEYLVASDAH--- 236 (248)
Q Consensus 169 ~~-~~~~~~~~-~~s~~~~~l~-~~~~d~--~v~i~d--~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 236 (248)
+. ....|..+ .++++++.+. ++..++ .-++|. +........ ..........++.|||++++++.....
T Consensus 354 LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~ 433 (465)
T d1xfda1 354 ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGV 433 (465)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSS
T ss_pred eccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCC
Confidence 32 34455554 6888877554 444432 334444 443322211 112344567899999999998855432
Q ss_pred CeEEEEECCCC
Q psy16005 237 RKVVLYRVPDF 247 (248)
Q Consensus 237 ~~i~vw~~~~~ 247 (248)
-.+.+++..++
T Consensus 434 P~~~~~~~~~~ 444 (465)
T d1xfda1 434 PMVTVHNTTDK 444 (465)
T ss_dssp CCEEEEETTTC
T ss_pred CeEEEEECCCC
Confidence 45666666554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=3.2e-07 Score=66.08 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=120.0
Q ss_pred cEEEEeCCCC-CEEEEeC--CcEEEEEecCCCceeeeee-cCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeee
Q psy16005 20 PIVLGGDPKG-KNFLYTN--GNSVIIRNIENPAISDIYT-EHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILK 95 (248)
Q Consensus 20 v~~~~~s~~~-~~l~~~~--~~~v~v~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (248)
...+++.++. ..++... ++.|..++. .++....+. ........+++.++++++++....+.+.+++... +.+..
T Consensus 72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~ 149 (279)
T d1q7fa_ 72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK 149 (279)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE
T ss_pred cccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeec
Confidence 3445544443 3344332 456767764 455554443 3345578899999999888888888898888653 43333
Q ss_pred eeccCCCCCeeEEEEecCCCEEEEEeCCc-EEEEEcc-----------CCCCCceeEeCCCCCEEEEEcC-CCeEEEEE-
Q psy16005 96 NEFHPIGGPIKDIAWSPDNQRMISIVENG-AKVSSLP-----------IDYEPSSISLDHEHGLVAVGGA-DSKISIVE- 161 (248)
Q Consensus 96 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~- 161 (248)
.....+......+++.++++.+++....+ +.+++.. ....+..++++++++++++-.. ++.|.+++
T Consensus 150 ~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 150 FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred ccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 33344566788899999887666554332 3444432 1234678899999998877554 45799998
Q ss_pred CCceeeeeccc---CCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCC
Q psy16005 162 NGAKVSSLPID---YEPSSISLDHEHGLVAVGGADSKVHIYELNNKS 205 (248)
Q Consensus 162 ~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~ 205 (248)
.++.+..+... ..+..+++.|+|.++ +++.++.|++|......
T Consensus 230 ~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 230 DGQLISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLA 275 (279)
T ss_dssp TSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeec
Confidence 67766665432 347889999999755 45678899999987654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.01 E-value=1e-06 Score=63.89 Aligned_cols=206 Identities=13% Similarity=0.068 Sum_probs=134.8
Q ss_pred EEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeecc
Q psy16005 22 VLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH 99 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 99 (248)
+..|++....|.... .+.|..||..+++.. .+ .....+.++++.++++++++. .+ .+..+|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeee
Confidence 566888666666664 789999998887653 23 335678899999998877654 44 5889999988753222222
Q ss_pred C--CCCCeeEEEEecCCCEEEEEeCC-----cEEEEEccCC---------CCCceeEeCCCCCEE-EEEcCCCeEEEEEC
Q psy16005 100 P--IGGPIKDIAWSPDNQRMISIVEN-----GAKVSSLPID---------YEPSSISLDHEHGLV-AVGGADSKISIVEN 162 (248)
Q Consensus 100 ~--~~~~v~~~~~~~~~~~l~~~~~~-----~~~i~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~ 162 (248)
. ....+..+.+.|+|+..++.... ...+|.+... ..+..+.++++++.+ ++.+..+.|..++.
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~ 177 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 177 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeee
Confidence 1 12357889999999877765422 2244444321 235678899998854 45566788888761
Q ss_pred ----C----ceeeeec---ccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEc-CCCcEE
Q psy16005 163 ----G----AKVSSLP---IDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFS-PSNEYL 230 (248)
Q Consensus 163 ----~----~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l 230 (248)
+ +...... ....+..++++.+|.+.++.-..+.|..||.. ++.+.....+ ...+++++|- ||.+.|
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP-~~~~T~~~FGG~d~~~L 255 (295)
T d2ghsa1 178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVP-GKQTTCPAFIGPDASRL 255 (295)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECS-CSBEEEEEEESTTSCEE
T ss_pred cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCC-CCceEEEEEeCCCCCEE
Confidence 1 1111111 23346788999999977776677889999964 5555555433 3468999996 676666
Q ss_pred EEE
Q psy16005 231 VAS 233 (248)
Q Consensus 231 ~~~ 233 (248)
+..
T Consensus 256 yvT 258 (295)
T d2ghsa1 256 LVT 258 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.75 E-value=6e-06 Score=59.70 Aligned_cols=178 Identities=10% Similarity=0.019 Sum_probs=115.4
Q ss_pred EEEEECcC-CcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC-------
Q psy16005 62 NVAKYSPS-GFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID------- 133 (248)
Q Consensus 62 ~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~------- 133 (248)
.+..|++. +++..+=-..+.|.-||..+++.. ...+ ...+.++++.++|.++++ +.+++..++....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~---~~~~~~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKISDSKQLIA-SDDGLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC---CCCcEEEEEecCCCEEEE-EeCccEEeecccceeeEEee
Confidence 45678874 455455456789999999888642 2222 457889999999876665 5677777765422
Q ss_pred -------CCCceeEeCCCCCEEEEEcC------CCeEEEEECCceeeeecccCCCceEEEcCCCCEEEEE-cCCCcEEEE
Q psy16005 134 -------YEPSSISLDHEHGLVAVGGA------DSKISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVG-GADSKVHIY 199 (248)
Q Consensus 134 -------~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~ 199 (248)
..+..+.+.|+|++.++... .+.++..+.++.......-..++.++++++++.+..+ +..+.|+.|
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEe
Confidence 12456778889987776432 2234334455544444444456889999999866544 567889999
Q ss_pred EcCCCCCC--C--cc---cccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEEC
Q psy16005 200 ELNNKSLS--P--KA---ELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRV 244 (248)
Q Consensus 200 d~~~~~~~--~--~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 244 (248)
++...... . .. ..+..+....+++..+|.+.++.-..+.|..||-
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp 227 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 227 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence 87543211 1 11 1123455788999999997777666778888884
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.63 E-value=5.3e-06 Score=59.10 Aligned_cols=184 Identities=16% Similarity=0.142 Sum_probs=100.7
Q ss_pred ccCCcEEEEeCCCCCEEEEeC--C-----cEEEEEecCCCceeeeee------cCCcceEEEEECcCCcEEEEEccC---
Q psy16005 16 QRGQPIVLGGDPKGKNFLYTN--G-----NSVIIRNIENPAISDIYT------EHSCAVNVAKYSPSGFYIASGDIS--- 79 (248)
Q Consensus 16 ~~~~v~~~~~s~~~~~l~~~~--~-----~~v~v~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d--- 79 (248)
+.+.+...+|||||+.||... + ..|.+++..+++..+... ..........|+|+|+.|+.....
T Consensus 39 ~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 118 (281)
T d1k32a2 39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF 118 (281)
T ss_dssp SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS
T ss_pred CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCC
Confidence 345677899999999998763 1 258888888777654321 112345678899999998875332
Q ss_pred ---CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC-C------------cEEEEEc---------cCCC
Q psy16005 80 ---GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE-N------------GAKVSSL---------PIDY 134 (248)
Q Consensus 80 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~------------~~~i~~~---------~~~~ 134 (248)
..+...+...+... .. +...... .+.+++..++.... . ....... ....
T Consensus 119 ~~~~~~~~~~~~~~~~~--~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (281)
T d1k32a2 119 SSMTCLYRVENDGINFV--PL---NLGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 192 (281)
T ss_dssp TTCCEEEEEEGGGTEEE--EC---CSCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred ccceeeeeecCCCceeE--Ee---cCCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCcc
Confidence 23555555544421 11 1222223 34455544444321 1 1111111 1112
Q ss_pred CCceeEeCCCCCEEEEEcCC--CeEEEEE-CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCC
Q psy16005 135 EPSSISLDHEHGLVAVGGAD--SKISIVE-NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLS 207 (248)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~ 207 (248)
......+.++. .+.....+ ..|.++| .+.....+..........|+|||+.|+... ++.|+++|+.+++..
T Consensus 193 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 193 HVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE 266 (281)
T ss_dssp CCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE
T ss_pred ccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEe-CCEEEEEECCCCCEE
Confidence 22223333332 22223332 3466667 444444444333344457999999877644 678999999888753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.58 E-value=9.5e-06 Score=60.51 Aligned_cols=212 Identities=10% Similarity=0.074 Sum_probs=132.5
Q ss_pred EEEeCC---CCCEEEEeC--CcEEEEEecCCCceeeeeec-CCcceEEEEECc--CCcEEEEEccC--------------
Q psy16005 22 VLGGDP---KGKNFLYTN--GNSVIIRNIENPAISDIYTE-HSCAVNVAKYSP--SGFYIASGDIS-------------- 79 (248)
Q Consensus 22 ~~~~s~---~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~-~~~~v~~~~~s~--~~~~l~~~~~d-------------- 79 (248)
.+++.. ||++++... ++.|.+.|+++.+..+.+.. ....+..++..+ +-.+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455554 899999985 78999999999887665542 234567777655 44566665542
Q ss_pred ----CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCc---E-------------EEEEccCCCCCcee
Q psy16005 80 ----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENG---A-------------KVSSLPIDYEPSSI 139 (248)
Q Consensus 80 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~-------------~i~~~~~~~~~~~~ 139 (248)
+.+.+.|..+.+........ .....+.+++||+++++.+.+. . .+++++.. .
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ri-----e 240 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI-----E 240 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH-----H
T ss_pred hhcceEEEEEecCCceEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHh-----H
Confidence 23677888887765544443 3566789999999999887432 1 11221100 0
Q ss_pred EeCCCCCEEEEEcCCCeEEEEECC-----ceeeeecccCCCceEEEcCCCCEEEEEc-CCCcEEEEEcCCCCC-------
Q psy16005 140 SLDHEHGLVAVGGADSKISIVENG-----AKVSSLPIDYEPSSISLDHEHGLVAVGG-ADSKVHIYELNNKSL------- 206 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~v~i~d~~~~~~------- 206 (248)
.+.++|+.--. +.+.+.|.. ..+..++....+..+.++|||+++++++ .+.++.++|++.-..
T Consensus 241 ~av~~Gk~~ei----ngV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~ 316 (459)
T d1fwxa2 241 KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD 316 (459)
T ss_dssp HHHHHTCSEEE----TTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred HhhhcCCcEEe----CCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCC
Confidence 00111211111 234555622 3445677788899999999999888776 478999999964211
Q ss_pred CCc---ccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECC
Q psy16005 207 SPK---AELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVP 245 (248)
Q Consensus 207 ~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 245 (248)
... ......-....-+|...|.-..+---|..|.-|++.
T Consensus 317 ~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 317 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred ccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 000 111123345667898888655555678999999974
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=3.4e-05 Score=54.64 Aligned_cols=204 Identities=10% Similarity=-0.011 Sum_probs=127.2
Q ss_pred CCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCCCceee
Q psy16005 18 GQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVNKEHIL 94 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~ 94 (248)
..+.+++|.+.++.++.+. ++.|+..+++.......+......+.++++..-++.|+ +-...+.|.+.++......
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~- 114 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR- 114 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-
Confidence 3477899999888888774 78899988876665554544345688899987555555 5556789999998866532
Q ss_pred eeeccCCCCCeeEEEEecCCCEEEEEeCC--cEEEEEccCC------------CCCceeEeCCCCCEEE-EEcCCCeEEE
Q psy16005 95 KNEFHPIGGPIKDIAWSPDNQRMISIVEN--GAKVSSLPID------------YEPSSISLDHEHGLVA-VGGADSKISI 159 (248)
Q Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~i~~~~~~------------~~~~~~~~~~~~~~~~-~~~~~~~i~~ 159 (248)
......-..+..++++|...+++....+ ..+++....+ ..+..+++++.++.|. +-...+.|..
T Consensus 115 -~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~ 193 (263)
T d1npea_ 115 -VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (263)
T ss_dssp -EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence 2222223568899999988777766433 2345543322 2346778877766554 4456778888
Q ss_pred EE-CCceeeee-cccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 160 VE-NGAKVSSL-PIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 160 ~~-~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
.+ .+.....+ .....+..+++. +..|... ...+.|...|..+++...............++..+
T Consensus 194 ~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 194 LNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 77 33333322 222335667765 4445444 45678988998887765444323333444555444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.25 E-value=0.00041 Score=52.61 Aligned_cols=228 Identities=8% Similarity=-0.012 Sum_probs=121.2
Q ss_pred CcEEEEeCCCCCEEEEeC--C----cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccC-------------
Q psy16005 19 QPIVLGGDPKGKNFLYTN--G----NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDIS------------- 79 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------- 79 (248)
.+..+++|||+++++.+- + -.++++|+.+++.+...-. ......++|++|++.|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 345678899999999862 2 3899999999987642211 1122568899999877654322
Q ss_pred ---CeEEEEECCCCceeeeeeccCC--CCCeeEEEEecCCCEEEEEeCC----cEEEEEccCCCCC---------ceeE-
Q psy16005 80 ---GKVRIWDTVNKEHILKNEFHPI--GGPIKDIAWSPDNQRMISIVEN----GAKVSSLPIDYEP---------SSIS- 140 (248)
Q Consensus 80 ---g~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~----~~~i~~~~~~~~~---------~~~~- 140 (248)
..|..+.+.+........+... ...+..+..++++++++..... ...+|.++..... ..+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 2588888877654322333332 2345667789999998765422 2355554322110 0111
Q ss_pred --------eCCCCC-EEEEEc---CCCeEEEEECCce-----eeeecc-cCCCceEEEcCCCCEEEEEc-CCC--cEEEE
Q psy16005 141 --------LDHEHG-LVAVGG---ADSKISIVENGAK-----VSSLPI-DYEPSSISLDHEHGLVAVGG-ADS--KVHIY 199 (248)
Q Consensus 141 --------~~~~~~-~~~~~~---~~~~i~~~~~~~~-----~~~~~~-~~~~~~~~~s~~~~~l~~~~-~d~--~v~i~ 199 (248)
....+. +++... .++.|...+.... ...++. ...+..-.++..+.+|+... .++ .|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~ 364 (430)
T d1qfma1 285 NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (430)
T ss_dssp SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred ccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence 011111 222221 1234444431111 111221 12222223334445565543 443 58899
Q ss_pred EcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE--c--CCCeEEEEECCCCC
Q psy16005 200 ELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS--D--AHRKVVLYRVPDFE 248 (248)
Q Consensus 200 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~--~d~~i~vw~~~~~~ 248 (248)
+..+++...... ...+.+..+...++...+... + .=.++.-+|+.+++
T Consensus 365 ~~~~~~~~~~~~-~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 365 DLATGALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp ETTTCCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCCCcEEEecC-CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 998877643333 334556666656665544332 2 23788889988764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.24 E-value=0.00039 Score=51.69 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCCEEEEeC-C-----c------EEEEEecCCCceeeee---ecCCcceEEEEECcCCcEEEEEccC-Ce
Q psy16005 18 GQPIVLGGDPKGKNFLYTN-G-----N------SVIIRNIENPAISDIY---TEHSCAVNVAKYSPSGFYIASGDIS-GK 81 (248)
Q Consensus 18 ~~v~~~~~s~~~~~l~~~~-~-----~------~v~v~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d-g~ 81 (248)
.++.......+|+.++.|+ + + .+.+||..+++-.... ..+.....+.++.+++++++.|+.+ ..
T Consensus 20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 99 (387)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence 3445555667888888764 1 1 4779999887643321 1233334566788999999988655 58
Q ss_pred EEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeC
Q psy16005 82 VRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
+.+||..+........+.. ...-...+..+||+.++.++.
T Consensus 100 ~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~ 139 (387)
T d1k3ia3 100 TSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGS 139 (387)
T ss_dssp EEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCC
T ss_pred eeEecCccCcccccccccc-cccccceeeecCCceeeeccc
Confidence 9999998876543222222 222345677788888888764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.19 E-value=0.00035 Score=49.28 Aligned_cols=213 Identities=9% Similarity=-0.018 Sum_probs=128.4
Q ss_pred CCEEEEeCCcEEEEEecCCCcee-----eeeecCCcceEEEEECcCCcEEEEE-ccCCeEEEEECCCCceeeeeeccCCC
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAIS-----DIYTEHSCAVNVAKYSPSGFYIASG-DISGKVRIWDTVNKEHILKNEFHPIG 102 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (248)
|.+|+.+..+.|+-.+++..... ..+..+...+.+++|.+..+.|+.. ..++.|+..++...... ..+....
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~--~v~~~~~ 78 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDL 78 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTC
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE--EEEEecc
Confidence 46788888888888887654322 2233444567889999876666654 56688998888766532 2222223
Q ss_pred CCeeEEEEecCCCEEEEEeCCc--EEEEEccC----------CCCCceeEeCCCCCEEEEEcC---CCeEEEEE-CCcee
Q psy16005 103 GPIKDIAWSPDNQRMISIVENG--AKVSSLPI----------DYEPSSISLDHEHGLVAVGGA---DSKISIVE-NGAKV 166 (248)
Q Consensus 103 ~~v~~~~~~~~~~~l~~~~~~~--~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~-~~~~~ 166 (248)
..+.+++++.-+..|+.+.... +.+.+++. ...+..++++|...++..... ...|.-.+ .+...
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence 5688999988777777765433 34444332 134567778776665554322 22343334 33333
Q ss_pred eeec--ccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE-cCCCeEEEE
Q psy16005 167 SSLP--IDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS-DAHRKVVLY 242 (248)
Q Consensus 167 ~~~~--~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw 242 (248)
..+. .-..+..+++++.++.|..+ ...+.|...++......... .+. ....++++. +.+|+.. ...+.|...
T Consensus 159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~-~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGL-QYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-ECC-CSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE-CCC-CCcEEEEEE--CCEEEEEECCCCEEEEE
Confidence 3332 22346789999887777655 45678999998765442222 222 234677775 4455544 456888888
Q ss_pred ECCCC
Q psy16005 243 RVPDF 247 (248)
Q Consensus 243 ~~~~~ 247 (248)
|..++
T Consensus 235 ~~~~g 239 (263)
T d1npea_ 235 DLAIS 239 (263)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 87665
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.00064 Score=47.96 Aligned_cols=214 Identities=13% Similarity=0.009 Sum_probs=126.7
Q ss_pred EEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEc-cCCeEEEEECCCCce--eeeeeccCCCCCeeE
Q psy16005 31 NFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGD-ISGKVRIWDTVNKEH--ILKNEFHPIGGPIKD 107 (248)
Q Consensus 31 ~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~ 107 (248)
+|+.+....|+..++++.+....+. ....+.+++|++..+.|+-.. ..+.|.-.++..... ............+..
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g 81 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence 5777777778889998766555443 445678999998777666554 566777776653221 111222222356778
Q ss_pred EEEecCCCEEEEEeCCc--EEEEEccC----------CCCCceeEeCCCCCEEEEEc--CCCeEEEEE-CCceeeeec--
Q psy16005 108 IAWSPDNQRMISIVENG--AKVSSLPI----------DYEPSSISLDHEHGLVAVGG--ADSKISIVE-NGAKVSSLP-- 170 (248)
Q Consensus 108 ~~~~~~~~~l~~~~~~~--~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~~~-- 170 (248)
+++++.+..|+.+.... +.+.++.. ...+..++++|...++.... ..+.|.-.+ .+.....+.
T Consensus 82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~ 161 (266)
T d1ijqa1 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 161 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence 99988787777765443 34444432 23466778877655544433 334555555 444333332
Q ss_pred ccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcccc-cCCcCeEEEEEcCCCcEEEEE-cCCCeEEEEECCCC
Q psy16005 171 IDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKAEL-DHLGPVTDCSFSPSNEYLVAS-DAHRKVVLYRVPDF 247 (248)
Q Consensus 171 ~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~~ 247 (248)
.-..++.+++++.++.|..+ ...+.|...++........... .......++++. +.+|+.+ ..++.|...+..++
T Consensus 162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCC
Confidence 22456889999987766665 5567899999876543222211 122345677776 3445444 46678887776665
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.03 E-value=0.00092 Score=49.81 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=97.9
Q ss_pred EEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCC---------------eEEE-------------------
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISG---------------KVRI------------------- 84 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~i------------------- 84 (248)
.+.++|.++++...++.- ......++++++|+++++.+.+. .+.+
T Consensus 174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein 252 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 252 (459)
T ss_dssp EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence 456789888887766643 34566889999999998876431 1333
Q ss_pred ----EECCCCce-eeeeeccCCCCCeeEEEEecCCCEEEEEeC--CcEEEEEcc---------------------CCCCC
Q psy16005 85 ----WDTVNKEH-ILKNEFHPIGGPIKDIAWSPDNQRMISIVE--NGAKVSSLP---------------------IDYEP 136 (248)
Q Consensus 85 ----wd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~~~i~~~~---------------------~~~~~ 136 (248)
-|.+.... .....++. ......+..+|||+++++++. ..+.+.++. ....+
T Consensus 253 gV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP 331 (459)
T d1fwxa2 253 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 331 (459)
T ss_dssp TEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred CceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence 33332110 01111111 234567899999999999984 446777763 23345
Q ss_pred ceeEeCCCCCEEEEEcCCCeEEEEECC------------ceeeeecccCCCceEE------EcCCCCEEEEEc
Q psy16005 137 SSISLDHEHGLVAVGGADSKISIVENG------------AKVSSLPIDYEPSSIS------LDHEHGLVAVGG 191 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~~~~------~s~~~~~l~~~~ 191 (248)
...+|+..|+...+-.-|..|.-|+.. ..+..+..++.+..+. ..|+|++|++.+
T Consensus 332 Lht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 332 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 567888888777777889999999832 3345566666665553 368999999876
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.01 E-value=0.0018 Score=50.84 Aligned_cols=194 Identities=10% Similarity=0.070 Sum_probs=103.7
Q ss_pred cEEEEEecCCCceeeeeecCCcc---------eEEEEECcCCc---EEEEEccCCeEEEEECCCCceeeeeeccCCCC--
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCA---------VNVAKYSPSGF---YIASGDISGKVRIWDTVNKEHILKNEFHPIGG-- 103 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~---------v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-- 103 (248)
..+.-.|.++++..-.++..... ........+++ .++.++.+|.+.++|.++++.+..........
T Consensus 272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~ 351 (571)
T d2ad6a1 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence 36777899999887666532211 11122222443 46788899999999999988653222111000
Q ss_pred ---------------------------------C--eeEEEEecCCCEEEEEeCCcEEEEEccC-CCCC------ceeEe
Q psy16005 104 ---------------------------------P--IKDIAWSPDNQRMISIVENGAKVSSLPI-DYEP------SSISL 141 (248)
Q Consensus 104 ---------------------------------~--v~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~------~~~~~ 141 (248)
. =...+++|+...++....+....|.... .... .....
T Consensus 352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (571)
T d2ad6a1 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence 0 0125667777777666555443333211 1000 00000
Q ss_pred CCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 142 DHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
.+.... ......|.|.-+| +++.+.+.+......+-.++-.+.++++|+.||.++-+|.++++.+-+...+....-.
T Consensus 432 ~~~~~~-~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~ 510 (571)
T d2ad6a1 432 YPGPNG-PTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp EECTTS-TTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccccCC-cccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceec
Confidence 000000 0011234666777 6666666655544433223334567788999999999999999987655544322222
Q ss_pred EEEEcCCCc-EEEE
Q psy16005 220 DCSFSPSNE-YLVA 232 (248)
Q Consensus 220 ~~~~s~~~~-~l~~ 232 (248)
-+.|..||+ |+++
T Consensus 511 P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 511 PMTYSFKGKQYIGS 524 (571)
T ss_dssp CEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEE
Confidence 255666886 5544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.00 E-value=0.00044 Score=54.45 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=39.4
Q ss_pred CCEEEEeCCcEEEEEecCCCceeeeeecCC----cceEEEEECcCCcEEEEEc------cCCeEEEEECCCCceeeee
Q psy16005 29 GKNFLYTNGNSVIIRNIENPAISDIYTEHS----CAVNVAKYSPSGFYIASGD------ISGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 29 ~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 96 (248)
++.++...++.+.-.|.++++......... ..++..-.-.++. ++.+. .+|.|+-+|+++++.+.+.
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEE
Confidence 444444458999989999998765543211 1111110111344 44443 3688999999999977543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.86 E-value=0.00062 Score=53.49 Aligned_cols=194 Identities=12% Similarity=0.092 Sum_probs=102.3
Q ss_pred EEEEEecCCCceeeeeecCCcce---------EEEEECcCC---cEEEEEccCCeEEEEECCCCceeeeeeccCC-----
Q psy16005 39 SVIIRNIENPAISDIYTEHSCAV---------NVAKYSPSG---FYIASGDISGKVRIWDTVNKEHILKNEFHPI----- 101 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~~~v---------~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----- 101 (248)
.|.-.|+++++..-.++.....+ .-+....++ +.++.++.+|.+.++|..+++.+........
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 56677888888765554322211 111222233 3577789999999999999986643322110
Q ss_pred ---------------------------CC--CeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCC-----CE
Q psy16005 102 ---------------------------GG--PIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEH-----GL 147 (248)
Q Consensus 102 ---------------------------~~--~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~ 147 (248)
.+ .-...+++|+...++....+...++..........-.+.... ..
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 00 001345566665555554443333322211100000000000 00
Q ss_pred EEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcC
Q psy16005 148 VAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSP 225 (248)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~ 225 (248)
.-.+...|.+.-+| +++.+...+.......-.+.-.+.++++|+.||.++-||.++++.+-....+....-.-+.+..
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~ 510 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL 510 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence 00011235667777 6777777666555544334445668888999999999999999987555443221111245556
Q ss_pred CCc-EEEE
Q psy16005 226 SNE-YLVA 232 (248)
Q Consensus 226 ~~~-~l~~ 232 (248)
+|+ ||+.
T Consensus 511 dGkqyv~v 518 (560)
T d1kv9a2 511 AGRQYVAI 518 (560)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 886 5544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.82 E-value=0.0043 Score=48.97 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=41.1
Q ss_pred EEEEeC-CcEEEEEecCCCceeeeeecCCc-ceEEEEECc--CCcEEEEEcc------CCeEEEEECCCCceeeee
Q psy16005 31 NFLYTN-GNSVIIRNIENPAISDIYTEHSC-AVNVAKYSP--SGFYIASGDI------SGKVRIWDTVNKEHILKN 96 (248)
Q Consensus 31 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 96 (248)
.++.+. |+.|.-.|..+++....+..... .-..+.-+| -+..++.+.. .|.|+-+|.++++.+.+.
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 455555 89999999999998876642111 101111122 1334555543 489999999999987654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.0026 Score=44.67 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=111.1
Q ss_pred cCCcEEEEeCCCCCEEEEeC--CcEEEEEecCCCc----eeeeeecCCcceEEEEECcCCcEEE-EEccCCeEEEEECCC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN--GNSVIIRNIENPA----ISDIYTEHSCAVNVAKYSPSGFYIA-SGDISGKVRIWDTVN 89 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~--~~~v~v~~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~ 89 (248)
...+.+++|++.++.++.+. .+.|+..+++... ....+......+.++++.+.++.|+ +-...+.|.+.++..
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence 34577899999888888874 6677776665322 1222222334566788877555554 445667899999987
Q ss_pred CceeeeeeccCCCCCeeEEEEecCCCEEEEEeCC-cEEEEEccC------------CCCCceeEeCCCCCEEE-EEcCCC
Q psy16005 90 KEHILKNEFHPIGGPIKDIAWSPDNQRMISIVEN-GAKVSSLPI------------DYEPSSISLDHEHGLVA-VGGADS 155 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~i~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 155 (248)
.... ............++.+|...+|+....+ ..+|+.... -..+..+++++.++.|. +-...+
T Consensus 109 ~~~~--~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~ 186 (266)
T d1ijqa1 109 VKRK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 186 (266)
T ss_dssp SSEE--EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ceEE--EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence 6532 2333334668899999976666665432 223333322 23456778887666444 445667
Q ss_pred eEEEEE-CCceeeee-cc---cCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcc
Q psy16005 156 KISIVE-NGAKVSSL-PI---DYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKA 210 (248)
Q Consensus 156 ~i~~~~-~~~~~~~~-~~---~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~ 210 (248)
.|...+ .+.....+ .. ...+..+++. +..|..+ ..++.|.-.+..+++.....
T Consensus 187 ~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~ 245 (266)
T d1ijqa1 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (266)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence 888777 33322222 11 1234556665 3445544 46678888887777654333
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.72 E-value=0.0026 Score=49.82 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCCCeEEEEECCCCC
Q psy16005 194 SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAHRKVVLYRVPDFE 248 (248)
Q Consensus 194 ~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 248 (248)
|.+.-+|+.+++.+-+...+ .+...-..+-.+.++++++.||.++-+|.+|||
T Consensus 438 G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence 45677788777764333222 222211223346678889999999999999986
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.63 E-value=0.0085 Score=47.09 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=60.8
Q ss_pred CCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCc-EE
Q psy16005 154 DSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNE-YL 230 (248)
Q Consensus 154 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 230 (248)
.|.+.-+| +++.+...+...+...-.++..+.++++|+.||.++-+|.++++.+-....+....-.-+.|..+|+ |+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv 544 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 35666677 6777776665555443334456778888999999999999999987655544222112256677885 55
Q ss_pred EEEc---------------------CCCeEEEEECCC
Q psy16005 231 VASD---------------------AHRKVVLYRVPD 246 (248)
Q Consensus 231 ~~~~---------------------~d~~i~vw~~~~ 246 (248)
+... ..+.|.+|.|.+
T Consensus 545 ~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~Lp~ 581 (582)
T d1flga_ 545 GVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPS 581 (582)
T ss_dssp EEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECCC
T ss_pred EEEeCCCCccccccccccccccccCCCCEEEEEeCCC
Confidence 4332 135788888765
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.57 E-value=0.0019 Score=47.20 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=96.7
Q ss_pred eEEEEECcCCcEEEEEcc------------CCeEEEEECCCCceee-eeeccCC-----CCCeeEEEE--ecCCC-EEEE
Q psy16005 61 VNVAKYSPSGFYIASGDI------------SGKVRIWDTVNKEHIL-KNEFHPI-----GGPIKDIAW--SPDNQ-RMIS 119 (248)
Q Consensus 61 v~~~~~s~~~~~l~~~~~------------dg~i~iwd~~~~~~~~-~~~~~~~-----~~~v~~~~~--~~~~~-~l~~ 119 (248)
..++...|+|..+++++. .|.|.++|+.+.+... ...+.+. .-....+.. .++|+ +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 346777888877766532 4889999987654321 1111111 113345554 34565 4445
Q ss_pred EeC----CcEEEEEccCC---------------CCCceeEeCCCCCEEEEEcC-----------------CCeEEEEECC
Q psy16005 120 IVE----NGAKVSSLPID---------------YEPSSISLDHEHGLVAVGGA-----------------DSKISIVENG 163 (248)
Q Consensus 120 ~~~----~~~~i~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~ 163 (248)
... ..+.++++... ..+..+....++..+++-.. .+.+..|+.+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 432 23456665422 23456677777777777321 2234445555
Q ss_pred ceeeeecccCCCceEEEcCCCCEEEEE-cCCCcEEEEEcCCCCCCCcc-cccCCcCeEEEEEcC-CCcEEEEE
Q psy16005 164 AKVSSLPIDYEPSSISLDHEHGLVAVG-GADSKVHIYELNNKSLSPKA-ELDHLGPVTDCSFSP-SNEYLVAS 233 (248)
Q Consensus 164 ~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~ 233 (248)
+.......-..++.++++||+++|+++ +..+.|+.|++......... ...-.+.+-.+.+.+ +|.+.+++
T Consensus 197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 443333334557999999999977666 45678999999754432111 112334566778876 44444443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.47 E-value=0.0079 Score=42.48 Aligned_cols=215 Identities=15% Similarity=0.171 Sum_probs=130.4
Q ss_pred EEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCC
Q psy16005 22 VLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPI 101 (248)
Q Consensus 22 ~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (248)
+.-.+|..+.||.-++..+.++|+++.+.+..+.- ..+|.-=.|-.+. .|+... +..|+-|+++.... +...+..|
T Consensus 67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~-P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ-PVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCC-CEEEEECC
T ss_pred hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCC-chhhhhhc
Confidence 55678999999888888999999999888877744 4566666776543 454443 35799999965432 33333333
Q ss_pred ----CCCeeEEEEecCCCEEEEEe----CCc----EEEEEccCCCC----CceeEe---CCC-----CCEEEEE---cCC
Q psy16005 102 ----GGPIKDIAWSPDNQRMISIV----ENG----AKVSSLPIDYE----PSSISL---DHE-----HGLVAVG---GAD 154 (248)
Q Consensus 102 ----~~~v~~~~~~~~~~~l~~~~----~~~----~~i~~~~~~~~----~~~~~~---~~~-----~~~~~~~---~~~ 154 (248)
...|-....+++.+.++..+ +++ +.+|..+.... -...+| .-+ ..+++.+ ...
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 34677777888999887665 222 35666542210 011111 111 1123222 233
Q ss_pred CeEEEEECCce--------eeeecccC-------CCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcCeE
Q psy16005 155 SKISIVENGAK--------VSSLPIDY-------EPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGPVT 219 (248)
Q Consensus 155 ~~i~~~~~~~~--------~~~~~~~~-------~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~v~ 219 (248)
+++.+.+.+.. .+...... -+.++..|+....+..-+.-|.+++||+.++.++..-.. ....|.
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI-s~~~iF 301 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SGETIF 301 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec-CCCceE
Confidence 67788772221 11111111 145778888888888899999999999999998655442 344555
Q ss_pred EEEEcCCCcEEEEEcCCCeEEE
Q psy16005 220 DCSFSPSNEYLVASDAHRKVVL 241 (248)
Q Consensus 220 ~~~~s~~~~~l~~~~~d~~i~v 241 (248)
.-+-..+..-+++...+|.|.-
T Consensus 302 ~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 302 VTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEETTTTEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEECCCCeEEE
Confidence 5455555445666667776653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.35 E-value=0.02 Score=44.83 Aligned_cols=75 Identities=15% Similarity=0.026 Sum_probs=52.7
Q ss_pred EEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCc--eEEEcCCCC-EEEEEc
Q psy16005 117 MISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPS--SISLDHEHG-LVAVGG 191 (248)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~--~~~~s~~~~-~l~~~~ 191 (248)
.+.--..+..+|..+.......=.+.-.+.++++++.|+.++.+| +|+.+.++.....+. -+.+..+|+ ++++.+
T Consensus 460 ~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 460 LAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (573)
T ss_dssp EEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 333345677889887766554434455677888899999999999 899999888766543 356667787 555443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.25 E-value=0.0063 Score=47.77 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=49.0
Q ss_pred CeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccC---CcCeEEEEEcCCCc-
Q psy16005 155 SKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDH---LGPVTDCSFSPSNE- 228 (248)
Q Consensus 155 ~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~---~~~v~~~~~s~~~~- 228 (248)
|.+.-+| +++.+...+...+...-..+-.+.++++|+.||.++.||.++++.+-.+..+. ..+ +.|..||+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQ 533 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQ 533 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEE
Confidence 4566677 66777666655443333344457788889999999999999999875554432 222 44556786
Q ss_pred EEEE
Q psy16005 229 YLVA 232 (248)
Q Consensus 229 ~l~~ 232 (248)
|++.
T Consensus 534 Yv~v 537 (573)
T d1kb0a2 534 YVSV 537 (573)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.05 E-value=0.025 Score=39.92 Aligned_cols=204 Identities=12% Similarity=0.146 Sum_probs=123.0
Q ss_pred CcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCE
Q psy16005 37 GNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQR 116 (248)
Q Consensus 37 ~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 116 (248)
...+.+.|+.++..+..-.- .--+.-.+|..+.||.-+ ..++.++|+++.+.+....+. .+|.--.|-. .+.
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~---e~VvfWkWis-~~~ 115 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---DDVTFWKWIS-LNT 115 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---SCCCEEEESS-SSE
T ss_pred CceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---CCcEEEEecC-CCE
Confidence 45888899876554322211 112344789888887655 568999999999877655554 5677777764 567
Q ss_pred EEEEeCCcEEEEEccCCCCCc---------------eeEeCCCCCEEEEEc---C----CCeEEEEEC-CceeeeecccC
Q psy16005 117 MISIVENGAKVSSLPIDYEPS---------------SISLDHEHGLVAVGG---A----DSKISIVEN-GAKVSSLPIDY 173 (248)
Q Consensus 117 l~~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~----~~~i~~~~~-~~~~~~~~~~~ 173 (248)
|+...+..+.-|+++.+..+. ....+++.+.++..+ . .|.+.+|.. .+.-+.++.+.
T Consensus 116 L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGha 195 (327)
T d1utca2 116 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA 195 (327)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSE
T ss_pred EEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccccee
Confidence 888888888889886544332 234466677655432 2 256677773 33333333221
Q ss_pred CC-ceEEEc--CC-CCEEEEE---cCCCcEEEEEcCCCCC-CCc-------cccc---CCcCeEEEEEcCCCcEEEEEcC
Q psy16005 174 EP-SSISLD--HE-HGLVAVG---GADSKVHIYELNNKSL-SPK-------AELD---HLGPVTDCSFSPSNEYLVASDA 235 (248)
Q Consensus 174 ~~-~~~~~s--~~-~~~l~~~---~~d~~v~i~d~~~~~~-~~~-------~~~~---~~~~v~~~~~s~~~~~l~~~~~ 235 (248)
.. ..+.+. ++ ...++.+ ...+.++|.++..... ... ...+ -.+-.-++..|+.-..++..+.
T Consensus 196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK 275 (327)
T d1utca2 196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 275 (327)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec
Confidence 10 111111 11 1133333 2236799999876321 111 1111 2345678888988888999999
Q ss_pred CCeEEEEECCCCC
Q psy16005 236 HRKVVLYRVPDFE 248 (248)
Q Consensus 236 d~~i~vw~~~~~~ 248 (248)
-|.+++||++|+.
T Consensus 276 ~G~i~lyDleTgt 288 (327)
T d1utca2 276 YGYIHLYDLETGT 288 (327)
T ss_dssp TSEEEEEETTTCC
T ss_pred CcEEEEEEccccc
Confidence 9999999999873
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.96 E-value=0.056 Score=42.44 Aligned_cols=193 Identities=9% Similarity=0.015 Sum_probs=101.3
Q ss_pred EEEEEecCCCceeeeeecCC---------cceEEEEE-CcCC---cEEEEEccCCeEEEEECCCCceeeeeeccCCCCC-
Q psy16005 39 SVIIRNIENPAISDIYTEHS---------CAVNVAKY-SPSG---FYIASGDISGKVRIWDTVNKEHILKNEFHPIGGP- 104 (248)
Q Consensus 39 ~v~v~~~~~~~~~~~~~~~~---------~~v~~~~~-s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 104 (248)
.+.-.|+++++..-.++... ....-+.. ..+| +.++....+|.+.++|..+++.+...........
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~ 358 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccc
Confidence 57778999998876554211 11112221 2233 4678889999999999999986643322110000
Q ss_pred ------------------------------------eeEEEEecCCCEEEEEeCCcEEEEEccCCCCC-----c----ee
Q psy16005 105 ------------------------------------IKDIAWSPDNQRMISIVENGAKVSSLPIDYEP-----S----SI 139 (248)
Q Consensus 105 ------------------------------------v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-----~----~~ 139 (248)
-...+++|+...++....+....+........ . ..
T Consensus 359 ~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (596)
T d1w6sa_ 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (596)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccc
Confidence 01235666656555554443333322110000 0 00
Q ss_pred EeCCCCCEEEEEcCCCeEEEEE--CCceeeeecccCCCceEEEcCCCCEEEEEcCCCcEEEEEcCCCCCCCcccccCCcC
Q psy16005 140 SLDHEHGLVAVGGADSKISIVE--NGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKVHIYELNNKSLSPKAELDHLGP 217 (248)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~ 217 (248)
...+.+... .....|.|.-|| +++.+...........-.++-.+.+++.|+.||.++-||.++++.+-+...+....
T Consensus 439 ~~~~~g~~~-~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~ 517 (596)
T d1w6sa_ 439 YPGPKGDRQ-NYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (596)
T ss_dssp EECTTSBTT-TTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred ccCcccCcc-cCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcc
Confidence 111111000 000124566677 66666665555444433344456788889999999999999999875554432111
Q ss_pred eEEEEEcCCCc-EEEE
Q psy16005 218 VTDCSFSPSNE-YLVA 232 (248)
Q Consensus 218 v~~~~~s~~~~-~l~~ 232 (248)
-.=+.|..||+ |++.
T Consensus 518 a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 518 GYPMTYTHKGTQYVAI 533 (596)
T ss_dssp SCCEEEEETTEEEEEE
T ss_pred cCCeEEEECCEEEEEE
Confidence 11244556776 4543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.70 E-value=0.023 Score=41.65 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=48.9
Q ss_pred ceEEEcCCCCEEEEEcCC-CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC------CeEEEEECCCC
Q psy16005 176 SSISLDHEHGLVAVGGAD-SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH------RKVVLYRVPDF 247 (248)
Q Consensus 176 ~~~~~s~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~vw~~~~~ 247 (248)
...++.++|++++.|+.+ ..+.+||..+..-...........-...+..+||+.++.++.+ ..+.+||..+.
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence 456788999999988765 5799999987654322211122223456778899998888643 46888988664
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.51 E-value=0.083 Score=38.32 Aligned_cols=173 Identities=12% Similarity=0.210 Sum_probs=102.2
Q ss_pred CCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEec----C--CCEEEEEeC-----CcEEEEEccCC----
Q psy16005 69 SGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSP----D--NQRMISIVE-----NGAKVSSLPID---- 133 (248)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~----~--~~~l~~~~~-----~~~~i~~~~~~---- 133 (248)
+..+++.....+-|.+||+. |+.+. .+. .+.+..+..-. . ...++++++ ..+.+|.+...
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~--~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLH--SYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEE--ECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEE--ecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 45666666777779999996 55432 222 24555554332 2 223445542 23456665311
Q ss_pred --------------CCCceeEe--CCC-CC-EEEEEcCCCeEEEEE---CC------ceeeeecccCCCceEEEcCCCCE
Q psy16005 134 --------------YEPSSISL--DHE-HG-LVAVGGADSKISIVE---NG------AKVSSLPIDYEPSSISLDHEHGL 186 (248)
Q Consensus 134 --------------~~~~~~~~--~~~-~~-~~~~~~~~~~i~~~~---~~------~~~~~~~~~~~~~~~~~s~~~~~ 186 (248)
..+..+++ ++. +. ++++...+|.+..|. .+ +.++.+.....+..++++.....
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS 193 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence 12445565 554 44 455667788888775 12 34556677778889999999899
Q ss_pred EEEEcCCCcEEEEEcCCCCCCCcc-----cc-cCCcCeEEEEEcC--CCc-EEEEE-cCCCeEEEEECCC
Q psy16005 187 VAVGGADSKVHIYELNNKSLSPKA-----EL-DHLGPVTDCSFSP--SNE-YLVAS-DAHRKVVLYRVPD 246 (248)
Q Consensus 187 l~~~~~d~~v~i~d~~~~~~~~~~-----~~-~~~~~v~~~~~s~--~~~-~l~~~-~~d~~i~vw~~~~ 246 (248)
|.++-++.-|..++.......... .. ...+.+..|+.-. +++ ||+++ -.+++..+||..+
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999988877777776532211111 11 1345677777543 333 55544 4578999999865
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.91 E-value=0.22 Score=37.46 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=62.2
Q ss_pred cCCcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeeee--------cCCcceEEEEECcC---CcEEEEE-c------
Q psy16005 17 RGQPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIYT--------EHSCAVNVAKYSPS---GFYIASG-D------ 77 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~--------~~~~~v~~~~~s~~---~~~l~~~-~------ 77 (248)
-..+.+|+|.|||+++++-. .|.|++++..+++...... .-......++++|+ ..+++.. +
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 35788999999999999885 7999999877765432211 11346789999994 3444432 1
Q ss_pred cC----Ce--EEEEECCCCcee------eeeec-cCCCCCeeEEEEecCCCEEEEEeC
Q psy16005 78 IS----GK--VRIWDTVNKEHI------LKNEF-HPIGGPIKDIAWSPDNQRMISIVE 122 (248)
Q Consensus 78 ~d----g~--i~iwd~~~~~~~------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 122 (248)
.+ .. +..+........ ....+ .........|.|.|||.+.++.++
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 01 11 333333222110 00111 111234578999999988877764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.51 E-value=0.31 Score=36.29 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=41.0
Q ss_pred ceEEEEECcCCcEEEEE-ccC----CeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEe
Q psy16005 60 AVNVAKYSPSGFYIASG-DIS----GKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIV 121 (248)
Q Consensus 60 ~v~~~~~s~~~~~l~~~-~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 121 (248)
.+...++||++++++.+ +.. ..++++|+.+++.+. ..+.. .....++|.+|++.|+...
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~~--~~~~~~~W~~D~~~~~Y~~ 189 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLER--VKFSCMAWTHDGKGMFYNA 189 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEEE--ECSCCEEECTTSSEEEEEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-ccccc--ccccceEEcCCCCEEEEEE
Confidence 45567889999988753 333 369999999998653 22221 2235689999999887764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.94 E-value=0.5 Score=35.45 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=39.5
Q ss_pred cceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeecc------CCCCCeeEEEEecC
Q psy16005 59 CAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFH------PIGGPIKDIAWSPD 113 (248)
Q Consensus 59 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~ 113 (248)
...++++|.||++++++--..|.|++++..+++......+. .-......++|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45679999999998888656799999998777643222221 12356788999985
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.87 E-value=0.059 Score=42.20 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=54.1
Q ss_pred cEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeeeeccCCCCCeeEEEEecCCC-E
Q psy16005 38 NSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKNEFHPIGGPIKDIAWSPDNQ-R 116 (248)
Q Consensus 38 ~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 116 (248)
|.+.-+|+.+++..-....+ .++..-..+..+.++++|+.||.++.+|.++|+.+....+..-.. -.-+.|..+|+ +
T Consensus 466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV-SPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEEE
T ss_pred CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCEEE
Confidence 56777888888877666433 222222233466788889999999999999999988777654221 12266777885 4
Q ss_pred EEEE
Q psy16005 117 MISI 120 (248)
Q Consensus 117 l~~~ 120 (248)
++..
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.70 E-value=0.51 Score=34.46 Aligned_cols=185 Identities=8% Similarity=0.035 Sum_probs=90.2
Q ss_pred cCCcEEEEeCCCCCEEEEeCCcEEEEEecCC---------CceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEEC
Q psy16005 17 RGQPIVLGGDPKGKNFLYTNGNSVIIRNIEN---------PAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDT 87 (248)
Q Consensus 17 ~~~v~~~~~s~~~~~l~~~~~~~v~v~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 87 (248)
.....-++.++...++++|+...+.|..+.. ..........-..|..++|+.+ .|+.. .++.+..++.
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~ 112 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL 112 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence 3566778888887788877755677765431 0101111112235888999754 45443 4567888887
Q ss_pred CCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCCCCCceeEeCCCCCEEEEEcCCCeEEEEECCceee
Q psy16005 88 VNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPIDYEPSSISLDHEHGLVAVGGADSKISIVENGAKVS 167 (248)
Q Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (248)
..-... ........++..+.++|.. .++....+..-++.+... ...-.- ....
T Consensus 113 ~~l~~~--~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~----------------------~~~~~~--~~v~ 165 (381)
T d1xipa_ 113 EELSEF--RTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTK----------------------STKQLA--QNVT 165 (381)
T ss_dssp SSTTCE--EEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTC----------------------CEEEEE--ESEE
T ss_pred eccccc--cccccccccccceecCCce-eEEEecCCCEEEEEeccC----------------------cccccc--CCcc
Confidence 654322 1222234567777776642 222212222222222111 000000 0011
Q ss_pred eecccCCCceEEEcCCCCEEEEEcCCCcEEE-EEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEE
Q psy16005 168 SLPIDYEPSSISLDHEHGLVAVGGADSKVHI-YELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVAS 233 (248)
Q Consensus 168 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~v~i-~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 233 (248)
.+.......+++|++.|+.++++..++ ..+ -++.....+... ......|.++.|-.+..++++-
T Consensus 166 ~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p-~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 166 SFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEEL-PVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTS-CTTTSEEEEEEESSSSEEEEEE
T ss_pred eEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCC-cCCCcceeEEEEecCceEEEEE
Confidence 122334567788888888877764332 221 122221111111 1234467888998777766544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.95 Score=32.99 Aligned_cols=129 Identities=11% Similarity=0.042 Sum_probs=83.0
Q ss_pred CcEEEEeCCCCCEEEEeCCcEEEEEecCCCceeeeeecCCcceEEEEECcCCcEEEEEccCCeEEEEECCCCceeeee--
Q psy16005 19 QPIVLGGDPKGKNFLYTNGNSVIIRNIENPAISDIYTEHSCAVNVAKYSPSGFYIASGDISGKVRIWDTVNKEHILKN-- 96 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 96 (248)
.|..++|+.| .+++..++.+..++...-........-..++..+.++|. .++....+|.+.++++..++.....
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~ 163 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQN 163 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCC
Confidence 5788999744 577777777888887664444444444567888888875 4555667899999999887532111
Q ss_pred -eccCCCCCeeEEEEecCCCEEEEEeCCcEEEE-Ecc----------CCCCCceeEeCCCCCEEEEE
Q psy16005 97 -EFHPIGGPIKDIAWSPDNQRMISIVENGAKVS-SLP----------IDYEPSSISLDHEHGLVAVG 151 (248)
Q Consensus 97 -~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~-~~~----------~~~~~~~~~~~~~~~~~~~~ 151 (248)
.-..-.+.+.+++|++.|+.++++..+...+. ++. .+..+.++.|-.+..++++-
T Consensus 164 v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 164 VTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 00112467889999999999988765544332 221 23345677777666655543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.98 E-value=1.1 Score=32.17 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=96.5
Q ss_pred cEEEEeCCCCCEEEEeC-------------CcEEEEEecCCCceee-eee--cC-----CcceEEEEE--CcCCc-EEEE
Q psy16005 20 PIVLGGDPKGKNFLYTN-------------GNSVIIRNIENPAISD-IYT--EH-----SCAVNVAKY--SPSGF-YIAS 75 (248)
Q Consensus 20 v~~~~~s~~~~~l~~~~-------------~~~v~v~~~~~~~~~~-~~~--~~-----~~~v~~~~~--s~~~~-~l~~ 75 (248)
.-.+...|+|..+++++ .|.+.++|+.+.+... .+. +. .-....+.. .++++ +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 44688899998877653 2789999987654321 121 11 012234443 34554 3444
Q ss_pred E---ccCCeEEEEECCCCc--eeeeeecc-CCCCCeeEEEEecCCCEEEEEeC----------------CcEEEEEccC-
Q psy16005 76 G---DISGKVRIWDTVNKE--HILKNEFH-PIGGPIKDIAWSPDNQRMISIVE----------------NGAKVSSLPI- 132 (248)
Q Consensus 76 ~---~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~----------------~~~~i~~~~~- 132 (248)
. ....+|.+|++.... ......+. ........+++..++..+++-.. ....++..+.
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 3 345678888875443 22222222 12345789999999987777321 1123333322
Q ss_pred --------CCCCceeEeCCCCCEEEE-EcCCCeEEEEE-CC----ceeeeecccCCCceEEEcC-CCCEEEEE
Q psy16005 133 --------DYEPSSISLDHEHGLVAV-GGADSKISIVE-NG----AKVSSLPIDYEPSSISLDH-EHGLVAVG 190 (248)
Q Consensus 133 --------~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~----~~~~~~~~~~~~~~~~~s~-~~~~l~~~ 190 (248)
-..+..++++|+++.+++ -+..+.|+.|+ .+ .....+.....+-.+.+.+ +|.+.+.+
T Consensus 197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 234678899999886654 45677888887 21 1223334555667788876 45544443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.40 E-value=2.2 Score=30.63 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=96.3
Q ss_pred EEEeCCC---CCEEEEeC-CcEEEEEecCCCceeeeeecCCcceEEEEEC------cCCcEEEEEc-c-C--CeEEEEEC
Q psy16005 22 VLGGDPK---GKNFLYTN-GNSVIIRNIENPAISDIYTEHSCAVNVAKYS------PSGFYIASGD-I-S--GKVRIWDT 87 (248)
Q Consensus 22 ~~~~s~~---~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~-~-d--g~i~iwd~ 87 (248)
++-++|. ..+++... .+-|++||++ |+.++.+. .+.+..+..- ....-++.++ + + -+|.+|.+
T Consensus 30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~i 106 (353)
T d1h6la_ 30 AIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (353)
T ss_dssp EEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEE
T ss_pred eEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEe
Confidence 4556664 34555544 5569999985 77666553 3455555443 2222344444 2 2 36778877
Q ss_pred CCCce-eeeeecc-----CCCCCeeEEEE--ecC-CCEEEE-EeCCc-EEEEEcc----------------CCCCCceeE
Q psy16005 88 VNKEH-ILKNEFH-----PIGGPIKDIAW--SPD-NQRMIS-IVENG-AKVSSLP----------------IDYEPSSIS 140 (248)
Q Consensus 88 ~~~~~-~~~~~~~-----~~~~~v~~~~~--~~~-~~~l~~-~~~~~-~~i~~~~----------------~~~~~~~~~ 140 (248)
..... +...... .....++.+++ ++. +...+. ....+ +..|.+. ....+..+.
T Consensus 107 d~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCV 186 (353)
T d1h6la_ 107 DGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMA 186 (353)
T ss_dssp ETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEE
T ss_pred cCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEE
Confidence 53221 1111111 11234677777 554 444333 34344 3445442 234456777
Q ss_pred eCCCCCEEEEEcCCCeEEEEEC----Cc---eeeee---cccCCCceEEEc--CCCC-EEEEE-cCCCcEEEEEcCCC
Q psy16005 141 LDHEHGLVAVGGADSKISIVEN----GA---KVSSL---PIDYEPSSISLD--HEHG-LVAVG-GADSKVHIYELNNK 204 (248)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~----~~---~~~~~---~~~~~~~~~~~s--~~~~-~l~~~-~~d~~v~i~d~~~~ 204 (248)
++.+...|..+-++..+..++. .. .+... .+...+..+++- +++. +|+++ -.+++..+||..+.
T Consensus 187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 8888888888888877766651 11 11111 123345556543 3444 55544 45788999998764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.63 E-value=2.7 Score=27.93 Aligned_cols=147 Identities=10% Similarity=0.176 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCEEEEeC-CcEEEEEecCCCceeeee--ecC-------CcceEEEEE-CcCCcEEEEEcc-CCeEEEEE
Q psy16005 19 QPIVLGGDPKGKNFLYTN-GNSVIIRNIENPAISDIY--TEH-------SCAVNVAKY-SPSGFYIASGDI-SGKVRIWD 86 (248)
Q Consensus 19 ~v~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~--~~~-------~~~v~~~~~-s~~~~~l~~~~~-dg~i~iwd 86 (248)
+|.++++. +.+..++|+ .+...+|-++.|+..... ... .+-|..+.+ .++.+-++++.- .|.++|++
T Consensus 105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t 183 (313)
T d2hu7a1 105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 183 (313)
T ss_dssp EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence 45555554 233444453 667777777777654321 111 122333333 233334555554 67777777
Q ss_pred CCCCceeeeeeccCCCCCeeEEEEecCCCEEEEEeCCcEEEEEccCC------CCCceeE---eCCCCCEEEEEcCCCeE
Q psy16005 87 TVNKEHILKNEFHPIGGPIKDIAWSPDNQRMISIVENGAKVSSLPID------YEPSSIS---LDHEHGLVAVGGADSKI 157 (248)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~i~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~i 157 (248)
...+..-....+.+ ..|.+=-=++-..+.++..-..-.+-++..+ ..+..+. +.|++++++.+-.||.-
T Consensus 184 pkeGS~~~ay~~~g--nKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s 261 (313)
T d2hu7a1 184 SGEGSFSSASISPG--MKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS 261 (313)
T ss_dssp CSSEEEEEEEECTT--SCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred CCCCcccceeEccC--ceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCch
Confidence 66554322222221 1121100011112222221111111122221 2344555 78999888888889998
Q ss_pred EEEECCceeee
Q psy16005 158 SIVENGAKVSS 168 (248)
Q Consensus 158 ~~~~~~~~~~~ 168 (248)
.++..++.+..
T Consensus 262 ~lF~nGk~in~ 272 (313)
T d2hu7a1 262 AVFIDGERVEA 272 (313)
T ss_dssp EEEETTEEECC
T ss_pred heeecceEecC
Confidence 88888877643
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.65 E-value=5.7 Score=26.75 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=33.3
Q ss_pred CCCEEEEEcCC-----CcEEEEEcCCCCCCCcccccCCcCeEEEEEcCCCcEEEEEcCC-----CeEEEEECCCC
Q psy16005 183 EHGLVAVGGAD-----SKVHIYELNNKSLSPKAELDHLGPVTDCSFSPSNEYLVASDAH-----RKVVLYRVPDF 247 (248)
Q Consensus 183 ~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~vw~~~~~ 247 (248)
++.+++.|+.+ .....||..+.+............-.+++. .+++.++.|+.+ ..+.+||+.+.
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence 45566666544 357788877655322111111111112222 367877777654 34788988764
|