Psyllid ID: psy16019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTIR
Secondary Structure (PSIPRED)
ccccccEEEEEccccEEEEEEcccHHEEEEEcccccccEEEEEEEccEEEEEEccccEEEEEccccccccccccEEEEEccccccEEEEEEEccEEEEEEccEEEEEEcccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccEEEEEccHHHHHHHHccccccccEEEEEEEccEEEEEEcccEEEEEEEcccccccccccEEEEcccccccEEEEEEEccEEEEEEccEEEEEccccEEEEEEEEEc
Coil and Loop (DISEMBL)
mtsvlptmwlgsqngsvFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALadgsvaifrrgpdgqwdlskyhtvtlglphhsVRSLAAVYNKVWcgyknkihvvdpksldvirpvtir
Flexible Loop (DISEMBL)
mtsvlptmwlgsqngSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGyknkihvvdpksldvirpvtir
Low Complexity Region (SEG)
MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTIR
Disordered region (IsUnstruct)
*****PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIR*****
Disordered Region (DISOPRED)
**SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVT**
Disordered Region (DISEMBL)
MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTIR
Disordered Region (DISPRO)
***VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q58A65	1321	C-Jun-amino-terminal kina	no	N/A	0.942	0.086	0.657	8e-47
O60271	1321	C-Jun-amino-terminal kina	yes	N/A	0.942	0.086	0.657	8e-47
Q9UPT6	1336	C-Jun-amino-terminal kina	no	N/A	0.933	0.084	0.654	1e-46
Q9ESN9	1337	C-Jun-amino-terminal kina	no	N/A	0.933	0.084	0.646	2e-45
Q29EP6	1235	JNK-interacting protein 3	yes	N/A	0.950	0.093	0.539	2e-35
Q9GQF1	1227	JNK-interacting protein 3	yes	N/A	0.950	0.093	0.539	2e-35
P34609	1157	JNK-interacting protein O	yes	N/A	0.958	0.100	0.431	5e-28
Q96PE2	2063	Rho guanine nucleotide ex	no	N/A	0.892	0.052	0.281	5e-11
Q80U35	2057	Rho guanine nucleotide ex	no	N/A	0.892	0.052	0.272	1e-10
O15013	1369	Rho guanine nucleotide ex	no	N/A	0.842	0.074	0.284	2e-05

>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus GN=Spag9 PE=1 SV=2

 Score =  185 bits (469), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query: 1    MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
            M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct: 965  MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 1024

Query: 61   FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
            F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI+VV PK++ +
Sbjct: 1025 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 1078

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module.
Mus musculus (taxid: 10090)

>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens GN=SPAG9 PE=1 SV=4

 Score =  185 bits (469), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query: 1    MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
            M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct: 965  MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 1024

Query: 61   FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
            F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI+VV PK++ +
Sbjct: 1025 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 1078

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. Isoform 5 may play a role in spermatozoa-egg-interaction.

Homo sapiens (taxid: 9606)

>sp|Q9UPT6|JIP3_HUMAN C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens GN=MAPK8IP3 PE=1 SV=3

 Score =  184 bits (468), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/113 (65%), Positives = 98/113 (86%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            +S  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 965  SSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1024

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 1025 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1077

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins.

Homo sapiens (taxid: 9606)

>sp|Q9ESN9|JIP3_MOUSE C-Jun-amino-terminal kinase-interacting protein 3 OS=Mus musculus GN=Mapk8ip3 PE=1 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/113 (64%), Positives = 97/113 (85%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            +S  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 966  SSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1025

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A V ++VWCGYKNK+HV+ PK++ +
Sbjct: 1026 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVNDRVWCGYKNKVHVIQPKTMQI 1078

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins.

Mus musculus (taxid: 10090)

>sp|Q29EP6|JIP3_DROPS JNK-interacting protein 3 OS=Drosophila pseudoobscura pseudoobscura GN=syd PE=3 SV=2

 Score =  147 bits (371), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/115 (53%), Positives = 85/115 (73%)

Query: 1    MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
            MTSV PTMW+G+Q+G ++VHS V +W  CLH + L D+VL IVHV+ RVV ALA+  +A+
Sbjct: 919  MTSVGPTMWMGAQDGWLYVHSGVGRWHECLHRVLLPDAVLAIVHVEARVVVALANAQLAV 978

Query: 61   FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVI 115
            FRR  DGQWDL+ YH VTLG  +HS+R L     ++W  ++NKI +VDP SL+++
Sbjct: 979  FRRQTDGQWDLNSYHLVTLGDRNHSIRCLCVAGERIWAAHRNKIFIVDPISLNIV 1033

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK-signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins. Syd is required for efficient kinesin-I mediated axonal transport.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9GQF1|JIP3_DROME JNK-interacting protein 3 OS=Drosophila melanogaster GN=syd PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/115 (53%), Positives = 86/115 (74%)

Query: 1    MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
            M+SV PTMWLG+Q+G ++VHS+V +W  CLH + L D+VL IVHV+ RVV ALA+  +A+
Sbjct: 911  MSSVGPTMWLGAQDGWLYVHSSVGRWHECLHRVLLPDAVLAIVHVEARVVVALANAQLAV 970

Query: 61   FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVI 115
            FRR  DGQWDL+ YH VTLG  +HS+R L     ++W  ++NKI +VDP SL+++
Sbjct: 971  FRRQTDGQWDLNSYHLVTLGDRNHSIRCLCVAGERIWAAHRNKIFIVDPVSLNIV 1025

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK-signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins. Syd is required for efficient kinesin-I mediated axonal transport.

Drosophila melanogaster (taxid: 7227)

>sp|P34609|JIP_CAEEL JNK-interacting protein OS=Caenorhabditis elegans GN=unc-16 PE=1 SV=3

 Score =  122 bits (307), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/116 (43%), Positives = 79/116 (68%)

Query: 1   MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
           M+  LPT+W+G QN  +++HSAV+ W++CL  I++ D+VL+IVH + R+  ALA+G++AI
Sbjct: 813 MSGALPTVWMGGQNQYIYIHSAVTAWKQCLRRIKMPDAVLSIVHYKSRIFAALANGTIAI 872

Query: 61  FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIR 116
           F R   G+W    YH++ +G    SVRSL  V   +W  YKN + V+D +SL +++
Sbjct: 873 FHRNKHGEWSDEGYHSLRVGSATSSVRSLCLVSTNIWATYKNCVVVLDAESLQIVK 928

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of synaptic vesicle transport, through interations with the JNK-signaling components and motor proteins. Binds specific components of the JNK signaling pathway namely jnk-1, jkk-1 and sek-1. Associates with components of the motor protein, kinesin-1. Pre-assembled unc-16 scaffolding complexes are then transported as a cargo of kinesin, to the required subcellular location.

Caenorhabditis elegans (taxid: 6239)

>sp|Q96PE2|ARHGH_HUMAN Rho guanine nucleotide exchange factor 17 OS=Homo sapiens GN=ARHGEF17 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 7    TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVHVQGRVVCALADGSVAIFRRG 64
            ++WLG+++G V V+ +    R   +S++L+   SV  I+++  +V  +LA+G + +++R 
Sbjct: 1740 SVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNQVFVSLANGELVVYQRE 1799

Query: 65   PDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
                WD   + +VTLG     +  + +V  ++WCG +N++ V+ P +L +
Sbjct: 1800 AGHFWDPQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQL 1849

Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPases.

Homo sapiens (taxid: 9606)

>sp|Q80U35|ARHGH_MOUSE Rho guanine nucleotide exchange factor 17 OS=Mus musculus GN=Arhgef17 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 65/110 (59%), Gaps = 2/110 (1%)

Query: 7    TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVHVQGRVVCALADGSVAIFRRG 64
            ++WLG+++G V V+ +    R   +S++L+   SV  I+++  +V  +LA+G + +++R 
Sbjct: 1734 SVWLGTEDGCVHVYQSSDSIRDRRNSMKLQHAASVTCILYLNNKVFVSLANGELVVYQRE 1793

Query: 65   PDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
                WD   + ++TLG     +  + +V  ++WCG +N++ V+ P +L +
Sbjct: 1794 AGRFWDPQNFKSMTLGSQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQL 1843

Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPases.

Mus musculus (taxid: 10090)

>sp|O15013|ARHGA_HUMAN Rho guanine nucleotide exchange factor 10 OS=Homo sapiens GN=ARHGEF10 PE=1 SV=4

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 3    SVLPTMWLGSQNGSVFVH--SAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCALADGSVA 59
            S +PT+ +G++ GS+ ++  S  S+  R  H     K +V+++      +   L +G+VA
Sbjct: 986  SDVPTICVGTEEGSISIYKSSQGSKKVRLQHFFTPEKSTVMSLACTSQSLYAGLVNGAVA 1045

Query: 60   IFRRGPDGQWDLSKYHTVTLG-LPHHSVRSLAAVYNKVWCGYKNKIHVV 107
             + R PDG WD      + LG LP   VRSL  + + +W     ++ ++
Sbjct: 1046 SYARAPDGSWDSEPQKVIKLGVLP---VRSLLMMEDTLWAASGGQVFII 1091

May play a role in developmental myelination of peripheral nerves.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
260833498	1333	hypothetical protein BRAFLDRAFT_117085 [	0.942	0.085	0.684	2e-47
395515729	1302	PREDICTED: c-Jun-amino-terminal kinase-i	0.933	0.086	0.663	1e-45
395515721	1296	PREDICTED: c-Jun-amino-terminal kinase-i	0.933	0.087	0.663	1e-45
348562165	1321	PREDICTED: c-Jun-amino-terminal kinase-i	0.942	0.086	0.666	1e-45
348562163	1308	PREDICTED: c-Jun-amino-terminal kinase-i	0.942	0.087	0.666	1e-45
395515727	1310	PREDICTED: c-Jun-amino-terminal kinase-i	0.933	0.086	0.663	1e-45
334333782	1304	PREDICTED: c-Jun-amino-terminal kinase-i	0.933	0.086	0.663	1e-45
326672144	1134	PREDICTED: c-Jun-amino-terminal kinase-i	0.942	0.100	0.692	1e-45
395515719	1333	PREDICTED: c-Jun-amino-terminal kinase-i	0.933	0.084	0.663	1e-45
334333784	1298	PREDICTED: c-Jun-amino-terminal kinase-i	0.933	0.087	0.663	1e-45

>gi|260833498|ref|XP_002611694.1| hypothetical protein BRAFLDRAFT_117085 [Branchiostoma floridae] gi|229297065|gb|EEN67704.1| hypothetical protein BRAFLDRAFT_117085 [Branchiostoma floridae]

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/114 (68%), Positives = 100/114 (87%)

Query: 1    MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
            M+SVLPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDSVL+IVHV+GRV+ ALADG++A+
Sbjct: 947  MSSVLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSVLSIVHVKGRVLVALADGTLAV 1006

Query: 61   FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
            F R  DGQWDL+ YH + LG PHHS+R +  VY+KVWCGY+NKIHVV PK+L +
Sbjct: 1007 FHRAADGQWDLTNYHLLDLGKPHHSIRCMVVVYDKVWCGYRNKIHVVQPKTLKI 1060

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395515729|ref|XP_003762052.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3 isoform 6 [Sarcophilus harrisii]

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 98/113 (86%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            TS  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 933  TSAAPTMWLGAQNGWLYVHSAVTNWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 992

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 993  HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1045

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395515721|ref|XP_003762048.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3 isoform 2 [Sarcophilus harrisii]

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 98/113 (86%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            TS  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 927  TSAAPTMWLGAQNGWLYVHSAVTNWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 986

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 987  HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1039

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348562165|ref|XP_003466881.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 4 isoform 2 [Cavia porcellus]

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/114 (66%), Positives = 100/114 (87%)

Query: 1    MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
            M+SVLPTMWLG+QNG ++VHS+V+QWRRCLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct: 952  MSSVLPTMWLGAQNGCLYVHSSVAQWRRCLHSIRLKDSILSIVHVKGIVLVALADGTLAI 1011

Query: 61   FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
            F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NK++VV PK++ +
Sbjct: 1012 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKVYVVQPKAMRI 1065

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348562163|ref|XP_003466880.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 4 isoform 1 [Cavia porcellus]

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/114 (66%), Positives = 100/114 (87%)

Query: 1    MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
            M+SVLPTMWLG+QNG ++VHS+V+QWRRCLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct: 952  MSSVLPTMWLGAQNGCLYVHSSVAQWRRCLHSIRLKDSILSIVHVKGIVLVALADGTLAI 1011

Query: 61   FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
            F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NK++VV PK++ +
Sbjct: 1012 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKVYVVQPKAMRI 1065

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395515727|ref|XP_003762051.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3 isoform 5 [Sarcophilus harrisii]

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 98/113 (86%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            TS  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 941  TSAAPTMWLGAQNGWLYVHSAVTNWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1000

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 1001 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1053

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334333782|ref|XP_003341765.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3 [Monodelphis domestica]

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 98/113 (86%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            TS  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 935  TSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 994

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 995  HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1047

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326672144|ref|XP_002663916.2| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 4-like [Danio rerio]

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/114 (69%), Positives = 99/114 (86%)

Query: 1   MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
           M+SVLPTMWLG+QNG V+VHS+V+QWR+CLHSI+LKDSVL IVHV+GRV+ ALADG++AI
Sbjct: 782 MSSVLPTMWLGAQNGCVYVHSSVAQWRKCLHSIKLKDSVLGIVHVKGRVLVALADGTLAI 841

Query: 61  FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
           F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI VV PK++ +
Sbjct: 842 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTMVHDKVWCGYRNKIFVVHPKAMKI 895

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395515719|ref|XP_003762047.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3 isoform 1 [Sarcophilus harrisii]

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 98/113 (86%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            TS  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 964  TSAAPTMWLGAQNGWLYVHSAVTNWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1023

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 1024 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1076

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334333784|ref|XP_003341766.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3 [Monodelphis domestica]

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 98/113 (86%)

Query: 2    TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
            TS  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct: 929  TSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 988

Query: 62   RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct: 989  HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1041

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
RGD|1311289	404	Spag9 "sperm associated antige	0.942	0.282	0.657	5.2e-42
UNIPROTKB|Q9UPT6	1336	MAPK8IP3 "C-Jun-amino-terminal	0.933	0.084	0.654	4.2e-41
UNIPROTKB|E1BN82	1328	MAPK8IP3 "Uncharacterized prot	0.933	0.085	0.654	5.4e-41
UNIPROTKB|F1MZ69	1177	SPAG9 "Uncharacterized protein	0.942	0.096	0.657	6.9e-41
UNIPROTKB|O60271	1321	SPAG9 "C-Jun-amino-terminal ki	0.942	0.086	0.657	8.7e-41
MGI|MGI:1918084	1321	Spag9 "sperm associated antige	0.942	0.086	0.657	8.7e-41
UNIPROTKB|F1PK77	1326	SPAG9 "Uncharacterized protein	0.942	0.085	0.657	8.7e-41
UNIPROTKB|E1BSB9	1339	MAPK8IP3 "Uncharacterized prot	0.933	0.084	0.663	3e-40
ZFIN|ZDB-GENE-070820-7	1289	spag9a "sperm associated antig	0.958	0.089	0.612	3.6e-40
MGI|MGI:1353598	1337	Mapk8ip3 "mitogen-activated pr	0.933	0.084	0.646	3.9e-40

RGD|1311289 Spag9 "sperm associated antigen 9" [Rattus norvegicus (taxid:10116)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query:     1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
             M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct:   193 MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 252

Query:    61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI+VV PK++ +
Sbjct:   253 FHRGLDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 306

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9UPT6 MAPK8IP3 "C-Jun-amino-terminal kinase-interacting protein 3" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 4.2e-41, P = 4.2e-41
 Identities = 74/113 (65%), Positives = 98/113 (86%)

Query:     2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
             +S  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct:   965 SSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1024

Query:    62 RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
              RG DGQWDLS YH + LG PHHS+R +A VY++VWCGYKNK+HV+ PK++ +
Sbjct:  1025 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVYDRVWCGYKNKVHVIQPKTMQI 1077

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0060425 "lung morphogenesis" evidence=IEA

GO:0000139 "Golgi membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0046328 "regulation of JNK cascade" evidence=ISS

GO:0019901 "protein kinase binding" evidence=ISS

GO:0019894 "kinesin binding" evidence=ISS

GO:0005078 "MAP-kinase scaffold activity" evidence=ISS

UNIPROTKB|E1BN82 MAPK8IP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 448 (162.8 bits), Expect = 5.4e-41, P = 5.4e-41
 Identities = 74/113 (65%), Positives = 98/113 (86%)

Query:     2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
             TS  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct:   957 TSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1016

Query:    62 RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
              RG DGQWDLS YH + LG PHHS+R +A V+++VWCGYKNK+HV+ PK++ +
Sbjct:  1017 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVHDRVWCGYKNKVHVIQPKTMQI 1069

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0060425 "lung morphogenesis" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1MZ69 SPAG9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 446 (162.1 bits), Expect = 6.9e-41, P = 6.9e-41
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query:     1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
             M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct:   808 MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 867

Query:    61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI+VV PK++ +
Sbjct:   868 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 921

GO:0090074 "negative regulation of protein homodimerization activity" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0051146 "striated muscle cell differentiation" evidence=IEA

GO:0048273 "mitogen-activated protein kinase p38 binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|O60271 SPAG9 "C-Jun-amino-terminal kinase-interacting protein 4" [Homo sapiens (taxid:9606)]

 Score = 446 (162.1 bits), Expect = 8.7e-41, P = 8.7e-41
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query:     1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
             M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct:   965 MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 1024

Query:    61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI+VV PK++ +
Sbjct:  1025 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 1078

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0048273 "mitogen-activated protein kinase p38 binding" evidence=IEA

GO:0051146 "striated muscle cell differentiation" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0090074 "negative regulation of protein homodimerization activity" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0007283 "spermatogenesis" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0042692 "muscle cell differentiation" evidence=TAS

GO:0051149 "positive regulation of muscle cell differentiation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1918084 Spag9 "sperm associated antigen 9" [Mus musculus (taxid:10090)]

 Score = 446 (162.1 bits), Expect = 8.7e-41, P = 8.7e-41
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query:     1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
             M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct:   965 MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 1024

Query:    61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI+VV PK++ +
Sbjct:  1025 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 1078

GO:0000187 "activation of MAPK activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0007257 "activation of JUN kinase activity" evidence=IDA

GO:0008432 "JUN kinase binding" evidence=IDA

GO:0019894 "kinesin binding" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=IGI

GO:0045666 "positive regulation of neuron differentiation" evidence=IMP

GO:0048273 "mitogen-activated protein kinase p38 binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051146 "striated muscle cell differentiation" evidence=IGI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0090074 "negative regulation of protein homodimerization activity" evidence=IDA

UNIPROTKB|F1PK77 SPAG9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 446 (162.1 bits), Expect = 8.7e-41, P = 8.7e-41
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query:     1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
             M+S+LPTMWLG+QNG ++VHS+V+QWR+CLHSI+LKDS+L+IVHV+G V+ ALADG++AI
Sbjct:   968 MSSLLPTMWLGAQNGCLYVHSSVAQWRKCLHSIKLKDSILSIVHVKGIVLVALADGTLAI 1027

Query:    61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
             F RG DGQWDLS YH + LG PHHS+R +  V++KVWCGY+NKI+VV PK++ +
Sbjct:  1028 FHRGVDGQWDLSNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYVVQPKAMKI 1081

GO:0090074 "negative regulation of protein homodimerization activity" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0051146 "striated muscle cell differentiation" evidence=IEA

GO:0048273 "mitogen-activated protein kinase p38 binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BSB9 MAPK8IP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 441 (160.3 bits), Expect = 3.0e-40, P = 3.0e-40
 Identities = 75/113 (66%), Positives = 96/113 (84%)

Query:     2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
             TS  PTMWLG+QNG ++VHSAVS W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct:   970 TSAAPTMWLGAQNGWLYVHSAVSNWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1029

Query:    62 RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
              RG D QWDLS YH + LG  HHS+R +A VY++VWCGYKNKIHV+ PK++ +
Sbjct:  1030 HRGEDRQWDLSNYHLMDLGHTHHSIRCMAVVYDRVWCGYKNKIHVIQPKTMQI 1082

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0060425 "lung morphogenesis" evidence=IEA

ZFIN|ZDB-GENE-070820-7 spag9a "sperm associated antigen 9a" [Danio rerio (taxid:7955)]

 Score = 440 (159.9 bits), Expect = 3.6e-40, P = 3.6e-40
 Identities = 71/116 (61%), Positives = 100/116 (86%)

Query:     1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAI 60
             M+S LPTMWLG+QNG ++VHS+V++WR+CLH+++LKDS+LNIVHV+GRV+ ALADG++AI
Sbjct:   941 MSSALPTMWLGAQNGCLYVHSSVARWRKCLHAVKLKDSILNIVHVKGRVLVALADGTLAI 1000

Query:    61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIR 116
             F RG D QWDL+ YH + LG PHHS+R +  V++KVWCGY+NKI+++ PK++ + R
Sbjct:  1001 FHRGLDSQWDLTNYHLLDLGRPHHSIRCMTVVHDKVWCGYRNKIYIIQPKAMKIER 1056

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1353598 Mapk8ip3 "mitogen-activated protein kinase 8 interacting protein 3" [Mus musculus (taxid:10090)]

 Score = 440 (159.9 bits), Expect = 3.9e-40, P = 3.9e-40
 Identities = 73/113 (64%), Positives = 97/113 (85%)

Query:     2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIF 61
             +S  PTMWLG+QNG ++VHSAV+ W++CLHSI+LKDSVL++VHV+GRV+ ALADG++AIF
Sbjct:   966 SSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVALADGTLAIF 1025

Query:    62 RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDV 114
              RG DGQWDLS YH + LG PHHS+R +A V ++VWCGYKNK+HV+ PK++ +
Sbjct:  1026 HRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVNDRVWCGYKNKVHVIQPKTMQI 1078

GO:0000139 "Golgi membrane" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005078 "MAP-kinase scaffold activity" evidence=IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005790 "smooth endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007254 "JNK cascade" evidence=IDA

GO:0007257 "activation of JUN kinase activity" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

GO:0007585 "respiratory gaseous exchange" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0008432 "JUN kinase binding" evidence=IPI

GO:0009791 "post-embryonic development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019894 "kinesin binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030425 "dendrite" evidence=IDA

GO:0030673 "axolemma" evidence=IDA

GO:0030900 "forebrain development" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=ISO;IPI

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=ISO

GO:0043507 "positive regulation of JUN kinase activity" evidence=IDA

GO:0045666 "positive regulation of neuron differentiation" evidence=ISO

GO:0046328 "regulation of JNK cascade" evidence=IDA

GO:0048286 "lung alveolus development" evidence=IMP

GO:0060425 "lung morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29EP6	JIP3_DROPS	No assigned EC number	0.5391	0.9504	0.0931	yes	N/A
Q9GQF1	JIP3_DROME	No assigned EC number	0.5391	0.9504	0.0937	yes	N/A
O60271	JIP4_HUMAN	No assigned EC number	0.6578	0.9421	0.0862	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG3522|consensus	925		99.56
KOG3522|consensus	925		99.27
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.54
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.46
KOG0274|consensus	537		98.45
PTZ00421	493	coronin; Provisional	98.3
KOG0318|consensus	603		98.19
KOG1036|consensus	323		98.18
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.17
KOG0315|consensus	311		98.17
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.16
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.1
KOG1036|consensus	323		98.1
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.09
KOG0266|consensus	456		98.08
PTZ00420	568	coronin; Provisional	98.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.02
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.99
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.89
KOG0296|consensus	399		97.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.85
KOG0316|consensus	307		97.8
PLN00181	793	protein SPA1-RELATED; Provisional	97.78
KOG2077|consensus	832		97.75
KOG0279|consensus	315		97.75
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.71
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.67
KOG0274|consensus	537		97.62
KOG1539|consensus	910		97.6
KOG0647|consensus	347		97.59
PLN00181	793	protein SPA1-RELATED; Provisional	97.58
KOG0646|consensus	476		97.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.53
KOG0294|consensus	362		97.52
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.51
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	97.51
KOG0291|consensus	893		97.48
KOG1446|consensus	311		97.47
KOG0273|consensus	524		97.4
KOG0275|consensus	508		97.32
KOG0291|consensus	893		97.26
KOG0279|consensus	315		97.19
KOG4547|consensus	541		97.19
KOG1539|consensus	910		97.17
KOG0269|consensus	839		97.16
KOG0310|consensus	487		97.16
PTZ00420	568	coronin; Provisional	97.15
PTZ00421	493	coronin; Provisional	97.14
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.14
KOG0315|consensus	311		97.09
KOG0649|consensus	325		97.08
KOG0646|consensus	476		97.06
KOG2321|consensus	703		97.06
KOG0310|consensus	487		97.03
KOG0266|consensus	456		97.03
KOG0281|consensus	499		97.02
KOG0268|consensus	433		96.99
KOG3881|consensus	412		96.98
KOG0283|consensus	712		96.96
KOG0306|consensus	888		96.96
KOG2055|consensus	514		96.96
KOG1188|consensus	376		96.94
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.9
KOG0281|consensus	499		96.89
KOG0278|consensus	334		96.89
KOG2106|consensus	626		96.89
KOG2110|consensus	391		96.88
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.87
KOG2111|consensus	346		96.87
KOG0647|consensus	347		96.85
KOG0639|consensus	705		96.79
KOG1963|consensus	792		96.77
KOG0299|consensus	479		96.76
KOG1273|consensus	405		96.74
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.71
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.7
KOG2048|consensus	691		96.67
KOG2055|consensus	514		96.67
KOG0649|consensus	325		96.63
KOG0308|consensus	735		96.63
KOG0278|consensus	334		96.62
KOG0296|consensus	399		96.58
PRK11028	330	6-phosphogluconolactonase; Provisional	96.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.57
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.57
KOG0285|consensus	460		96.55
KOG0277|consensus	311		96.54
KOG0276|consensus	794		96.51
KOG1407|consensus	313		96.49
KOG1274|consensus	933		96.46
PRK11028	330	6-phosphogluconolactonase; Provisional	96.46
KOG0303|consensus	472		96.45
KOG0305|consensus	484		96.44
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.42
KOG0306|consensus	888		96.4
KOG1273|consensus	405		96.38
KOG0318|consensus	603		96.27
KOG2048|consensus	691		96.26
KOG1274|consensus	933		96.22
KOG0283|consensus	712		96.2
KOG0282|consensus	503		96.2
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.16
KOG0289|consensus	506		96.11
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.05
KOG0264|consensus	422		96.02
KOG0273|consensus	524		96.0
KOG4640|consensus	665		95.92
KOG3621|consensus	726		95.9
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	95.84
KOG0294|consensus	362		95.83
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	95.81
KOG2066|consensus	846		95.7
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.67
KOG0271|consensus	480		95.67
KOG2110|consensus	391		95.61
KOG0772|consensus	641		95.59
KOG2096|consensus	420		95.59
KOG2114|consensus	933		95.56
KOG0265|consensus	338		95.41
KOG0276|consensus	794		95.39
KOG1408|consensus	1080		95.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.31
KOG0271|consensus	480		95.27
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.19
KOG1645|consensus	463		95.14
KOG0293|consensus	519		95.07
KOG1446|consensus	311		95.0
KOG0301|consensus	745		94.96
KOG4649|consensus	354		94.88
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.87
KOG0308|consensus	735		94.87
KOG0640|consensus	430		94.83
KOG0305|consensus	484		94.78
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	94.64
KOG0319|consensus	775		94.63
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.59
KOG2111|consensus	346		94.56
KOG0284|consensus	464		94.5
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.44
KOG4378|consensus	673		94.4
KOG0270|consensus	463		94.29
KOG0289|consensus	506		94.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.29
KOG0286|consensus	343		94.23
KOG0643|consensus	327		94.13
KOG4649|consensus	354		94.05
KOG0319|consensus	775		94.04
KOG0643|consensus	327		93.99
KOG0316|consensus	307		93.9
COG3391	381	Uncharacterized conserved protein [Function unknow	93.82
KOG0321|consensus	720		93.8
KOG2096|consensus	420		93.75
KOG2106|consensus	626		93.74
KOG1272|consensus	545		93.62
KOG0302|consensus	440		93.58
KOG0295|consensus	406		93.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.35
KOG1587|consensus	555		93.25
KOG0322|consensus	323		93.22
KOG0264|consensus	422		93.17
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.08
KOG0642|consensus	577		93.07
KOG0282|consensus	503		93.04
KOG1523|consensus	361		92.96
KOG0772|consensus	641		92.92
KOG2445|consensus	361		92.9
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.87
KOG4190|consensus	1034		92.87
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	92.86
KOG0307|consensus	1049		92.82
KOG1332|consensus	299		92.81
KOG0267|consensus	825		92.77
KOG0302|consensus	440		92.7
KOG1517|consensus	1387		92.6
KOG2695|consensus	425		92.59
KOG0269|consensus	839		92.42
KOG0321|consensus	720		92.41
KOG0265|consensus	338		92.35
KOG0275|consensus	508		92.27
KOG0307|consensus	1049		92.19
KOG0286|consensus	343		92.17
KOG0640|consensus	430		92.13
KOG0973|consensus	942		92.08
KOG0263|consensus	707		92.07
KOG0263|consensus	707		91.82
KOG0973|consensus	942		91.77
KOG1188|consensus	376		91.74
COG4946	668	Uncharacterized protein related to the periplasmic	91.65
KOG1587|consensus	555		91.55
KOG1407|consensus	313		91.46
KOG4378|consensus	673		91.34
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	91.33
KOG1332|consensus	299		91.26
KOG0288|consensus	459		91.24
KOG4714|consensus	319		90.88
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	90.86
KOG0295|consensus	406		90.7
KOG0771|consensus	398		90.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	90.62
COG3292	671	Predicted periplasmic ligand-binding sensor domain	90.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	90.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.53
COG3292	671	Predicted periplasmic ligand-binding sensor domain	90.48
KOG0270|consensus	463		90.42
KOG0292|consensus	1202		90.36
KOG2445|consensus	361		90.34
KOG2114|consensus	933		90.33
KOG0272|consensus	459		90.17
KOG0285|consensus	460		90.16
KOG1517|consensus	1387		90.12
KOG1063|consensus	764		90.12
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	90.11
KOG0650|consensus	733		89.89
KOG0288|consensus	459		89.74
KOG1310|consensus	758		89.65
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.52
KOG1240|consensus	1431		89.37
KOG0301|consensus	745		89.33
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	89.33
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	89.2
KOG0639|consensus	705		88.96
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.62
KOG3611|consensus	737		88.31
KOG2444|consensus	238		88.2
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	88.16
KOG1538|consensus	1081		87.97
KOG0284|consensus	464		87.64
KOG0290|consensus	364		87.63
KOG2079|consensus	1206		87.16
KOG0299|consensus	479		86.79
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	86.28
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	85.82
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.74
KOG0300|consensus	481		85.66
KOG1645|consensus	463		85.62
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	85.55
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	85.02
KOG2063|consensus	877		84.96
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	84.7
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	84.67
KOG1408|consensus	1080		84.44
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	84.34
COG2319	466	FOG: WD40 repeat [General function prediction only	84.31
KOG3621|consensus	726		84.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	84.12
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.85
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	83.58
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.33
KOG1963|consensus	792		83.28
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	83.24
KOG3881|consensus	412		83.13
KOG1524|consensus	737		82.97
KOG0313|consensus	423		82.77
KOG0272|consensus	459		82.58
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.5
PF08309	42	LVIVD: LVIVD repeat; InterPro: IPR013211 This repe	82.09
PRK02888	635	nitrous-oxide reductase; Validated	82.0
KOG1897|consensus	1096		81.95
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	81.83
KOG1445|consensus	1012		81.21
KOG2444|consensus	238		81.06
KOG0650|consensus	733		81.05
PF14727	418	PHTB1_N: PTHB1 N-terminus	80.63
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	80.39
KOG0645|consensus	312		80.36

>KOG3522|consensus

Probab=99.56  E-value=1.8e-15  Score=129.91  Aligned_cols=117  Identities=26%  Similarity=0.394  Sum_probs=106.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECC-cccceeeeeEecC--CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAV-SQWRRCLHSIQLK--DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~-~~~~~~l~~~~l~--~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      ++..||+++|||+|.|.+|++. +..++++.+...|  .+|.++.+..+.+++|+-||++++|.|..+|.||.++++.++
T Consensus       544 as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~  623 (925)
T KOG3522|consen  544 ASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIP  623 (925)
T ss_pred             cCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccc
Confidence            5788999999999999999988 5445677777776  699999999999999999999999999999999999777789


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      .|.  .|||+++..++.+|+++|++|+||+.+|+..++++++
T Consensus       624 ~g~--lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~lea  663 (925)
T KOG3522|consen  624 TGS--LPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEA  663 (925)
T ss_pred             cCC--ccccchhhhhceeeeecCCceEEEechhccccchhHH
Confidence            999  9999999999999999999999999999998887664

>KOG3522|consensus

Probab=99.27  E-value=1.4e-11  Score=106.36  Aligned_cols=114  Identities=20%  Similarity=0.250  Sum_probs=97.3

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      .|..+|.|+++|+++||++.+..+......+  .-.+|++|.|.++.||+++++|+..+|. ..++.|++++....+.+.
T Consensus       634 ~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt  712 (925)
T KOG3522|consen  634 FQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVT  712 (925)
T ss_pred             hhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEe-cccccCCccccccCccee
Confidence            4678999999999999999997654333332  2369999999999999999999999998 778889999988866666


Q ss_pred             CCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019         82 PHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        82 ~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ...|++.|.-+++.+||  .+.+.|.+..|+.+...+.+
T Consensus       713 ~~lP~~kllsv~~rl~c--~gl~~V~~~~~l~v~~~v~~  749 (925)
T KOG3522|consen  713 VDLPFGKLLSVPGRLWC--QGLLMVLTSLTLLVALPVPR  749 (925)
T ss_pred             ecCCCcccccCCCcccc--cceeEEeccceeEEEeeeee
Confidence            56799999999999999  99999999999999887653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.54  E-value=1e-05  Score=57.89  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC-EEEEEec-CCcEEEEEcCCCCCCCCCCceE-EEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG-RVVCALA-DGSVAIFRRGPDGQWDLSKYHT-VTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~-~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~-i~lg   80 (121)
                      .+.++.|+.+|.|++|+..+  .+.+..+..+ +.|.++.+.++ .++++.. ||.+.+|+        +...+. ..+.
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~~  132 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLET--GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------VETGKCLTTLR  132 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCc--ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE--------CCCcEEEEEec
Confidence            45899999999999999887  3455566544 58999998863 4555555 99999984        433322 2333


Q ss_pred             CCCCceeEeeeeC--CEEEEEe-CCeEEEEeCCCCcEEEEEE
Q psy16019         81 LPHHSVRSLAAVY--NKVWCGY-KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ~~~~pV~~m~~v~--~~lw~~~-gn~I~Vi~~~tl~i~~~~~  119 (121)
                      ....+|+++....  ..+.+++ .+.|+++|..+.+..+.++
T Consensus       133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  174 (289)
T cd00200         133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT  174 (289)
T ss_pred             cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence            3346899999886  4455566 5789999999888776664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.46  E-value=2.1e-05  Score=56.24  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=75.1

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ...+.+..|+++|.|.+|+..+  .+....+..+ ..+.++.+..+  .++++..||.+.+|+....       .....+
T Consensus        19 ~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~   89 (289)
T cd00200          19 PDGKLLATGSGDGTIKVWDLET--GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-------ECVRTL   89 (289)
T ss_pred             CCCCEEEEeecCcEEEEEEeeC--CCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-------cceEEE
Confidence            3457889999999999999886  3444555444 67778877654  7888888999999954321       112222


Q ss_pred             CCCCCceeEeeeeC-CEE-EEEe-CCeEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAVY-NKV-WCGY-KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v~-~~l-w~~~-gn~I~Vi~~~tl~i~~~~~  119 (121)
                      .....+|.++.... +++ .++. .+.|.++|..+.+....+.
T Consensus        90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  132 (289)
T cd00200          90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR  132 (289)
T ss_pred             eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence            23236899998885 344 4444 4789999999888777664

>KOG0274|consensus

Probab=98.45  E-value=5.1e-06  Score=70.23  Aligned_cols=107  Identities=19%  Similarity=0.191  Sum_probs=92.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      +..+.+..|+-|.++.||++.+  -+|.+++. ++++|.||.-.+....-|..|-+|.||        +++++..+.+-.
T Consensus       259 ~~~~~lvsgS~D~t~rvWd~~s--g~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW--------~v~n~~~l~l~~  328 (537)
T KOG0274|consen  259 SGGDKLVSGSTDKTERVWDCST--GECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW--------DVTNGACLNLLR  328 (537)
T ss_pred             cCCCEEEEEecCCcEEeEecCC--CcEEEEecCCCceEEEEEccCceEeeccCCceEEEE--------eccCcceEEEec
Confidence            4578999999999999999877  68999998 568999999988877778999999996        788887764433


Q ss_pred             -CCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         82 -PHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        82 -~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                       ...||+||...++.+..|+. ..|.|.|+.+++..++++
T Consensus       329 ~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~  368 (537)
T KOG0274|consen  329 GHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLS  368 (537)
T ss_pred             cccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeec
Confidence             56999999999999999998 569999999999998874

>PTZ00421 coronin; Provisional

Probab=98.30  E-value=6.5e-05  Score=62.90  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=78.7

Q ss_pred             CCeEEEEecCCeEEEEECCccc-----ceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQW-----RRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~-----~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      ...+..|++||.|.||+..+..     .+++..+. +...|.++.++.   +.++.|..||+|.+|        |++...
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW--------Dl~tg~  159 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW--------DVERGK  159 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE--------ECCCCe
Confidence            4578899999999999986531     12345554 347999999974   468888999999997        555443


Q ss_pred             E-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         76 T-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        76 ~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      . ..+.....+|+++...  ++.|..|+. +.|.++|+.+.+...+++
T Consensus       160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~  207 (493)
T PTZ00421        160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE  207 (493)
T ss_pred             EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            3 3443334789999987  466777777 589999999998877664

>KOG0318|consensus

Probab=98.19  E-value=4e-05  Score=64.28  Aligned_cols=103  Identities=12%  Similarity=0.113  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEecCCeEEEEECCccc-ceeeeeEecCCCEEEEEEeCCE--EEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHVQGR--VVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~~~~--v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      +..+..+.+|.|||++|||++.... +++.+.+.++++|++|.|.++-  +-++-+++.+.+|++.+...    ....-.
T Consensus       452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~----~~~~w~  527 (603)
T KOG0318|consen  452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV----KTNRWA  527 (603)
T ss_pred             cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce----ecceee
Confidence            4567899999999999999988854 3455677889999999999764  44556679999997765432    111123


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCC
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPK  110 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~  110 (121)
                      +.+  ..|.||+-..+..-.|.|   ..|+|.+.+
T Consensus       528 FHt--akI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  528 FHT--AKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             eee--eeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            344  678888877654444444   578887654

>KOG1036|consensus

Probab=98.18  E-value=3.1e-05  Score=61.17  Aligned_cols=98  Identities=17%  Similarity=0.236  Sum_probs=80.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      ..+-|.+++=||.+.+|+...+  ..+..+++..|+++-.+.+ ..+|+|..||.|..|        |++.-....+|.-
T Consensus        24 ~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~--------Dln~~~~~~igth   93 (323)
T KOG1036|consen   24 SSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRY--------DLNTGNEDQIGTH   93 (323)
T ss_pred             cCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccCCceEEEeccCceEEEE--------EecCCcceeeccC
Confidence            4467888999999999998884  5567788889999999875 589999999999999        5555556677877


Q ss_pred             CCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019         83 HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        83 ~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t  111 (121)
                      ..|||||...  .+++-.|.- ++|.++|+.+
T Consensus        94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             CCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence            7999999988  577777666 6899999985

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.17  E-value=9.2e-05  Score=50.77  Aligned_cols=85  Identities=24%  Similarity=0.393  Sum_probs=63.1

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      .++.+.+||+|..|.||.-.    ..+.++.-++.|+++.+.. ++..-||+||+|.||++. ...|-.++        -
T Consensus        14 g~~eLlvGs~D~~IRvf~~~----e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~-~RlWRiKS--------K   80 (111)
T PF14783_consen   14 GENELLVGSDDFEIRVFKGD----EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS-QRLWRIKS--------K   80 (111)
T ss_pred             CcceEEEecCCcEEEEEeCC----cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc-ceeeeecc--------C
Confidence            35789999999999999955    4578889999999999874 467779999999999773 24465332        2


Q ss_pred             CCceeEeeeeC------CEEEEEeCC
Q psy16019         83 HHSVRSLAAVY------NKVWCGYKN  102 (121)
Q Consensus        83 ~~pV~~m~~v~------~~lw~~~gn  102 (121)
                       .-+.||...+      .+|-+|..|
T Consensus        81 -~~~~~~~~~D~~gdG~~eLI~Gwsn  105 (111)
T PF14783_consen   81 -NQVTSMAFYDINGDGVPELIVGWSN  105 (111)
T ss_pred             -CCeEEEEEEcCCCCCceEEEEEecC
Confidence             2345666553      367777774

>KOG0315|consensus

Probab=98.17  E-value=3e-05  Score=60.27  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCc-eE-EEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKY-HT-VTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~-i~lg   80 (121)
                      ..-|+.|+|||.+-||++..  ..|-..++.+++|.++.-+.|  .+|+|-.+|.|-||        |+.+. +. .-+.
T Consensus        95 grWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvW--------Dl~~~~c~~~liP  164 (311)
T KOG0315|consen   95 GRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVW--------DLGENSCTHELIP  164 (311)
T ss_pred             CeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEE--------EccCCccccccCC
Confidence            44688999999999999998  567777888999999988755  69999999999997        55443 11 1233


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      ++..||+++.+.  ++.|.++.. .+-+|-+..+.+-.
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~  202 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA  202 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence            334899999888  466777665 67888877664433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.16  E-value=0.00012  Score=54.37  Aligned_cols=107  Identities=22%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             CCCeEEEEe-cCCeEEEEECCcccceeeeeEecC------C--CEEEEEEe--CCEEEEEec-CCcEEEEEcCCCCCCCC
Q psy16019          4 VLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLK------D--SVLNIVHV--QGRVVCALA-DGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         4 ~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~------~--~V~~i~~~--~~~v~v~La-nG~l~Vy~r~~~g~wd~   71 (121)
                      .+..+++++ .+|.|++|+..+  .+++.++..+      +  ....|.+.  +..+|++.+ ++.+.+|        |.
T Consensus       167 dg~~l~~~~~~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~--------d~  236 (300)
T TIGR03866       167 DGKELWVSSEIGGTVSVIDVAT--RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV--------DA  236 (300)
T ss_pred             CCCEEEEEcCCCCEEEEEEcCc--ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE--------EC
Confidence            445677776 489999999887  3444444321      1  22345554  446788754 5679988        44


Q ss_pred             CCceEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         72 SKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        72 ~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++.+.+..-....++.++...  ++.|+++.+  +.|.|+|.++++..+++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       237 KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            444443211112467777765  578888764  7899999999999988875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.10  E-value=0.00022  Score=52.30  Aligned_cols=110  Identities=20%  Similarity=0.310  Sum_probs=77.3

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE-EEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN-IVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGL   81 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~-i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~   81 (121)
                      ..+.+++++.++.|+.++..+  -+.+++..+++.+.. ....++.+|++..+|.|..|....+. .|..     -.-..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~-----~~~~~  107 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKT--GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI-----YLTSS  107 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTT--SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE-----EE-SS
T ss_pred             eCCEEEEEcCCCEEEEEECCC--CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeee-----ccccc
Confidence            467899999999999999866  377888888754322 47789999999999999998633221 2431     01111


Q ss_pred             CCC---ceeEeeeeCCEEEEEe-CCeEEEEeCCCCcEEEEEEe
Q psy16019         82 PHH---SVRSLAAVYNKVWCGY-KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        82 ~~~---pV~~m~~v~~~lw~~~-gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      +..   +.....+.++.+++++ ...|+.+|++|+++.-+.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen  108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            111   2223444589999999 58999999999999776653

...

>KOG1036|consensus

Probab=98.10  E-value=7.4e-05  Score=59.09  Aligned_cols=99  Identities=17%  Similarity=0.138  Sum_probs=78.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~   81 (121)
                      -.++|.|+-||.|..|+++..  +..+--.+-++|.||.|.  .+.|.+|.=|+++.+|        |...... ..+..
T Consensus        65 ~~~~~~G~~dg~vr~~Dln~~--~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~w--------D~R~~~~~~~~d~  134 (323)
T KOG1036|consen   65 ESTIVTGGLDGQVRRYDLNTG--NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFW--------DPRNKVVVGTFDQ  134 (323)
T ss_pred             CceEEEeccCceEEEEEecCC--cceeeccCCCceEEEEeeccCCeEEEcccCccEEEE--------ecccccccccccc
Confidence            358999999999999998872  323322455899999998  8899999999999996        6554322 23333


Q ss_pred             CCCceeEeeeeCCEEEEEeCC-eEEEEeCCCCcE
Q psy16019         82 PHHSVRSLAAVYNKVWCGYKN-KIHVVDPKSLDV  114 (121)
Q Consensus        82 ~~~pV~~m~~v~~~lw~~~gn-~I~Vi~~~tl~i  114 (121)
                       .+.|-||...++.|-+||.+ +|.++|..+++.
T Consensus       135 -~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  135 -GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             -CceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence             46999999999999998885 899999999875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.09  E-value=0.00016  Score=58.37  Aligned_cols=102  Identities=18%  Similarity=0.296  Sum_probs=72.8

Q ss_pred             CeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEE-EEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EE
Q psy16019          6 PTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLN-IVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VT   78 (121)
Q Consensus         6 ~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~-i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~   78 (121)
                      +.+.+-. ++|.+.|++...  ++.+.++....++.. +.+.  +.++||+..||.|.++        |+.+.++   ++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t--~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi--------D~~~~~~v~~i~   75 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT--NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVI--------DLATGKVVATIK   75 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEE--------ETTSSSEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCC--CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEE--------ECCcccEEEEEe
Confidence            3444444 689999999888  678888887755433 4444  3579999999999999        6766655   67


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +|.  .| +.+++.  ++.++++|.  +.+.|||++|+++.+.+++
T Consensus        76 ~G~--~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   76 VGG--NP-RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             -SS--EE-EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             cCC--Cc-ceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            777  45 567765  578998886  8999999999999998764

...

>KOG0266|consensus

Probab=98.08  E-value=0.00017  Score=59.52  Aligned_cols=104  Identities=18%  Similarity=0.168  Sum_probs=81.0

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      ++.+..+.-|++|+.|.||+..+. .+++++++ +++.|+|+.++  ++.++.|..||++.||        |+...+.+ 
T Consensus       212 s~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW--------d~~~~~~~~  282 (456)
T KOG0266|consen  212 SPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW--------DVRTGECVR  282 (456)
T ss_pred             CCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE--------eccCCeEEE
Confidence            455568889999999999999552 36788884 67899999987  4589999999999997        66654332 


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcE
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      .+..-..+|+++...  ++.|+.|+. +.|.|.|..++++
T Consensus       283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence            333323899999888  478888876 6899999999994

>PTZ00420 coronin; Provisional

Probab=98.05  E-value=0.00034  Score=59.65  Aligned_cols=107  Identities=15%  Similarity=0.138  Sum_probs=75.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccc------eeeeeEe-cCCCEEEEEEeCC--EEE-EEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWR------RCLHSIQ-LKDSVLNIVHVQG--RVV-CALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~------~~l~~~~-l~~~V~~i~~~~~--~v~-v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      .+.+..|++||.|.||+..+...      .++..+. +...|.++.++.+  .++ .|..||+|.+|        |+...
T Consensus        87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW--------Dl~tg  158 (568)
T PTZ00420         87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW--------DIENE  158 (568)
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE--------ECCCC
Confidence            35788999999999999865211      1233443 4478999999853  344 57789999997        55544


Q ss_pred             eE-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         75 HT-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        75 ~~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .. ..+.. +.+|.++...  ++.|.++|. +.|.|+|+.+.++.++|+.
T Consensus       159 ~~~~~i~~-~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        159 KRAFQINM-PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             cEEEEEec-CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            32 33332 2689999876  466666775 6899999999999887753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.02  E-value=0.00022  Score=56.54  Aligned_cols=105  Identities=11%  Similarity=0.154  Sum_probs=74.5

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCE-EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSV-LNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V-~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~   82 (121)
                      .+.+++|+.+|.++.|+..+  -+.+++.++++.+ ......++++|++..||.|..|+...+. .|..+.      +. 
T Consensus        65 ~~~v~v~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~-  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAET--GKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL------SS-  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccC--CcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc------Cc-
Confidence            45899999999999999766  3668887777533 2345668899999999999999765432 464332      22 


Q ss_pred             CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                       .......+.++.++++++ +.++.+|++++++.-+++
T Consensus       136 -~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       136 -EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             -eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence             111222345788888877 579999999998765543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.99  E-value=0.00034  Score=55.45  Aligned_cols=106  Identities=17%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPH   83 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~~   83 (121)
                      .+.+++++.+|.++.|+..+  -+.+++.+.+. .......+++||++..||.|..++...+. .|..+.     ++.  
T Consensus       241 ~~~vy~~~~~g~l~a~d~~t--G~~~W~~~~~~-~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-----~~~--  310 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRS--GRVLWKRDASS-YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDE-----LKY--  310 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCC--CcEEEeeccCC-ccCceEeCCEEEEECCCCeEEEEECCCCcEEEcccc-----ccC--
Confidence            35789999999999999876  35566665442 12334568899999999999999775442 465422     222  


Q ss_pred             CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ....+..+.++.|++++. ..|+++|+.++++..++++
T Consensus       311 ~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       311 RQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             CccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            222334557899999988 5899999999999887764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.91  E-value=0.00092  Score=50.60  Aligned_cols=114  Identities=13%  Similarity=0.158  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCC-----------
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQW-----------   69 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~w-----------   69 (121)
                      .+.+..+++||++| ||+|+..+. .+.....+. .+|.+|...+ -.+++.|+||.|.+|+-..-..-           
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~~-~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDP-SKPTRILKL-SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCC-ccceeEeec-ceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccc
Confidence            45678999999999 999998331 122222222 2388887765 35788889999998874321000           


Q ss_pred             --------CCCCceEE-----------------------EeCC-------------CCCceeEeeeeCCEEEEEeCCeEE
Q psy16019         70 --------DLSKYHTV-----------------------TLGL-------------PHHSVRSLAAVYNKVWCGYKNKIH  105 (121)
Q Consensus        70 --------d~~~~~~i-----------------------~lg~-------------~~~pV~~m~~v~~~lw~~~gn~I~  105 (121)
                              +...-..+                       ....             -+.++++|...++.+.+|..+...
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~  160 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFY  160 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceE
Confidence                    00000000                       0000             035778888889999999999999


Q ss_pred             EEeCCCCcEEEEE
Q psy16019        106 VVDPKSLDVIRPV  118 (121)
Q Consensus       106 Vi~~~tl~i~~~~  118 (121)
                      ++|..+++.+.-+
T Consensus       161 ~idl~~~~~~~l~  173 (275)
T PF00780_consen  161 LIDLNTGSPSELL  173 (275)
T ss_pred             EEecCCCCceEEe
Confidence            9999998877644

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.89  E-value=0.00063  Score=54.60  Aligned_cols=106  Identities=9%  Similarity=0.057  Sum_probs=75.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPH   83 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~~   83 (121)
                      .+.+++++.+|.++.++..+.  +.+++.++... ..+...+++||++..||.|..++...+. .|..+..     +.  
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~-~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~~--  325 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSG--QIVWKREYGSV-NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----LH--  325 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCC--CEEEeecCCCc-cCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc-----CC--
Confidence            467899999999999998763  55666555432 2345678999999999999999876443 3653321     11  


Q ss_pred             CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ....+..+.++.|+++.. ..++++|+.|+++.-++++
T Consensus       326 ~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        326 RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            112233457899999988 5799999999999877653

>KOG0296|consensus

Probab=97.89  E-value=0.00014  Score=58.81  Aligned_cols=97  Identities=21%  Similarity=0.204  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E-
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T-   78 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~-   78 (121)
                      ++..|..-+|.-||+|.||++..  .+..+.+.++++|+++++.. .++|+|.+||.|..|        |...-..+ . 
T Consensus       295 ss~lpL~A~G~vdG~i~iyD~a~--~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~w--------DaRtG~l~~~y  364 (399)
T KOG0296|consen  295 SSKLPLAACGSVDGTIAIYDLAA--STLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQW--------DARTGQLKFTY  364 (399)
T ss_pred             ccccchhhcccccceEEEEeccc--chhheeccCCCceEEEEEcCcchheeeccCceEEee--------eccccceEEEE
Confidence            45677888999999999999876  35567778999999999987 899999999999997        54443332 2 


Q ss_pred             eCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeC
Q psy16019         79 LGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDP  109 (121)
Q Consensus        79 lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~  109 (121)
                      -|. +.+|-++++..  +.+--++. |.-+||+.
T Consensus       365 ~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  365 TGH-QMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             ecC-chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            233 58999999884  44444555 66777654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.85  E-value=0.0014  Score=48.59  Aligned_cols=101  Identities=10%  Similarity=0.129  Sum_probs=66.4

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEEEE-ecCCcEEEEEcCCCCCCCCCCceEE-EeCCCC
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCA-LADGSVAIFRRGPDGQWDLSKYHTV-TLGLPH   83 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~-LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~   83 (121)
                      +..+..+|.|++|+..+  .+.++.+.....+.++.+..+  .+|++ ..+|.|.+|+        ....+.+ .+....
T Consensus         4 ~~s~~~d~~v~~~d~~t--~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d--------~~~~~~~~~~~~~~   73 (300)
T TIGR03866         4 YVSNEKDNTISVIDTAT--LEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVID--------LATGEVIGTLPSGP   73 (300)
T ss_pred             EEEecCCCEEEEEECCC--CceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEE--------CCCCcEEEeccCCC
Confidence            34567899999999876  456777776666667776533  57654 5678999984        3333332 122111


Q ss_pred             CceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         84 HSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        84 ~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      .| ..+...  ++.++++++  +.|.++|..+.+....++
T Consensus        74 ~~-~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~  112 (300)
T TIGR03866        74 DP-ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP  112 (300)
T ss_pred             Cc-cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence            23 444444  467888765  689999999988777665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0316|consensus

Probab=97.80  E-value=0.00012  Score=56.70  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH   84 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~   84 (121)
                      .-+.-|+-|.++.+|++.++..++++.+. -.|.|.+|...+-.+.+|.+||++-.|.-.        .-.+. ..--.+
T Consensus       114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR--------~G~l~-sDy~g~  184 (307)
T KOG0316|consen  114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIR--------KGTLS-SDYFGH  184 (307)
T ss_pred             eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEee--------cceee-hhhcCC
Confidence            34667888999999999997777888884 459999999999999999999999999432        22221 111146


Q ss_pred             ceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         85 SVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        85 pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      ||.|+...  ++.+-+|+= ..+..+|-+|+++.++
T Consensus       185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s  220 (307)
T KOG0316|consen  185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS  220 (307)
T ss_pred             cceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence            99999888  488888887 4799999999998654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.78  E-value=0.0014  Score=57.19  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCce--EEEe
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYH--TVTL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~--~i~l   79 (121)
                      .+.+..|+.||.|.+|+...  .+++.++.....|.++.+.   ...+.+|..||.|.+|+        +.+.+  ...+
T Consensus       588 ~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD--------~~~~~~~~~~~  657 (793)
T PLN00181        588 PTLLASGSDDGSVKLWSINQ--GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD--------LRNPKLPLCTM  657 (793)
T ss_pred             CCEEEEEcCCCEEEEEECCC--CcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE--------CCCCCccceEe
Confidence            45788999999999999987  4677777777889999874   45788999999999984        43322  2223


Q ss_pred             CCCCCceeEeeeeC-CEEEEEeC-CeEEEEeCCC
Q psy16019         80 GLPHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        80 g~~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~t  111 (121)
                      .....+|.++...+ +.+..|+. +.|.+.|..+
T Consensus       658 ~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        658 IGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             cCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCC
Confidence            22237899998875 55666666 6899999864

>KOG2077|consensus

Probab=97.75  E-value=6e-06  Score=69.96  Aligned_cols=44  Identities=48%  Similarity=0.877  Sum_probs=41.0

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH   44 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~   44 (121)
                      |+++.||+|+|-+++.||++++...||+|++.++++|+|+++.|
T Consensus       789 ~s~a~pt~w~G~qn~~vy~hsav~~wk~cL~~ik~~d~vls~vh  832 (832)
T KOG2077|consen  789 ASDAVPTSWTGVQNEHVYTHSAVVQWKECLSPIKQSDYVLSSVH  832 (832)
T ss_pred             ccccccceeeccccceEEeehhhhhHHHHhhhhcccchhhcccC
Confidence            67889999999999999999999999999999999999998753

>KOG0279|consensus

Probab=97.75  E-value=0.00057  Score=53.74  Aligned_cols=115  Identities=21%  Similarity=0.312  Sum_probs=83.8

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEe--c-CCCEEEEEEeCC----EEEEEecCCcEEEEEcCC--------
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--L-KDSVLNIVHVQG----RVVCALADGSVAIFRRGP--------   65 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l-~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~--------   65 (121)
                      |++...++.-|+.|..|-+|+...   .|+-++.  . .+=|.|++++++    .+.-+..|++|-||....        
T Consensus       113 ~s~dn~qivSGSrDkTiklwnt~g---~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~  189 (315)
T KOG0279|consen  113 FSTDNRQIVSGSRDKTIKLWNTLG---VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI  189 (315)
T ss_pred             ecCCCceeecCCCcceeeeeeecc---cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence            456677899999999999999887   4444331  2 577999998765    355566677777775543        


Q ss_pred             -----------------------CC---CCCCCCceEE-EeCCCCCceeEeeeeCCEEEEEe--CCeEEEEeCCCCcEEE
Q psy16019         66 -----------------------DG---QWDLSKYHTV-TLGLPHHSVRSLAAVYNKVWCGY--KNKIHVVDPKSLDVIR  116 (121)
Q Consensus        66 -----------------------~g---~wd~~~~~~i-~lg~~~~pV~~m~~v~~~lw~~~--gn~I~Vi~~~tl~i~~  116 (121)
                                             ||   .||+++-+-+ +++. ..+|++|++.+++.|.+-  +..|.|.|.++..+.-
T Consensus       190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a-~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~  268 (315)
T KOG0279|consen  190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA-FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVE  268 (315)
T ss_pred             cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC-CCeEeeEEecCCceeEeeccCCceEEEeccchhhhh
Confidence                                   22   4888877554 5543 589999999999988754  5899999999877665


Q ss_pred             EEE
Q psy16019        117 PVT  119 (121)
Q Consensus       117 ~~~  119 (121)
                      .+.
T Consensus       269 ~l~  271 (315)
T KOG0279|consen  269 ELK  271 (315)
T ss_pred             hcc
Confidence            443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.71  E-value=0.0018  Score=50.53  Aligned_cols=109  Identities=11%  Similarity=0.184  Sum_probs=73.8

Q ss_pred             CCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019          5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH   83 (121)
Q Consensus         5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~   83 (121)
                      .+.+|.=| .+|..++|+...  -+.+.+++.|..==-|++.+..++++-++..|..++..     +++..+.|++-+-.
T Consensus        99 ~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~-----~f~~~~~i~V~~~g  171 (264)
T PF05096_consen   99 GDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPE-----TFKEVRTIQVTDNG  171 (264)
T ss_dssp             TTEEEEEESSSSEEEEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TT-----T-SEEEEEE-EETT
T ss_pred             CCEEEEEEecCCeEEEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCc-----ccceEEEEEEEECC
Confidence            46777777 799999999887  46778888885444566888888888777777776221     34444556554434


Q ss_pred             CceeE---eeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRS---LAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~---m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .||+.   |..+++.|||-.-  +.|..||++|++++..+.+
T Consensus       172 ~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDl  213 (264)
T PF05096_consen  172 RPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDL  213 (264)
T ss_dssp             EE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred             EECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence            67666   7788899999776  8999999999999988754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.69  E-value=0.0037  Score=45.70  Aligned_cols=100  Identities=13%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCC------------EEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS------------VLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~------------V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~   72 (121)
                      .+.+.+++.+|.|+.++..+  -+.++..+.+.+            -......++.+|++..+|.+.-++.        .
T Consensus       122 ~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~--------~  191 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDL--------A  191 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEET--------T
T ss_pred             cCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEEC--------C
Confidence            56789999999999999887  366777665431            1334445679999999997555532        2


Q ss_pred             CceEE-EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         73 KYHTV-TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        73 ~~~~i-~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      +.+.+ +.- +..+...+...++.||+++. ++++.+|++|+++.
T Consensus       192 tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  192 TGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             TTEEEEEEC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCEEEEec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            22222 111 11222236677899999994 89999999999875

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.67  E-value=0.0013  Score=52.71  Aligned_cols=106  Identities=12%  Similarity=0.139  Sum_probs=76.0

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCC----------E--EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS----------V--LNIVHVQGRVVCALADGSVAIFRRGPDG-QWD   70 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~----------V--~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd   70 (121)
                      ..+.|++++.+|.++-++..+  -+.+|+.+++..          .  -.+...+++||++..+|.|..|+..++. .|.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADT--GKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCC--CcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            356899999999999999876  356777666530          0  1245678899999999999999876543 576


Q ss_pred             CCCceEEEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         71 LSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        71 ~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+-+..+  .  ..|    .+.++.++++.+ +.++.+|++|+++.=+++
T Consensus       146 ~~~~~~~--~--ssP----~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        146 TKVAGEA--L--SRP----VVSDGLVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             ccCCCce--e--cCC----EEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            5433211  1  123    445889999888 579999999999876554

>KOG0274|consensus

Probab=97.62  E-value=0.00054  Score=58.10  Aligned_cols=108  Identities=21%  Similarity=0.242  Sum_probs=86.8

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCc--eEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKY--HTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~--~~i~   78 (121)
                      -.++.+.-|++||.|-||+...  -+|+++++ +..+|.++.+.. +++|-|.-|++|-+|        |+..+  ....
T Consensus       339 ~~~~~lvsgs~d~~v~VW~~~~--~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvW--------dl~~~~~c~~t  408 (537)
T KOG0274|consen  339 LDEPLLVSGSYDGTVKVWDPRT--GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVW--------DLRTKRKCIHT  408 (537)
T ss_pred             ecCCEEEEEecCceEEEEEhhh--ceeeeeecCCcceEEEEEecCcceEEeeeeccceEee--------cCCchhhhhhh
Confidence            3478899999999999999985  68999996 458999999888 999999999999995        77777  3345


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +..+..-|.+|..-.+.|-.++- +.|.+-|.++++..+.++.
T Consensus       409 l~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  409 LQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             hcCCcccccccccccceeEeccccccEEEeecccCceeeeecc
Confidence            55554666666666777655444 7899999999999988764

>KOG1539|consensus

Probab=97.60  E-value=0.0013  Score=57.77  Aligned_cols=106  Identities=18%  Similarity=0.199  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~   78 (121)
                      +-.|.+.+|.+.|.+.+||...  +|.+.+++ .++.|++|....  +-|-+|+.||+|.+|.-.        --+. .+
T Consensus       170 TYLNKIvvGs~~G~lql~Nvrt--~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK--------~dkil~s  239 (910)
T KOG1539|consen  170 TYLNKIVVGSSQGRLQLWNVRT--GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK--------FDKILMS  239 (910)
T ss_pred             hheeeEEEeecCCcEEEEEecc--CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc--------cCcEEEE
Confidence            4567899999999999999998  68888885 468999999764  579999999999999543        3333 34


Q ss_pred             eCCCCCceeEeeee--C-CEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--Y-NKVWCGYKN-KIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~-~~lw~~~gn-~I~Vi~~~tl~i~~~~  118 (121)
                      +-.+..+|+++..-  + -.|..|+.| .+.+.|.+.-++....
T Consensus       240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~  283 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT  283 (910)
T ss_pred             EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence            44444788888887  3 445667775 4889998887776654

>KOG0647|consensus

Probab=97.59  E-value=0.0012  Score=52.57  Aligned_cols=106  Identities=14%  Similarity=0.141  Sum_probs=79.6

Q ss_pred             CeEEEEecCCeEEEEECCcc-cceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      +.+..|+=||.+.+|..... .........++.+|+|+.+.+  .+||+|.+||.+-+|        |+.+-++.+++.-
T Consensus        41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w--------DL~S~Q~~~v~~H  112 (347)
T KOG0647|consen   41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW--------DLASGQVSQVAAH  112 (347)
T ss_pred             ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE--------EccCCCeeeeeec
Confidence            45668889999999998774 122334457889999999975  589999999999996        8888888777766


Q ss_pred             CCceeEeeeeCC----EEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAVYN----KVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v~~----~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..|||++.-+++    .|.-|+- ..+.--|+++-....+++
T Consensus       113 d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~  154 (347)
T KOG0647|consen  113 DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ  154 (347)
T ss_pred             ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence            689999988853    4455665 467777777666555543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.58  E-value=0.0032  Score=55.03  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=70.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      ...+-.|+.||.|.+|+...  .+.+..++ +.+.|+++.++.   +.++.|..||++.+|+.        .....+ .+
T Consensus       545 ~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~--------~~~~~~~~~  614 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI--------NQGVSIGTI  614 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC--------CCCcEEEEE
Confidence            34677888999999999886  46666664 458999999963   46788999999999854        332221 22


Q ss_pred             CCCCCceeEeeee---CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GLPHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~~~pV~~m~~v---~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .. ..+|.|+...   +..+..|+. +.|+++|..+.+
T Consensus       615 ~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        615 KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            22 2578888764   467777777 689999998764

>KOG0646|consensus

Probab=97.56  E-value=0.0016  Score=53.99  Aligned_cols=103  Identities=22%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             CCCeEEEEecCCeEEEEECCcc-------cceeeeeEec-CCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQ-------WRRCLHSIQL-KDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~-------~~~~l~~~~l-~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~   71 (121)
                      ...-+.-|++||.+++|++.+-       ..+.++.+.- .-+|++++.-.    .++|.+..|-++-+|        |+
T Consensus       134 dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w--------dl  205 (476)
T KOG0646|consen  134 DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW--------DL  205 (476)
T ss_pred             CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE--------Ee
Confidence            3456778999999999985431       2245666643 46999999754    499999999999998        66


Q ss_pred             CCceE-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         72 SKYHT-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        72 ~~~~~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      ..-.+ +++..| .|+.||++-  +..+|+|.. .+|++++..++.-+
T Consensus       206 S~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~  252 (476)
T KOG0646|consen  206 SLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ  252 (476)
T ss_pred             ccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence            55555 466655 789998866  688999999 78999998887643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.53  E-value=0.0056  Score=49.53  Aligned_cols=103  Identities=13%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-----------cCCCEEEEEEe--CCEEEEE-ecCC---------cEEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-----------LKDSVLNIVHV--QGRVVCA-LADG---------SVAI   60 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-----------l~~~V~~i~~~--~~~v~v~-LanG---------~l~V   60 (121)
                      ....+|+-.| |.|++++.....-+.+..+.           -|....-+.++  .+++||+ +..+         .|+|
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            3457788777 99999995442112222222           12222235555  6799994 4332         6999


Q ss_pred             EEcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CC-EEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         61 FRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YN-KVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        61 y~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~-~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      +        |....+.   |.+|.   ++..|.+.  ++ .||..++  +.|.|||+.+++..+++
T Consensus       284 i--------D~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       284 V--------DAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             E--------ECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            8        6777766   46666   45555655  57 8999996  67999999999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0294|consensus

Probab=97.52  E-value=0.0014  Score=52.39  Aligned_cols=100  Identities=15%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .+.+--|+.|..|+||+...  ++.+..+-. .++|+++++..+    .+..|..||.+++|+.   |.|.  -.+.++-
T Consensus        53 ~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~---~~W~--~~~slK~  125 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV---GSWE--LLKSLKA  125 (362)
T ss_pred             ceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc---CCeE--Eeeeecc
Confidence            45566788899999999998  678888754 489999998754    5999999999999854   3342  1122222


Q ss_pred             CCCCCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCc
Q psy16019         80 GLPHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~  113 (121)
                      ..  .-|+-+.+.. ++|..+-|  ..+...|.-+++
T Consensus       126 H~--~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  126 HK--GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             cc--cccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            22  3366666663 56666555  245555544443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.51  E-value=0.0029  Score=49.44  Aligned_cols=95  Identities=15%  Similarity=0.292  Sum_probs=67.9

Q ss_pred             CCeEEEEec---------C-CeEEEEECCcc----cc-eeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCC
Q psy16019          5 LPTMWLGSQ---------N-GSVFVHSAVSQ----WR-RCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQW   69 (121)
Q Consensus         5 ~~tvwiGt~---------~-g~I~v~~~~~~----~~-~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~w   69 (121)
                      .+.+.+||.         . |+|++|...+.    .+ +.+++..++++|++|...+++ +++..++.|.+|+-..+.  
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~--  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSK--  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTS--
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcc--
Confidence            456778875         2 99999998883    11 235566788999999999999 555566899999654322  


Q ss_pred             CCCCceEEEeC--CCCCceeEeeeeCCEEEEEeC-CeEEEE
Q psy16019         70 DLSKYHTVTLG--LPHHSVRSLAAVYNKVWCGYK-NKIHVV  107 (121)
Q Consensus        70 d~~~~~~i~lg--~~~~pV~~m~~v~~~lw~~~g-n~I~Vi  107 (121)
                           ++++.+  +.+..+.+|...++.+++|.- ..|.++
T Consensus       119 -----~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen  119 -----TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL  154 (321)
T ss_dssp             -----SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred             -----cchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence                 243332  223588899999999999988 678877

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=97.51  E-value=0.00065  Score=52.78  Aligned_cols=58  Identities=24%  Similarity=0.420  Sum_probs=47.9

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE------eCCEEEEEecCCcEEEEEc
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH------VQGRVVCALADGSVAIFRR   63 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~------~~~~v~v~LanG~l~Vy~r   63 (121)
                      +.+.+-+|||+|.|||.+...  ...++++++|+....|..      .+.+++|+.-||.|...+|
T Consensus       194 a~scLViGTE~~~i~iLd~~a--f~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~irr  257 (257)
T PF14779_consen  194 AVSCLVIGTESGEIYILDPQA--FTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTIRR  257 (257)
T ss_pred             CcceEEEEecCCeEEEECchh--heeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEEeC
Confidence            456899999999999999888  577889999975445542      4679999999999998865

>KOG0291|consensus

Probab=97.48  E-value=0.0038  Score=54.70  Aligned_cols=106  Identities=19%  Similarity=0.255  Sum_probs=78.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-E
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-V   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i   77 (121)
                      ++....|-.|.+||+|-||+..+  --|..++. +.+.|+-+++.  ++-++.+.-||+|-.|        |+..++- -
T Consensus       359 SpDgq~iaTG~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw--------DlkRYrNfR  428 (893)
T KOG0291|consen  359 SPDGQLIATGAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW--------DLKRYRNFR  428 (893)
T ss_pred             CCCCcEEEeccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee--------eecccceee
Confidence            45566888999999999999887  46999994 55888777764  6789999999999996        7777643 2


Q ss_pred             EeCCC-CCceeEeeee--CCEEEEEeCC--eEEEEeCCCCcEEEE
Q psy16019         78 TLGLP-HHSVRSLAAV--YNKVWCGYKN--KIHVVDPKSLDVIRP  117 (121)
Q Consensus        78 ~lg~~-~~pV~~m~~v--~~~lw~~~gn--~I~Vi~~~tl~i~~~  117 (121)
                      ++-.| +.-..|++.-  +.-+.+|..+  .|+|-+..|+++...
T Consensus       429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI  473 (893)
T ss_pred             eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence            44444 2344566655  4455666666  699999999988653

>KOG1446|consensus

Probab=97.47  E-value=0.0067  Score=48.12  Aligned_cols=114  Identities=14%  Similarity=0.113  Sum_probs=82.3

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCc--EEEEEcCCCCCCCCCCceEEE
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGS--VAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~--l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      |+++.++..-|+.|.+|..|++..  ++|..-+.++... ...|...-++.|+++|+  |-+|....-   |-.+..++.
T Consensus       108 ~sP~~d~FlS~S~D~tvrLWDlR~--~~cqg~l~~~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs~---dkgPF~tf~  181 (311)
T KOG1446|consen  108 VSPKDDTFLSSSLDKTVRLWDLRV--KKCQGLLNLSGRP-IAAFDPEGLIFALANGSELIKLYDLRSF---DKGPFTTFS  181 (311)
T ss_pred             ecCCCCeEEecccCCeEEeeEecC--CCCceEEecCCCc-ceeECCCCcEEEEecCCCeEEEEEeccc---CCCCceeEc
Confidence            566778888999999999999996  7888888887654 34566554555555554  788866432   334456677


Q ss_pred             eCCC-CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLP-HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~-~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++++ ..-..-|...  ++.+-.+.. +.++++|+.++.++.+|+.
T Consensus       182 i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~  227 (311)
T KOG1446|consen  182 ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG  227 (311)
T ss_pred             cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence            7743 3445556655  577777777 6899999999999999874

>KOG0273|consensus

Probab=97.40  E-value=0.005  Score=51.39  Aligned_cols=111  Identities=17%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             CeEEEEec-------CCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCC--------
Q psy16019          6 PTMWLGSQ-------NGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDG--------   67 (121)
Q Consensus         6 ~tvwiGt~-------~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g--------   67 (121)
                      +--|++-+       ||.|+||...+  +.+..++. ++..|-+|+|+  ...+..+..||+|-+|++..++        
T Consensus       323 DVdW~~~~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H  400 (524)
T KOG0273|consen  323 DVDWQSNDEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH  400 (524)
T ss_pred             ceEEecCceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence            34566544       79999999988  66777774 55899999999  5566667778999999976533        


Q ss_pred             -----------------------------------CCCCCCceE-EEeCCCCCceeEeeeeCCEEEEEeC---CeEEEEe
Q psy16019         68 -----------------------------------QWDLSKYHT-VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVD  108 (121)
Q Consensus        68 -----------------------------------~wd~~~~~~-i~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~  108 (121)
                                                         .||..++.- .++-.-+.||.++...++.=+.++|   ..|.+.+
T Consensus       401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence                                               123222211 1221224677777777433333444   4688888


Q ss_pred             CCCCcEEEEE
Q psy16019        109 PKSLDVIRPV  118 (121)
Q Consensus       109 ~~tl~i~~~~  118 (121)
                      +.++++.|+.
T Consensus       481 ~~~~~l~~s~  490 (524)
T KOG0273|consen  481 TKTGKLVKSY  490 (524)
T ss_pred             ccchheeEee
Confidence            8888777763

>KOG0275|consensus

Probab=97.32  E-value=0.0014  Score=52.95  Aligned_cols=104  Identities=18%  Similarity=0.270  Sum_probs=68.1

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEe----------------------------------------
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHV----------------------------------------   45 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~----------------------------------------   45 (121)
                      +--|++||+|-||....  -+|+.++.  +...|+|+.+.                                        
T Consensus       278 lAsGsqDGkIKvWri~t--G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIET--GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             hhccCcCCcEEEEEEec--chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            34588899999988766  36666663  33566666543                                        


Q ss_pred             ----CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC---CEE-EEEeCCeEEEEeCCCCcEEEE
Q psy16019         46 ----QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY---NKV-WCGYKNKIHVVDPKSLDVIRP  117 (121)
Q Consensus        46 ----~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~---~~l-w~~~gn~I~Vi~~~tl~i~~~  117 (121)
                          +.++..|.+||++-||+-....+     ..+++.+....||.++.+..   ..+ -|--.|.|+|++. .+++.|+
T Consensus       356 ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrs  429 (508)
T KOG0275|consen  356 FTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRS  429 (508)
T ss_pred             EcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEee
Confidence                45789999999999985543321     11222222248888877763   334 4444489999976 7889888


Q ss_pred             EE
Q psy16019        118 VT  119 (121)
Q Consensus       118 ~~  119 (121)
                      |.
T Consensus       430 fs  431 (508)
T KOG0275|consen  430 FS  431 (508)
T ss_pred             ec
Confidence            75

>KOG0291|consensus

Probab=97.26  E-value=0.0063  Score=53.35  Aligned_cols=119  Identities=17%  Similarity=0.189  Sum_probs=89.0

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCC-------CCCCC
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPD-------GQWDL   71 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~-------g~wd~   71 (121)
                      |+...+.+.-|+=|..|-+|+.-+. +....++.++.-|+.+.+.  +.++.||..||.|++|+-...       |.-|+
T Consensus       486 f~~~~~~LaS~SWDkTVRiW~if~s-~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~  564 (893)
T KOG0291|consen  486 FSPDGSLLASGSWDKTVRIWDIFSS-SGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL  564 (893)
T ss_pred             EccccCeEEeccccceEEEEEeecc-CceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhc
Confidence            3456678888999999999998874 2357788899889999988  779999999999999987642       33344


Q ss_pred             CCceE----EEeCC--CCCceeEeeee--CCE-EEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019         72 SKYHT----VTLGL--PHHSVRSLAAV--YNK-VWCGYKNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        72 ~~~~~----i~lg~--~~~pV~~m~~v--~~~-lw~~~gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ..-+.    ++-..  ..++.+.|...  ++. |.+|..|.|-+++..+.-+.++|++
T Consensus       565 ~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  565 SGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             cccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence            33322    22221  14788888877  444 3456669999999999999999986

>KOG0279|consensus

Probab=97.19  E-value=0.0091  Score=47.11  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCc-EEEEEcCCCCCCCCCCceEE---EeCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGS-VAIFRRGPDGQWDLSKYHTV---TLGL   81 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~-l~Vy~r~~~g~wd~~~~~~i---~lg~   81 (121)
                      ...--|.+||.++++++.+  ++++.++..-+.|.++.+.+++-..+.+-|+ |-||        |+++...+   ++..
T Consensus       205 slcasGgkdg~~~LwdL~~--~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIw--------dl~~~~~v~~l~~d~  274 (315)
T KOG0279|consen  205 SLCASGGKDGEAMLWDLNE--GKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIW--------DLESKAVVEELKLDG  274 (315)
T ss_pred             CEEecCCCCceEEEEEccC--CceeEeccCCCeEeeEEecCCceeEeeccCCceEEE--------eccchhhhhhccccc
Confidence            3344488999999999999  7888988888999999999887555554443 7776        55554332   2211


Q ss_pred             -----CCCceeEeeee----CCEEEEEeC-CeEEEE
Q psy16019         82 -----PHHSVRSLAAV----YNKVWCGYK-NKIHVV  107 (121)
Q Consensus        82 -----~~~pV~~m~~v----~~~lw~~~g-n~I~Vi  107 (121)
                           ....++|+...    +.+|++|+. |-|.+.
T Consensus       275 ~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  275 IGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             cccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence                 13467787766    689999999 456554

>KOG4547|consensus

Probab=97.19  E-value=0.0091  Score=50.56  Aligned_cols=107  Identities=21%  Similarity=0.171  Sum_probs=77.1

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeE---ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI---QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~---~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      |+..+.-+-+||..|.|.+|+....  +..+.+   .+++.|.+|....  +.+|.+.||+.+..+        +...-.
T Consensus        66 ~s~~t~~lvlgt~~g~v~~ys~~~g--~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~--------~~~~~~  135 (541)
T KOG4547|consen   66 ASLDTSMLVLGTPQGSVLLYSVAGG--EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYI--------LEKEKV  135 (541)
T ss_pred             ccCCceEEEeecCCccEEEEEecCC--eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEE--------ecccce
Confidence            5677788999999999999998873  333333   5778999999654  479999999998886        455544


Q ss_pred             EEE---eCCCCCceeEeeeeC-CEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019         76 TVT---LGLPHHSVRSLAAVY-NKVWCGYKNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        76 ~i~---lg~~~~pV~~m~~v~-~~lw~~~gn~I~Vi~~~tl~i~~~~~  119 (121)
                      .+.   .+.  ..+.++.+.. +.+-...+.+|.++|.+|.++...|+
T Consensus       136 ~~~~~~~~~--~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  136 IIRIWKEQK--PLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFT  181 (541)
T ss_pred             eeeeeccCC--CccceEEEcCCCCEEEeccceEEEEEccCceEEEEec
Confidence            443   333  4455566554 33333445789999999999999885

>KOG1539|consensus

Probab=97.17  E-value=0.0013  Score=57.79  Aligned_cols=105  Identities=21%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeE----ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI----QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~----~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      +.=+|...+|+..|.|-+||..+.  -..+++    .+..+|+.+....  ..+..|.++|.+..|        |+..-.
T Consensus       457 s~CGNF~~IG~S~G~Id~fNmQSG--i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw--------~f~~k~  526 (910)
T KOG1539|consen  457 SFCGNFVFIGYSKGTIDRFNMQSG--IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW--------DFKKKV  526 (910)
T ss_pred             eccCceEEEeccCCeEEEEEcccC--eeecccccCccccCceeEEEecCCCceEEEccCcceEEEE--------ecCCcc
Confidence            344678999999999999999994  335566    2336999998764  358889999999987        444433


Q ss_pred             ---EEEeCCCCCceeEeeeeC--CEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         76 ---TVTLGLPHHSVRSLAAVY--NKVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        76 ---~i~lg~~~~pV~~m~~v~--~~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                         .+.+|.   ++.+|....  +-+..+|.. +|.++|..|.++.|.|.
T Consensus       527 l~~~l~l~~---~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~  573 (910)
T KOG1539|consen  527 LKKSLRLGS---SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW  573 (910)
T ss_pred             eeeeeccCC---CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence               356666   777888773  667788995 89999999999998774

>KOG0269|consensus

Probab=97.16  E-value=0.0026  Score=55.66  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=76.9

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE--
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT--   76 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~--   76 (121)
                      +..+.+.-|+|||.|-+|+..+  ++...+++-. ++|-+.++.   ++..+++-.+|.|-.|        |+..|..  
T Consensus       144 tep~iliSGSQDg~vK~~DlR~--~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlW--------DlRqp~r~~  213 (839)
T KOG0269|consen  144 TEPNILISGSQDGTVKCWDLRS--KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLW--------DLRQPDRCE  213 (839)
T ss_pred             CCccEEEecCCCceEEEEeeec--ccccccccccchhhhceeeccCCCceEEEecCCceEEEe--------eccCchhHH
Confidence            4456788899999999999998  5666665544 566666654   4455555566777775        8877744  


Q ss_pred             EEeCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEE
Q psy16019         77 VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~  118 (121)
                      +++-.-..||-|+-...++.|.|.|   .+|.|-|..+.+....+
T Consensus       214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~  258 (839)
T KOG0269|consen  214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH  258 (839)
T ss_pred             HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence            4444335899999999999999888   47999999876655443

>KOG0310|consensus

Probab=97.16  E-value=0.012  Score=49.09  Aligned_cols=104  Identities=15%  Similarity=0.215  Sum_probs=77.2

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEEEcCCCCCCCCC-CceEE-EeCCCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIFRRGPDGQWDLS-KYHTV-TLGLPH   83 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~-~~~~i-~lg~~~   83 (121)
                      -+.-|+-||.|-+|++.... ....++.+..+|-++++.++ ..+|.-+-..+-||        |+- .-+++ ....-+
T Consensus       168 ivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVW--------Dl~~G~qll~~~~~H~  238 (487)
T KOG0310|consen  168 IVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVW--------DLTTGGQLLTSMFNHN  238 (487)
T ss_pred             EEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEE--------EecCCceehhhhhccc
Confidence            68889999999999998842 45677788889999998877 44444444456665        665 33343 334346


Q ss_pred             CceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         84 HSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        84 ~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.|+||.+..  .+|..|.= .+|.|||..++++.+++.
T Consensus       239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~  277 (487)
T KOG0310|consen  239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK  277 (487)
T ss_pred             ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence            8999999996  67766555 689999999999999875

>PTZ00420 coronin; Provisional

Probab=97.15  E-value=0.026  Score=48.38  Aligned_cols=105  Identities=7%  Similarity=0.063  Sum_probs=68.1

Q ss_pred             EecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCC--CCCCCceEEEeCCCCC
Q psy16019         11 GSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQ--WDLSKYHTVTLGLPHH   84 (121)
Q Consensus        11 Gt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~--wd~~~~~~i~lg~~~~   84 (121)
                      |..+|.|.+++...  +..+..++ ++++|+++.++.   +.++.|..||+|.+|.-..++.  .....+ ...+.....
T Consensus        50 GG~~gvI~L~~~~r--~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p-~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMR--KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP-QCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCC--CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc-eEEeecCCC
Confidence            34466777777654  34566664 458999999974   5788899999999997654321  011111 122322247


Q ss_pred             ceeEeeeeC--CEEE-EEeC-CeEEEEeCCCCcEEEEE
Q psy16019         85 SVRSLAAVY--NKVW-CGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        85 pV~~m~~v~--~~lw-~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      +|.++....  ..+. .|+. +.|.+.|.++.+...++
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i  164 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI  164 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            899999884  3443 3333 78999999998866554

>PTZ00421 coronin; Provisional

Probab=97.14  E-value=0.025  Score=47.52  Aligned_cols=99  Identities=15%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg   80 (121)
                      .+.+..|+.||.|.||+...  .+.+..+. +++.|.++.++  .+.++.|..||+|.+|        |+.+.+.+ ++.
T Consensus       138 ~~iLaSgs~DgtVrIWDl~t--g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw--------D~rsg~~v~tl~  207 (493)
T PTZ00421        138 MNVLASAGADMVVNVWDVER--GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII--------DPRDGTIVSSVE  207 (493)
T ss_pred             CCEEEEEeCCCEEEEEECCC--CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEE--------ECCCCcEEEEEe
Confidence            35788999999999999887  35666665 56899999986  4468888899999998        44443332 232


Q ss_pred             CCC--CceeEeeeeC-CEEE-EEeC----CeEEEEeCCCCc
Q psy16019         81 LPH--HSVRSLAAVY-NKVW-CGYK----NKIHVVDPKSLD  113 (121)
Q Consensus        81 ~~~--~pV~~m~~v~-~~lw-~~~g----n~I~Vi~~~tl~  113 (121)
                      ...  ...+++-... +.+. +|..    +.|.+.|..+++
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            211  2233433222 3433 2321    479999988764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.14  E-value=0.0077  Score=47.01  Aligned_cols=99  Identities=16%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             CeEEEEECCcccceeeeeEecC--CCEEEEEEe---------CCEEEEEec---------C-CcEEEEEcCCCCCCCCCC
Q psy16019         15 GSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV---------QGRVVCALA---------D-GSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus        15 g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~---------~~~v~v~La---------n-G~l~Vy~r~~~g~wd~~~   73 (121)
                      ..|.+++..+  .+.+.++.++  ..|+|++..         ...+.||.+         . |.|.+|+-...+ +.-..
T Consensus         2 s~i~l~d~~~--~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~-~~~~~   78 (321)
T PF03178_consen    2 SSIRLVDPTT--FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP-ENNFK   78 (321)
T ss_dssp             -EEEEEETTT--SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------E
T ss_pred             cEEEEEeCCC--CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc-ccceE
Confidence            4678888776  3567888776  377776653         246777776         3 999999776541 11112


Q ss_pred             ceEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCc-EEE
Q psy16019         74 YHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLD-VIR  116 (121)
Q Consensus        74 ~~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~-i~~  116 (121)
                      .+.+.--.-+.||.+|...++.|.+|.|++|++++...-+ +.+
T Consensus        79 l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~  122 (321)
T PF03178_consen   79 LKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLK  122 (321)
T ss_dssp             EEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEE
T ss_pred             EEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchh
Confidence            2222111114799999999999999999999999887776 443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0315|consensus

Probab=97.09  E-value=0.024  Score=44.41  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCC-CCCCCceE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQ-WDLSKYHT   76 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~-wd~~~~~~   76 (121)
                      +.|.-+..|+++|.|.||++.++  .|.+. -+|   .+|.++.-.  ...+-++-.-|+..||+--.+.. =.+.+.+-
T Consensus       134 pnQteLis~dqsg~irvWDl~~~--~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k  210 (311)
T KOG0315|consen  134 PNQTELISGDQSGNIRVWDLGEN--SCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK  210 (311)
T ss_pred             CCcceEEeecCCCcEEEEEccCC--ccccc-cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence            46778999999999999999984  33332 234   377777765  33566666669999997654210 01111111


Q ss_pred             EEeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCC-cEEEEEE
Q psy16019         77 VTLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSL-DVIRPVT  119 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl-~i~~~~~  119 (121)
                      ++... .+-.+|++.-+++.-+.|+  ..++|.+.+++ +.|++++
T Consensus       211 ~~ah~-~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~  255 (311)
T KOG0315|consen  211 FQAHN-GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT  255 (311)
T ss_pred             eeccc-ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee
Confidence            23322 3567776666666555555  57999999998 6666654

>KOG0649|consensus

Probab=97.08  E-value=0.017  Score=45.16  Aligned_cols=107  Identities=18%  Similarity=0.282  Sum_probs=77.7

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL-   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l-   79 (121)
                      ..+++..+..||.||-+++++.  +....++ ++|-|.|+.-  ...++|.|..||++-||        |+...+-++. 
T Consensus       125 ~enSi~~AgGD~~~y~~dlE~G--~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvW--------d~kt~k~v~~i  194 (325)
T KOG0649|consen  125 SENSILFAGGDGVIYQVDLEDG--RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVW--------DTKTQKHVSMI  194 (325)
T ss_pred             CCCcEEEecCCeEEEEEEecCC--EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEE--------eccccceeEEe
Confidence            3456666678999999999883  4444454 5688888876  35699999999999997        5555433322 


Q ss_pred             C--------CC--CCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019         80 G--------LP--HHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        80 g--------~~--~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      +        .|  ..=|.|++..++=|-||-|++..+.+..+.+....|.+
T Consensus       195 e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             ccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec
Confidence            2        12  23466777778888888889999999999888777754

>KOG0646|consensus

Probab=97.06  E-value=0.013  Score=48.63  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=74.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCC-CCCceE-EEe
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWD-LSKYHT-VTL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd-~~~~~~-i~l   79 (121)
                      ...+..||+.|.||+|.+.+.  +-+..+.-+ .+|+||++.++  .+|.|.-||.|.||.-..--.=| ..+++- -.+
T Consensus        93 G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             ceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            346777889999999998873  334444323 79999999854  78899999999999764211000 002222 234


Q ss_pred             CCCCCceeEeeee----CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         80 GLPHHSVRSLAAV----YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~~~pV~~m~~v----~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      .+-.-||+.|.+-    +.+|+-++. +.+.+.|...+.+..++
T Consensus       171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence            4444788887765    357777777 56888888777766554

>KOG2321|consensus

Probab=97.06  E-value=0.003  Score=53.96  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=47.7

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCC------------CEEEEEEeCC--EEEEEecCCcEEEEEc
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD------------SVLNIVHVQG--RVVCALADGSVAIFRR   63 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~------------~V~~i~~~~~--~v~v~LanG~l~Vy~r   63 (121)
                      |......+..||++|.+-.|+..+  |....++..+.            +|+.|.+.++  .+=||+++|.+.+|.-
T Consensus       183 in~~hgLla~Gt~~g~VEfwDpR~--ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  183 INEEHGLLACGTEDGVVEFWDPRD--KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL  257 (703)
T ss_pred             ecCccceEEecccCceEEEecchh--hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence            345677899999999999999887  54444444332            4999999984  6889999999999943

>KOG0310|consensus

Probab=97.03  E-value=0.0089  Score=49.86  Aligned_cols=102  Identities=23%  Similarity=0.254  Sum_probs=77.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~   78 (121)
                      +.+..+..|-++|.+.||+..+  |..+..++ ++++|..++|  .++.+|+..+|+.+.-|       ||++.-.+ +.
T Consensus        78 ~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~-------~d~s~a~v~~~  148 (487)
T KOG0310|consen   78 SDGRLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY-------WDLSTAYVQAE  148 (487)
T ss_pred             cCCeEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE-------EEcCCcEEEEE
Confidence            3456788999999999999555  55566664 4467777776  47899999999999998       78877655 35


Q ss_pred             eCCCCCceeEeeee--CCEEEE--EeCCeEEEEeCCCCc
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWC--GYKNKIHVVDPKSLD  113 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~--~~gn~I~Vi~~~tl~  113 (121)
                      +.....=|||...+  ++.+.+  ||-++|.+.|+.+..
T Consensus       149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~  187 (487)
T KOG0310|consen  149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT  187 (487)
T ss_pred             ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence            65556889998877  466655  444899999999983

>KOG0266|consensus

Probab=97.03  E-value=0.035  Score=45.82  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=77.5

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCce--EE-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYH--TV-   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~--~i-   77 (121)
                      ....+.-|+.|+.|.||+...  -+++..++.. +.|.++.+.  ++.+.+|..||.|.||        |+....  .+ 
T Consensus       257 ~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw--------d~~~~~~~~~~  326 (456)
T KOG0266|consen  257 DGNLLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW--------DLETGSKLCLK  326 (456)
T ss_pred             CCCEEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE--------ECCCCceeeee
Confidence            346889999999999999987  5788888655 789888876  4567777779999998        444444  11 


Q ss_pred             EeCCC-CC-ceeEeeee--CCEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019         78 TLGLP-HH-SVRSLAAV--YNKVWCGYKN-KIHVVDPKSLDVIRPV  118 (121)
Q Consensus        78 ~lg~~-~~-pV~~m~~v--~~~lw~~~gn-~I~Vi~~~tl~i~~~~  118 (121)
                      .+... .. |+++....  ++.++.++.+ .+.+.|..+++..+.+
T Consensus       327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            22221 12 79998876  5889999986 8999888877666544

>KOG0281|consensus

Probab=97.02  E-value=0.00076  Score=54.80  Aligned_cols=110  Identities=17%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC------------------
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG------------------   67 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g------------------   67 (121)
                      .|--|..|..|-||+-++  ..|+..+ -+.++|+|+.|.+.-+..|.+|.++.||.-+.+.                  
T Consensus       209 kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~  286 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS  286 (499)
T ss_pred             hhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence            455688888999999887  6777766 4668999999998777778889999998765422                  


Q ss_pred             --------------CCCCCCceEEEe-----CCCCCceeEeeeeCCEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         68 --------------QWDLSKYHTVTL-----GLPHHSVRSLAAVYNKVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        68 --------------~wd~~~~~~i~l-----g~~~~pV~~m~~v~~~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                                    .||..+|.-+++     |. ...|......++-+--|+|+ .|.+-+..|++..+.+.
T Consensus       287 ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~  357 (499)
T KOG0281|consen  287 NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN  357 (499)
T ss_pred             CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccccceEEEecCCceEEEEeccceeeehhhh
Confidence                          355555533211     11 13333333334444456664 57777777777666543

>KOG0268|consensus

Probab=96.99  E-value=0.0062  Score=49.61  Aligned_cols=110  Identities=19%  Similarity=0.281  Sum_probs=81.3

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcC--------------------
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRG--------------------   64 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~--------------------   64 (121)
                      .++..|+-||.+-||++.+  +.|.++++-. +.|..|.+..+.+|-+..|-+|-.|.-.                    
T Consensus        80 s~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             hhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence            5788999999999999999  7899999876 6999999998888888888877776510                    


Q ss_pred             ------CCC----CCCCCC--c-eEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         65 ------PDG----QWDLSK--Y-HTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        65 ------~~g----~wd~~~--~-~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                            +.|    .||...  | +.++.|.  ..|.|+..+  +..+-++|+  +.|.++|+.+.++.++.-
T Consensus       158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~--Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi  227 (433)
T KOG0268|consen  158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGA--DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI  227 (433)
T ss_pred             ccccccccCceeeecccccCCccceeecCC--CceeEEecCCCcchheeeeccCCceEEEecccCCccceee
Confidence                  012    466532  2 3356666  456666555  566666665  789999999999887653

>KOG3881|consensus

Probab=96.98  E-value=0.0095  Score=48.68  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=81.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEE--EeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE--e
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIV--HVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT--L   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~--~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~--l   79 (121)
                      +..+-.+|..+.+-+|+.... |+++.+|... .+++++-  +..+.||+|-+-|.|+.|        |+..-+++-  +
T Consensus       216 ~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F--------D~r~~kl~g~~~  286 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF--------DLRGGKLLGCGL  286 (412)
T ss_pred             CceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhhee--------cccCceeecccc
Confidence            667888999999999998743 6788888654 5666654  568899999999999999        777777753  3


Q ss_pred             CCCCCceeEeeeeCC-EEEEEeC--CeEEEEeCCCCcEEE
Q psy16019         80 GLPHHSVRSLAAVYN-KVWCGYK--NKIHVVDPKSLDVIR  116 (121)
Q Consensus        80 g~~~~pV~~m~~v~~-~lw~~~g--n~I~Vi~~~tl~i~~  116 (121)
                      +.-.-+||++....+ .+-++||  -.+.|+|..|.++.+
T Consensus       287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence            333578999988865 8999999  469999999976654

>KOG0283|consensus

Probab=96.96  E-value=0.023  Score=49.72  Aligned_cols=107  Identities=15%  Similarity=0.169  Sum_probs=83.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      .+.+.-.+-|..+-+|....  ++||+.|.++|-|||+.++   +++..-|.-||.+-+|        ++.+.+++---+
T Consensus       380 n~fLLSSSMDKTVRLWh~~~--~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiW--------sI~d~~Vv~W~D  449 (712)
T KOG0283|consen  380 NNFLLSSSMDKTVRLWHPGR--KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLW--------SISDKKVVDWND  449 (712)
T ss_pred             CCeeEeccccccEEeecCCC--cceeeEEecCCeeEEEEecccCCCcEeecccccceEEe--------ecCcCeeEeehh
Confidence            34566667788889998886  7899999999999999997   5678888999999996        677777765444


Q ss_pred             CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEeC
Q psy16019         82 PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTIR  121 (121)
Q Consensus        82 ~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~~  121 (121)
                      -.+=|+.+.+.  ++-.-+|+= ...+++++..++.+..+++.
T Consensus       450 l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  450 LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            44566666655  444555665 68999999999999988863

>KOG0306|consensus

Probab=96.96  E-value=0.0097  Score=52.21  Aligned_cols=108  Identities=15%  Similarity=0.099  Sum_probs=76.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcc-----cc-e-----eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQ-----WR-R-----CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQW   69 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~-----~~-~-----~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~w   69 (121)
                      +.+.-.-.|+-|..+-+|+..-.     .+ |     ...++.+++.|+|+.+.  +..+.|||-|.++-||        
T Consensus       464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy--------  535 (888)
T KOG0306|consen  464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY--------  535 (888)
T ss_pred             CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE--------
Confidence            44555667888889988873321     11 2     12567899999999999  5589999999999999        


Q ss_pred             CCCCceE-EEeCCCCCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         70 DLSKYHT-VTLGLPHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        70 d~~~~~~-i~lg~~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      -+++.++ +++=--.-||+||-+.. +++-+.|+  .+|.|--..=++-.++|
T Consensus       536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~  588 (888)
T KOG0306|consen  536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF  588 (888)
T ss_pred             EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh
Confidence            4667766 56633348999999994 55666555  56887766555555554

>KOG2055|consensus

Probab=96.96  E-value=0.011  Score=49.28  Aligned_cols=100  Identities=13%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      +..++.+-+...+|.|++..+.+  ++-+.++++++.|.++++.  ...+++..++|.|.||        |+..++.+.-
T Consensus       312 Shd~~fia~~G~~G~I~lLhakT--~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~--------nl~~~~~~~r  381 (514)
T KOG2055|consen  312 SHDSNFIAIAGNNGHIHLLHAKT--KELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW--------NLRQNSCLHR  381 (514)
T ss_pred             cCCCCeEEEcccCceEEeehhhh--hhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE--------ecCCcceEEE
Confidence            55678999999999999988887  6778999999999999886  4589999999999997        6766655422


Q ss_pred             ----CCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCC
Q psy16019         80 ----GLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        80 ----g~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~t  111 (121)
                          |.....=-|+.+.+.-|++|+. .-|-|+|-++
T Consensus       382 f~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  382 FVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             EeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence                2211222244455664444444 3466776443

>KOG1188|consensus

Probab=96.94  E-value=0.0053  Score=49.47  Aligned_cols=110  Identities=15%  Similarity=0.235  Sum_probs=76.4

Q ss_pred             CCeEEEEec----CCeEEEEECCcccceeeeeE--ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          5 LPTMWLGSQ----NGSVFVHSAVSQWRRCLHSI--QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         5 ~~tvwiGt~----~g~I~v~~~~~~~~~~l~~~--~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      .+.+..|||    +-.+++|+.... ++.+..+  .+.|-|++++++   .|.+..|..||.+.+|.-+.+..-| .=.+
T Consensus       129 ~~ii~~GtE~~~s~A~v~lwDvR~~-qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-aL~~  206 (376)
T KOG1188|consen  129 KNIIACGTELTRSDASVVLWDVRSE-QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-ALLH  206 (376)
T ss_pred             CCeEEeccccccCceEEEEEEeccc-cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-hHHH
Confidence            356788887    668889998873 3335555  456899999997   5789999999999999776652111 0013


Q ss_pred             EEEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         76 TVTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +|..+.   +|.++...+   +++||=.- ....+.+.+.+.-+.+++
T Consensus       207 viN~~s---SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  207 VINHGS---SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             hhcccc---eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            345444   788888775   47888776 577777777776554443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.90  E-value=0.025  Score=47.85  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEE----------EEEeCCEEEEEecCCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLN----------IVHVQGRVVCALADGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~----------i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~   71 (121)
                      .++|++++.+|.|+-+++.+  -+.++++...  ..+..          +.+.+++||++..||.|..++...+. .|+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~T--Gk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKT--GKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCC--CceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            56899999999999999776  3667776542  22221          35667899999999999999876543 4765


Q ss_pred             CCceEEEeCCCCCcee-EeeeeCCEEEEEeC-------CeEEEEeCCCCcEEEEEE
Q psy16019         72 SKYHTVTLGLPHHSVR-SLAAVYNKVWCGYK-------NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 ~~~~~i~lg~~~~pV~-~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..... ..   ..++. .-.+.++.|+++.+       ..|+.+|++|+++.=++.
T Consensus       147 ~~~~~-~~---~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       147 KNGDY-KA---GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccc-cc---cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            43110 00   01222 22445788888763       589999999999875543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0281|consensus

Probab=96.89  E-value=0.003  Score=51.44  Aligned_cols=111  Identities=22%  Similarity=0.252  Sum_probs=83.6

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCC-------------------
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPD-------------------   66 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~-------------------   66 (121)
                      .+--|+.|..|.||+.+.  .++++++- +.++|+-+.+.++.+....-|-+++||+-.+-                   
T Consensus       249 viisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV  326 (499)
T KOG0281|consen  249 VIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  326 (499)
T ss_pred             EEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence            455688999999999888  67888874 45999999999999999999999999986540                   


Q ss_pred             ----------------CCCCCCCceEE-EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         67 ----------------GQWDLSKYHTV-TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        67 ----------------g~wd~~~~~~i-~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                                      ..|+...-+.+ ++..-...|.|+...+.-+--|++ |.|.++|++.+...+.+|
T Consensus       327 dfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLe  397 (499)
T KOG0281|consen  327 DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE  397 (499)
T ss_pred             ccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHh
Confidence                            13555554443 222224678887777777777777 899999999988766543

>KOG0278|consensus

Probab=96.89  E-value=0.014  Score=45.82  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=76.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCc
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHS   85 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~p   85 (121)
                      .++.-.++++.+.+|+...  -+..+++.++.+|+++.++.+-=++-.|+|.=..|       ||.++..+++==+-++-
T Consensus       156 ~~iLSSadd~tVRLWD~rT--gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~F-------wdaksf~~lKs~k~P~n  226 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRT--GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKF-------WDAKSFGLLKSYKMPCN  226 (334)
T ss_pred             ceEEeeccCCceEEEEecc--CcEEEEEecCCCCcceeeccCCCEEEEecCceeEE-------eccccccceeeccCccc
Confidence            3455568899999999887  47799999999999999988777888999988888       89888888754443366


Q ss_pred             eeEeeeeC-CEEEEEeCC--eEEEEeCCCCcEE
Q psy16019         86 VRSLAAVY-NKVWCGYKN--KIHVVDPKSLDVI  115 (121)
Q Consensus        86 V~~m~~v~-~~lw~~~gn--~I~Vi~~~tl~i~  115 (121)
                      |.+-.+.. ++++++-|+  .++.+|-.|++-.
T Consensus       227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi  259 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI  259 (334)
T ss_pred             cccccccCCCceEEecCcceEEEEEeccCCcee
Confidence            66655553 455555553  7899998887643

>KOG2106|consensus

Probab=96.89  E-value=0.015  Score=49.12  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=74.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH   84 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~   84 (121)
                      +++....+|+.+.+|+  +  +|.+++...-+++.|.-++ .+-|-+|.+.|...|+        |.+...++++..-++
T Consensus       381 ~q~~T~gqdk~v~lW~--~--~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~--------d~e~~~lv~~~~d~~  448 (626)
T KOG2106|consen  381 NQLLTCGQDKHVRLWN--D--HKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVL--------DTETQDLVTIHTDNE  448 (626)
T ss_pred             hheeeccCcceEEEcc--C--CceeEEEEecCceeEeeccCcceEEEeeccceEEEE--------ecccceeEEEEecCC
Confidence            3455667899999999  4  6788998888999888876 3578899999999999        677776766655468


Q ss_pred             ceeEeeee--CCEEEEEeC-CeEEEE--eCCCCcE
Q psy16019         85 SVRSLAAV--YNKVWCGYK-NKIHVV--DPKSLDV  114 (121)
Q Consensus        85 pV~~m~~v--~~~lw~~~g-n~I~Vi--~~~tl~i  114 (121)
                      |+.+|...  +..|..|+. |.|+++  +....+.
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y  483 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY  483 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence            99999877  688999999 556554  4444443

>KOG2110|consensus

Probab=96.88  E-value=0.019  Score=46.63  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=65.2

Q ss_pred             CeEEEEECCcccceeeeeEe-cCC---CEEEEEEeCCEEEEEec----CCcEEEEEcCCCCCCCCCCceEEEeCCCCCce
Q psy16019         15 GSVFVHSAVSQWRRCLHSIQ-LKD---SVLNIVHVQGRVVCALA----DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSV   86 (121)
Q Consensus        15 g~I~v~~~~~~~~~~l~~~~-l~~---~V~~i~~~~~~v~v~La----nG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV   86 (121)
                      ++||||+..+  .|.++++. .|.   .+..+-.+.+.-|.|.-    .|.|.+|+-.     ++.+..+|....  .|+
T Consensus       106 e~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-----nl~~v~~I~aH~--~~l  176 (391)
T KOG2110|consen  106 ESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-----NLQPVNTINAHK--GPL  176 (391)
T ss_pred             ccEEEEeccc--ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-----cceeeeEEEecC--Cce
Confidence            4599999999  58889884 333   45455555544455543    4899999322     233445567666  899


Q ss_pred             eEeeee--CCEEEEEeCC--eEEEEeCCCCcEEEEE
Q psy16019         87 RSLAAV--YNKVWCGYKN--KIHVVDPKSLDVIRPV  118 (121)
Q Consensus        87 ~~m~~v--~~~lw~~~gn--~I~Vi~~~tl~i~~~~  118 (121)
                      .||+..  +.-|+-|+-+  -|+||...+++...+|
T Consensus       177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF  212 (391)
T KOG2110|consen  177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF  212 (391)
T ss_pred             eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence            999998  3445555553  5999999999988877

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.87  E-value=0.04  Score=44.61  Aligned_cols=101  Identities=19%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             CCCCCeEEEEec--CCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          2 TSVLPTMWLGSQ--NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         2 ~~~~~tvwiGt~--~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      +.....+|+..+  +..+.|+++..  ++.+.++..|+...=....+..-++-+.||.+..+....+|.-   ..+...+
T Consensus       113 s~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~---~~~~~~v  187 (352)
T TIGR02658       113 TPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP---KIKPTEV  187 (352)
T ss_pred             CCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce---EEeeeee
Confidence            345567887773  57888888888  7889999999876555566777778899999999988777751   1222333


Q ss_pred             --C--CC--CCceeEeee-eCCEEEEEeCCeEEEEeC
Q psy16019         80 --G--LP--HHSVRSLAA-VYNKVWCGYKNKIHVVDP  109 (121)
Q Consensus        80 --g--~~--~~pV~~m~~-v~~~lw~~~gn~I~Vi~~  109 (121)
                        +  +|  ..|  .... -++.+|.++.++|++||.
T Consensus       188 f~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~  222 (352)
T TIGR02658       188 FHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDL  222 (352)
T ss_pred             ecCCccccccCC--ceEcCCCcEEEEecCCeEEEEec
Confidence              3  11  356  2233 478899999999999993

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2111|consensus

Probab=96.87  E-value=0.057  Score=43.30  Aligned_cols=99  Identities=10%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             CeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCC--------------C-------------
Q psy16019         15 GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPD--------------G-------------   67 (121)
Q Consensus        15 g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~--------------g-------------   67 (121)
                      .++.||+-..  ++++.++....+|..++...+++.|.|.+ .+-||.-..+              |             
T Consensus        75 NkviIWDD~k--~~~i~el~f~~~I~~V~l~r~riVvvl~~-~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   75 NKVIIWDDLK--ERCIIELSFNSEIKAVKLRRDRIVVVLEN-KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             ceEEEEeccc--CcEEEEEEeccceeeEEEcCCeEEEEecC-eEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence            3678888333  45777888888888888888888887776 6667655421              0             


Q ss_pred             ---------------CCCCC-CceEEEeCCCCCceeEeeee-CCEEEEEeC-C--eEEEEeCCCCcEEEEE
Q psy16019         68 ---------------QWDLS-KYHTVTLGLPHHSVRSLAAV-YNKVWCGYK-N--KIHVVDPKSLDVIRPV  118 (121)
Q Consensus        68 ---------------~wd~~-~~~~i~lg~~~~pV~~m~~v-~~~lw~~~g-n--~I~Vi~~~tl~i~~~~  118 (121)
                                     .|+-. +|.+|.-.+  .+|.||++. .+.+-+.++ +  -|.|+|+.+++...+|
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~  220 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL  220 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence                           01111 233344444  799999999 466655554 3  5999999999988765

>KOG0647|consensus

Probab=96.85  E-value=0.014  Score=46.60  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=72.6

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-E-EeCCC-C
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-V-TLGLP-H   83 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i-~lg~~-~   83 (121)
                      .+-.|+=|..|-.|+..+  .+.+.+++||+.|.++-.....+.||+|+-.|+||        +++++.+ . ...+| .
T Consensus       129 cl~TGSWDKTlKfWD~R~--~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy--------nL~n~~te~k~~~SpLk  198 (347)
T KOG0647|consen  129 CLVTGSWDKTLKFWDTRS--SNPVATLQLPERVYAADVLYPMAVVATAERHIAVY--------NLENPPTEFKRIESPLK  198 (347)
T ss_pred             eeEecccccceeecccCC--CCeeeeeeccceeeehhccCceeEEEecCCcEEEE--------EcCCCcchhhhhcCccc
Confidence            455677788999999887  57899999999999988888899999999999999        4544433 1 23333 4


Q ss_pred             CceeEeeeeC---CEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019         84 HSVRSLAAVY---NKVWCGYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        84 ~pV~~m~~v~---~~lw~~~gn~I~Vi~~~tl~i~~~~  118 (121)
                      .-+||++...   +.+-.+-..++.|...+....+..|
T Consensus       199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence            5788888773   3323333367877776664334444

>KOG0639|consensus

Probab=96.79  E-value=0.0034  Score=53.08  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEec--CC-CEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KD-SVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~-~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      .+...|+.+|.|-..+.||++..+..+....+..  |+ .-+.|--..+-.|+.++||+|+||        |+.+..++ 
T Consensus       474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vw--------DLhnq~~Vr  545 (705)
T KOG0639|consen  474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW--------DLHNQTLVR  545 (705)
T ss_pred             cCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE--------Ecccceeee
Confidence            4577899999999999999988865443333322  11 223344456678999999999996        88887664 


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .+.--+.-+.||.+.  +.+||-|-= |.|..-|..+..
T Consensus       546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr  584 (705)
T KOG0639|consen  546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR  584 (705)
T ss_pred             cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence            454335789999999  799998654 889888877643

>KOG1963|consensus

Probab=96.77  E-value=0.021  Score=50.37  Aligned_cols=108  Identities=12%  Similarity=0.240  Sum_probs=77.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECCc--ccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVS--QWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~--~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      +..+..+-.|--||+|+||.--.  ..+..-+.++ +.+.|.++.+.  +.++|.|..-|.|++|+...      ..+++
T Consensus       214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T------~~kqf  287 (792)
T KOG1963|consen  214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET------GKKQF  287 (792)
T ss_pred             ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC------CCccc
Confidence            44455666777899999987444  2222344454 34888888875  56899999999999997643      33455


Q ss_pred             E-EeCCCCCceeEeeeeC-CEEEE-EeC-CeEEEEeCCCCcEEEEE
Q psy16019         77 V-TLGLPHHSVRSLAAVY-NKVWC-GYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        77 i-~lg~~~~pV~~m~~v~-~~lw~-~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      + ++|.   ||+.+.... +.+++ -++ |+|.+|.+.+++++.++
T Consensus       288 LPRLgs---~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI  330 (792)
T KOG1963|consen  288 LPRLGS---PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI  330 (792)
T ss_pred             ccccCC---eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence            5 5666   899888874 45544 556 89999999999998765

>KOG0299|consensus

Probab=96.76  E-value=0.025  Score=47.09  Aligned_cols=114  Identities=16%  Similarity=0.193  Sum_probs=81.0

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCC-----------CC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGP-----------DG   67 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~-----------~g   67 (121)
                      ++.+..+-.|..|..|+||++.+  .+.++.++ +.++|.++.+..  +++|++.+|.++.+|.-+.           ++
T Consensus       211 S~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~  288 (479)
T KOG0299|consen  211 SSDGKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG  288 (479)
T ss_pred             cCCCcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence            67778888899999999999998  45666665 458999998875  4899999999999997654           11


Q ss_pred             -----------------------CCCCCCc-eEEEeCCCCCceeEeeeeC-CEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019         68 -----------------------QWDLSKY-HTVTLGLPHHSVRSLAAVY-NKVWCGYKN-KIHVVDPKSLDVIRPV  118 (121)
Q Consensus        68 -----------------------~wd~~~~-~~i~lg~~~~pV~~m~~v~-~~lw~~~gn-~I~Vi~~~tl~i~~~~  118 (121)
                                             .|++.+- ++|--|. ..++-|.+.++ .++--|+.| .|..-+....++..+.
T Consensus       289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~-~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG-EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             eeeechhcccceEEeccccceeEEEeccccceeeeeCC-CCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence                                   2444222 2232222 34888888886 556667775 6888877776665443

>KOG1273|consensus

Probab=96.74  E-value=0.039  Score=44.50  Aligned_cols=108  Identities=15%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCc--eEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKY--HTV   77 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~--~~i   77 (121)
                      +....+...+.|-+|-.|++.+.  .++++++.+++|..-.++   .|.+.|..-+-.=.+.        ++.+|  .++
T Consensus        75 ~dgr~LltsS~D~si~lwDl~~g--s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi--------~~s~~~h~~L  144 (405)
T KOG1273|consen   75 RDGRKLLTSSRDWSIKLWDLLKG--SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVI--------DFSDPKHSVL  144 (405)
T ss_pred             CCCCEeeeecCCceeEEEeccCC--CceeEEEccCccceeeeccccCCeEEEEEecCCcEEE--------EecCCceeec
Confidence            44556777788888889998874  589999999999987776   3445554444331111        12222  223


Q ss_pred             EeCCC---CCceeE--eeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         78 TLGLP---HHSVRS--LAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        78 ~lg~~---~~pV~~--m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +..++   +..-+|  ....++.++.|.+ +++.|+|++|+++..+|.+
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri  193 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI  193 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence            33332   122222  2223688999999 6999999999999998864

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.71  E-value=0.023  Score=47.33  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCC-------EE--EEEEeC-CEEEEEecCCcEEEEEcCCCC-CCCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS-------VL--NIVHVQ-GRVVCALADGSVAIFRRGPDG-QWDLSK   73 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~-------V~--~i~~~~-~~v~v~LanG~l~Vy~r~~~g-~wd~~~   73 (121)
                      .++|++++.+|.++.+++.+.  +.+++.+....       +.  -..+.+ ++||++..+|.|..++..++. .|..+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            467899999999999998763  55666554321       11  112345 899999999999999776543 465443


Q ss_pred             ceE----EEeCCCCCceeEeeeeCCEEEEEeC----------CeEEEEeCCCCcEEEEEE
Q psy16019         74 YHT----VTLGLPHHSVRSLAAVYNKVWCGYK----------NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        74 ~~~----i~lg~~~~pV~~m~~v~~~lw~~~g----------n~I~Vi~~~tl~i~~~~~  119 (121)
                      ...    ..+..  .|    .+.++.++.+.+          ..++.||++|++..=+++
T Consensus       139 ~~~~~~~~~i~s--sP----~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         139 NDQVPPGYTMTG--AP----TIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             CCCcCcceEecC--CC----EEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            211    11222  22    344567776652          579999999999876654

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.70  E-value=0.03  Score=46.65  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=73.0

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEe------------------cCCcEEEEEcCCCC-
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCAL------------------ADGSVAIFRRGPDG-   67 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~L------------------anG~l~Vy~r~~~g-   67 (121)
                      .|.+|+.+|.++.++..+-  +.+++.....  ..+....+.||++.                  .+|.|..++...+. 
T Consensus       303 ~V~~g~~~G~l~ald~~tG--~~~W~~~~~~--~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~  378 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTG--KLISARPEVE--QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV  378 (488)
T ss_pred             EEEEECCCceEEEEECCCC--cEeeEeEeec--cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence            6899999999999998773  5666655431  01223347888864                  36888888765543 


Q ss_pred             CCCCCCceE---EEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         68 QWDLSKYHT---VTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        68 ~wd~~~~~~---i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .|..+....   ..+|.| ..-..++..++.|++|+. ..++.||++|+++.-++++
T Consensus       379 ~W~~~~~~~~~~~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         379 VWEKREGTIRDSWNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             eeEeeCCccccccccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            476544311   122232 112346677899999887 6899999999999887764

The alignment model contains an 8-bladed beta-propeller.

>KOG2048|consensus

Probab=96.67  E-value=0.012  Score=50.93  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=74.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCC-CCCCCceEEEeCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQ-WDLSKYHTVTLGL   81 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~-wd~~~~~~i~lg~   81 (121)
                      +|+--|-..|.+.+|+....  ...+++++. +-|+||...  +++||.|.+||.+.-|++...+. |-..+++..    
T Consensus       216 ~tI~sgDS~G~V~FWd~~~g--TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~----  289 (691)
T KOG2048|consen  216 STIASGDSAGTVTFWDSIFG--TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL----  289 (691)
T ss_pred             CcEEEecCCceEEEEcccCc--chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC----
Confidence            46667778899999997763  446677655 689999976  46999999999999999987654 654444442    


Q ss_pred             CCCceeEeeeeCCEEEEEeCCeEEEEeC
Q psy16019         82 PHHSVRSLAAVYNKVWCGYKNKIHVVDP  109 (121)
Q Consensus        82 ~~~pV~~m~~v~~~lw~~~gn~I~Vi~~  109 (121)
                      +..-||||++.++.+..|-.....++.+
T Consensus       290 h~hdvrs~av~~~~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  290 HAHDVRSMAVIENALISGGRDFTLAICS  317 (691)
T ss_pred             CcccceeeeeecceEEecceeeEEEEcc
Confidence            2377999999999888877777766644

>KOG2055|consensus

Probab=96.67  E-value=0.06  Score=45.04  Aligned_cols=108  Identities=9%  Similarity=0.086  Sum_probs=74.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      .+.+.++..||.+.||......+..++++.+. -|+.+-.+..+   ++|++.-.--+..|.-.        .-++.+++
T Consensus       225 ~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle--------~ak~~k~~  296 (514)
T KOG2055|consen  225 APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE--------TAKVTKLK  296 (514)
T ss_pred             CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc--------cccccccc
Confidence            45788899999999999888655678999887 47877776532   67777777677777443        22222221


Q ss_pred             CC---------------------------------------------CCceeEeeee--CCEEEEEeC-CeEEEEeCCCC
Q psy16019         81 LP---------------------------------------------HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        81 ~~---------------------------------------------~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      .|                                             +..|+.++..  +++||+.++ ..|+|+|.++.
T Consensus       297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~  376 (514)
T KOG2055|consen  297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN  376 (514)
T ss_pred             CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence            11                                             1234444444  478888877 68999999999


Q ss_pred             cEEEEEEe
Q psy16019        113 DVIRPVTI  120 (121)
Q Consensus       113 ~i~~~~~~  120 (121)
                      .++|+|..
T Consensus       377 ~~~~rf~D  384 (514)
T KOG2055|consen  377 SCLHRFVD  384 (514)
T ss_pred             ceEEEEee
Confidence            99888864

>KOG0649|consensus

Probab=96.63  E-value=0.041  Score=43.07  Aligned_cols=112  Identities=15%  Similarity=0.123  Sum_probs=75.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccc--------eeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCC-------CC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWR--------RCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPD-------GQ   68 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~--------~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~-------g~   68 (121)
                      ...+..|..+|.|.|+++.+-.+        +..-..+-. .+|.++++++..+ ...+||.+.-+.=+..       ..
T Consensus        22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~l  100 (325)
T KOG0649|consen   22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRL  100 (325)
T ss_pred             ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhh
Confidence            34688999999999999766422        112222333 5999999998654 5556799887764421       24


Q ss_pred             CCCCCceEE-EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         69 WDLSKYHTV-TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        69 wd~~~~~~i-~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      |....|.-. .+..|  -|..|.+.  ++.+..+-| ..++-.|.++++|++.|.
T Consensus       101 we~~~P~~~~~~evP--eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen  101 WEVKIPMQVDAVEVP--EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             hhhcCccccCcccCC--ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence            777666443 22222  36677766  566655557 689999999999999874

>KOG0308|consensus

Probab=96.63  E-value=0.0093  Score=51.51  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-E
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-V   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i   77 (121)
                      +..+.++.-|+.||.|-+|++..  ++|++++.++ +.|=.+....  ..||.|..||.|..=        |+.+|.- .
T Consensus       222 ~dDGt~~ls~sSDgtIrlWdLgq--QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T--------dl~n~~~~t  291 (735)
T KOG0308|consen  222 NDDGTRLLSASSDGTIRLWDLGQ--QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT--------DLRNPAKST  291 (735)
T ss_pred             cCCCCeEeecCCCceEEeeeccc--cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec--------ccCCchhhe
Confidence            34566888899999999999999  7899999888 7888888764  479999999998775        6777633 2


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeCC
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYKN  102 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~gn  102 (121)
                      -+-.+..||..|...  ++.+|++..+
T Consensus       292 lick~daPv~~l~~~~~~~~~WvtTtd  318 (735)
T KOG0308|consen  292 LICKEDAPVLKLHLHEHDNSVWVTTTD  318 (735)
T ss_pred             EeecCCCchhhhhhccccCCceeeecc
Confidence            334455899999988  4778998874

>KOG0278|consensus

Probab=96.62  E-value=0.0063  Score=47.68  Aligned_cols=107  Identities=15%  Similarity=0.180  Sum_probs=78.2

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      ..+.+..|.++.-+.||+.+.+ +-+...+ ..|.+|-...+  .+..++.+.-|++|-.|        |...-..+ ++
T Consensus       111 ds~~lltgg~ekllrvfdln~p-~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW--------D~rTgt~v~sL  181 (334)
T KOG0278|consen  111 DSNYLLTGGQEKLLRVFDLNRP-KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW--------DHRTGTEVQSL  181 (334)
T ss_pred             cchhhhccchHHHhhhhhccCC-CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEE--------EeccCcEEEEE
Confidence            3456778888888889998874 2345555 56777776554  46667777788999887        44443332 33


Q ss_pred             CCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ..+ .||++|.+.  +.-|=.++|..|...|+.++++.+++++
T Consensus       182 ~~~-s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  182 EFN-SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             ecC-CCCcceeeccCCCEEEEecCceeEEeccccccceeeccC
Confidence            333 699999988  4678889999999999999999998764

>KOG0296|consensus

Probab=96.58  E-value=0.061  Score=43.83  Aligned_cols=105  Identities=12%  Similarity=0.122  Sum_probs=71.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      ...+..|++||.++.|+..+  +...+.+. ...+++|=++.  +.+++.|-.||+|.+|...+.       ..+++++.
T Consensus       160 a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-------~p~~~~~~  230 (399)
T KOG0296|consen  160 AHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-------QPLHKITQ  230 (399)
T ss_pred             ccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-------ceeEEecc
Confidence            45788899999999999988  34445553 33677776654  569999999999999854432       22344442


Q ss_pred             C-CCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         82 P-HHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        82 ~-~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      . ..+..||....  ..+-.|+. ..+++.+..++++...+
T Consensus       231 ~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  231 AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             cccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence            1 35666777663  44444444 57888888888877654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.57  E-value=0.21  Score=38.67  Aligned_cols=105  Identities=13%  Similarity=0.069  Sum_probs=62.0

Q ss_pred             CCCCeEEEEec-CCeEEEEECCcc--cceeeeeEecCCCEEEEEEe--CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceE
Q psy16019          3 SVLPTMWLGSQ-NGSVFVHSAVSQ--WRRCLHSIQLKDSVLNIVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         3 ~~~~tvwiGt~-~g~I~v~~~~~~--~~~~l~~~~l~~~V~~i~~~--~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      .....++++.. ++.|.+|+..+.  ..+.+..+.......++...  ..++||+. .++.|.||+-+.+|.-.......
T Consensus        89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028         89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence            44567888775 889999998642  11223333222234444444  44787665 45999999876554322111222


Q ss_pred             EE--eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019         77 VT--LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK  110 (121)
Q Consensus        77 i~--lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~  110 (121)
                      ++  .|.  . .|.|.+.  ++.+|+++.  +.|.+++.+
T Consensus       169 ~~~~~g~--~-p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        169 VTTVEGA--G-PRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             eecCCCC--C-CceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            33  233  3 3556655  468999986  899998876

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.57  E-value=0.09  Score=37.27  Aligned_cols=104  Identities=10%  Similarity=0.106  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCccc------ceeeeeEecCCCEEEEEEe-------CCEEEEEecCCcEEEEEcCCCCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQW------RRCLHSIQLKDSVLNIVHV-------QGRVVCALADGSVAIFRRGPDGQ   68 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~------~~~l~~~~l~~~V~~i~~~-------~~~v~v~LanG~l~Vy~r~~~g~   68 (121)
                      +...|.+-.+|.-|+|+||+..+..      ...+..+++...|++|..-       .+.+++|.++ +|.+|.-     
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV-----   80 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV-----   80 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc-----
Confidence            4567899999999999999977642      2356778889999999753       4678999888 6777843     


Q ss_pred             CCCCCceEEEeCCCCCceeEeeee-----CCEEEEEeC-CeEEEEeCCCCcE
Q psy16019         69 WDLSKYHTVTLGLPHHSVRSLAAV-----YNKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        69 wd~~~~~~i~lg~~~~pV~~m~~v-----~~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                         .+-+-+=--+.+.-|++|.+-     ...|..--| +.|.-||.+--++
T Consensus        81 ---~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   81 ---ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             ---ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence               332221000111355555442     233333333 4677777665544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.57  E-value=0.014  Score=47.24  Aligned_cols=85  Identities=21%  Similarity=0.254  Sum_probs=56.1

Q ss_pred             eeeeeEecCCCEEEEEEeC--CEEEEE----ecCCcEEEEEcCCCCCCCCCCceEE-EeCC-CCCceeEeeee--CCEEE
Q psy16019         28 RCLHSIQLKDSVLNIVHVQ--GRVVCA----LADGSVAIFRRGPDGQWDLSKYHTV-TLGL-PHHSVRSLAAV--YNKVW   97 (121)
Q Consensus        28 ~~l~~~~l~~~V~~i~~~~--~~v~v~----LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~-~~~pV~~m~~v--~~~lw   97 (121)
                      |.+++++++..-+=++.++  .++||.    -.+++|.||        |.++.+.+ ++.. +..++..|...  ++++|
T Consensus       260 kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~vi--------D~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~  331 (369)
T PF02239_consen  260 KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVI--------DKKTLKVVKTITPGPGKRVVHMEFNPDGKEVW  331 (369)
T ss_dssp             SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEE--------ECCGTEEEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred             eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEE--------ECcCcceeEEEeccCCCcEeccEECCCCCEEE
Confidence            5688888885446777664  489998    344889999        67776653 4432 12456677777  69999


Q ss_pred             EEeC--C-eEEEEeCCCCcEEEEEEe
Q psy16019         98 CGYK--N-KIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        98 ~~~g--n-~I~Vi~~~tl~i~~~~~~  120 (121)
                      .+..  + .|.|+|+.|+++++++++
T Consensus       332 vS~~~~~~~i~v~D~~Tl~~~~~i~~  357 (369)
T PF02239_consen  332 VSVWDGNGAIVVYDAKTLKEKKRIPV  357 (369)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred             EEEecCCCEEEEEECCCcEEEEEEEe
Confidence            9887  5 799999999999999874

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.57  E-value=0.042  Score=45.01  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=62.8

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC---------CCEEEEEEe----------CCEEEEEecCCcEEEEEc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---------DSVLNIVHV----------QGRVVCALADGSVAIFRR   63 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---------~~V~~i~~~----------~~~v~v~LanG~l~Vy~r   63 (121)
                      |.-+.|-+|.++|.+.|+|.+.+  ..+..-.+.         ..|++|++.          .-.+|||...|.+++|.-
T Consensus        95 S~iGFvaigy~~G~l~viD~RGP--avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkI  172 (395)
T PF08596_consen   95 SDIGFVAIGYESGSLVVIDLRGP--AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKI  172 (395)
T ss_dssp             -BTSEEEEEETTSEEEEEETTTT--EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCCcEEEEEecCCcEEEEECCCC--eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEE
Confidence            45678999999999999999874  333322222         378888764          237999999999999976


Q ss_pred             C--CCCCCCCCCceEEEeCCCCCceeEeeeeC-----------------------CEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         64 G--PDGQWDLSKYHTVTLGLPHHSVRSLAAVY-----------------------NKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        64 ~--~~g~wd~~~~~~i~lg~~~~pV~~m~~v~-----------------------~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      .  .+|.|...-.......+  .||..|.+.+                       ..++..++ ..|+|+.+.+.+--++
T Consensus       173 lp~~~g~f~v~~~~~~~~~~--~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K  250 (395)
T PF08596_consen  173 LPSSNGRFSVQFAGATTNHD--SPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHK  250 (395)
T ss_dssp             EE-GGG-EEEEEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEE
T ss_pred             ecCCCCceEEEEeeccccCC--CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccce
Confidence            4  33545433322221222  3444444331                       23555555 7899999888765543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG0285|consensus

Probab=96.55  E-value=0.018  Score=46.99  Aligned_cols=100  Identities=18%  Similarity=0.283  Sum_probs=75.7

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGL   81 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~   81 (121)
                      +-+..|..|..+-||+...  |..++.+. +..+|.+..+.  +.+|+.|.-|++|..|        |+..-++ +++-.
T Consensus       248 dvl~t~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW--------Dl~agkt~~tlt~  317 (460)
T KOG0285|consen  248 DVLVTGGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW--------DLRAGKTMITLTH  317 (460)
T ss_pred             eeEEecCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe--------eeccCceeEeeec
Confidence            4577889999999999988  66788876 66789998887  8899999999999985        7777666 34444


Q ss_pred             CCCceeEeeeeCCE-EEE-EeCCeEEEEeCCCCcEE
Q psy16019         82 PHHSVRSLAAVYNK-VWC-GYKNKIHVVDPKSLDVI  115 (121)
Q Consensus        82 ~~~pV~~m~~v~~~-lw~-~~gn~I~Vi~~~tl~i~  115 (121)
                      ...+||||....++ +++ |+.+.|.-.+..-++..
T Consensus       318 hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~  353 (460)
T KOG0285|consen  318 HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFL  353 (460)
T ss_pred             ccceeeEEecCCchhhhhccCCccceeccCCccchh
Confidence            46899999999644 344 33377877665555443

>KOG0277|consensus

Probab=96.54  E-value=0.0099  Score=46.57  Aligned_cols=49  Identities=22%  Similarity=0.433  Sum_probs=40.7

Q ss_pred             CCeEEEEECCccc-ceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEE
Q psy16019         14 NGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFR   62 (121)
Q Consensus        14 ~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~   62 (121)
                      +|+|+|.+..+.- -++..++...|.++++...   +++|++|.+||+|-+|.
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD   89 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence            7999999987532 2456788888999999965   67999999999999994

>KOG0276|consensus

Probab=96.51  E-value=0.014  Score=50.45  Aligned_cols=75  Identities=17%  Similarity=0.249  Sum_probs=61.2

Q ss_pred             CCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeeeeCCEEEEEeC---CeEEEE
Q psy16019         36 KDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVV  107 (121)
Q Consensus        36 ~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi  107 (121)
                      .+.|-|+-.+  +.-+.++|=||+|.||        +.+...+   +.+.+  .|||.-..+..+=|.-+|   -+|.|+
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IW--------nyetqtmVksfeV~~--~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIW--------NYETQTMVKSFEVSE--VPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEE--------ecccceeeeeeeecc--cchhhheeeeccceEEEecCCceEEEE
Confidence            3566666665  4579999999999996        6666544   56767  999999999888888777   389999


Q ss_pred             eCCCCcEEEEEEe
Q psy16019        108 DPKSLDVIRPVTI  120 (121)
Q Consensus       108 ~~~tl~i~~~~~~  120 (121)
                      |-+|++..+.||+
T Consensus        83 nynt~ekV~~FeA   95 (794)
T KOG0276|consen   83 NYNTGEKVKTFEA   95 (794)
T ss_pred             ecccceeeEEeec
Confidence            9999999999997

>KOG1407|consensus

Probab=96.49  E-value=0.072  Score=41.94  Aligned_cols=102  Identities=18%  Similarity=0.211  Sum_probs=72.3

Q ss_pred             EEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeCCCCC
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGLPHH   84 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg~~~~   84 (121)
                      .+-+..|+|.|.+-.+  -|.+++++ +|+.-+||++.+  .+.-+|.||..+..        ||+++. +.-.+..-..
T Consensus       163 flt~GlG~v~ILsyps--Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSL--------WD~~ELiC~R~isRldw  232 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPS--LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSL--------WDVDELICERCISRLDW  232 (313)
T ss_pred             EEecCCceEEEEeccc--cccccccccCCcceEEEEECCCCceEeeccccceeec--------cChhHhhhheeeccccC
Confidence            3445569999988776  57788885 678888998874  36667888887777        688886 2223333348


Q ss_pred             ceeEeeeeC-CEE-EEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         85 SVRSLAAVY-NKV-WCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        85 pV~~m~~v~-~~l-w~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      |||.+...- +++ .-|+. ..|=|=+.+|++-.+.++.
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence            999999983 444 33444 4688888899988777653

>KOG1274|consensus

Probab=96.46  E-value=0.045  Score=48.81  Aligned_cols=107  Identities=9%  Similarity=0.076  Sum_probs=76.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGL   81 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~   81 (121)
                      ....++.-.-||.|.+|+..+.. ..=.++. ..+.|.+|.+..++..+|..++++.+|.-.+.     ++..+| .+  
T Consensus        24 ~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~-----~~~~iL~Rf--   95 (933)
T KOG1274|consen   24 DGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG-----EEDTILARF--   95 (933)
T ss_pred             CCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCC-----Cccceeeee--
Confidence            34477777778889998876642 2223343 66899999999999999999999999955432     111222 23  


Q ss_pred             CCCceeEeeeeCC--EEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         82 PHHSVRSLAAVYN--KVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        82 ~~~pV~~m~~v~~--~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                       ..|+|++++.++  .+.+|... -|.+++..+...++.+.
T Consensus        96 -tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr  135 (933)
T KOG1274|consen   96 -TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR  135 (933)
T ss_pred             -eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec
Confidence             259999999964  55555554 79999999998887763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.46  E-value=0.19  Score=38.91  Aligned_cols=106  Identities=13%  Similarity=0.117  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEec-CCeEEEEECCcccc-eeeeeEecCCCEEEEEEe--CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceE
Q psy16019          2 TSVLPTMWLGSQ-NGSVFVHSAVSQWR-RCLHSIQLKDSVLNIVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         2 ~~~~~tvwiGt~-~g~I~v~~~~~~~~-~~l~~~~l~~~V~~i~~~--~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      +.....+++|++ ++.|++|+..+.-+ +...++.+++.+..|...  ++.+|++. .+|.|.+|+.+.+|... .....
T Consensus        43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-~~~~~  121 (330)
T PRK11028         43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-APIQI  121 (330)
T ss_pred             CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-Cceee
Confidence            345667888864 88999999864212 234455566555566655  55799886 47899999876555211 11111


Q ss_pred             EEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCC
Q psy16019         77 VTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKS  111 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~t  111 (121)
                      +. +.  .+..++.+.  ++.+++++.  +.|.|+|.++
T Consensus       122 ~~-~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028        122 IE-GL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             cc-CC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            11 11  122333333  578887664  7999999876

>KOG0303|consensus

Probab=96.45  E-value=0.026  Score=46.48  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=68.1

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEE----------EEe---CCEEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNI----------VHV---QGRVVCALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i----------~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      -+--|+||..|-||...++-.    ...+..+|.++          .++   .|-++.|.+|.++.+|        ++..
T Consensus        96 vIASgSeD~~v~vW~IPe~~l----~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW--------nv~t  163 (472)
T KOG0303|consen   96 VIASGSEDTKVMVWQIPENGL----TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW--------NVGT  163 (472)
T ss_pred             eeecCCCCceEEEEECCCccc----ccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE--------eccC
Confidence            345688999999999887421    11233444444          444   4567788888888886        5544


Q ss_pred             c-eEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         74 Y-HTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        74 ~-~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      - .+|++..| .=|.+|..+  ++.+..+|. .+|.|+|+.+.++...
T Consensus       164 geali~l~hp-d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e  210 (472)
T KOG0303|consen  164 GEALITLDHP-DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE  210 (472)
T ss_pred             CceeeecCCC-CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence            3 35777754 667777777  567777888 5899999999998865

>KOG0305|consensus

Probab=96.44  E-value=0.023  Score=47.86  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=77.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE-e
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT-L   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~-l   79 (121)
                      ....+-+|+.+|.+.||+..+  .+....+..  ..-|-||......+-.|.-||.+.++        |+..+.. .. +
T Consensus       228 ~G~~LavG~~~g~v~iwD~~~--~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~--------dvR~~~~~~~~~  297 (484)
T KOG0305|consen  228 DGSHLAVGTSDGTVQIWDVKE--QKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNH--------DVRISQHVVSTL  297 (484)
T ss_pred             CCCEEEEeecCCeEEEEehhh--ccccccccCCcCceeEEEeccCceEEEecCCCcEEEE--------EEecchhhhhhh
Confidence            456789999999999999888  455666654  58999999999999999999999998        4433322 11 2


Q ss_pred             CCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..-.+-|.-|....+....++|   |.++|.|..+.+.+..|.
T Consensus       298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~  340 (484)
T KOG0305|consen  298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT  340 (484)
T ss_pred             hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe
Confidence            2223667667777655555555   789999997777766653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.42  E-value=0.21  Score=39.07  Aligned_cols=106  Identities=13%  Similarity=0.250  Sum_probs=67.4

Q ss_pred             CCeEEEEec-CC--eEEEEECCcccceeeeeEecCCCEEE--EEEeCCEEEEEe-cCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          5 LPTMWLGSQ-NG--SVFVHSAVSQWRRCLHSIQLKDSVLN--IVHVQGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         5 ~~tvwiGt~-~g--~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~~~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      .+++|-+|. .|  .|..++...  -+.+++.++|+..|.  |...++++|.=. -+|...+|++        +..+.+ 
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~t--g~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~--------~tl~~~~  124 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLET--GKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDP--------NTLKKIG  124 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTT--SSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEET--------TTTEEEE
T ss_pred             CCEEEEeCCCCCcEEEEEEECCC--CcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcc--------ccceEEE
Confidence            467888884 44  677788776  467788899987765  667777777644 4577888844        444332 


Q ss_pred             EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEeC
Q psy16019         78 TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTIR  121 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~~  121 (121)
                      ++.-+.+. --|+..+++||.+.| ++++.+|+++++++++++|.
T Consensus       125 ~~~y~~EG-WGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  125 TFPYPGEG-WGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             EEE-SSS---EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             EEecCCcc-eEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            22111111 235566899999999 89999999999999999873

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0306|consensus

Probab=96.40  E-value=0.054  Score=47.71  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=71.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      ...+-+|=+||.|.||+..+  ...+-++..+ .+|++|+|.  +.++..|..||.|.||.-.       .+--.+++..
T Consensus        77 ~l~lAVGYaDGsVqif~~~s--~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV-------~E~Gl~rL~G  147 (888)
T KOG0306|consen   77 ILLLAVGYADGSVQIFSLES--EEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV-------GEEGLFRLRG  147 (888)
T ss_pred             cceEEEEecCceEEeeccCC--CceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec-------cceeeEEeec
Confidence            34568999999999999887  3455566544 899999997  5689999999999998442       2223455544


Q ss_pred             CCCceeEeeeeC-CEEEEEeC--CeEEEEeCCCCcEE
Q psy16019         82 PHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKSLDVI  115 (121)
Q Consensus        82 ~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~tl~i~  115 (121)
                      ....|+-+...+ +.+-.+++  +.|..-|.+|-...
T Consensus       148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf  184 (888)
T KOG0306|consen  148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF  184 (888)
T ss_pred             chHHHhHHhccCCCeEEEEeccCceEEEEecccceee
Confidence            346676666665 66666666  56777776665443

>KOG1273|consensus

Probab=96.38  E-value=0.022  Score=45.92  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=60.4

Q ss_pred             eeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CCEEEEEeC-
Q psy16019         30 LHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YNKVWCGYK-  101 (121)
Q Consensus        30 l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~~lw~~~g-  101 (121)
                      -+++++|. -.|++++  +..+-+|++||.|.||        |+.....   ++-..  .||.|+.-.  +..|--++. 
T Consensus        18 ~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~--------D~~T~~iar~lsaH~--~pi~sl~WS~dgr~LltsS~D   86 (405)
T KOG1273|consen   18 THTLDNPL-AECCQFSRWGDYLAVGCANGRVVIY--------DFDTFRIARMLSAHV--RPITSLCWSRDGRKLLTSSRD   86 (405)
T ss_pred             ceeccCCc-cceEEeccCcceeeeeccCCcEEEE--------Eccccchhhhhhccc--cceeEEEecCCCCEeeeecCC
Confidence            46777776 5677876  5689999999999998        6555433   33333  899999987  466777777 


Q ss_pred             CeEEEEeCCCCcEEEEEE
Q psy16019        102 NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus       102 n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.|...|...+.+.+++-
T Consensus        87 ~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             ceeEEEeccCCCceeEEE
Confidence            799999999999888763

>KOG0318|consensus

Probab=96.27  E-value=0.096  Score=44.52  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe-CC--------------------------------------
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV-QG--------------------------------------   47 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~-~~--------------------------------------   47 (121)
                      +.-|-.+|.+.||++....+-.+.+++ +..+|.+|... ++                                      
T Consensus        74 iASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~  153 (603)
T KOG0318|consen   74 IASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSV  153 (603)
T ss_pred             EeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeee
Confidence            444557899999998874333345564 45788888864 22                                      


Q ss_pred             --------EEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEE
Q psy16019         48 --------RVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVI  115 (121)
Q Consensus        48 --------~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~  115 (121)
                              |+-.|..|+++++|+        -.++++ .++++-..=|+|.... +++.++..|  .+|+++|-.|++..
T Consensus       154 ~~KpsRPfRi~T~sdDn~v~ffe--------GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v  225 (603)
T KOG0318|consen  154 DFKPSRPFRIATGSDDNTVAFFE--------GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV  225 (603)
T ss_pred             eccCCCceEEEeccCCCeEEEee--------CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence                    334444444555541        112222 2333334568888887 367777666  79999999999999


Q ss_pred             EEEE
Q psy16019        116 RPVT  119 (121)
Q Consensus       116 ~~~~  119 (121)
                      ..|+
T Consensus       226 g~l~  229 (603)
T KOG0318|consen  226 GELE  229 (603)
T ss_pred             EEec
Confidence            8886

>KOG2048|consensus

Probab=96.26  E-value=0.18  Score=43.83  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=78.2

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      ..+.+-+|-.+|.|-||+...+|-. ...+..|  .+|-.|++. ++++|.+..||+|.=|        |+...+-+ ..
T Consensus        36 kS~~lAvsRt~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~Ew--------Dl~~lk~~~~~  106 (691)
T KOG2048|consen   36 KSNQLAVSRTDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEW--------DLHTLKQKYNI  106 (691)
T ss_pred             cCCceeeeccCCcEEEEccCCCcee-eEEEecCCCCceeeEEEccCCeEEeecCCceEEEE--------ecccCceeEEe
Confidence            4456888999999999999987653 2334445  599999998 7899999999999886        76665443 33


Q ss_pred             CCCCCceeEeeee--CCEEEEEeCC-eEEEEeCCCCcEEE
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYKN-KIHVVDPKSLDVIR  116 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~gn-~I~Vi~~~tl~i~~  116 (121)
                      .....+|=+|++.  ++.+.+||-+ -++.|+....+|+.
T Consensus       107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~  146 (691)
T KOG2048|consen  107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY  146 (691)
T ss_pred             cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE
Confidence            3335788888887  5889999985 56677777777764

>KOG1274|consensus

Probab=96.22  E-value=0.082  Score=47.22  Aligned_cols=106  Identities=15%  Similarity=0.046  Sum_probs=76.2

Q ss_pred             CeEEEEecCCeEEEEECCcccce-eeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRR-CLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHH   84 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~-~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~   84 (121)
                      +-+.+|++++.|++|...+.... .+.++.+|..+++.-..++.+-+|..|=.|-+-.-.     |...-+.+.=.+  .
T Consensus        67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-----D~s~~~~lrgh~--a  139 (933)
T KOG1274|consen   67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-----DSSQEKVLRGHD--A  139 (933)
T ss_pred             cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc-----ccchheeecccC--C
Confidence            46788999999999998886555 688889997777766667678777777666665321     222223333333  8


Q ss_pred             ceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         85 SVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        85 pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      ||.++.+.  ++.|..+.. .+|.|+|..++.+.+.+
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence            99999988  356666555 68999999998877654

>KOG0283|consensus

Probab=96.20  E-value=0.042  Score=48.09  Aligned_cols=103  Identities=16%  Similarity=0.224  Sum_probs=76.2

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-----EEe
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-----VTL   79 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-----i~l   79 (121)
                      ..--|+-||++.||+..+  ++...-..+++-|+.++|.  +..++||.=||...+|        ++...++     |.+
T Consensus       424 yFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY--------~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFY--------DTEGLKLVSDFHIRL  493 (712)
T ss_pred             cEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEE--------EccCCeEEEeeeEee
Confidence            345688999999999999  6776666899999999997  4589999999999999        4444433     333


Q ss_pred             CC----CCCceeEeeee---CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         80 GL----PHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~----~~~pV~~m~~v---~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..    ...-|+-+...   .++|-+.+. .+|.|+|.++.++.+.|.
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence            21    12357766666   366777666 799999998777766553

>KOG0282|consensus

Probab=96.20  E-value=0.014  Score=48.70  Aligned_cols=98  Identities=18%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEec-CCcEEEEEcCCCCCCCCCCceEEEe-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTL-   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~l-   79 (121)
                      .++...+|+.|++|.-|+...  .+.++.+.-. .+|++|.+.+ ++=|+..+ |+++.||        +...+-.++. 
T Consensus       311 ~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW--------e~~~~v~ik~i  380 (503)
T KOG0282|consen  311 NQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW--------ENRIPVPIKNI  380 (503)
T ss_pred             CCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE--------EcCCCccchhh
Confidence            478999999999999999998  5778888655 7999999974 45566555 5888887        3444433322 


Q ss_pred             CCC-CCceeEeeeeCCEEEEEeC---CeEEEEeCCC
Q psy16019         80 GLP-HHSVRSLAAVYNKVWCGYK---NKIHVVDPKS  111 (121)
Q Consensus        80 g~~-~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~t  111 (121)
                      .++ ....+||....+.=|.+|+   |.|.++.+..
T Consensus       381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             cchhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence            122 3566688888666666665   8999997643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.16  E-value=0.42  Score=37.78  Aligned_cols=110  Identities=17%  Similarity=0.206  Sum_probs=69.4

Q ss_pred             CCCCeEEEEec-CCeEEEEECCc-c-cceeeeeEe-cCC------CEEEEEEe--CCEEEEEe-cCCcEEEEEcCC-CCC
Q psy16019          3 SVLPTMWLGSQ-NGSVFVHSAVS-Q-WRRCLHSIQ-LKD------SVLNIVHV--QGRVVCAL-ADGSVAIFRRGP-DGQ   68 (121)
Q Consensus         3 ~~~~tvwiGt~-~g~I~v~~~~~-~-~~~~l~~~~-l~~------~V~~i~~~--~~~v~v~L-anG~l~Vy~r~~-~g~   68 (121)
                      .....+++-.| ++.|.+|+... . ..+.++++. +|.      ..-.|...  ..++||+. .+++|++|+.+. +|.
T Consensus       201 pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  201 PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence            34567777775 78899998772 1 123444443 321      35566665  66899987 456799998843 331


Q ss_pred             CCCCCceEEEe-CCCCCceeEeeee--CCEEEEEeC--CeEEEE--eCCCCcEEEE
Q psy16019         69 WDLSKYHTVTL-GLPHHSVRSLAAV--YNKVWCGYK--NKIHVV--DPKSLDVIRP  117 (121)
Q Consensus        69 wd~~~~~~i~l-g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi--~~~tl~i~~~  117 (121)
                        +..-..+.. |.  .| |.|.+.  ++.||++++  +.|.+|  |++|++++..
T Consensus       281 --l~~~~~~~~~G~--~P-r~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  281 --LTLVQTVPTGGK--FP-RHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             --EEEEEEEEESSS--SE-EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             --eEEEEEEeCCCC--Cc-cEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence              222233455 33  45 777774  799999998  677776  6788887754

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0289|consensus

Probab=96.11  E-value=0.083  Score=44.01  Aligned_cols=95  Identities=21%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH   83 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~   83 (121)
                      ..=.|+.||.+-||++.+.  ..+..|. +.++|..|.+.+|  .+-++..||.|-.|....     +.+++++.+.+- 
T Consensus       361 ifgtgt~d~~vkiwdlks~--~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK-----l~n~kt~~l~~~-  432 (506)
T KOG0289|consen  361 IFGTGTPDGVVKIWDLKSQ--TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK-----LKNFKTIQLDEK-  432 (506)
T ss_pred             EEeccCCCceEEEEEcCCc--cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh-----hcccceeecccc-
Confidence            4456889999999999983  4566664 4489999999866  566777888888874432     246677888764 


Q ss_pred             CceeEeeee--CCEEEEEeCCeEEEEeCC
Q psy16019         84 HSVRSLAAV--YNKVWCGYKNKIHVVDPK  110 (121)
Q Consensus        84 ~pV~~m~~v--~~~lw~~~gn~I~Vi~~~  110 (121)
                      ++|.++.+-  +.-|-.+ |+.+.|+-..
T Consensus       433 ~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~  460 (506)
T KOG0289|consen  433 KEVNSLSFDQSGTYLGIA-GSDLQVYICK  460 (506)
T ss_pred             ccceeEEEcCCCCeEEee-cceeEEEEEe
Confidence            588887776  3444444 7765555433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.06  E-value=0.29  Score=43.41  Aligned_cols=113  Identities=13%  Similarity=0.078  Sum_probs=74.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEE-------E--EEE------------------eCCEEEEEecCCc
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVL-------N--IVH------------------VQGRVVCALADGS   57 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~-------~--i~~------------------~~~~v~v~LanG~   57 (121)
                      .++|+++|.++.++-+++.+  =|.+++++....+.       |  ..|                  .+++||++..||.
T Consensus       194 gg~lYv~t~~~~V~ALDa~T--Gk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAAT--GKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCC--CcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            57899999999999999876  36677775542211       1  122                  2459999999999


Q ss_pred             EEEEEcCCCC-CCCCCCceEE----EeCCCC---Ccee-EeeeeCCEEEEEe-----------CCeEEEEeCCCCcEEEE
Q psy16019         58 VAIFRRGPDG-QWDLSKYHTV----TLGLPH---HSVR-SLAAVYNKVWCGY-----------KNKIHVVDPKSLDVIRP  117 (121)
Q Consensus        58 l~Vy~r~~~g-~wd~~~~~~i----~lg~~~---~pV~-~m~~v~~~lw~~~-----------gn~I~Vi~~~tl~i~~~  117 (121)
                      |..++..++. .|++.....+    .+++.+   ..++ .-.+.++.+.+|.           +..|+-+|++|+++.=+
T Consensus       272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9888766543 5876554332    222211   0111 1245578888875           35699999999998866


Q ss_pred             EE
Q psy16019        118 VT  119 (121)
Q Consensus       118 ~~  119 (121)
                      |+
T Consensus       352 ~~  353 (764)
T TIGR03074       352 WD  353 (764)
T ss_pred             Ee
Confidence            64

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.05  E-value=0.22  Score=37.12  Aligned_cols=111  Identities=17%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCeEEEEecC---------CeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEE-ecCCcEEEEEcCCCCCCCCC
Q psy16019          5 LPTMWLGSQN---------GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCA-LADGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         5 ~~tvwiGt~~---------g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~-LanG~l~Vy~r~~~g~wd~~   72 (121)
                      ++.+|+++..         |.|+.++.....+.....+..|   --|.+.  ++.+|++ ...+.|..|+.+.++. .+.
T Consensus        96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~-~~~  171 (246)
T PF08450_consen   96 DGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFP---NGIAFSPDGKTLYVADSFNGRIWRFDLDADGG-ELS  171 (246)
T ss_dssp             TS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSE---EEEEEETTSSEEEEEETTTTEEEEEEEETTTC-CEE
T ss_pred             CCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccc---cceEECCcchheeecccccceeEEEecccccc-cee
Confidence            4568998752         6788888774222223333333   334554  4568865 4567788887765442 223


Q ss_pred             CceE-EEeCCCCCceeEeeee-CCEEEEEe--CCeEEEEeCCCCcEEEEEEe
Q psy16019         73 KYHT-VTLGLPHHSVRSLAAV-YNKVWCGY--KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        73 ~~~~-i~lg~~~~pV~~m~~v-~~~lw~~~--gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++++ +.+.....-..-|++- ++.||+++  +++|.++|++ +++.+.+++
T Consensus       172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred             eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence            3443 3444421113445555 68999994  5899999998 888877654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0264|consensus

Probab=96.02  E-value=0.09  Score=43.46  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=64.2

Q ss_pred             EEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe--CCEEE-EEecCCcEEEEEcCCCCCCCCCCc--eEEEeCCCC
Q psy16019         10 LGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV--QGRVV-CALADGSVAIFRRGPDGQWDLSKY--HTVTLGLPH   83 (121)
Q Consensus        10 iGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~--~~~v~-v~LanG~l~Vy~r~~~g~wd~~~~--~~i~lg~~~   83 (121)
                      --++||.+.|+++.....++.+.. .+++.|.|+.++  ++.++ .|.+||+|++|        |+.+.  ++.++....
T Consensus       245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~Lw--------DlRnL~~~lh~~e~H~  316 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALW--------DLRNLNKPLHTFEGHE  316 (422)
T ss_pred             eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEe--------echhcccCceeccCCC
Confidence            346899999999997423455555 456899999975  34444 45569999998        44443  334555545


Q ss_pred             CceeEeeee--CCEEEEEeC--CeEEEEeCCC
Q psy16019         84 HSVRSLAAV--YNKVWCGYK--NKIHVVDPKS  111 (121)
Q Consensus        84 ~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~t  111 (121)
                      .-|-++.-.  ...+-+++|  +++.|-|...
T Consensus       317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             cceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            677776544  577777777  6888888765

>KOG0273|consensus

Probab=96.00  E-value=0.17  Score=42.53  Aligned_cols=58  Identities=12%  Similarity=0.196  Sum_probs=47.6

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe--CCEEEEEecCCcEEEEEcC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV--QGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~   64 (121)
                      ....+-.|.++|.+.||+...   ....++ ++.+||++++.+  ++++..|..||+..+|.-.
T Consensus       246 ~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~  306 (524)
T KOG0273|consen  246 DGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH  306 (524)
T ss_pred             CCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence            456788999999999999887   334555 566899999998  4679999999999998553

>KOG4640|consensus

Probab=95.92  E-value=0.029  Score=48.40  Aligned_cols=58  Identities=12%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEE-EEEE--eCCEEEEEecCCcEEEEEcCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVL-NIVH--VQGRVVCALADGSVAIFRRGP   65 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~-~i~~--~~~~v~v~LanG~l~Vy~r~~   65 (121)
                      .+.+-++|++|.|.+|-++-   +.+++++.|+ .|+ ++.+  .++.+-||++||+|.+-.-.+
T Consensus        32 ~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   32 MDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            45677899999999999884   7799999884 555 6655  467899999999999984443

>KOG3621|consensus

Probab=95.90  E-value=0.04  Score=47.98  Aligned_cols=107  Identities=20%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CCCCCeEEEEecCCeEEEEECCccccee-eeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRC-LHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~-l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ++....+.+|+..|.+|+|+-.....+. ...-... -.+.++...+..|-+|.++|.|+||..+..+.   .+...++=
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p---~~~~~~t~  118 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP---RDLDYVTP  118 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC---Ccceeecc
Confidence            4566789999999999999977732111 1111111 13445556678899999999999998876432   11222333


Q ss_pred             CCC--CCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019         80 GLP--HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        80 g~~--~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t  111 (121)
                      ++.  ...|+|+.-.  +.++|.|-. ++|......+
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            333  4678888765  689999988 6777665555

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=95.84  E-value=0.028  Score=30.91  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=24.2

Q ss_pred             eeeeeEecCCCE-EEEEEeCCEEEEEecCCcEEEEEc
Q psy16019         28 RCLHSIQLKDSV-LNIVHVQGRVVCALADGSVAIFRR   63 (121)
Q Consensus        28 ~~l~~~~l~~~V-~~i~~~~~~v~v~LanG~l~Vy~r   63 (121)
                      +.+|+.+++.++ ..+...++.||++..||.|..|+.
T Consensus         2 ~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~   38 (40)
T PF13570_consen    2 KVLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDA   38 (40)
T ss_dssp             -EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEET
T ss_pred             ceeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeC
Confidence            356777777654 346788999999999999999954

>KOG0294|consensus

Probab=95.83  E-value=0.093  Score=42.18  Aligned_cols=83  Identities=13%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCC-CceEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLS-KYHTV   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~-~~~~i   77 (121)
                      .++.+.+|-+|+.|.+++..+  ..++..+ .++..|-+|....+    ++..+.+||.|.||.-.    |+.. +|..+
T Consensus       218 ~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~----~~~k~~~~~l  291 (362)
T KOG0294|consen  218 DGSELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID----METKKRPTLL  291 (362)
T ss_pred             CCceEEEecCCceEEEeccCC--CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc----ccccCCccee
Confidence            467899999999999999998  6778877 56799999996665    88889999999999544    3322 23333


Q ss_pred             EeCCCCCceeEeeee
Q psy16019         78 TLGLPHHSVRSLAAV   92 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v   92 (121)
                      ..-+-...++||...
T Consensus       292 ~e~n~~~RltCl~~~  306 (362)
T KOG0294|consen  292 AELNTNVRLTCLRVK  306 (362)
T ss_pred             EEeecCCccceeeeh
Confidence            222223467777654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.83  E-value=0.34  Score=38.52  Aligned_cols=108  Identities=13%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCC---CEEEEEEeCCEEEEEecCCcEEEEEcCCC-CCCCCCCceEEEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD---SVLNIVHVQGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~---~V~~i~~~~~~v~v~LanG~l~Vy~r~~~-g~wd~~~~~~i~lg   80 (121)
                      .+++++|+.+|.+|.++..+  =+.+++...+.   -.-.....++.||++..+|.+..++...+ -.|..+.+..+...
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~--G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~  188 (370)
T COG1520         111 DGKIYVGSWDGKLYALDAST--GTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS  188 (370)
T ss_pred             CCeEEEecccceEEEEECCC--CcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence            46799999999999999854  25567666666   22223455788999998899888876644 34763332112222


Q ss_pred             CCCCceeEeeeeCCEEEEEeCC---eEEEEeCCCCcEEEEE
Q psy16019         81 LPHHSVRSLAAVYNKVWCGYKN---KIHVVDPKSLDVIRPV  118 (121)
Q Consensus        81 ~~~~pV~~m~~v~~~lw~~~gn---~I~Vi~~~tl~i~~~~  118 (121)
                      ....|+    ...+.++.++.+   .++-+|+++++..-+.
T Consensus       189 ~~~~~~----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         189 IYGSPA----IASGTVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cccCce----eecceEEEecCCCcceEEEEEccCCcEeeee
Confidence            222344    556778877764   7999999999887664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.81  E-value=0.081  Score=28.06  Aligned_cols=35  Identities=14%  Similarity=0.411  Sum_probs=28.4

Q ss_pred             eeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEE
Q psy16019         28 RCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFR   62 (121)
Q Consensus        28 ~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~   62 (121)
                      +++++++-+ ++|.+|.+..  +.+.+|..||+|.+|+
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            456777654 8999999985  5899999999999983

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066|consensus

Probab=95.70  E-value=0.19  Score=44.57  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=73.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-------EEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-------RVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-------~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      +.-|-.+++||++.|.+.-+.  +..+++...-++.+|..+++       +.++|.--| |..|+|+=-|.|+.     +
T Consensus        83 Gey~asCS~DGkv~I~sl~~~--~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-----v  154 (846)
T KOG2066|consen   83 GEYVASCSDDGKVVIGSLFTD--DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-----V  154 (846)
T ss_pred             CceEEEecCCCcEEEeeccCC--ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-----e
Confidence            345667778898888887663  33333333334555555433       566666667 99999986565552     2


Q ss_pred             EeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019         78 TLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~  118 (121)
                      .+.+-..||+|+.-.++-+.-++--.|.|+|..+.+....+
T Consensus       155 ~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  155 VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNI  195 (846)
T ss_pred             eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeecc
Confidence            33333489999999999998888999999999998876544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.67  E-value=0.042  Score=29.85  Aligned_cols=28  Identities=21%  Similarity=0.395  Sum_probs=24.8

Q ss_pred             CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         93 YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        93 ~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++.||+++.  +.|.+||+.++++.+++++
T Consensus         3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            578999996  8999999999999998875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0271|consensus

Probab=95.67  E-value=0.041  Score=45.30  Aligned_cols=57  Identities=18%  Similarity=0.266  Sum_probs=48.4

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV-QGRVVCALADGSVAIFRRGP   65 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~   65 (121)
                      .+--++.||.+.||+...  ++|+..+ -++.+|+|++.- ++.+|.|..|++|-||+...
T Consensus       219 ~las~skDg~vrIWd~~~--~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d  277 (480)
T KOG0271|consen  219 RLASSSKDGSVRIWDTKL--GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD  277 (480)
T ss_pred             ceecccCCCCEEEEEccC--ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc
Confidence            344566799999999998  6787777 467999999998 88999999999999997765

>KOG2110|consensus

Probab=95.61  E-value=0.32  Score=39.75  Aligned_cols=94  Identities=16%  Similarity=0.274  Sum_probs=65.3

Q ss_pred             eEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCC-CCCc--eeEeee
Q psy16019         16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGL-PHHS--VRSLAA   91 (121)
Q Consensus        16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~-~~~p--V~~m~~   91 (121)
                      ++.+++...  +..+=.+.-|.+|++++.+++++.|.|..- +.||        |+++.+++ ++.+ |+.|  +..+.+
T Consensus        69 ~Lkv~~~Kk--~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIy--------dI~~MklLhTI~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   69 KLKVVHFKK--KTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIY--------DIKDMKLLHTIETTPPNPKGLCALSP  137 (391)
T ss_pred             eEEEEEccc--CceEEEEecCCceEEEEEccceEEEEEccc-EEEE--------ecccceeehhhhccCCCccceEeecc
Confidence            355555554  223445567889999999999999999985 9999        77787775 3433 2334  445555


Q ss_pred             eCC--EEEE-EeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         92 VYN--KVWC-GYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        92 v~~--~lw~-~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +++  .|.+ ++.  ..|+++|+.+++....+++
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a  171 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA  171 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcccceeeeEEEe
Confidence            543  3433 444  5799999999999888875

>KOG0772|consensus

Probab=95.59  E-value=0.047  Score=46.37  Aligned_cols=60  Identities=13%  Similarity=0.300  Sum_probs=45.9

Q ss_pred             CCCCCeEEEEec------CCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEc
Q psy16019          2 TSVLPTMWLGSQ------NGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRR   63 (121)
Q Consensus         2 ~~~~~tvwiGt~------~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r   63 (121)
                      +..+..+..||.      .|.|++|+...  -+.+..+..+ ++|..+.++.  |++|||++||+.-||=.
T Consensus       418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t--~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  418 SPDDKLILTGTSAPNGMTAGTLFFFDRMT--LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             CCCceEEEecccccCCCCCceEEEEeccc--eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence            344556666664      67899999776  4667888777 6887877774  79999999999999943

>KOG2096|consensus

Probab=95.59  E-value=0.035  Score=44.83  Aligned_cols=82  Identities=16%  Similarity=0.187  Sum_probs=61.1

Q ss_pred             CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC-C-----CCcee-EeeeeCCEEEEEeCCeEEEE
Q psy16019         37 DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-P-----HHSVR-SLAAVYNKVWCGYKNKIHVV  107 (121)
Q Consensus        37 ~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~-~-----~~pV~-~m~~v~~~lw~~~gn~I~Vi  107 (121)
                      ++|+...++++  ++....-||+.-||.-+-.=. --++|++++.|. |     ..|+| .|.+.++.|.++.|..+.++
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~-~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~  357 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE-AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF  357 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceEe-cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence            68988888754  788899999999986542111 114677776663 2     47886 46777899999999999999


Q ss_pred             eCCCCcEEEEEE
Q psy16019        108 DPKSLDVIRPVT  119 (121)
Q Consensus       108 ~~~tl~i~~~~~  119 (121)
                      ++++++.+-.||
T Consensus       358 ~se~g~~~~~~e  369 (420)
T KOG2096|consen  358 ASEDGKDYPELE  369 (420)
T ss_pred             EcccCccchhHH
Confidence            999988765543

>KOG2114|consensus

Probab=95.56  E-value=0.11  Score=46.24  Aligned_cols=100  Identities=16%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCC-EEEEEEeCC--EEE-EEecCC----cEEEEEcCCCCCCCCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDS-VLNIVHVQG--RVV-CALADG----SVAIFRRGPDGQWDLS   72 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~-V~~i~~~~~--~v~-v~LanG----~l~Vy~r~~~g~wd~~   72 (121)
                      +|....|.+||.+|+|.+++..-   +.++.++. +.+ |+.|...++  .+| +|...+    .|-||......  ..+
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~--~n~  106 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD--KNN  106 (933)
T ss_pred             cCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC--CCC
Confidence            56778999999999999998654   44466643 334 555544443  333 444444    57888765432  123


Q ss_pred             CceEE------EeCCC--CCceeEeeeeC--CEEEEEeCCeEEE
Q psy16019         73 KYHTV------TLGLP--HHSVRSLAAVY--NKVWCGYKNKIHV  106 (121)
Q Consensus        73 ~~~~i------~lg~~--~~pV~~m~~v~--~~lw~~~gn~I~V  106 (121)
                      +|..+      ++-.|  +.|+.++++.+  +.+.||.+|.-.+
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~  150 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVI  150 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEE
Confidence            35443      22234  68999999886  7888898875433

>KOG0265|consensus

Probab=95.41  E-value=0.18  Score=40.30  Aligned_cols=97  Identities=15%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~   81 (121)
                      +..|.-|+.||.+-+|+...  |.+.+++.-+-.++...+  ..++++.|+-|+.|-||        |+.....+ .+.-
T Consensus       145 ~~lv~SgsdD~t~kl~D~R~--k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvW--------d~r~~d~~~~lsG  214 (338)
T KOG0265|consen  145 PQLVCSGSDDGTLKLWDIRK--KEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVW--------DLRKNDGLYTLSG  214 (338)
T ss_pred             CeEEEecCCCceEEEEeecc--cchhhccccceeEEEEEecccccceeeccccCceeee--------ccccCcceEEeec
Confidence            34678899999999999998  667777744444555554  46799999999999996        55332221 1211


Q ss_pred             CCCceeEeeeeC-CEEEEEeC--CeEEEEeCCC
Q psy16019         82 PHHSVRSLAAVY-NKVWCGYK--NKIHVVDPKS  111 (121)
Q Consensus        82 ~~~pV~~m~~v~-~~lw~~~g--n~I~Vi~~~t  111 (121)
                      ...||+.|.... +.--.+.+  |.+.+.|..-
T Consensus       215 h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  215 HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             ccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            236777777662 22222332  5555555443

>KOG0276|consensus

Probab=95.39  E-value=0.099  Score=45.41  Aligned_cols=79  Identities=22%  Similarity=0.392  Sum_probs=60.8

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      +..|.+--|+|||.+-||++..  .+..+++... +.|-||.+.+  ++|-+|-.+|.+.                 +++
T Consensus       237 p~lpiiisgsEDGTvriWhs~T--y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-----------------v~l  297 (794)
T KOG0276|consen  237 PELPIIISGSEDGTVRIWNSKT--YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-----------------VKL  297 (794)
T ss_pred             CCCcEEEEecCCccEEEecCcc--eehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-----------------EEc
Confidence            3457888999999999999887  5666777777 7899999764  4556665555543                 567


Q ss_pred             CCCCCceeEeeeeCCEEEEEeC
Q psy16019         80 GLPHHSVRSLAAVYNKVWCGYK  101 (121)
Q Consensus        80 g~~~~pV~~m~~v~~~lw~~~g  101 (121)
                      |. ..|.-+|..+++-+|+..+
T Consensus       298 gr-eeP~vsMd~~gKIiwa~~~  318 (794)
T KOG0276|consen  298 GR-EEPAVSMDSNGKIIWAVHS  318 (794)
T ss_pred             cC-CCCceeecCCccEEEEcCc
Confidence            76 3899999999999998765

>KOG1408|consensus

Probab=95.38  E-value=0.13  Score=45.51  Aligned_cols=106  Identities=18%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC----CEEEEEecCCcEEEEEcC---CCCCCCCCCceEEEe
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ----GRVVCALADGSVAIFRRG---PDGQWDLSKYHTVTL   79 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~---~~g~wd~~~~~~i~l   79 (121)
                      +--|+.|.-||||+...+ ...++++. +.++|+++++..    -+.....||-.+. |+-+   .+|  .+-..++-++
T Consensus       519 LASasrdRlIHV~Dv~rn-y~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g--~~f~r~t~t~  594 (1080)
T KOG1408|consen  519 LASASRDRLIHVYDVKRN-YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSG--RLFPRHTQTL  594 (1080)
T ss_pred             hhhccCCceEEEEecccc-cchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCc--eecccccccc
Confidence            334678899999998874 23567774 568999999863    3677788886543 4332   233  1112222344


Q ss_pred             CCCCCceeEeeeeC--CEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAVY--NKVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v~--~~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                      +.  ..+--|.+-.  +.+..+|++ +|.|||.++++..++|.
T Consensus       595 ~k--tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK  635 (1080)
T KOG1408|consen  595 SK--TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK  635 (1080)
T ss_pred             cc--ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec
Confidence            44  5566666553  677889994 79999999999999985

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.31  E-value=0.54  Score=39.82  Aligned_cols=113  Identities=17%  Similarity=0.258  Sum_probs=68.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCC-----CEE-EEEEeCCEEEEEec------CCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-----SVL-NIVHVQGRVVCALA------DGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-----~V~-~i~~~~~~v~v~La------nG~l~Vy~r~~~g-~wd~   71 (121)
                      .+.+++|+.+|.|+.+++.+-  +.+++..+.+     .++ .-...++.||++.+      +|.|..|+...+. .|..
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TG--k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTG--KVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCC--CEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            468999999999999998763  5555554321     121 12345789999976      6889999876543 3543


Q ss_pred             CCc--e-E-E-----E-eCCC-------------CCcee---EeeeeCCEEEEEeCC-----------------eEEEEe
Q psy16019         72 SKY--H-T-V-----T-LGLP-------------HHSVR---SLAAVYNKVWCGYKN-----------------KIHVVD  108 (121)
Q Consensus        72 ~~~--~-~-i-----~-lg~~-------------~~pV~---~m~~v~~~lw~~~gn-----------------~I~Vi~  108 (121)
                      ..-  . . .     . .+.+             ..++=   ++-...+.||.+.||                 .|+-+|
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld  277 (527)
T TIGR03075       198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD  277 (527)
T ss_pred             cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence            221  0 0 0     0 0000             00111   222224667777755                 899999


Q ss_pred             CCCCcEEEEEE
Q psy16019        109 PKSLDVIRPVT  119 (121)
Q Consensus       109 ~~tl~i~~~~~  119 (121)
                      ++|++++=.|+
T Consensus       278 ~~TG~~~W~~Q  288 (527)
T TIGR03075       278 PDTGKIKWHYQ  288 (527)
T ss_pred             cccCCEEEeee
Confidence            99999987765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0271|consensus

Probab=95.27  E-value=0.17  Score=41.81  Aligned_cols=107  Identities=19%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC-------CEEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ-------GRVVCALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~-------~~v~v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      +....+--|+-||.|.+|+.... .+.-..++ +..-|++|.+..       .++-.+.-||++.||        |+..-
T Consensus       167 PDgk~iASG~~dg~I~lwdpktg-~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW--------d~~~~  237 (480)
T KOG0271|consen  167 PDGKKIASGSKDGSIRLWDPKTG-QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW--------DTKLG  237 (480)
T ss_pred             CCcchhhccccCCeEEEecCCCC-CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE--------EccCc
Confidence            34455667889999999996653 22334443 446888988762       245555668999996        66554


Q ss_pred             -eEEEeCCCCCceeEeeeeC-CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         75 -HTVTLGLPHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        75 -~~i~lg~~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                       .++.+.--..||+|+.-=+ +-+|-|+. ..|.|.++..+...+.|
T Consensus       238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~l  284 (480)
T KOG0271|consen  238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCREL  284 (480)
T ss_pred             eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhh
Confidence             3345544458999998874 66777888 57999999987765544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.19  E-value=1.2  Score=35.26  Aligned_cols=106  Identities=15%  Similarity=0.201  Sum_probs=66.8

Q ss_pred             eEEEEecC----CeEEEEECCcccce--eeeeEecCCCEEEEEE--eCCEEEEEec----CCcEEEEEcCCC-CCCCCCC
Q psy16019          7 TMWLGSQN----GSVFVHSAVSQWRR--CLHSIQLKDSVLNIVH--VQGRVVCALA----DGSVAIFRRGPD-GQWDLSK   73 (121)
Q Consensus         7 tvwiGt~~----g~I~v~~~~~~~~~--~l~~~~l~~~V~~i~~--~~~~v~v~La----nG~l~Vy~r~~~-g~wd~~~   73 (121)
                      |+++|+..    +.|++|+..+...+  .++.+........|..  ..+.+|++..    +|.|..|+...+ |..  ..
T Consensus         1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L--~~   78 (345)
T PF10282_consen    1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL--TL   78 (345)
T ss_dssp             EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE--EE
T ss_pred             CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee--EE
Confidence            68999987    89999998442222  2333333344445555  6789999988    579999987654 321  11


Q ss_pred             ceEEE-eCCCCCceeEeee--eCCEEEEEeC--CeEEEEeCCC-CcEEEE
Q psy16019         74 YHTVT-LGLPHHSVRSLAA--VYNKVWCGYK--NKIHVVDPKS-LDVIRP  117 (121)
Q Consensus        74 ~~~i~-lg~~~~pV~~m~~--v~~~lw~~~g--n~I~Vi~~~t-l~i~~~  117 (121)
                      -..+. .|.  .|.. +.+  .++.|++++-  +.|.+++... +.+...
T Consensus        79 ~~~~~~~g~--~p~~-i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~  125 (345)
T PF10282_consen   79 LNSVPSGGS--SPCH-IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV  125 (345)
T ss_dssp             EEEEEESSS--CEEE-EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE
T ss_pred             eeeeccCCC--CcEE-EEEecCCCEEEEEEccCCeEEEEEccCCccccee
Confidence            11122 444  5542 333  3688999863  7899988876 565554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1645|consensus

Probab=95.14  E-value=0.11  Score=43.00  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=45.1

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEE
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFR   62 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~   62 (121)
                      .+-.++-+..|-|+++..  +-+..+...+.++-+..+.   .+.+|+|++||.|.||+
T Consensus       208 Ll~~asl~nkiki~dlet--~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  208 LLGLASLGNKIKIMDLET--SCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             eeeeeccCceEEEEeccc--ceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence            567788888999999888  4567788888888888875   56899999999999993

>KOG0293|consensus

Probab=95.07  E-value=0.27  Score=41.01  Aligned_cols=106  Identities=15%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      |+....+|.+=+.|..|.+|+...  +.+..-+....+|+++.-.+  ..+.|-|++-.+-.        ||+++++.+ 
T Consensus       362 it~Dgk~vl~v~~d~~i~l~~~e~--~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~L--------WDl~e~~lv~  431 (519)
T KOG0293|consen  362 ITYDGKYVLLVTVDKKIRLYNREA--RVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHL--------WDLEENKLVR  431 (519)
T ss_pred             EcCCCcEEEEEecccceeeechhh--hhhhccccccCceeEEEEcCCCcEEEEEcccCeeEE--------eecchhhHHH
Confidence            567778888889999999999887  55555666777888877764  46888888888777        588887663 


Q ss_pred             -----EeCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEE
Q psy16019         78 -----TLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        78 -----~lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~  118 (121)
                           +.|.  .-||+.---.+.-.+++|   .+|+|-+-.++++...+
T Consensus       432 kY~Ghkq~~--fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L  478 (519)
T KOG0293|consen  432 KYFGHKQGH--FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL  478 (519)
T ss_pred             Hhhcccccc--eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence                 3444  667764444443444444   69999999999887654

>KOG1446|consensus

Probab=95.00  E-value=0.71  Score=36.84  Aligned_cols=85  Identities=9%  Similarity=0.057  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC--C---CEEE-EEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc-
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--D---SVLN-IVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY-   74 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~---~V~~-i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-   74 (121)
                      +..+..|.+.|+.+.+++.++-+..  .+.++..+  +   ++-+ ..-....|+.|..||+|.||+-        +.. 
T Consensus       196 S~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~--------~tg~  265 (311)
T KOG1446|consen  196 SPDGKSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL--------ETGK  265 (311)
T ss_pred             cCCCCEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc--------CCCc
Confidence            4567899999999999999988753  34444332  1   2222 2234668899999999999854        333 


Q ss_pred             eEEEeCCC-CCceeEeeeeCCEE
Q psy16019         75 HTVTLGLP-HHSVRSLAAVYNKV   96 (121)
Q Consensus        75 ~~i~lg~~-~~pV~~m~~v~~~l   96 (121)
                      ++..+-.| ..|++|+..+....
T Consensus       266 ~v~~~~~~~~~~~~~~~fnP~~~  288 (311)
T KOG1446|consen  266 KVAVLRGPNGGPVSCVRFNPRYA  288 (311)
T ss_pred             EeeEecCCCCCCccccccCCcee
Confidence            23333333 57888888776443

>KOG0301|consensus

Probab=94.96  E-value=0.17  Score=44.21  Aligned_cols=58  Identities=17%  Similarity=0.274  Sum_probs=46.5

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEEEEEEe-CCEEEEEecCCcEEEEEcCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVHV-QGRVVCALADGSVAIFRRGP   65 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~~-~~~v~v~LanG~l~Vy~r~~   65 (121)
                      .+.-+---.||+.+-||+-.    .|.+.|.+|. +|=|-+.. .+.++||.+||.|-||.-..
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            34445555688999999855    6899999996 77777776 66899999999999998774

>KOG4649|consensus

Probab=94.88  E-value=0.64  Score=36.95  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=71.2

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE---EEEeCCEEEEEecCCcEEEEEcCCC---CCCCCC--
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN---IVHVQGRVVCALADGSVAIFRRGPD---GQWDLS--   72 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~---i~~~~~~v~v~LanG~l~Vy~r~~~---g~wd~~--   72 (121)
                      |+.....+|.|++||..|..+...  +.|+...+.+..++.   |.--+..+|+|...|.|..-..+..   .-|-..  
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~--~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~  178 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKT--YGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF  178 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccc--cceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcC
Confidence            466778999999999999999887  679998899876653   5555778999999998776655432   124221  


Q ss_pred             -----CceE----EEeCCCCCceeEeeeeCCEEEE-EeCCeEEEEeCCC
Q psy16019         73 -----KYHT----VTLGLPHHSVRSLAAVYNKVWC-GYKNKIHVVDPKS  111 (121)
Q Consensus        73 -----~~~~----i~lg~~~~pV~~m~~v~~~lw~-~~gn~I~Vi~~~t  111 (121)
                           +|..    +.++....-+.||...+.++|- +.+.-|+.=-+++
T Consensus       179 ~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s  227 (354)
T KOG4649|consen  179 GPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCES  227 (354)
T ss_pred             CccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCCceecccccC
Confidence                 1111    2222223456677777788883 3334455544444

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.33  Score=37.33  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=77.3

Q ss_pred             CCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019          5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH   83 (121)
Q Consensus         5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~   83 (121)
                      .+.+|.=| ++|.-++|+..+  -+++.++.-+..=--|.+.+..+.  .+||+=.++-|++.   ++.....+.+-+..
T Consensus       100 gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~GeGWgLt~d~~~Li--msdGsatL~frdP~---tfa~~~~v~VT~~g  172 (262)
T COG3823         100 GDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGEGWGLTSDDKNLI--MSDGSATLQFRDPK---TFAELDTVQVTDDG  172 (262)
T ss_pred             cceEEEEEeccceeEEEChHH--hhhhcccccCCcceeeecCCcceE--eeCCceEEEecCHH---HhhhcceEEEEECC
Confidence            45677777 688888998887  577888877765556667666644  56676555545432   45555666665545


Q ss_pred             CceeEe---eeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSL---AAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m---~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .||+.+   .-+.++|++---  ++|..|+++|+++...+++
T Consensus       173 ~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl  214 (262)
T COG3823         173 VPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL  214 (262)
T ss_pred             eecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence            788774   455688888554  8999999999999998875

>KOG0308|consensus

Probab=94.87  E-value=0.04  Score=47.72  Aligned_cols=101  Identities=19%  Similarity=0.247  Sum_probs=74.8

Q ss_pred             eEEEEecCCeEEEEECCcccce----eeeeEecC-CCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRR----CLHSIQLK-DSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~----~l~~~~l~-~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .++.|..||.|.+|+..+...+    +..+++.+ |=|-+|..  ..+.+..+..|-+|-+|.-..++.|.     +=++
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c-----~sti  113 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC-----MSTI  113 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh-----Hhhh
Confidence            5899999999999997764332    46777554 66666544  34468888889999999777665444     3345


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCC
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSL  112 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl  112 (121)
                      ++-..=|.|+++.  ++++.++-|  .+|++-|.+++
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~  150 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTG  150 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCc
Confidence            5555789999985  588888777  78999999987

>KOG0640|consensus

Probab=94.83  E-value=0.11  Score=41.89  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccce----------------eeeeE-ecCCCEEEEEEeC--CEEEEEecCCcEEEEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRR----------------CLHSI-QLKDSVLNIVHVQ--GRVVCALADGSVAIFR   62 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~----------------~l~~~-~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~   62 (121)
                      ++.+..+-.|+-|-+|-|++.+...-|                .+.++ .+-|.|.++.++.  ..+..|.-|++|-.| 
T Consensus       121 s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlF-  199 (430)
T KOG0640|consen  121 SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLF-  199 (430)
T ss_pred             CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEE-
Confidence            455667778888999999997732111                12333 4557888888874  345556667999999 


Q ss_pred             cCCCCCCCCCCceE---E-EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         63 RGPDGQWDLSKYHT---V-TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        63 r~~~g~wd~~~~~~---i-~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                             |+..+..   . .+.+ .+|||||...  ++.|.+|.. +.+.++|.+|.+--
T Consensus       200 -------DfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf  251 (430)
T KOG0640|consen  200 -------DFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF  251 (430)
T ss_pred             -------ecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence                   6665532   2 2333 3899999988  578888988 78999999988753

>KOG0305|consensus

Probab=94.78  E-value=0.64  Score=39.32  Aligned_cols=101  Identities=22%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      ++-+-+|.. ..+|+|+..+..-..+..+. .+.|+++.+.  ++.+-||..+|.|-+|++.     .....+.+..+. 
T Consensus       188 ~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-----~~k~~~~~~~~h-  259 (484)
T KOG0305|consen  188 ANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-----EQKKTRTLRGSH-  259 (484)
T ss_pred             CCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehh-----hccccccccCCc-
Confidence            344455543 58999998874222333333 6899999997  6789999999999998432     222233344422 


Q ss_pred             CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCc
Q psy16019         83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      ..-|-||+-.+..+-+|.+ ..|...|....+
T Consensus       260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             CceeEEEeccCceEEEecCCCcEEEEEEecch
Confidence            2677788888888888999 478888776543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=94.64  E-value=0.41  Score=40.94  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=44.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEEEEecCCcEEEEEcC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCALADGSVAIFRRG   64 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~   64 (121)
                      +..+..+.+|.+||.|.+|+.....   -+..+.+=.++.+.++.+  .+.||...|.|-+|+..
T Consensus       268 sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  268 SPSEDKLVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CcccceEEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            3456789999999999999987632   223344444566676644  78888888999999875

>KOG0319|consensus

Probab=94.63  E-value=0.27  Score=43.24  Aligned_cols=108  Identities=13%  Similarity=0.173  Sum_probs=73.8

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-------EEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-------RVVCALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-------~v~v~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      |.....++.-+..|.-++||+..+  .++++.+++-..+-...+.++       ..|.+..+|.+-++...        +
T Consensus       200 ~~~d~~~~ls~~RDkvi~vwd~~~--~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e--------s  269 (775)
T KOG0319|consen  200 FSEDSLELLSVGRDKVIIVWDLVQ--YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE--------S  269 (775)
T ss_pred             eccCCceEEEeccCcEEEEeehhh--hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc--------c
Confidence            345567888899999999999976  466777777676666666554       89999999999998433        3


Q ss_pred             ceEE---EeCCCCCceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         74 YHTV---TLGLPHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        74 ~~~i---~lg~~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      -+.+   +-.+.++-.++|... .+.+.+-.. -+++++|.+++++.++|
T Consensus       270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i  319 (775)
T KOG0319|consen  270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI  319 (775)
T ss_pred             chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence            2221   111112333344433 366666555 68999999999998865

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.59  E-value=1.4  Score=33.05  Aligned_cols=58  Identities=10%  Similarity=0.175  Sum_probs=43.7

Q ss_pred             CCeEEEEecCCeEEEEECCcc--cc-eeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQ--WR-RCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~--~~-~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~   64 (121)
                      ...+.++... +|+||....+  .. +..+.+.+|+.+.+|.+.++.+++|..++ ..+++-.
T Consensus       105 ~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~~idl~  165 (275)
T PF00780_consen  105 SRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FYLIDLN  165 (275)
T ss_pred             ceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eEEEecC
Confidence            3456666665 8999887664  22 56788999999999999999999999877 4444433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2111|consensus

Probab=94.56  E-value=0.45  Score=38.28  Aligned_cols=108  Identities=10%  Similarity=0.177  Sum_probs=74.3

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEeCC-EEEEEecC------CcEEEEEcCCCCCCCCCCc
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG-RVVCALAD------GSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~-~v~v~Lan------G~l~Vy~r~~~g~wd~~~~   74 (121)
                      +++..-+|+++| .-||+++- .|+.-.+=..+  -.+..+++..| ..+||..+      ..|.||+       |....
T Consensus        16 D~ScFava~~~G-friyn~~P-~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-------D~k~~   86 (346)
T KOG2111|consen   16 DHSCFAVATDTG-FRIYNCDP-FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-------DLKER   86 (346)
T ss_pred             CCceEEEEecCc-eEEEecCc-hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-------cccCc
Confidence            456788999987 35788664 34322221222  25556667665 45677555      3477763       44555


Q ss_pred             eEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCC-CCcEEEEEEeC
Q psy16019         75 HTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPK-SLDVIRPVTIR  121 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~-tl~i~~~~~~~  121 (121)
                      .++.+.. ..||+.+-+..+++-+...|+|+|+.-. +++..+.|+-+
T Consensus        87 ~i~el~f-~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~  133 (346)
T KOG2111|consen   87 CIIELSF-NSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETR  133 (346)
T ss_pred             EEEEEEe-ccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecc
Confidence            6666654 3799999999999999999999999877 78888888743

>KOG0284|consensus

Probab=94.50  E-value=0.078  Score=43.84  Aligned_cols=107  Identities=13%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccce-eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRR-CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~-~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ....-+..|+++|..-+|+....--+ +++  .+.++|.++++.  +..+..|-.+|.|-+|+.+      .++-+.+.-
T Consensus       106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQ--aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn------mnnVk~~~a  177 (464)
T KOG0284|consen  106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQ--AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN------MNNVKIIQA  177 (464)
T ss_pred             CCCceeEeecccccEEEecCceeeHHHHhh--hhcccceeEEEccCCCEEEEcCCCceEEecccc------hhhhHHhhH
Confidence            34567889999999999998653112 232  344789999976  4567777777888776432      122222222


Q ss_pred             CCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         80 GLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      .. .+.||+|+.. ++..+++|.  +.|.|-|..-.+-|+.+
T Consensus       178 hh-~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL  218 (464)
T KOG0284|consen  178 HH-AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL  218 (464)
T ss_pred             hh-hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence            11 2799999998 577788777  78999998777766654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.44  E-value=2  Score=34.19  Aligned_cols=106  Identities=12%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCC---CEE-EEEEeCCEEEEEecCCcEEEEEcC-CCCCCCCCCceEEEe
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD---SVL-NIVHVQGRVVCALADGSVAIFRRG-PDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~---~V~-~i~~~~~~v~v~LanG~l~Vy~r~-~~g~wd~~~~~~i~l   79 (121)
                      .+++++++.+|.|+-++....  +.+++.++..   .+. -+.+.++++|++..||.+..|.-. ..-.|..+..-..  
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g--~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~--  143 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTG--LVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSP--  143 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCC--cEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCe--
Confidence            468999999999999998774  3345444331   111 135568899999999977777543 2223533222201  


Q ss_pred             CCCCCceeEeeeeCCEEEEEe-CCeEEEEeCCCCcEEEEE
Q psy16019         80 GLPHHSVRSLAAVYNKVWCGY-KNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~~~pV~~m~~v~~~lw~~~-gn~I~Vi~~~tl~i~~~~  118 (121)
                          .=.......+..+|.++ .+.++.+|++|++..=.+
T Consensus       144 ----~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         144 ----YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             ----EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence                11112344568889886 589999999999885443

>KOG4378|consensus

Probab=94.40  E-value=0.45  Score=40.58  Aligned_cols=101  Identities=13%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceE----EE
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHT----VT   78 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~----i~   78 (121)
                      +--++..|.|.|+++..  ++.-..|.++  ++|-=+.|+..   .+-.+.-||.|.+|        |+....-    ..
T Consensus       136 iAsvs~gGdiiih~~~t--~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw--------Dv~g~sp~~~~~~  205 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKT--KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW--------DVQGMSPIFHASE  205 (673)
T ss_pred             eEEeccCCcEEEEeccc--CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE--------eccCCCcccchhh
Confidence            34566789999999988  5566778888  35546667632   45667788999997        5544322    33


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      ....+..=-|+.+++..|.+.-|  .+|+++|..+-+....+
T Consensus       206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l  247 (673)
T KOG4378|consen  206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL  247 (673)
T ss_pred             hccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence            43433444488888888888666  89999999876655544

>KOG0270|consensus

Probab=94.29  E-value=0.41  Score=39.90  Aligned_cols=99  Identities=13%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-----
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-----   76 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-----   76 (121)
                      ....+||+||.++=|+.+.+ -+++++++.+ ++|.+|.++   .+.+-.+.+|+.|-++.-.      .++|+.     
T Consensus       343 ~~f~~~tddG~v~~~D~R~~-~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~------~~~~~~v~~~~  415 (463)
T KOG0270|consen  343 NSFFVSTDDGTVYYFDIRNP-GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD------VDSPKSVKEHS  415 (463)
T ss_pred             eeEEEecCCceEEeeecCCC-CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec------CCCCccccccc
Confidence            46678999999999999885 3789999876 799999987   5678889999999998543      234433     


Q ss_pred             EEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         77 VTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      +++|.    ..|++...   ..+.+|-. +.+.|+|..+..-.
T Consensus       416 ~~~~r----l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  416 FKLGR----LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccc----eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            44444    55666663   33333322 45899998876543

>KOG0289|consensus

Probab=94.29  E-value=1.4  Score=37.03  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=67.9

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC-EEE-EEecCCcEEEEEcCCCCCCCCCCceEE-EeCCCC
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG-RVV-CALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPH   83 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~-~v~-v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~   83 (121)
                      +.-.++||..-.++..+...-+..+-.-. -.++++.++.+ .+| .|+.||.|-||        |+.++.-+ +++.-.
T Consensus       318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw--------dlks~~~~a~Fpght  389 (506)
T KOG0289|consen  318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW--------DLKSQTNVAKFPGHT  389 (506)
T ss_pred             EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE--------EcCCccccccCCCCC
Confidence            44456667666666555211122222211 25888888754 444 36788999997        77776542 444345


Q ss_pred             CceeEeeeeCCEEEEEeC--C-eEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSLAAVYNKVWCGYK--N-KIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m~~v~~~lw~~~g--n-~I~Vi~~~tl~i~~~~~~  120 (121)
                      .||+.+...+|--|.+.+  . .|++.|.+-++--++|..
T Consensus       390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l  429 (506)
T KOG0289|consen  390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL  429 (506)
T ss_pred             CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence            899999999887776544  4 499999998887776653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.29  E-value=0.51  Score=39.54  Aligned_cols=93  Identities=15%  Similarity=0.198  Sum_probs=58.7

Q ss_pred             CeEEEEECCcccceeeeeEecC---CCEEEEEEe----CCEEEEEecC-CcEEEEEcCCCCCCCCCCceEEEeCCC----
Q psy16019         15 GSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV----QGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTVTLGLP----   82 (121)
Q Consensus        15 g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~----~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~i~lg~~----   82 (121)
                      .+|++|+...  ++.++++.|+   ..++.|++.    .+.-|||.|= ++|-.|.+..+|.|.  .-++|.+...    
T Consensus       222 ~~l~vWD~~~--r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~--a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  222 HSLHVWDWST--RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA--AEKVIDIPAKKVEG  297 (461)
T ss_dssp             -EEEEEETTT--TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE--EEEEEEE--EE--S
T ss_pred             CeEEEEECCC--CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee--eeEEEECCCcccCc
Confidence            4799999998  7899999998   378899875    3467777664 457777777788886  4456666541    


Q ss_pred             -CC-----------c-eeEeeee--CCEEEEEeC--CeEEEEeCCC
Q psy16019         83 -HH-----------S-VRSLAAV--YNKVWCGYK--NKIHVVDPKS  111 (121)
Q Consensus        83 -~~-----------p-V~~m~~v--~~~lw~~~g--n~I~Vi~~~t  111 (121)
                       ..           | |+-|.+.  .+.||++|-  +.|.-+|...
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence             01           1 3445555  588999998  6798888765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0286|consensus

Probab=94.23  E-value=2.4  Score=34.07  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .....+.-++|||++.||++-.  ....+.++|| .=|..-.|.+  +.|-.|.-|..-.||+-..... +-.-+..-.+
T Consensus        65 ~Dsr~ivSaSqDGklIvWDs~T--tnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~-~g~~~v~r~l  141 (343)
T KOG0286|consen   65 TDSRRIVSASQDGKLIVWDSFT--TNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA-EGNVRVSREL  141 (343)
T ss_pred             CCcCeEEeeccCCeEEEEEccc--ccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc-cccceeeeee
Confidence            4556778899999999999887  4568899999 4566666654  5566666788999997653210 1011111122


Q ss_pred             CCCCCceeEeeee-CCEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAV-YNKVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v-~~~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                      ..-..=+.|.... +++|--|+|+ ....-|.++++....|.
T Consensus       142 ~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~  183 (343)
T KOG0286|consen  142 AGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH  183 (343)
T ss_pred             cCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec
Confidence            2222456677766 5888999995 78889999999888774

>KOG0643|consensus

Probab=94.13  E-value=0.84  Score=36.24  Aligned_cols=98  Identities=17%  Similarity=0.234  Sum_probs=67.2

Q ss_pred             CCeEEEEECCccc-----ceeeeeEecC-CCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCC-ceEEEeCC-CC
Q psy16019         14 NGSVFVHSAVSQW-----RRCLHSIQLK-DSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSK-YHTVTLGL-PH   83 (121)
Q Consensus        14 ~g~I~v~~~~~~~-----~~~l~~~~l~-~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~-~~~i~lg~-~~   83 (121)
                      .+.|.+|+..+..     +.+...+..| +.++....  .+..+++|-.||.|..|        |..+ ..++.-+. ..
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~--------da~~g~~~v~s~~~h~  190 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIY--------DARTGKELVDSDEEHS  190 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEE--------EcccCceeeechhhhc
Confidence            4678888877432     2346666666 45555554  57799999999999998        5554 34443322 13


Q ss_pred             CceeEeeeeC-CEEEE-EeC-CeEEEEeCCCCcEEEEEE
Q psy16019         84 HSVRSLAAVY-NKVWC-GYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        84 ~pV~~m~~v~-~~lw~-~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..|..|.+.. ...+. ||. ++-+++|..||++++++.
T Consensus       191 ~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  191 SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            5777787774 33333 555 689999999999999885

>KOG4649|consensus

Probab=94.05  E-value=1.1  Score=35.69  Aligned_cols=104  Identities=17%  Similarity=0.239  Sum_probs=68.7

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEE-EeCCEEEEEecCCcEEEEEcCCC-CCCCCCCceEEEeCCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIV-HVQGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLGLPH   83 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~-~~~~~v~v~LanG~l~Vy~r~~~-g~wd~~~~~~i~lg~~~   83 (121)
                      -+|.+|+-+|...-.+..+.  +..|.--+.+.+-|=. ..+++|.+|.-+|.|.+..-+.+ ..|.+.-...++.    
T Consensus        24 T~v~igSHs~~~~avd~~sG--~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~----   97 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSG--NLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV----   97 (354)
T ss_pred             eEEEEecCCceEEEecCCCC--cEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc----
Confidence            47889999988887777663  3344433333332211 16789999999999999877665 3566433322222    


Q ss_pred             CceeEeeeeCCEEEEEeCC-eEEEEeCCCCcEEEE
Q psy16019         84 HSVRSLAAVYNKVWCGYKN-KIHVVDPKSLDVIRP  117 (121)
Q Consensus        84 ~pV~~m~~v~~~lw~~~gn-~I~Vi~~~tl~i~~~  117 (121)
                      .|  -|...++-+|||+.+ +.+++|+.+..-..+
T Consensus        98 ~a--~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   98 RA--QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             ce--EEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            12  355667999999995 799999998765543

>KOG0319|consensus

Probab=94.04  E-value=0.35  Score=42.55  Aligned_cols=106  Identities=21%  Similarity=0.235  Sum_probs=74.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ..+-.|.-||.+-||+...  ..|.++|+ +|+.|-.+.++++    .+++|-.||++.+|+-.....    -.++....
T Consensus       118 ~LlAtggaD~~v~VWdi~~--~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H  191 (775)
T KOG0319|consen  118 TLLATGGADGRVKVWDIKN--GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILH  191 (775)
T ss_pred             ceEEeccccceEEEEEeeC--CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhh
Confidence            4556677899999999887  57999996 7899999998865    367899999999984432211    01112233


Q ss_pred             CCCCceeEeeeeC--CEEEEEeCCe-EEEEeCCCCcEEEEEE
Q psy16019         81 LPHHSVRSLAAVY--NKVWCGYKNK-IHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ~~~~pV~~m~~v~--~~lw~~~gn~-I~Vi~~~tl~i~~~~~  119 (121)
                      .  ..|++|...+  .++-.+++++ |.|-|..+.+..+.++
T Consensus       192 ~--S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp  231 (775)
T KOG0319|consen  192 K--SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP  231 (775)
T ss_pred             h--hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec
Confidence            3  6788888774  6777777754 6777776666655554

>KOG0643|consensus

Probab=93.99  E-value=2.5  Score=33.58  Aligned_cols=107  Identities=15%  Similarity=0.209  Sum_probs=69.5

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecC------CcEEEEEcCCCCC-CCCCCceEEE
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALAD------GSVAIFRRGPDGQ-WDLSKYHTVT   78 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~Lan------G~l~Vy~r~~~g~-wd~~~~~~i~   78 (121)
                      .+-.|+-|..+.+|+...  -|++.+++.+.+|-..-+. ++..+++..|      +.|.+|+-..+.. -+-++ .+++
T Consensus        66 ~liTGSAD~t~kLWDv~t--Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~k  142 (327)
T KOG0643|consen   66 HLITGSADQTAKLWDVET--GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLK  142 (327)
T ss_pred             eeeeccccceeEEEEcCC--CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEE
Confidence            455688889999999887  5889999999988777764 3344444444      6689997654322 12222 2445


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCC-cEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL-DVIR  116 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl-~i~~  116 (121)
                      +-.|...+.++.--  ++.|-+|-. .+|.+.|+.++ +...
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~  184 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD  184 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee
Confidence            55553455554433  566666655 68999999996 4433

>KOG0316|consensus

Probab=93.90  E-value=0.51  Score=36.91  Aligned_cols=108  Identities=13%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH   83 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~   83 (121)
                      ..+-.|+-||.+..|+...   -.+-+=-+.+||+|+.+.  .+.++++.-|++|-...+..+.  =+.+++=.+=  -.
T Consensus       156 heIvaGS~DGtvRtydiR~---G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk--lL~sYkGhkn--~e  228 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRK---GTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK--LLKSYKGHKN--ME  228 (307)
T ss_pred             cEEEeeccCCcEEEEEeec---ceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH--HHHHhccccc--ce
Confidence            3567889999999999775   223332456789999886  5689999999999999776543  1233322111  12


Q ss_pred             CceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +-++|-+.. ...+.-|+. .+||+.|.....+...|++
T Consensus       229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             eeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence            455664444 344554555 6899999999888877765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.82  E-value=2.9  Score=33.72  Aligned_cols=101  Identities=19%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             CCCCeEEEEec-CCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEec---CCcEEEEEcCCCCCCCCCCceE
Q psy16019          3 SVLPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALA---DGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         3 ~~~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~La---nG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      +.++.+++-+. +..|.+++...  .++.+++.+......+..  ..+.+||+-+   |+++.++.        ....++
T Consensus        83 ~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid--------~~t~~~  152 (381)
T COG3391          83 PAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID--------AATNKV  152 (381)
T ss_pred             CCCCeEEEecCCCCeEEEEcCcc--cceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEe--------CCCCeE
Confidence            34555666664 48888888555  567777776644445554  4669999999   68888883        333333


Q ss_pred             ---EEeCCCCCceeEeee--eCCEEEEEe--CCeEEEEeCCCCcEEE
Q psy16019         77 ---VTLGLPHHSVRSLAA--VYNKVWCGY--KNKIHVVDPKSLDVIR  116 (121)
Q Consensus        77 ---i~lg~~~~pV~~m~~--v~~~lw~~~--gn~I~Vi~~~tl~i~~  116 (121)
                         +..|.  .| .-+++  .++++|...  .|.|.+||+.+..+.+
T Consensus       153 ~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~  196 (381)
T COG3391         153 TATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR  196 (381)
T ss_pred             EEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence               56666  56 33343  368899999  5899999998887763

>KOG0321|consensus

Probab=93.80  E-value=1  Score=39.27  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccce---------------------e-eeeE---e-----cCCCEEEEEEeCC-EEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRR---------------------C-LHSI---Q-----LKDSVLNIVHVQG-RVVC   51 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~---------------------~-l~~~---~-----l~~~V~~i~~~~~-~v~v   51 (121)
                      ..+.-.+.|..||.|.||++..+..+                     . .+.+   +     +..+|+-+.+.++ .+-.
T Consensus       155 ~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaS  234 (720)
T KOG0321|consen  155 TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLAS  234 (720)
T ss_pred             CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeee
Confidence            45667889999999999997654310                     0 0111   1     1124555555443 4444


Q ss_pred             Eec-CCcEEEEEcCCCCCCCCCCceEE---------EeCCC---CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         52 ALA-DGSVAIFRRGPDGQWDLSKYHTV---------TLGLP---HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        52 ~La-nG~l~Vy~r~~~g~wd~~~~~~i---------~lg~~---~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      |.| ||.+-||        |+..+...         ++-.+   ..-+.||..-  +..|++.|- |.||.+|..++.+-
T Consensus       235 aga~D~~iKVW--------DLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  235 AGAADSTIKVW--------DLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             ccCCCcceEEE--------eecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence            455 9999997        55444331         12111   2345566555  589999999 79999999988764

>KOG2096|consensus

Probab=93.75  E-value=2.3  Score=34.64  Aligned_cols=113  Identities=16%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeE--ecC-CCEEEEEEeCC--EEEEEecCCc-EEEEEcC--CCCCCCCCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLK-DSVLNIVHVQG--RVVCALADGS-VAIFRRG--PDGQWDLSK   73 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~-~~V~~i~~~~~--~v~v~LanG~-l~Vy~r~--~~g~wd~~~   73 (121)
                      +|....+-....|+.|.+|++.+...+....+  .++ |-.+-..+.++  .+.|++.+|+ |.||.-.  .||.-.   
T Consensus        95 sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~---  171 (420)
T KOG2096|consen   95 SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS---  171 (420)
T ss_pred             cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC---
Confidence            56777888888999999999999765554444  455 55666676644  6888899986 9999764  444211   


Q ss_pred             ceEEEeC---CC---CCceeEeeeeCCEEEE---EeCCeEEEEeCCCCcEEEEE
Q psy16019         74 YHTVTLG---LP---HHSVRSLAAVYNKVWC---GYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        74 ~~~i~lg---~~---~~pV~~m~~v~~~lw~---~~gn~I~Vi~~~tl~i~~~~  118 (121)
                      .+.++..   -+   +-||-.+-+.++..+.   +.+++|.+.+.. ++...++
T Consensus       172 ~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i  224 (420)
T KOG2096|consen  172 HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI  224 (420)
T ss_pred             cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence            1112221   11   2455555555543332   233678777776 5555443

>KOG2106|consensus

Probab=93.74  E-value=0.98  Score=38.60  Aligned_cols=92  Identities=17%  Similarity=0.305  Sum_probs=63.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg   80 (121)
                      .+.+-.|-.+|.|+||+-..+ +-..+...++..|+++.-. ++.+..|.-|-.|+.        || ++++.   +.+.
T Consensus       257 ngdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~--------Wd-~~y~k~r~~elP  326 (626)
T KOG2106|consen  257 NGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIIL--------WD-DNYRKLRETELP  326 (626)
T ss_pred             CCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEeecCccceEEe--------cc-ccccccccccCc
Confidence            456778888999999997553 2223333677899998865 445666666666666        56 44433   4554


Q ss_pred             CCCCceeEeeeeCCEEEEEeC-CeEEE
Q psy16019         81 LPHHSVRSLAAVYNKVWCGYK-NKIHV  106 (121)
Q Consensus        81 ~~~~pV~~m~~v~~~lw~~~g-n~I~V  106 (121)
                      +.--|||.++.-...+++|.. |.|.-
T Consensus       327 e~~G~iRtv~e~~~di~vGTtrN~iL~  353 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKGDILVGTTRNFILQ  353 (626)
T ss_pred             hhcCCeeEEecCCCcEEEeeccceEEE
Confidence            445799999999877999877 66653

>KOG1272|consensus

Probab=93.62  E-value=0.24  Score=41.70  Aligned_cols=91  Identities=22%  Similarity=0.260  Sum_probs=70.8

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCce-EEEeCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYH-TVTLGL   81 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-~i~lg~   81 (121)
                      .-+.+|.-+|.+..||..+  ++.|-.+ -++++|-+|...+  .+.-.+..|-.+-||        |+..+. +.+.-.
T Consensus       264 aVih~GhsnGtVSlWSP~s--kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIW--------DlR~~~ql~t~~t  333 (545)
T KOG1272|consen  264 AVIHLGHSNGTVSLWSPNS--KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIW--------DLRNFYQLHTYRT  333 (545)
T ss_pred             ceEEEcCCCceEEecCCCC--cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEe--------eeccccccceeec
Confidence            3688999999999999888  6666555 5678999999875  466667778888885        777753 345555


Q ss_pred             CCCceeEeeeeC-CEEEEEeCCeEEEE
Q psy16019         82 PHHSVRSLAAVY-NKVWCGYKNKIHVV  107 (121)
Q Consensus        82 ~~~pV~~m~~v~-~~lw~~~gn~I~Vi  107 (121)
                       +.|...+.+.. +-|.+|.|+.|.|.
T Consensus       334 -p~~a~~ls~SqkglLA~~~G~~v~iw  359 (545)
T KOG1272|consen  334 -PHPASNLSLSQKGLLALSYGDHVQIW  359 (545)
T ss_pred             -CCCccccccccccceeeecCCeeeee
Confidence             38888998885 77899999998886

>KOG0302|consensus

Probab=93.58  E-value=0.32  Score=40.05  Aligned_cols=59  Identities=12%  Similarity=0.206  Sum_probs=47.9

Q ss_pred             CeEEEEecCCeEEEEECCccc-ceeeeeEec-CCCEEEEEEe---CCEEEEEecCCcEEEEEcC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQW-RRCLHSIQL-KDSVLNIVHV---QGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l-~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~   64 (121)
                      +.+--|.+||.+.|+++...- .+.+.+++- .++|+||.++   ..-+-|+.+|.++++|.-.
T Consensus       315 ~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  315 PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            457789999999999988742 357888865 4899999998   5567788899999999764

>KOG0295|consensus

Probab=93.44  E-value=1.3  Score=36.27  Aligned_cols=101  Identities=20%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             EEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-----------------CEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019         10 LGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-----------------GRVVCALADGSVAIFRRGPDGQWDL   71 (121)
Q Consensus        10 iGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-----------------~~v~v~LanG~l~Vy~r~~~g~wd~   71 (121)
                      -+++|..+.+|.+..  ++|+..++-. -+|-||....                 ...++|.-|+++-+        ||+
T Consensus       252 s~s~dqtl~vW~~~t--~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~--------wdv  321 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVAT--KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI--------WDV  321 (406)
T ss_pred             ecCCCceEEEEEecc--chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE--------Eec
Confidence            345678888888777  5666666433 4688877541                 24666666777766        577


Q ss_pred             CCc-eEEEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         72 SKY-HTVTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        72 ~~~-~~i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ..+ .+++++.-..=||.+++. +++--++|.  ..+.|-|..+++-++.+++
T Consensus       322 ~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  322 STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             cCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence            776 446887656899999999 466666666  5799999999999988764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.35  E-value=0.42  Score=27.63  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=29.0

Q ss_pred             ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCC
Q psy16019         34 QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQW   69 (121)
Q Consensus        34 ~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~w   69 (121)
                      .+++.|.++.+++  +.+.+|..||.|.+||-+-...|
T Consensus         9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW   46 (47)
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence            5677899999875  57999999999999988544445

>KOG1587|consensus

Probab=93.25  E-value=0.71  Score=39.67  Aligned_cols=50  Identities=12%  Similarity=0.113  Sum_probs=41.3

Q ss_pred             CeEEEEECCcccceeeeeEecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCC
Q psy16019         15 GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGRVVCALADGSVAIFRRGP   65 (121)
Q Consensus        15 g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~   65 (121)
                      +.++||+..++ .+....+.-+.+|+|++++   .+.+..|+-||+|++|.-..
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~  274 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRK  274 (555)
T ss_pred             ceEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccC
Confidence            47999999985 4566677888999999985   67899999999999985543

>KOG0322|consensus

Probab=93.22  E-value=0.92  Score=35.96  Aligned_cols=108  Identities=18%  Similarity=0.200  Sum_probs=70.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccc---------eeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCC-CCCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWR---------RCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPD-GQWDLS   72 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~---------~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~-g~wd~~   72 (121)
                      +..+..|-|+|.+.+|++.+..+         -+..-..+..+|+++-|..  ++=..|.++-.++.|+-+.+ |  .+.
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g--slq  242 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG--SLQ  242 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC--ccc
Confidence            45678899999999999887422         1111122335888888862  34456677777999987643 3  344


Q ss_pred             CceEEEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEE
Q psy16019         73 KYHTVTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIR  116 (121)
Q Consensus        73 ~~~~i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~  116 (121)
                      -++.+++-+|.  |.-+.+- ++++.+..|  ++|.|++-.|+....
T Consensus       243 ~~~e~~lknpG--v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA  287 (323)
T KOG0322|consen  243 IRKEITLKNPG--VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA  287 (323)
T ss_pred             ccceEEecCCC--ccceEEccCCcEEeecccCCcEEEEEeccCCchh
Confidence            45667777752  2222222 566777666  799999999987653

>KOG0264|consensus

Probab=93.17  E-value=0.79  Score=38.03  Aligned_cols=105  Identities=13%  Similarity=0.154  Sum_probs=65.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccc--e---eeeeEe-cCCCEEEEEEe--CCEEEEEecCCc-EEEEEcCCCCCCCCCCce
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWR--R---CLHSIQ-LKDSVLNIVHV--QGRVVCALADGS-VAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~--~---~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~-l~Vy~r~~~g~wd~~~~~   75 (121)
                      ..++.-|.+++.|.+|+....-+  +   ....++ +.++|-+..++  ...+|.+.+|+. |.++.-..   |..+..+
T Consensus       190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---~~~~~~~  266 (422)
T KOG0264|consen  190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---NTSKPSH  266 (422)
T ss_pred             ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---CCCCCcc
Confidence            35778889999999999766433  1   223343 33677776654  456888777755 55542221   1112223


Q ss_pred             EEEeCCCCCceeEeeeeC--CEEEE-EeC-CeEEEEeCCCCcE
Q psy16019         76 TVTLGLPHHSVRSLAAVY--NKVWC-GYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v~--~~lw~-~~g-n~I~Vi~~~tl~i  114 (121)
                      .+.-.+  .+|.|+....  +.+-+ |+. +.|.++|.++|..
T Consensus       267 ~~~ah~--~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~  307 (422)
T KOG0264|consen  267 SVKAHS--AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK  307 (422)
T ss_pred             cccccC--CceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence            344444  8999999883  44444 443 6899999999764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.08  E-value=2.7  Score=31.13  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE-eCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEe--
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTL--   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~-~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~l--   79 (121)
                      .+...|+-...|.|+.++...   .....+.+|+++-.... .++.+|++..+|. .++... .+     .... ...  
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~---~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~-~g-----~~~~~~~~~~   80 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDT---GEVEVIDLPGPNGMAFDRPDGRLYVADSGGI-AVVDPD-TG-----KVTVLADLPD   80 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTT---TEEEEEESSSEEEEEEECTTSEEEEEETTCE-EEEETT-TT-----EEEEEEEEET
T ss_pred             CCEEEEEEcCCCEEEEEECCC---CeEEEEecCCCceEEEEccCCEEEEEEcCce-EEEecC-CC-----cEEEEeeccC
Confidence            455677777899999999877   33444677775544444 4789999987555 555221 12     1112 233  


Q ss_pred             CC-CCCceeEeeee-CCEEEEEeC----------CeEEEEeCCCCcEEEE
Q psy16019         80 GL-PHHSVRSLAAV-YNKVWCGYK----------NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        80 g~-~~~pV~~m~~v-~~~lw~~~g----------n~I~Vi~~~tl~i~~~  117 (121)
                      +. +.....-+.+. .+.||++..          .+|+.+++. +++..-
T Consensus        81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV  129 (246)
T ss_dssp             TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred             CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence            22 11222234444 478999876          359999988 666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0642|consensus

Probab=93.07  E-value=0.5  Score=40.40  Aligned_cols=107  Identities=16%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             CCCeEEEEecCCeEEEEECCccc------ceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCC-CCCCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQW------RRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDG-QWDLSK   73 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~------~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g-~wd~~~   73 (121)
                      ..|-+..+++||.|-+|++....      -+++++++ +.++|+|..+..  ..+|-|..||+|.-|.-...+ +.|..+
T Consensus       305 sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d  384 (577)
T KOG0642|consen  305 SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD  384 (577)
T ss_pred             CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC
Confidence            46788999999999999983321      13577885 448999999864  489999999999999665332 223222


Q ss_pred             ceEE---EeCCCCCceeEeeeeC--CEE-EEEeCCeEEEEeCCC
Q psy16019         74 YHTV---TLGLPHHSVRSLAAVY--NKV-WCGYKNKIHVVDPKS  111 (121)
Q Consensus        74 ~~~i---~lg~~~~pV~~m~~v~--~~l-w~~~gn~I~Vi~~~t  111 (121)
                      |.++   =+|. ..-|.-++...  ++| =|+.-..++..++..
T Consensus       385 p~vl~~~l~Gh-tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  385 PSVLSGTLLGH-TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             cchhccceecc-ccceeeeeecccccceeeecCCceEEeeccCC
Confidence            3232   1222 24555555553  333 222235666665543

>KOG0282|consensus

Probab=93.04  E-value=0.43  Score=40.16  Aligned_cols=102  Identities=19%  Similarity=0.183  Sum_probs=76.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      -.+.-|+.|+.|+||++.+ .++|+.++..+ .+|.++.+.  +.+.+.+.=|+.|-.        ||++.-+.+.=...
T Consensus       228 hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl--------wDtETG~~~~~f~~  298 (503)
T KOG0282|consen  228 HLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL--------WDTETGQVLSRFHL  298 (503)
T ss_pred             eEEEecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeee--------eccccceEEEEEec
Confidence            3567788999999999888 47899998755 799998876  346777888888877        58887766422222


Q ss_pred             CCceeEeeee--C-CEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019         83 HHSVRSLAAV--Y-NKVWCGYK-NKIHVVDPKSLDVIR  116 (121)
Q Consensus        83 ~~pV~~m~~v--~-~~lw~~~g-n~I~Vi~~~tl~i~~  116 (121)
                      ..++.|+...  + +.+-+|-. .+|.-.|..+.++.+
T Consensus       299 ~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  299 DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence            3678888877  3 56666666 589999999998764

>KOG1523|consensus

Probab=92.96  E-value=1.6  Score=35.28  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             CCCeEEEEecCCeEEEEECCccc-ceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQW-RRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ....+-++.++..++||+..... -+..++++.+ ..|++|...  .|++.-+..|-.=.||+..++|.|. ..+-++.+
T Consensus        21 drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk-ptlvLlRi   99 (361)
T KOG1523|consen   21 DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK-PTLVLLRI   99 (361)
T ss_pred             CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec-cceeEEEe
Confidence            44567789999999999976643 3567788766 477777764  6789999999999999988899996 44555666


Q ss_pred             CCCCCceeEee--eeCCEEEEEeCCeEEEEe
Q psy16019         80 GLPHHSVRSLA--AVYNKVWCGYKNKIHVVD  108 (121)
Q Consensus        80 g~~~~pV~~m~--~v~~~lw~~~gn~I~Vi~  108 (121)
                      ..   .++|+.  +.++++..|+|.++.-+.
T Consensus       100 Nr---AAt~V~WsP~enkFAVgSgar~isVc  127 (361)
T KOG1523|consen  100 NR---AATCVKWSPKENKFAVGSGARLISVC  127 (361)
T ss_pred             cc---ceeeEeecCcCceEEeccCccEEEEE
Confidence            65   566765  457899999997665543

>KOG0772|consensus

Probab=92.92  E-value=0.59  Score=39.99  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=68.6

Q ss_pred             CCCeEEEEecCCeEEEEECCccccee---eeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRC---LHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-   76 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~---l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-   76 (121)
                      ..+.+-.|..||+|.+|+........   ++.-.++ ..|+||.+.  .+++..=.-|++|-||        |+..++- 
T Consensus       328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW--------DLrq~kkp  399 (641)
T KOG0772|consen  328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW--------DLRQFKKP  399 (641)
T ss_pred             CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee--------eccccccc
Confidence            34556678899999999986644433   3333445 489999976  4566666677777775        7766633 


Q ss_pred             E--EeCCC-C--------CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         77 V--TLGLP-H--------HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        77 i--~lg~~-~--------~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +  ..|-| .        .|=-.|.+.+..+=-++. ...+++|+.|+++...+.+
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i  455 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI  455 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence            1  22221 1        233334444444444555 4699999999999887643

>KOG2445|consensus

Probab=92.90  E-value=1.4  Score=35.54  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             EEEecCCeEEEEECCccccee----eeeEe--------cCCCEEEEEEeC----CEEEEEecCC------cEEEEEcCCC
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRC----LHSIQ--------LKDSVLNIVHVQ----GRVVCALADG------SVAIFRRGPD   66 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~----l~~~~--------l~~~V~~i~~~~----~~v~v~LanG------~l~Vy~r~~~   66 (121)
                      -....||.|.||.+.+...-.    .+.|+        ...+-+|+-.+.    ...+|..+|-      .+.||+++.+
T Consensus       130 A~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~  209 (361)
T KOG2445|consen  130 AAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN  209 (361)
T ss_pred             EEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC
Confidence            344579999999998864322    12233        112556776653    2466666665      8999999877


Q ss_pred             C-CCCCCCceEEEeCCCCCceeEeeeeC------CEEEEEeCCeEEEEeCCC
Q psy16019         67 G-QWDLSKYHTVTLGLPHHSVRSLAAVY------NKVWCGYKNKIHVVDPKS  111 (121)
Q Consensus        67 g-~wd~~~~~~i~lg~~~~pV~~m~~v~------~~lw~~~gn~I~Vi~~~t  111 (121)
                      + .|-    ++-+|-+-..|||.+....      --|..||++.|+|++.+.
T Consensus       210 ~rKw~----kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~  257 (361)
T KOG2445|consen  210 GRKWL----KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKV  257 (361)
T ss_pred             cceee----eehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEee
Confidence            6 452    1113334458999988773      457889998899987764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.87  E-value=4  Score=32.43  Aligned_cols=112  Identities=11%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             CCeEEEEecC------------CeEEEEECCcccceeeee-EecCCCEEEEEEeCCEEEEEecC-CcEEEEEcC-CCCCC
Q psy16019          5 LPTMWLGSQN------------GSVFVHSAVSQWRRCLHS-IQLKDSVLNIVHVQGRVVCALAD-GSVAIFRRG-PDGQW   69 (121)
Q Consensus         5 ~~tvwiGt~~------------g~I~v~~~~~~~~~~l~~-~~l~~~V~~i~~~~~~v~v~Lan-G~l~Vy~r~-~~g~w   69 (121)
                      ++.+|.||-.            |.||-++......+.+.. +..|..+ ++-..+..+|++-.. +.|..|.-. .++  
T Consensus       121 dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGl-a~SpDg~tly~aDT~~~~i~r~~~d~~~g--  197 (307)
T COG3386         121 DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGL-AFSPDGKTLYVADTPANRIHRYDLDPATG--  197 (307)
T ss_pred             CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCce-EECCCCCEEEEEeCCCCeEEEEecCcccC--
Confidence            4678888866            567777754322333333 5555544 444456688888876 677777655 333  


Q ss_pred             CCCCceE-EEeC-CCCCceeEeeeeCCEEE-EEeCC--eEEEEeCCCCcEEEEEEe
Q psy16019         70 DLSKYHT-VTLG-LPHHSVRSLAAVYNKVW-CGYKN--KIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        70 d~~~~~~-i~lg-~~~~pV~~m~~v~~~lw-~~~gn--~I~Vi~~~tl~i~~~~~~  120 (121)
                      +..+... +... .+..|=-.-.-.++.+| ++..+  +|.+++++ ++....+++
T Consensus       198 ~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         198 PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            2223222 2221 23455544444579999 55554  99999998 777766553

>KOG4190|consensus

Probab=92.87  E-value=0.21  Score=43.26  Aligned_cols=105  Identities=19%  Similarity=0.288  Sum_probs=68.6

Q ss_pred             EEEecCCeEEEEECCcccceeeeeE-ecC--CCEEEEEEeCC----EEEEE-ecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRCLHSI-QLK--DSVLNIVHVQG----RVVCA-LADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~l~~~-~l~--~~V~~i~~~~~----~v~v~-LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      .+.+-||.||+|+.--  -+.+.++ .-|  +++.-|++.++    .+.+| .+..++-.|.-.. +.| +++.++-.-.
T Consensus       798 ~i~ScD~giHlWDPFi--gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~-~~E~kVcna~  873 (1034)
T KOG4190|consen  798 SIASCDGGIHLWDPFI--GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEW-TCELKVCNAP  873 (1034)
T ss_pred             eeeeccCcceeecccc--cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc-ccc-eeeEEeccCC
Confidence            6777899999998443  1233322 233  45555555433    45666 6778888885433 445 2444444444


Q ss_pred             CCCCceeEeeee--CCEEEEEeCC-eEEEEeCCCCcEEEE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYKN-KIHVVDPKSLDVIRP  117 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~gn-~I~Vi~~~tl~i~~~  117 (121)
                      -|+.-+||+++.  ++.+.+|-.| .|.++|+.++++.++
T Consensus       874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs  913 (1034)
T KOG4190|consen  874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS  913 (1034)
T ss_pred             CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc
Confidence            456779999988  5788888775 799999999997764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=92.86  E-value=4.3  Score=36.96  Aligned_cols=78  Identities=15%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCC
Q psy16019         37 DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        37 ~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~t  111 (121)
                      +.|.++.|.  .+.+++++++|.|.+++-..+    .++..+=.+|....-|.||.-..  .-|....| +++.++ ..+
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~----~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m-t~~  150 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPD----PDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM-TRD  150 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCC----CCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE-ecc
Confidence            579999987  457999999999999965542    22333323455557999999884  56788888 578888 678


Q ss_pred             CcEEEEEE
Q psy16019        112 LDVIRPVT  119 (121)
Q Consensus       112 l~i~~~~~  119 (121)
                      +++.....
T Consensus       151 fd~i~E~~  158 (928)
T PF04762_consen  151 FDPISEVP  158 (928)
T ss_pred             ceEEEEee
Confidence            88776654

>KOG0307|consensus

Probab=92.82  E-value=0.25  Score=44.96  Aligned_cols=106  Identities=14%  Similarity=0.187  Sum_probs=73.5

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecC-C--CEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCc----e
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-D--SVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKY----H   75 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~--~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~----~   75 (121)
                      ..+.-|+.+|+..||+++.  ++.+-.+... .  .+-.|.++.+   ++.+|..|-..=|+     -.||+...    +
T Consensus       175 hILAS~s~sg~~~iWDlr~--~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi-----qlWDlR~assP~k  247 (1049)
T KOG0307|consen  175 HILASGSPSGRAVIWDLRK--KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI-----QLWDLRFASSPLK  247 (1049)
T ss_pred             HHhhccCCCCCceeccccC--CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee-----EeecccccCCchh
Confidence            3455678899999999987  3444333322 2  2446677643   89999988777666     56886543    3


Q ss_pred             EEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         76 TVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +++...  .-|-+|.-.  +.++-.+||  |+|++-|++|+++..+|.+
T Consensus       248 ~~~~H~--~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  248 ILEGHQ--RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             hhcccc--cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            333333  677788777  357877777  8999999999999988765

>KOG1332|consensus

Probab=92.81  E-value=0.44  Score=37.37  Aligned_cols=62  Identities=24%  Similarity=0.443  Sum_probs=46.2

Q ss_pred             EecCCeEEEEECCcc-cceeeeeE-ecCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019         11 GSQNGSVFVHSAVSQ-WRRCLHSI-QLKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus        11 Gt~~g~I~v~~~~~~-~~~~l~~~-~l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      .+-||++.|+.-... |.| .... .+.++|.++.....    .++.|.+||+|-|++-+.+|.|+...
T Consensus        76 csYDgkVIiWke~~g~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k  143 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGRWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK  143 (299)
T ss_pred             eecCceEEEEecCCCchhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence            356999999985543 333 2222 45589999987543    68999999999999999999998654

>KOG0267|consensus

Probab=92.77  E-value=0.31  Score=42.89  Aligned_cols=107  Identities=13%  Similarity=0.133  Sum_probs=75.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEE--EecCCcEEEEEcCCCCCCCCCCc-eEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVC--ALADGSVAIFRRGPDGQWDLSKY-HTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v--~LanG~l~Vy~r~~~g~wd~~~~-~~i~   78 (121)
                      ..+.++-.|+.+|.|-+|++.+  -+.++++. +.+.++++.++...=|.  |..|+.+.+|        |...- +.-.
T Consensus        80 ~~E~LlaagsasgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw--------D~Rk~Gc~~~  149 (825)
T KOG0267|consen   80 TSERLLAAGSASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW--------DIRKKGCSHT  149 (825)
T ss_pred             cchhhhcccccCCceeeeehhh--hhhhhhhhccccCcceeeeccceEEeccccccccceeh--------hhhccCceee
Confidence            3455777899999999999998  35566654 34677777888777777  7777877775        55421 2222


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+.-..-|+++.+..+-=|.+.|   +.|.|.|..-+++.+.|+
T Consensus       150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence            22223678888888766677666   579999998888887775

>KOG0302|consensus

Probab=92.70  E-value=1.8  Score=35.73  Aligned_cols=92  Identities=18%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             EEEecCCeEEEEECCcccce-eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCc------eEEEe
Q psy16019          9 WLGSQNGSVFVHSAVSQWRR-CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKY------HTVTL   79 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~-~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~------~~i~l   79 (121)
                      --++=||.|-|++....-|+ ++-+=.+++-|--|-++  ...+-.|.-||++-|+        |+...      ..++.
T Consensus       274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw--------DLR~~~~~~pVA~fk~  345 (440)
T KOG0302|consen  274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW--------DLRQFKSGQPVATFKY  345 (440)
T ss_pred             EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE--------EhhhccCCCcceeEEe
Confidence            34566999999999885444 44442344444445554  3445556667999997        44443      23455


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK  110 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~  110 (121)
                      ..  .||+|+.-.  +..+.++.|  |+|.+-|..
T Consensus       346 Hk--~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  346 HK--APITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             cc--CCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            55  899999977  455555444  899988753

>KOG1517|consensus

Probab=92.60  E-value=2.3  Score=39.43  Aligned_cols=98  Identities=15%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEE---eCCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLG   80 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~---~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg   80 (121)
                      .+.++.+-..|-||++..  .++.+.+...  ..|+.+..   ++|.+.||.+||.|-+|.|.-.      ++ ..+..-
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~--E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a------~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHK--EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA------PPDSLVCVY 1250 (1387)
T ss_pred             eEEecCCeeEEEEEeccc--ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC------Cccccceee
Confidence            456666677888999876  3456655443  35665553   4789999999999999987532      12 122222


Q ss_pred             ---CCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCC
Q psy16019         81 ---LPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        81 ---~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl  112 (121)
                         ...+||--+.+-.   ++|..|+. +.|.++|...-
T Consensus      1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence               2234566555542   68999999 58999999874

>KOG2695|consensus

Probab=92.59  E-value=0.27  Score=40.13  Aligned_cols=61  Identities=16%  Similarity=0.289  Sum_probs=50.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCccc---ceeeeeEecCCCEEEEEE---eCCEEEEEecCCcEEEEEc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQW---RRCLHSIQLKDSVLNIVH---VQGRVVCALADGSVAIFRR   63 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~---~~~l~~~~l~~~V~~i~~---~~~~v~v~LanG~l~Vy~r   63 (121)
                      ...|.|.-|..+|.|+++++...-   ..+.+.+-++++|+|++.   .+.++.|+.-+|+|..|+-
T Consensus       262 ~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  262 GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             ccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            346889999999999999988842   136788899999999764   5678999999999999854

>KOG0269|consensus

Probab=92.42  E-value=0.56  Score=41.58  Aligned_cols=57  Identities=18%  Similarity=0.127  Sum_probs=45.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCCEEEEEec--CCcEEEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQGRVVCALA--DGSVAIF   61 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~~v~v~La--nG~l~Vy   61 (121)
                      .++.---+.++|.+..|++..+ +++...+ .+.++|+|+-++.|+.|.|.+  |+.+-||
T Consensus       188 ~~~~F~s~~dsG~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW  247 (839)
T KOG0269|consen  188 YGNKFASIHDSGYLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW  247 (839)
T ss_pred             CCceEEEecCCceEEEeeccCc-hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence            4556677889999999999985 5565555 566999999999999888765  6778886

>KOG0321|consensus

Probab=92.41  E-value=0.42  Score=41.61  Aligned_cols=96  Identities=18%  Similarity=0.280  Sum_probs=65.0

Q ss_pred             CeEEEEecCCeEEEEECCcccce-eeeeE---ecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceE--
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRR-CLHSI---QLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHT--   76 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~-~l~~~---~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~--   76 (121)
                      ..+.++-|+|.|-+|+..+.--+ +..+|   ..+ .+|++++...+  ++.-+++|-++-.|        |++.-.+  
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W--------dvk~s~l~G  136 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW--------DVKTSRLVG  136 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee--------eeccceeec
Confidence            47899999999999998773212 22333   233 69999998865  45666666666665        6666555  


Q ss_pred             --EEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019         77 --VTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK  110 (121)
Q Consensus        77 --i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~  110 (121)
                        +.+|. ..+|++++..  +..++|.-|  +.|.|-|+.
T Consensus       137 ~~~~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen  137 GRLNLGH-TGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             ceeeccc-ccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence              45666 3788888877  466676444  578877764

>KOG0265|consensus

Probab=92.35  E-value=3.3  Score=33.31  Aligned_cols=106  Identities=10%  Similarity=0.128  Sum_probs=69.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      +..+++--|.-|..|++|+..+.. +..+.++.. ++|+.+++.  .+.+|.+.+|-+|.+|        |.+.-+.+ +
T Consensus        57 P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w--------D~~tG~~~rk  127 (338)
T KOG0265|consen   57 PDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW--------DAETGKRIRK  127 (338)
T ss_pred             CCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCEEEEecCCceEEEE--------ecccceeeeh
Confidence            456677778889999999966532 334556665 799999986  5689999999999997        55544332 2


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~  117 (121)
                      .-.-..=|.+|.+.  +-.|-|+-.  .++.+.|..+-+-.+.
T Consensus       128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t  170 (338)
T KOG0265|consen  128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT  170 (338)
T ss_pred             hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence            21111334444433  456666555  5899999994443333

>KOG0275|consensus

Probab=92.27  E-value=5.4  Score=32.71  Aligned_cols=109  Identities=12%  Similarity=0.143  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      +.....+--.+.||.+-||+...  .+|+.+++-+   .+|..+...   .....|.--..++.|.        +....-
T Consensus       357 t~dG~~iisaSsDgtvkvW~~Kt--teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im--------n~qGQv  426 (508)
T KOG0275|consen  357 TDDGHHIISASSDGTVKVWHGKT--TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM--------NMQGQV  426 (508)
T ss_pred             cCCCCeEEEecCCccEEEecCcc--hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE--------eccceE
Confidence            35567788889999999999887  6899998654   267666543   4466666666777776        233332


Q ss_pred             EEEeCC--C--CCceeEee-eeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         76 TVTLGL--P--HHSVRSLA-AVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        76 ~i~lg~--~--~~pV~~m~-~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +-++.+  .  ..=|.|++ +-+.-+||.-. ...|.|+..++++|+.+.|
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V  477 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV  477 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec
Confidence            323322  1  23455543 34566777544 5789999999999999876

>KOG0307|consensus

Probab=92.19  E-value=0.14  Score=46.47  Aligned_cols=99  Identities=18%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CeEEEEecCCeEEEEECCcc---cce-eeeeE-ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQ---WRR-CLHSI-QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-   76 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~---~~~-~l~~~-~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-   76 (121)
                      +.+-=|.|||.|-+|+...-   ... .+.+. +++++|+.+.++   +|.+-.|-.||.|.||        |++++.. 
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW--------Dlnn~~tP  152 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW--------DLNKPETP  152 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe--------ccCCcCCC
Confidence            34666889999999997762   112 35555 567899998886   3344455556999995        7777655 


Q ss_pred             EEeCC--CCCceeEeeeeC--CEEEEEeC--CeEEEEeCCCC
Q psy16019         77 VTLGL--PHHSVRSLAAVY--NKVWCGYK--NKIHVVDPKSL  112 (121)
Q Consensus        77 i~lg~--~~~pV~~m~~v~--~~lw~~~g--n~I~Vi~~~tl  112 (121)
                      .+.|+  ++.=|.|+.-+.  .++.|+-+  +++.|-|.+--
T Consensus       153 ~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~  194 (1049)
T KOG0307|consen  153 FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK  194 (1049)
T ss_pred             CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence            44443  245688888774  45555444  47888877654

>KOG0286|consensus

Probab=92.17  E-value=5.2  Score=32.15  Aligned_cols=105  Identities=14%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEE-EecCCcEEEEEcCCCCCCCCCCce-EEEe
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVC-ALADGSVAIFRRGPDGQWDLSKYH-TVTL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v-~LanG~l~Vy~r~~~g~wd~~~~~-~i~l   79 (121)
                      ..+|---|.-|+.-.+|+..+  -.|.++|.-+ +-|-.++|++ +.-|+ |..||+--.|        |+..-+ +...
T Consensus       198 ~~ntFvSg~cD~~aklWD~R~--~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRly--------DlRaD~~~a~y  267 (343)
T KOG0286|consen  198 DGNTFVSGGCDKSAKLWDVRS--GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLY--------DLRADQELAVY  267 (343)
T ss_pred             CCCeEEecccccceeeeeccC--cceeEeecccccccceEEEccCCCeeeecCCCceeEEE--------eecCCcEEeee
Confidence            456777788899999999998  4899999654 6777888874 34555 5556889999        554432 2233


Q ss_pred             CCC--CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         80 GLP--HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~--~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      ..+  ..||.+++..  +.-|++|+. .++.|-|.-..+..-.+
T Consensus       268 s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  268 SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence            322  5799998877  566788888 47888887666554433

>KOG0640|consensus

Probab=92.13  E-value=0.51  Score=38.24  Aligned_cols=104  Identities=13%  Similarity=0.216  Sum_probs=73.9

Q ss_pred             eEEEEecCCeEEEEECCccc-ceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC-
Q psy16019          7 TMWLGSQNGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP-   82 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~-   82 (121)
                      .+--|+.|++|-+|+...+. |+-.+.++-..+|.||-++  ++.+.||..--++-+|        |++.++-+.=..| 
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY--------dv~T~QcfvsanPd  257 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY--------DVNTYQCFVSANPD  257 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE--------eccceeEeeecCcc
Confidence            34568899999999976643 3444555555689999987  5689999999999999        7777655432334 


Q ss_pred             ---CCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         83 ---HHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        83 ---~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                         ...|.+.-.. .+.||+...  ..|.+.|-.+.+-.++|
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~  299 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI  299 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence               4578887777 478887444  57999988776654443

>KOG0973|consensus

Probab=92.08  E-value=0.5  Score=42.76  Aligned_cols=57  Identities=25%  Similarity=0.254  Sum_probs=46.7

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeE-ecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSI-QLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGP   65 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~   65 (121)
                      .+-+|++|++|.||++..  .+++--+ .+- .+|.++...  +-.+||+.-||+|+++.-..
T Consensus       296 i~AvgSqDrSlSVW~T~~--~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  296 IAAVGSQDRSLSVWNTAL--PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEEEecCCccEEEEecCC--CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            577899999999999865  5665544 454 689999998  55899999999999998764

>KOG0263|consensus

Probab=92.07  E-value=0.45  Score=41.74  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=64.3

Q ss_pred             EecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCE--EEEEecCCcEEEEEcCCCCCCCCCCceEEEe--CCCCCc
Q psy16019         11 GSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGR--VVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GLPHHS   85 (121)
Q Consensus        11 Gt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~--v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l--g~~~~p   85 (121)
                      |+.|+.--+|+...  .+.+..+.-+ +-|-|..+++|.  ++-|.+|-++-+|        |...-..+.+  |. ..|
T Consensus       511 as~D~tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlW--------Dv~~G~~VRiF~GH-~~~  579 (707)
T KOG0263|consen  511 ASHDQTARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLW--------DVSTGNSVRIFTGH-KGP  579 (707)
T ss_pred             cCCCceeeeeeccc--CCchhhhcccccccceEEECCcccccccCCCCceEEEE--------EcCCCcEEEEecCC-CCc
Confidence            44566666676665  3555555434 678889998765  5555566667664        6655434322  32 489


Q ss_pred             eeEeeeeCCEEEEEeC---CeEEEEeCCCCcEEEE
Q psy16019         86 VRSLAAVYNKVWCGYK---NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        86 V~~m~~v~~~lw~~~g---n~I~Vi~~~tl~i~~~  117 (121)
                      |.+|.....-.|.|+|   +.|.+-|..++++...
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~  614 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ  614 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh
Confidence            9999999777777777   6899999998776543

>KOG0263|consensus

Probab=91.82  E-value=2.1  Score=37.69  Aligned_cols=96  Identities=20%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEec--CCcEEEEEcCCCCCCCCCCceEE-E-e
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALA--DGSVAIFRRGPDGQWDLSKYHTV-T-L   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~La--nG~l~Vy~r~~~g~wd~~~~~~i-~-l   79 (121)
                      .+.|--|+-|..+.+|+....  .++..|. +.++|+++.+..+-.|.|++  ||.|.+|        |+.+-..+ . .
T Consensus       547 s~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW--------Dl~~~~~v~~l~  616 (707)
T KOG0263|consen  547 SNYVATGSSDRTVRLWDVSTG--NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW--------DLANGSLVKQLK  616 (707)
T ss_pred             ccccccCCCCceEEEEEcCCC--cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE--------EcCCCcchhhhh
Confidence            345667888999999997763  3444443 56899999999776666655  5888886        77665443 2 2


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t  111 (121)
                      |. ...|.+|...  ++-|..|.+ |.|.+-|...
T Consensus       617 ~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  617 GH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cc-cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            32 4788888887  344555544 7899887654

>KOG0973|consensus

Probab=91.77  E-value=3.5  Score=37.56  Aligned_cols=109  Identities=12%  Similarity=0.178  Sum_probs=70.3

Q ss_pred             CCCCCeEEEEecCCeEEEEECCc-----------------ccceeeeeE-ecCCCEEEEEEeCC-EEEE-EecCCcEEEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVS-----------------QWRRCLHSI-QLKDSVLNIVHVQG-RVVC-ALADGSVAIF   61 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~-----------------~~~~~l~~~-~l~~~V~~i~~~~~-~v~v-~LanG~l~Vy   61 (121)
                      +.....+..|++|+-|.||.-..                 +|| +...+ .++.-|+++.+..+ ..+| +..|++|.+|
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence            45567889999999999987551                 122 23344 45679999999833 3444 4567899998


Q ss_pred             EcCCCCCCCCCCceEEEe-CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         62 RRGPDGQWDLSKYHTVTL-GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        62 ~r~~~g~wd~~~~~~i~l-g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                              +...++.+++ -.-+.+|.-+..-  ++.+.--.. ..|.|....+..++|++.
T Consensus       157 --------n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  157 --------NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             --------ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence                    4445544322 2223566655544  455554444 479999988899998863

>KOG1188|consensus

Probab=91.74  E-value=1.7  Score=35.38  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCce---E
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKYH---T   76 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~---~   76 (121)
                      +..|-+|-.+|.|.+|+-..  -+.+..++- |+.+-.+.+.+    .-|++|..||+|-+|        |+....   .
T Consensus        40 e~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w--------D~Rs~~e~a~  109 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW--------DIRSQAESAR  109 (376)
T ss_pred             ceeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE--------Eeecchhhhh
Confidence            34588999999999999776  356777764 46666777654    579999999999998        444332   2


Q ss_pred             EEe-CCCCCceeEeeee--CCEEEEEeC-----CeEEEEeCCCCc
Q psy16019         77 VTL-GLPHHSVRSLAAV--YNKVWCGYK-----NKIHVVDPKSLD  113 (121)
Q Consensus        77 i~l-g~~~~pV~~m~~v--~~~lw~~~g-----n~I~Vi~~~tl~  113 (121)
                      +.. +.|+.|-.|+...  ++.+.||.-     -.|++.|.+.-+
T Consensus       110 ~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q  154 (376)
T KOG1188|consen  110 ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ  154 (376)
T ss_pred             eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence            333 3345789999886  455566644     256666766544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=91.65  E-value=7.5  Score=33.35  Aligned_cols=103  Identities=11%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             CCCeEEEEecCC-eEEEEECCcccceeeeeEecC-CCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          4 VLPTMWLGSQNG-SVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g-~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ....+-+||.|| .|-||+....   ..+.+.-+ +.|+.++...+  ++.||--++.|.+++-.+      .++++|.=
T Consensus       370 ~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn------gnv~~idk  440 (668)
T COG4946         370 DPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN------GNVRLIDK  440 (668)
T ss_pred             CCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC------CCeeEecc
Confidence            344678999999 8889998763   23444334 67888887755  466666667788884322      23344332


Q ss_pred             CCCCCceeEeeeeCCEEEEEeC-------CeEEEEeCCCCcEEE
Q psy16019         80 GLPHHSVRSLAAVYNKVWCGYK-------NKIHVVDPKSLDVIR  116 (121)
Q Consensus        80 g~~~~pV~~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~  116 (121)
                      +. ..=|.-+..+.+.=|.|++       -.|.++|+++.++-.
T Consensus       441 S~-~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         441 SE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             cc-cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            22 2345666677777788776       368999999888754

>KOG1587|consensus

Probab=91.55  E-value=2.5  Score=36.33  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=44.9

Q ss_pred             CCeEEEEecCCeEEEEECCcccce-----eeeeEecCCCEEEEEEeC----CEEEEEecCCcEEEEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRR-----CLHSIQLKDSVLNIVHVQ----GRVVCALADGSVAIFR   62 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~-----~l~~~~l~~~V~~i~~~~----~~v~v~LanG~l~Vy~   62 (121)
                      .+.|..|+.+|.|.+|+......+     +.+.-.++++|+.+.+..    ..+|.+.+||.|.-|+
T Consensus       255 p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  255 PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            457888999999999998875432     233445678999998753    4599999999999983

>KOG1407|consensus

Probab=91.46  E-value=3  Score=33.03  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=70.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE-e-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH-V-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~-~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ++...++.+|..|-.|-.++...  .+.+++.+.+--+-.|.. . ++..|.-.++|.+-|.+-.     .+++..  ++
T Consensus       115 sp~g~~~~~~~kdD~it~id~r~--~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-----sLkpv~--si  185 (313)
T KOG1407|consen  115 SPDGEYIAVGNKDDRITFIDART--YKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-----SLKPVQ--SI  185 (313)
T ss_pred             cCCCCEEEEecCcccEEEEEecc--cceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc-----cccccc--cc
Confidence            35567888999999999999887  567777777644444444 3 3455566677999997322     122222  33


Q ss_pred             CCCCCceeEeeee----CCEEEEEeCC-eEEEEeCCCCcEEEEE
Q psy16019         80 GLPHHSVRSLAAV----YNKVWCGYKN-KIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~~~pV~~m~~v----~~~lw~~~gn-~I~Vi~~~tl~i~~~~  118 (121)
                      ..  +|..|+.+.    ++.+..|..+ .+-.-|++-|--+|.|
T Consensus       186 ~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  186 KA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             cc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            33  677787765    6778888885 6777788777777765

>KOG4378|consensus

Probab=91.34  E-value=2.4  Score=36.36  Aligned_cols=72  Identities=7%  Similarity=0.018  Sum_probs=46.8

Q ss_pred             cCCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeCCCCCceeEe
Q psy16019         13 QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGLPHHSVRSL   89 (121)
Q Consensus        13 ~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg~~~~pV~~m   89 (121)
                      -|.+|++|+..+  ++...++.-..+-..+.+  .+..+.+|.++|.|..|.-..     ...| ++++..+  .+|+|+
T Consensus       229 ~Dkki~~yD~~s--~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~-----~k~Pv~v~sah~--~sVt~v  299 (673)
T KOG4378|consen  229 YDKKINIYDIRS--QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS-----TKAPVAVRSAHD--ASVTRV  299 (673)
T ss_pred             ccceEEEeeccc--ccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc-----CCCCceEeeecc--cceeEE
Confidence            478999999887  554444432223333344  456899999999999994321     2223 5566666  678888


Q ss_pred             eeeC
Q psy16019         90 AAVY   93 (121)
Q Consensus        90 ~~v~   93 (121)
                      +...
T Consensus       300 afq~  303 (673)
T KOG4378|consen  300 AFQP  303 (673)
T ss_pred             Eeee
Confidence            8663

>smart00320 WD40 WD40 repeats

Probab=91.33  E-value=0.88  Score=21.58  Aligned_cols=33  Identities=15%  Similarity=0.340  Sum_probs=24.1

Q ss_pred             eeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEE
Q psy16019         29 CLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIF   61 (121)
Q Consensus        29 ~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy   61 (121)
                      +...+. ..+.|.++.+..  +.++.+..||.+.+|
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~   39 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLW   39 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEc
Confidence            344444 346888988864  488889999999887

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1332|consensus

Probab=91.26  E-value=1.5  Score=34.47  Aligned_cols=65  Identities=22%  Similarity=0.463  Sum_probs=49.1

Q ss_pred             CCCeEEEEecCCeEEEEECCcc---cce-eeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQ---WRR-CLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWD   70 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~---~~~-~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd   70 (121)
                      .+.+|--++|||.+.||.....   |++ .++.  .|+++-.+-.  ..|.+-|+..|..+.+|..+.+|.|.
T Consensus       222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~  292 (299)
T KOG1332|consen  222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE  292 (299)
T ss_pred             CceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence            3567888999999999986642   332 2333  5676666554  47889999999999999999999985

>KOG0288|consensus

Probab=91.24  E-value=0.96  Score=37.59  Aligned_cols=100  Identities=17%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCC
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHH   84 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~   84 (121)
                      +--|+.|..|-.|++..  ..|.+++..-+.+.+|....-.++.|=-|++|-.|        |..+++.   +.+|.   
T Consensus       276 vVsgs~DRtiK~WDl~k--~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfw--------D~Rs~~~~~sv~~gg---  342 (459)
T KOG0288|consen  276 VVSGSADRTIKLWDLQK--AYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFW--------DIRSADKTRSVPLGG---  342 (459)
T ss_pred             eeeccccchhhhhhhhh--hheeccccccccccceEecceeeeecccccceEEE--------eccCCceeeEeecCc---
Confidence            45566666777777665  45777765557888888877677778888887765        6555533   44444   


Q ss_pred             ceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         85 SVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        85 pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      -|.++...  +.+|-.... |.+.+||..+.+|.+.|.+
T Consensus       343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence            78888877  345544444 8999999999999998875

>KOG4714|consensus

Probab=90.88  E-value=1.4  Score=34.86  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEe---CCEEEEEecCCcEEEEEcCC-----------CCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHV---QGRVVCALADGSVAIFRRGP-----------DGQ   68 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~-----------~g~   68 (121)
                      .|..++.||++|.+-+++...-. -....++. .+++-.+.++   +..+|++..||.|.-|.-+.           ...
T Consensus       191 qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~  269 (319)
T KOG4714|consen  191 QQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISS  269 (319)
T ss_pred             cccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccc
Confidence            46789999999999999977621 11112222 2456666665   45899999999998875541           113


Q ss_pred             CCCCCc-eE-EEeCC----CCCceeEeeeeCCEEEEEeC-CeEEEEe
Q psy16019         69 WDLSKY-HT-VTLGL----PHHSVRSLAAVYNKVWCGYK-NKIHVVD  108 (121)
Q Consensus        69 wd~~~~-~~-i~lg~----~~~pV~~m~~v~~~lw~~~g-n~I~Vi~  108 (121)
                      |=-.+| +- |.+..    ...+|.++-+.+.+|-||.. .-|++.+
T Consensus       270 WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  270 WLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            422122 11 32221    24566777777899998877 5677653

>PF01011 PQQ: PQQ enzyme repeat family

Probab=90.86  E-value=0.74  Score=24.90  Aligned_cols=30  Identities=17%  Similarity=0.378  Sum_probs=25.3

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD   37 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~   37 (121)
                      +.|++|+.+|.|+.+++.+  =+.+++++...
T Consensus         1 ~~v~~~~~~g~l~AlD~~T--G~~~W~~~~~~   30 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKT--GKVLWKFQTGP   30 (38)
T ss_dssp             TEEEEETTTSEEEEEETTT--TSEEEEEESSS
T ss_pred             CEEEEeCCCCEEEEEECCC--CCEEEeeeCCC
Confidence            4689999999999999988  47788887764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG0295|consensus

Probab=90.70  E-value=7.7  Score=31.97  Aligned_cols=86  Identities=16%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGL   81 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg~   81 (121)
                      +.+-.|++|+.|-+|+...  -+|+-++. +-.=|-.+.++  +.+++....|++|-||        |+++. +..++..
T Consensus       305 ~~l~s~SrDktIk~wdv~t--g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw--------dl~~~~cmk~~~a  374 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVST--GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW--------DLKNLQCMKTLEA  374 (406)
T ss_pred             cEEEeecccceEEEEeccC--CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE--------EeccceeeeccCC
Confidence            4677899999999999888  48888885 44678888887  6688888889999998        55443 2334443


Q ss_pred             CCCceeEeeeeCCEEEEEeC
Q psy16019         82 PHHSVRSLAAVYNKVWCGYK  101 (121)
Q Consensus        82 ~~~pV~~m~~v~~~lw~~~g  101 (121)
                      ++.=|.|+.+..+..+.-.|
T Consensus       375 h~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  375 HEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             CcceeEEEecCCCCceEEec
Confidence            34556666666555544333

>KOG0771|consensus

Probab=90.65  E-value=4.4  Score=33.52  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEEEcCCCCCCCCCC----------c
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIFRRGPDGQWDLSK----------Y   74 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~~----------~   74 (121)
                      ..|=.|..||.+.|++-.+. ...+...++...|-||.+..+ +..|..+--..-||+-+.+-.|--..          -
T Consensus       157 s~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~c  235 (398)
T KOG0771|consen  157 SKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSC  235 (398)
T ss_pred             CEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhc
Confidence            46778889999999996663 223444567788999988755 35555544477777766542221111          0


Q ss_pred             -----------eE---------E-----EeCC------------CCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcE
Q psy16019         75 -----------HT---------V-----TLGL------------PHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        75 -----------~~---------i-----~lg~------------~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                                 .+         +     ++-+            -.+.|.||.+..  +-+..|.- +.|.|+++.+++.
T Consensus       236 RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~  315 (398)
T KOG0771|consen  236 RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR  315 (398)
T ss_pred             eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence                       00         0     0000            035899999884  55666666 7899999999987


Q ss_pred             EEE
Q psy16019        115 IRP  117 (121)
Q Consensus       115 ~~~  117 (121)
                      .+-
T Consensus       316 ~~~  318 (398)
T KOG0771|consen  316 LQY  318 (398)
T ss_pred             eEe
Confidence            653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=90.62  E-value=5.4  Score=34.30  Aligned_cols=90  Identities=13%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             EEEECCcc-cce-eeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee-
Q psy16019         18 FVHSAVSQ-WRR-CLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-   92 (121)
Q Consensus        18 ~v~~~~~~-~~~-~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v-   92 (121)
                      .+|....+ .++ .+.++.+|+.|.|-..+  +.++.+|+.||+|.+|+...+-      -+..+..-   ....++-+ 
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~------t~~~ka~~---~P~~iaWHp  309 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV------TLLAKAEF---IPTLIAWHP  309 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe------eeeeeecc---cceEEEEcC
Confidence            35555543 121 35677888888887754  6799999999999999543210      11122222   22344443 


Q ss_pred             -CCEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019         93 -YNKVWCGYK-NKIHVVDPKSLDVIR  116 (121)
Q Consensus        93 -~~~lw~~~g-n~I~Vi~~~tl~i~~  116 (121)
                       +.-+-+|+. +.+-+||..-.-+..
T Consensus       310 ~gai~~V~s~qGelQ~FD~ALspi~~  335 (545)
T PF11768_consen  310 DGAIFVVGSEQGELQCFDMALSPIKM  335 (545)
T ss_pred             CCcEEEEEcCCceEEEEEeecCccce
Confidence             234444444 678888876544443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=90.58  E-value=0.89  Score=39.38  Aligned_cols=97  Identities=14%  Similarity=0.173  Sum_probs=60.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeE-ecC-CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCc---eEEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLK-DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKY---HTVT   78 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~-~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~~i~   78 (121)
                      +..||+||....|.-|+..+. .-.+... -+| ++|..|.-. +|.+++|..+|.+-.         +.++-   ..+.
T Consensus       386 ~g~lWlgs~q~GLsrl~n~n~-~avlde~agl~ss~V~aived~dnsLWIGTs~Glvk~---------~pe~~~v~n~ln  455 (671)
T COG3292         386 RGRLWLGSMQNGLSRLDNKNE-WAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGLVKR---------DPESGRVLNLLN  455 (671)
T ss_pred             CCcEEEEecccchhhhccCCc-ccccccccCCcccceeeeeecCCCCEEEeccCCeEec---------Cccccchhcccc
Confidence            678999998866776765541 1223333 345 577676654 567999999997544         22232   2345


Q ss_pred             eCCCCCceeEeeee----CCEEEEEeCCeEEEEeCCC
Q psy16019         79 LGLPHHSVRSLAAV----YNKVWCGYKNKIHVVDPKS  111 (121)
Q Consensus        79 lg~~~~pV~~m~~v----~~~lw~~~gn~I~Vi~~~t  111 (121)
                      +++...|+..+...    +++||.|+|..|...++..
T Consensus       456 ~~~~~l~~s~~~~lg~~~~g~Lw~a~g~gva~~~sq~  492 (671)
T COG3292         456 PGSHGLDGSRVEQLGLGPDGRLWLAAGSGVAAWESQR  492 (671)
T ss_pred             cccCcCCcchhhhhccCCCCceEEEecceeeeecccc
Confidence            55543444333322    4899999999998777654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=90.56  E-value=5.3  Score=29.18  Aligned_cols=93  Identities=11%  Similarity=0.151  Sum_probs=59.9

Q ss_pred             eEEEEECCcccceeeeeEecC--CCEEEEEEeCC--EEEE--EecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEe
Q psy16019         16 SVFVHSAVSQWRRCLHSIQLK--DSVLNIVHVQG--RVVC--ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL   89 (121)
Q Consensus        16 ~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~~~--~v~v--~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m   89 (121)
                      ...+|-..+. ......+.+.  .+|.++...++  +..|  |-.++.+.+|        |.+...+.+++.  .++.++
T Consensus        38 ~~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly--------d~~~~~i~~~~~--~~~n~i  106 (194)
T PF08662_consen   38 EFELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY--------DVKGKKIFSFGT--QPRNTI  106 (194)
T ss_pred             eEEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE--------cCcccEeEeecC--CCceEE
Confidence            3444444331 1345566664  47999998753  3322  3356788888        666566677876  788877


Q ss_pred             eee--CCEEEEE-eCC---eEEEEeCCCCcEEEEEE
Q psy16019         90 AAV--YNKVWCG-YKN---KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        90 ~~v--~~~lw~~-~gn---~I~Vi~~~tl~i~~~~~  119 (121)
                      .-.  ++.|.+| .||   .+.+.|..+.+...+++
T Consensus       107 ~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~  142 (194)
T PF08662_consen  107 SWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE  142 (194)
T ss_pred             EECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc
Confidence            755  5666554 444   49999999988887765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.53  E-value=4.4  Score=33.80  Aligned_cols=68  Identities=18%  Similarity=0.181  Sum_probs=39.3

Q ss_pred             eeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCCCCceeEeeee--CCEEEEEeCCeEEE
Q psy16019         30 LHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPHHSVRSLAAV--YNKVWCGYKNKIHV  106 (121)
Q Consensus        30 l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~~~pV~~m~~v--~~~lw~~~gn~I~V  106 (121)
                      .+++++|-++..|..  +.++...+++.|.+|        |.+..+++ ++.-  .||+.+.-.  ++.+...+.+.|+|
T Consensus       102 ~k~i~~~~~~~~If~--G~LL~~~~~~~i~~y--------Dw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  102 VKSIKLPFSVEKIFG--GNLLGVKSSDFICFY--------DWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             T-----SS-EEEEE---SSSEEEEETTEEEEE---------TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             ceEEcCCcccceEEc--CcEEEEECCCCEEEE--------EhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCCeEEE
Confidence            346777777777777  667777777789998        67777675 5555  568888877  46788888899988


Q ss_pred             EeC
Q psy16019        107 VDP  109 (121)
Q Consensus       107 i~~  109 (121)
                      ++-
T Consensus       170 l~~  172 (443)
T PF04053_consen  170 LKY  172 (443)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=90.48  E-value=2.3  Score=36.96  Aligned_cols=108  Identities=20%  Similarity=0.320  Sum_probs=65.1

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEEEEEEe-CCEEEEEecCCcE-EEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVHV-QGRVVCALADGSV-AIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~~-~~~v~v~LanG~l-~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ..|..+|+||..| +++++... ++-.-+-..+|+ .|+.+... .+..++|..||.. ++-+|.   .-++..++   .
T Consensus       214 d~qg~LWVGTdqG-v~~~e~~G-~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq---~Lq~~~~~---~  285 (671)
T COG3292         214 DVQGRLWVGTDQG-VYLQEAEG-WRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQ---GLQIPLSK---M  285 (671)
T ss_pred             HhcCcEEEEeccc-eEEEchhh-ccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCC---Cccccccc---c
Confidence            3578899999966 67777655 232233346674 55555543 5689999999975 332221   11222221   2


Q ss_pred             CCCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019         80 GLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~~~  118 (121)
                      +.+...|.++... ++.||.+.-++|.=+......++..+
T Consensus       286 ~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~i  325 (671)
T COG3292         286 HLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVI  325 (671)
T ss_pred             CCccccccceeeccCCCEeeeccCceEEEecchhhheeee
Confidence            2222455566555 59999999987777766666665544

>KOG0270|consensus

Probab=90.42  E-value=7.7  Score=32.57  Aligned_cols=97  Identities=12%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE---eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~---~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      ..+..|+-||.+-++++++. ...-...+..+.|-.+..   ..+..|+++-||+|.-|.-.+.|    ++...++..+ 
T Consensus       300 ~~LLsGs~D~~V~l~D~R~~-~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd-  373 (463)
T KOG0270|consen  300 SVLLSGSYDGTVALKDCRDP-SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHD-  373 (463)
T ss_pred             eEEEeccccceEEeeeccCc-cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEecc-
Confidence            36788999999999999973 122334455666666664   46789999999999999554433    2335577777 


Q ss_pred             CCceeEeeeeC---CEEEEEeC-CeEEEEeC
Q psy16019         83 HHSVRSLAAVY---NKVWCGYK-NKIHVVDP  109 (121)
Q Consensus        83 ~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~  109 (121)
                       .||.+|.++.   +.|--+.. ..|.+.+.
T Consensus       374 -~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  374 -DEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             -CCcceEEecCCCCcceeeccccceEEEEee
Confidence             8999999884   55555555 34555443

>KOG0292|consensus

Probab=90.36  E-value=7.9  Score=35.52  Aligned_cols=59  Identities=14%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEecCCcEEEEEc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALADGSVAIFRR   63 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~LanG~l~Vy~r   63 (121)
                      ..|+.+.--+||+.|.||+...  |+++++++-. +.--+|..++ -.+|+|.-|+-+.||.-
T Consensus       260 p~q~lIlSnsEDksirVwDm~k--Rt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkl  320 (1202)
T KOG0292|consen  260 PHQDLILSNSEDKSIRVWDMTK--RTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKL  320 (1202)
T ss_pred             CccceeEecCCCccEEEEeccc--ccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEE
Confidence            3577888889999999999998  7889999765 7777777763 36999999999999943

>KOG2445|consensus

Probab=90.34  E-value=8.1  Score=31.29  Aligned_cols=58  Identities=24%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             CeEEEEecC-----CeEEEEECCcccceeeeeE---ecCCCEEEEEEeCC------EEEEEecCCcEEEEEcC
Q psy16019          6 PTMWLGSQN-----GSVFVHSAVSQWRRCLHSI---QLKDSVLNIVHVQG------RVVCALADGSVAIFRRG   64 (121)
Q Consensus         6 ~tvwiGt~~-----g~I~v~~~~~~~~~~l~~~---~l~~~V~~i~~~~~------~v~v~LanG~l~Vy~r~   64 (121)
                      +.+-+|.++     ++.+||.-.++.+|.++.-   .++++|.+|.+.++      .+-||.-|| |-||.-.
T Consensus       185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK  256 (361)
T ss_pred             ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence            566778876     5788888777766654433   45589999998754      577888899 9999765

>KOG2114|consensus

Probab=90.33  E-value=9.9  Score=34.48  Aligned_cols=108  Identities=13%  Similarity=0.105  Sum_probs=77.9

Q ss_pred             CCCeEEEEecCCeEEEEE---CCcccceeeeeEecC--CCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          4 VLPTMWLGSQNGSVFVHS---AVSQWRRCLHSIQLK--DSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~---~~~~~~~~l~~~~l~--~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      .-.+|-+|=-+|.|+.|.   +++  |-....+.++  +|||-+.+..+   .+||+..+ .|..|.-.  |    .+|.
T Consensus       136 ~l~~Iv~Gf~nG~V~~~~GDi~RD--rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~V~~y~l~--g----r~p~  206 (933)
T KOG2114|consen  136 DLKTIVCGFTNGLVICYKGDILRD--RGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-QVMLYSLS--G----RTPS  206 (933)
T ss_pred             cccEEEEEecCcEEEEEcCcchhc--cccceeeeccCCCCceeeEEecCCceeEEEEecc-eeEEEEec--C----CCcc
Confidence            456899999999999986   333  2234445555  79999988643   26999988 67888554  1    2244


Q ss_pred             EEEeCCCCCceeEeeeeC--CEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019         76 TVTLGLPHHSVRSLAAVY--NKVWCGYKNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v~--~~lw~~~gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ...+..-..|+.|-....  .++-||-++.++.+++...++.-.|++
T Consensus       207 ~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~  253 (933)
T KOG2114|consen  207 LKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEV  253 (933)
T ss_pred             eeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecC
Confidence            444555567899988774  558888899999999998887777763

>KOG0272|consensus

Probab=90.17  E-value=5  Score=33.51  Aligned_cols=111  Identities=22%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCC-----------
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDG-----------   67 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g-----------   67 (121)
                      ...-+-.|+=+|..-||+..+.  ..++.+. +.+.|.++.+++.    .+-.|.+||++.+|.-..+.           
T Consensus       186 ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R  263 (459)
T KOG0272|consen  186 DSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR  263 (459)
T ss_pred             CCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh
Confidence            4456777888999999998874  5566664 5578888888754    78889999999999776511           


Q ss_pred             -----------------------CCCCCCceEE--EeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEE
Q psy16019         68 -----------------------QWDLSKYHTV--TLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        68 -----------------------~wd~~~~~~i--~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~  117 (121)
                                             .||+.....+  .=|. ..+|-+++.. .+.|.+..|  +-=.|-|..|+.-+-.
T Consensus       264 Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~  340 (459)
T KOG0272|consen  264 VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF  340 (459)
T ss_pred             heeeeecCCCceeeecccccchhhcccccchhhHhhccc-ccccceeEecCCCceeeccCccchhheeecccCcEEEE
Confidence                                   3565554332  2233 3889999888 577888777  3445666666654433

>KOG0285|consensus

Probab=90.16  E-value=7.1  Score=32.33  Aligned_cols=106  Identities=11%  Similarity=0.126  Sum_probs=75.7

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKY-HTV   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i   77 (121)
                      +.-.|.|+-+.+|+.|-.|+++.  +|.+.... +=++|.|+..+  .+.++.|..|-++-||        |...- .+.
T Consensus       202 S~rHpYlFs~gedk~VKCwDLe~--nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW--------DiRtr~~V~  271 (460)
T KOG0285|consen  202 SKRHPYLFSAGEDKQVKCWDLEY--NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW--------DIRTRASVH  271 (460)
T ss_pred             cccCceEEEecCCCeeEEEechh--hhhHHHhccccceeEEEeccccceeEEecCCcceEEEe--------eecccceEE
Confidence            45678999999999999999999  56665553 33789999888  6789999999999886        66543 333


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      .+.--..||.+....  +.++.-|+- ..|..-|...++-...
T Consensus       272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t  314 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT  314 (460)
T ss_pred             EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe
Confidence            443223677776554  667776666 4688777776665443

>KOG1517|consensus

Probab=90.12  E-value=5.7  Score=37.01  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeE--ecCC--CEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCce--
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLKD--SVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYH--   75 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~~--~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~--   75 (121)
                      .+.+-.|-.||++-+|+-.-..++++-..  .+.+  +|.-+....   +.++.|..||.|-++        |+..+.  
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~--------DlR~~~~e 1292 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL--------DLRMSSKE 1292 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE--------ecccCccc
Confidence            46788999999999999666544433222  2333  255554443   369999999999998        444321  


Q ss_pred             -EEEeCCC---CCceeEeeeeC--CEEEEEeCCeEEEEeCCC
Q psy16019         76 -TVTLGLP---HHSVRSLAAVY--NKVWCGYKNKIHVVDPKS  111 (121)
Q Consensus        76 -~i~lg~~---~~pV~~m~~v~--~~lw~~~gn~I~Vi~~~t  111 (121)
                       ++++-.+   ...+++|.+++  ..+.+|.+..|.|++...
T Consensus      1293 ~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1293 TFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred             ccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence             1222221   12488999986  667777777899987754

>KOG1063|consensus

Probab=90.12  E-value=3  Score=36.79  Aligned_cols=99  Identities=19%  Similarity=0.266  Sum_probs=59.8

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC-CC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP-HH   84 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~-~~   84 (121)
                      .|..|..||.+.+|.+.+.--.++.++++. ..+.|+.-....+++..+||++.+|+.+.+.   +-=...+.++.. -.
T Consensus        71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e---~~~~~~~rf~~k~~i  147 (764)
T KOG1063|consen   71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDE---VFLLAVLRFEIKEAI  147 (764)
T ss_pred             eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCc---eeeehheehhhhhHh
Confidence            588899999999999886434467777763 5666776666566666799999998653221   000012333321 01


Q ss_pred             ceeEeeee--CCEEEEEeCCeEEEEeC
Q psy16019         85 SVRSLAAV--YNKVWCGYKNKIHVVDP  109 (121)
Q Consensus        85 pV~~m~~v--~~~lw~~~gn~I~Vi~~  109 (121)
                      | .|++..  ++..-.+||+..++++.
T Consensus       148 p-LcL~~~~~~~~~lla~Ggs~~~v~~  173 (764)
T KOG1063|consen  148 P-LCLAALKNNKTFLLACGGSKFVVDL  173 (764)
T ss_pred             h-HHHhhhccCCcEEEEecCcceEEEE
Confidence            2 244444  57777788854444443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=90.11  E-value=9.9  Score=31.61  Aligned_cols=97  Identities=8%  Similarity=0.129  Sum_probs=56.5

Q ss_pred             CCCeEEEEecCCeEEEEECCcccce-eeeeE-ecCCCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRR-CLHSI-QLKDSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~-~l~~~-~l~~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      ....+.+++++|.||.......... .+..+ ++...-.++.+.++   .+|+|...|.=.+|+-      ...++.++ 
T Consensus       221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~------~~~~l~~~~  294 (504)
T PF10433_consen  221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQI------SLSNLEVLD  294 (504)
T ss_dssp             TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEE------ESESEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEE------eCCCcEEEE
Confidence            3567999999999998776553221 23333 21334456666644   8999998877444322      23344444 


Q ss_pred             EeCCCCCceeEeeeeC------C------EEEEEeC----CeEEEE
Q psy16019         78 TLGLPHHSVRSLAAVY------N------KVWCGYK----NKIHVV  107 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~------~------~lw~~~g----n~I~Vi  107 (121)
                      ++-. -.||.-|.+..      .      +||++||    ..+.++
T Consensus       295 ~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~l  339 (504)
T PF10433_consen  295 SLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRIL  339 (504)
T ss_dssp             EE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEE
T ss_pred             eccC-cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEE
Confidence            2322 37999998873      2      8999998    357776

...

>KOG0650|consensus

Probab=89.89  E-value=0.39  Score=41.67  Aligned_cols=74  Identities=18%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC-EEEEEecC-CcEEEEEcCCCCCCCC-CCceEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG-RVVCALAD-GSVAIFRRGPDGQWDL-SKYHTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~-~v~v~Lan-G~l~Vy~r~~~g~wd~-~~~~~i~   78 (121)
                      ..++.+.+|+.++++..|++.-+ .|.-++++++ ++|.+..++.. -+|+..+| |++.||.-.-..  |+ ++|-++.
T Consensus       617 p~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~--Dl~qnpliVP  693 (733)
T KOG0650|consen  617 PNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN--DLLQNPLIVP  693 (733)
T ss_pred             CCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh--hhhcCCceEe
Confidence            45678999999999999997764 3566777665 89999998864 36666666 999999765332  33 5665544


Q ss_pred             e
Q psy16019         79 L   79 (121)
Q Consensus        79 l   79 (121)
                      +
T Consensus       694 l  694 (733)
T KOG0650|consen  694 L  694 (733)
T ss_pred             e
Confidence            4

>KOG0288|consensus

Probab=89.74  E-value=9.6  Score=31.86  Aligned_cols=103  Identities=11%  Similarity=0.039  Sum_probs=72.2

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE-eCCC-
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT-LGLP-   82 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~-lg~~-   82 (121)
                      ++--|.-|++|-.|+..+  ..+..++.+.+.|+++--  .+..|.+..-|.++-|+        |+....+.. +..+ 
T Consensus       314 ~~~SgH~DkkvRfwD~Rs--~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~vi--------DlRt~eI~~~~sA~g  383 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRS--ADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVI--------DLRTKEIRQTFSAEG  383 (459)
T ss_pred             eeeecccccceEEEeccC--CceeeEeecCcceeeEeeccCCeEEeeecCCCceeee--------ecccccEEEEeeccc
Confidence            455577789999999887  467788888888877664  46689999999999999        565554431 1110 


Q ss_pred             ---CCcee--EeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 ---HHSVR--SLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ---~~pV~--~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                         ..-.+  ++.+-+.-+.+|+. ..|||-+..|.++|+.+.
T Consensus       384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~  426 (459)
T KOG0288|consen  384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS  426 (459)
T ss_pred             cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence               01122  33344566677766 589999999999999864

>KOG1310|consensus

Probab=89.65  E-value=2.8  Score=36.35  Aligned_cols=105  Identities=17%  Similarity=0.264  Sum_probs=70.8

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCC--CCCCCCCCc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHV----QGRVVCALADGSVAIFRRGP--DGQWDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~--~g~wd~~~~   74 (121)
                      +.+..+--|++|-+|.||+.-+  +|.+++|.  +.+.|||.++.    +..|..|-+|-.|-+|.-..  +|.-| ..+
T Consensus        60 ~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d-~~~  136 (758)
T KOG1310|consen   60 ADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD-HGM  136 (758)
T ss_pred             CCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc-cCc
Confidence            3455677799999999999886  78899985  45899999986    34678888899999997652  22222 111


Q ss_pred             eE--EEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCC
Q psy16019         75 HT--VTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        75 ~~--i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~  110 (121)
                      ..  ...+.....|+.|+...   +.+|-+.. ..|.=.|..
T Consensus       137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen  137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence            11  12222236777777663   67888776 456655543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.52  E-value=7.1  Score=32.44  Aligned_cols=105  Identities=13%  Similarity=0.053  Sum_probs=60.9

Q ss_pred             CCCCCCeEEEEecCCeEEEEECC--------cccceeeeeEecCC----CEEEEEEe-------------CCEEEEEecC
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAV--------SQWRRCLHSIQLKD----SVLNIVHV-------------QGRVVCALAD   55 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~--------~~~~~~l~~~~l~~----~V~~i~~~-------------~~~v~v~Lan   55 (121)
                      +++....|-+|-++.-++.-...        ++..+..+.-.+.+    .|+++.+.             ...|-||+.+
T Consensus         9 ls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ss   88 (415)
T PF14655_consen    9 LSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGTSS   88 (415)
T ss_pred             ecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEecc
Confidence            45677788888776555542111        11112223333432    56665542             3469999999


Q ss_pred             CcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeeeC-----------CEEEEEeCCeEEEEeCCCCc
Q psy16019         56 GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-----------NKVWCGYKNKIHVVDPKSLD  113 (121)
Q Consensus        56 G~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~-----------~~lw~~~gn~I~Vi~~~tl~  113 (121)
                      |.|.+|..+..-.   -.   =.+.+  .||..|-.-.           .+|+.-+.+.|.+||..++.
T Consensus        89 G~vrfyte~G~LL---~~---Q~~h~--~pV~~ik~~~~~~~~~~~~~~eel~ily~~~v~~Idg~sL~  149 (415)
T PF14655_consen   89 GYVRFYTENGVLL---LS---QLLHE--EPVLKIKCRSTKIPRHPGDSSEELSILYPSAVVIIDGFSLF  149 (415)
T ss_pred             cEEEEEeccchHH---HH---HhcCc--cceEEEEecccCCCCCCcccccEEEEEECCEEEEEecHHHH
Confidence            9999996542210   00   02222  4444443331           88999999999999987653

>KOG1240|consensus

Probab=89.37  E-value=4.4  Score=38.06  Aligned_cols=103  Identities=13%  Similarity=0.087  Sum_probs=70.6

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCce-EEEeC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYH-TVTLG   80 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-~i~lg   80 (121)
                      -+-.+|+.++|..|+...  ....++++.+   +.|++|...  .+-+..|...|.+..|        |+.=.- +.+-.
T Consensus      1165 ~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW--------DLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRM--RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW--------DLRFRVPILSWE 1234 (1431)
T ss_pred             eEEEEEeccceEEecchh--hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEE--------EeecCceeeccc
Confidence            678899999999999887  4567777664   799998876  4568888899999997        432111 11222


Q ss_pred             CC-CCceeEeeeeC------CEEEEEe-C-CeEEEEeCCCCcEEEEEE
Q psy16019         81 LP-HHSVRSLAAVY------NKVWCGY-K-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ~~-~~pV~~m~~v~------~~lw~~~-g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .| ..|++.|....      -.+-+|. + |-|-+-|++++.-+..|-
T Consensus      1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred             CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence            23 46777766652      2344455 4 678888888887766653

>KOG0301|consensus

Probab=89.33  E-value=6  Score=34.96  Aligned_cols=90  Identities=18%  Similarity=0.258  Sum_probs=57.5

Q ss_pred             EEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEE-EeCC-EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCc
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIV-HVQG-RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHS   85 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~-~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~p   85 (121)
                      .-..+||.|..|+...   .++.++ -++.=|.+|. ..++ -+..+..||++-+|...       .--..|++  |..+
T Consensus       194 lScsNDg~Ir~w~~~g---e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-------e~~q~I~l--Ptts  261 (745)
T KOG0301|consen  194 LSCSNDGSIRLWDLDG---EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-------ECVQVITL--PTTS  261 (745)
T ss_pred             EeecCCceEEEEeccC---ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-------ceEEEEec--Cccc
Confidence            3345788888888755   555554 4556777777 3334 45555678999998322       12244555  4366


Q ss_pred             eeEeeee-CCEEEEEeC-CeEEEEeCC
Q psy16019         86 VRSLAAV-YNKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        86 V~~m~~v-~~~lw~~~g-n~I~Vi~~~  110 (121)
                      |=+.... ++.+.+||+ +.|+|+...
T Consensus       262 iWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  262 IWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eEEEEEeeCCCEEEeccCceEEEEEec
Confidence            6665555 788888888 689998543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=89.33  E-value=4.6  Score=33.18  Aligned_cols=79  Identities=20%  Similarity=0.295  Sum_probs=49.4

Q ss_pred             EEEEEEe--CCEEEEEecCCcEEEEEcCCCCCC---------CCC---------CceEEEeCC-----------------
Q psy16019         39 VLNIVHV--QGRVVCALADGSVAIFRRGPDGQW---------DLS---------KYHTVTLGL-----------------   81 (121)
Q Consensus        39 V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~w---------d~~---------~~~~i~lg~-----------------   81 (121)
                      |+.+-+.  -..+.||+.+|.|+||+......-         |..         +-.++.+.+                 
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            5555554  358999999999999987432111         100         111222221                 


Q ss_pred             -CCCceeEeeeeC-CEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         82 -PHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        82 -~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                       -+.||+++...+ +.+.+||. ..+.|||.+.=.+...
T Consensus        84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEee
Confidence             137999999986 99999997 6899999988777665

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=89.20  E-value=0.65  Score=25.24  Aligned_cols=20  Identities=15%  Similarity=0.439  Sum_probs=16.7

Q ss_pred             CCCeEEEEecCCeEEEEECC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAV   23 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~   23 (121)
                      ..+.|++|+++|.++.+++.
T Consensus        20 ~~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT
T ss_pred             ECCEEEEEcCCCEEEEEeCC
Confidence            46789999999999999975

>KOG0639|consensus

Probab=88.96  E-value=0.79  Score=39.26  Aligned_cols=60  Identities=10%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~   64 (121)
                      -....+|.|.-|.++.-|++.+  .+.++.-+..+.|+++-|+  ++.|.||.+|+.+-|.+-.
T Consensus       561 ~dGtklWTGGlDntvRcWDlre--grqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  561 KDGTKLWTGGLDNTVRCWDLRE--GRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             CCCceeecCCCccceeehhhhh--hhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence            3456899999999999999988  4556666677889999997  5579999999999998543

>smart00564 PQQ beta-propeller repeat

Probab=88.62  E-value=1.1  Score=22.81  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             EEeCCEEEEEecCCcEEEEEcCC
Q psy16019         43 VHVQGRVVCALADGSVAIFRRGP   65 (121)
Q Consensus        43 ~~~~~~v~v~LanG~l~Vy~r~~   65 (121)
                      ...++.+|++..||.|..++...
T Consensus         3 ~~~~~~v~~~~~~g~l~a~d~~~   25 (33)
T smart00564        3 VLSDGTVYVGSTDGTLYALDAKT   25 (33)
T ss_pred             EEECCEEEEEcCCCEEEEEEccc
Confidence            34566899999999999997754

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG3611|consensus

Probab=88.31  E-value=1.9  Score=38.34  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             CCeEEEEecCCeEE-EEECCcc-cc-----eeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEE
Q psy16019          5 LPTMWLGSQNGSVF-VHSAVSQ-WR-----RCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAI   60 (121)
Q Consensus         5 ~~tvwiGt~~g~I~-v~~~~~~-~~-----~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~V   60 (121)
                      ..-|++||++|.|+ +.+.... .+     ++++-++.+.+|..+...  .+++|||...|.+-|
T Consensus       425 ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qv  489 (737)
T KOG3611|consen  425 YDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQV  489 (737)
T ss_pred             EEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEEEe
Confidence            34699999999998 4554441 11     234444556788887754  667999999998654

>KOG2444|consensus

Probab=88.20  E-value=1.3  Score=34.07  Aligned_cols=63  Identities=22%  Similarity=0.335  Sum_probs=46.2

Q ss_pred             EeCCEEEEEecCCcEEEEEcCCCCCCCCCCce--EEEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcE
Q psy16019         44 HVQGRVVCALADGSVAIFRRGPDGQWDLSKYH--TVTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        44 ~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~--~i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      --...+++|..+|.+.+|.      |.+...+  ....+.  .||-||.++.   +..|++++ ++|+-.+..-.+.
T Consensus        68 ~~~~~~~vG~~dg~v~~~n------~n~~g~~~d~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~  136 (238)
T KOG2444|consen   68 TASAKLMVGTSDGAVYVFN------WNLEGAHSDRVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV  136 (238)
T ss_pred             ccCceEEeecccceEEEec------CCccchHHHhhhccc--ccceeccccccccceeEEeccCCceeeeccccCce
Confidence            3466899999999999994      3333332  245666  8999999995   36899999 6898887765443

>smart00564 PQQ beta-propeller repeat

Probab=88.16  E-value=1.2  Score=22.67  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeee
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHS   32 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~   32 (121)
                      .+.+++|+.+|.|+.++..+  -+.+++
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~--G~~~W~   31 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKT--GEILWT   31 (33)
T ss_pred             CCEEEEEcCCCEEEEEEccc--CcEEEE
Confidence            35899999999999999876  355554

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=88.16  E-value=22  Score=32.94  Aligned_cols=66  Identities=14%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             EEEEe-CCEEEEEec-CCcEEEEEcCCCCCCCCCCceEEEe---CCC------------CCceeEeeee-CCEEEEEeC-
Q psy16019         41 NIVHV-QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTL---GLP------------HHSVRSLAAV-YNKVWCGYK-  101 (121)
Q Consensus        41 ~i~~~-~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~l---g~~------------~~pV~~m~~v-~~~lw~~~g-  101 (121)
                      .+.+. ++.+||+.. |+.|.+|+.        +...+.++   |.+            ..| ..|++. +++||++.. 
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~--------~tg~v~tiaG~G~~G~~dG~~~~a~l~~P-~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDP--------ATKRVTTLAGTGKAGFKDGKALKAQLSEP-AGLALGENGRLFVADTN  878 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEEC--------CCCeEEEEeccCCcCCCCCcccccccCCc-eEEEEeCCCCEEEEECC
Confidence            44443 456888765 678888843        22222211   110            123 345554 467999886 


Q ss_pred             -CeEEEEeCCCCcEE
Q psy16019        102 -NKIHVVDPKSLDVI  115 (121)
Q Consensus       102 -n~I~Vi~~~tl~i~  115 (121)
                       |+|.++|.++.+..
T Consensus       879 Nn~Irvid~~~~~~~  893 (1057)
T PLN02919        879 NSLIRYLDLNKGEAA  893 (1057)
T ss_pred             CCEEEEEECCCCccc
Confidence             68999999998763

>KOG1538|consensus

Probab=87.97  E-value=2.4  Score=37.69  Aligned_cols=61  Identities=21%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEe-CCEEEEE-ecCCcEEEEEcCCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHV-QGRVVCA-LADGSVAIFRRGPDG   67 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~-~~~v~v~-LanG~l~Vy~r~~~g   67 (121)
                      .+..+.++.. .++++|+.++.  ..+++++- .|.|.|..|. ++..|++ .||-.+.+|...-+|
T Consensus        23 DGsqL~lAAg-~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG   86 (1081)
T KOG1538|consen   23 DGTQLILAAG-SRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG   86 (1081)
T ss_pred             CCceEEEecC-CEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc
Confidence            3445555554 58999999983  56788864 5999999986 5577775 556677887665555

>KOG0284|consensus

Probab=87.64  E-value=1.5  Score=36.55  Aligned_cols=102  Identities=18%  Similarity=0.180  Sum_probs=64.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cC-CCEEEEEEe-CCEEEE-EecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LK-DSVLNIVHV-QGRVVC-ALADGSVAIFRRGPDGQWDLSKYHT-VT   78 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~-~~V~~i~~~-~~~v~v-~LanG~l~Vy~r~~~g~wd~~~~~~-i~   78 (121)
                      ....|--|..+|.|-+|...-   ..++.++ .. .+|.|+.+. .+..|+ +..||+|-|+        |+..++- ..
T Consensus       149 ~g~wmiSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiW--------df~~~kee~v  217 (464)
T KOG0284|consen  149 NGTWMISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIW--------DFRMPKEERV  217 (464)
T ss_pred             CCCEEEEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEE--------eccCCchhhe
Confidence            344555566777787887665   3455553 33 689998886 334555 4556889886        6655533 23


Q ss_pred             eCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019         79 LGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIR  116 (121)
Q Consensus        79 lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~  116 (121)
                      |.-+..=|+|+.-..  +.|.-|.. |-|.+-|++|++-.-
T Consensus       218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~  258 (464)
T KOG0284|consen  218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA  258 (464)
T ss_pred             eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence            344456788877764  44444555 679999999876543

>KOG0290|consensus

Probab=87.63  E-value=6.9  Score=31.56  Aligned_cols=95  Identities=20%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             EEEec--CCeEEEEECCcccc-eee-eeEecCCCEEEEEEeC--CEEEEE-ecCCcEEEEEcCCCCCCCCCCc--eEEEe
Q psy16019          9 WLGSQ--NGSVFVHSAVSQWR-RCL-HSIQLKDSVLNIVHVQ--GRVVCA-LADGSVAIFRRGPDGQWDLSKY--HTVTL   79 (121)
Q Consensus         9 wiGt~--~g~I~v~~~~~~~~-~~l-~~~~l~~~V~~i~~~~--~~v~v~-LanG~l~Vy~r~~~g~wd~~~~--~~i~l   79 (121)
                      .+||.  |-.--||+.+.... ... +-+.+...|++|.+..  -.+||+ .|||++-+|        |+.+.  .+|--
T Consensus       165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF--------DLR~leHSTIIY  236 (364)
T KOG0290|consen  165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF--------DLRSLEHSTIIY  236 (364)
T ss_pred             eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEE--------EecccccceEEe
Confidence            34443  44556777665311 112 2245567999999987  579987 579999999        44432  34444


Q ss_pred             CCC--CCceeEeeeeC-----CEEEEEeCCeEEEEeCCC
Q psy16019         80 GLP--HHSVRSLAAVY-----NKVWCGYKNKIHVVDPKS  111 (121)
Q Consensus        80 g~~--~~pV~~m~~v~-----~~lw~~~gn~I~Vi~~~t  111 (121)
                      .+|  ..|.-.|..+.     -...+..+++|.|+|.+.
T Consensus       237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence            443  46766666653     123445668888888653

>KOG2079|consensus

Probab=87.16  E-value=1.6  Score=40.21  Aligned_cols=85  Identities=15%  Similarity=0.271  Sum_probs=60.0

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCC---ceEEEeCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSK---YHTVTLGL   81 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~---~~~i~lg~   81 (121)
                      .+-+||..|.+..++...+.+.-.+--....+|+|+.+.  +..+.+|+++|.|.|+        |...   .+.|..+.
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~--------D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVW--------DMHRAKILKVITEHG  172 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEE--------EccCCcceeeeeecC
Confidence            467899999999888877644323333455688888876  4589999999999997        5544   35566665


Q ss_pred             CCCceeEeeeeC-----CEEEEEeC
Q psy16019         82 PHHSVRSLAAVY-----NKVWCGYK  101 (121)
Q Consensus        82 ~~~pV~~m~~v~-----~~lw~~~g  101 (121)
                        .|...+..+.     ..+.++..
T Consensus       173 --ap~t~vi~v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  173 --APVTGVIFVGRTSQNSKLLTSDT  195 (1206)
T ss_pred             --CccceEEEEEEeCCCcEEEEccC
Confidence              7888877773     33555555

>KOG0299|consensus

Probab=86.79  E-value=18  Score=30.56  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIFR   62 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy~   62 (121)
                      +-+..+.+|..|.+..+|...+..+  +--....+++-|.++.++ ....|..||.|+.|.
T Consensus       296 ~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  296 SRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS  354 (479)
T ss_pred             cccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence            3456788999999999999876311  111123469999998755 566677889999984

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=86.28  E-value=12  Score=30.47  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=59.6

Q ss_pred             eEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC-CCceeEeee-e-
Q psy16019         16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP-HHSVRSLAA-V-   92 (121)
Q Consensus        16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~-~~pV~~m~~-v-   92 (121)
                      ++.|.++..  +|.+..+.+|+.++-.=.-+...+.-++||+++-+.-+.+|.--   .+.=++-++ ..|+-.-.. . 
T Consensus       119 SVtVVDl~~--~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~  193 (342)
T PF06433_consen  119 SVTVVDLAA--KKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSR  193 (342)
T ss_dssp             EEEEEETTT--TEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEET
T ss_pred             eEEEEECCC--CceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccceEC
Confidence            334444444  67788999999876666677888899999999999998887532   111122222 355443322 2 


Q ss_pred             -CC-EEEEEeCCeEEEEeCCCCc
Q psy16019         93 -YN-KVWCGYKNKIHVVDPKSLD  113 (121)
Q Consensus        93 -~~-~lw~~~gn~I~Vi~~~tl~  113 (121)
                       ++ -+|.++.++|+-+|...-+
T Consensus       194 ~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  194 DGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             TTTEEEEEBTTSEEEEEEETTSS
T ss_pred             CCCeEEEEecCCEEEEEeccCCc
Confidence             34 4578999999998765544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=85.82  E-value=3.6  Score=36.67  Aligned_cols=53  Identities=9%  Similarity=0.156  Sum_probs=40.0

Q ss_pred             CCCCCeEEE-EecCCeEEEEECCcccceeeeeEecCCCEEE--EEEe--CCEEEEEecCC
Q psy16019          2 TSVLPTMWL-GSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVHV--QGRVVCALADG   56 (121)
Q Consensus         2 ~~~~~tvwi-Gt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~~--~~~v~v~LanG   56 (121)
                      .+..+.+.+ ||+||.+..|+..+  =|.+++.++|+.+..  +.|.  +++=||+.+-|
T Consensus       688 ~TagglvF~~gt~d~~l~A~D~~t--Gk~lW~~~l~~~~~a~P~tY~~~~GkQYVvi~aG  745 (764)
T TIGR03074       688 ATAGGLVFIGATQDNYLRAYDLST--GKELWKARLPAGGQATPMTYMGKDGKQYVVIVAG  745 (764)
T ss_pred             EEcCCEEEEEeCCCCEEEEEECCC--CceeeEeeCCCCcccCCEEEEecCCEEEEEEEeC
Confidence            456788998 89999999999877  488999999975544  4555  66666666554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.74  E-value=4.1  Score=30.64  Aligned_cols=60  Identities=8%  Similarity=0.149  Sum_probs=41.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceee-ee------Ee-------cC-CCEEEEEE-eCCEEEEEecCCcEEEEEcC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCL-HS------IQ-------LK-DSVLNIVH-VQGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l-~~------~~-------l~-~~V~~i~~-~~~~v~v~LanG~l~Vy~r~   64 (121)
                      +.++.+-+=|++|.+||||...  +++. ..      +.       .+ ..|..+.. ..+..+|.++||...+|+.+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~--~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKK--GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCC--CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            3456678889999999999888  3432 21      11       12 34444443 46789999999999988664

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0300|consensus

Probab=85.66  E-value=16  Score=30.00  Aligned_cols=98  Identities=16%  Similarity=0.189  Sum_probs=61.2

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCc----eEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKY----HTV   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~----~~i   77 (121)
                      .|..|...+.|-...+|+..+.+ +.+.-|+ +++.|++..+. +++|..|..|-++-||        |+.+.    .+|
T Consensus       325 tQrLVvTsSrDtTFRLWDFReaI-~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvW--------dLrNMRsplATI  395 (481)
T KOG0300|consen  325 TQRLVVTSSRDTTFRLWDFREAI-QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVW--------DLRNMRSPLATI  395 (481)
T ss_pred             cceEEEEeccCceeEeccchhhc-ceeeeecccccceeEEEEecCCceeecCCCceEEEe--------eeccccCcceee
Confidence            34556666666666677666532 2344444 55899998876 6688888888999996        66655    335


Q ss_pred             EeCCCCCceeEeeeeCCE--EEEEeCC-eEEEEeCCCCc
Q psy16019         78 TLGLPHHSVRSLAAVYNK--VWCGYKN-KIHVVDPKSLD  113 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~~~--lw~~~gn-~I~Vi~~~tl~  113 (121)
                      ....   |+..+.+..+.  +..--.| +|.+||...-.
T Consensus       396 RtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  396 RTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             ecCC---ccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            5444   77777666332  3333334 57788775543

>KOG1645|consensus

Probab=85.62  E-value=3.7  Score=34.22  Aligned_cols=94  Identities=19%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeE--ecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCC-----CCceE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDL-----SKYHT   76 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~-----~~~~~   76 (121)
                      .+-++.|-++|.++||++..+.. .+..+  ++. .+|..|.|....  ..-..|.++++....-..|+.     ..|++
T Consensus       248 ~h~IYaGl~nG~VlvyD~R~~~~-~~~e~~a~~t~~pv~~i~~~~~n--~~f~~gglLv~~lt~l~f~ei~~s~~~~p~v  324 (463)
T KOG1645|consen  248 RHVIYAGLQNGMVLVYDMRQPEG-PLMELVANVTINPVHKIAPVQPN--KIFTSGGLLVFALTVLQFYEIVFSAECLPCV  324 (463)
T ss_pred             cceeEEeccCceEEEEEccCCCc-hHhhhhhhhccCcceeecccCcc--ccccccceEEeeehhhhhhhhhccccCCCcc
Confidence            45789999999999999888532 22222  233 578788887544  555567777776654444533     12344


Q ss_pred             EEeCCCCCceeEeeeeC--CEEEEEeCC
Q psy16019         77 VTLGLPHHSVRSLAAVY--NKVWCGYKN  102 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~--~~lw~~~gn  102 (121)
                      +.++.| .+..+|...+  +++-+.++.
T Consensus       325 lele~p-G~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  325 LELEPP-GICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             cccCCC-cceeeeeecCccceEEEEecC
Confidence            566653 5655666655  666666663

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=85.55  E-value=25  Score=31.10  Aligned_cols=89  Identities=18%  Similarity=0.292  Sum_probs=59.3

Q ss_pred             eEecCCCEEEEEEe--CCEEEEEecCCcEEEEEc---------CCC----C--C-----CCCC-----------------
Q psy16019         32 SIQLKDSVLNIVHV--QGRVVCALADGSVAIFRR---------GPD----G--Q-----WDLS-----------------   72 (121)
Q Consensus        32 ~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r---------~~~----g--~-----wd~~-----------------   72 (121)
                      .+++.+.|..|+..  +..+||-+.||.+-+|+.         .-.    +  .     -|.+                 
T Consensus       125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~  204 (670)
T PF10395_consen  125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS  204 (670)
T ss_pred             EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence            45667788888887  678999999999999998         110    0  0     0001                 


Q ss_pred             --CceEEEeCCCCCceeEe---------------eeeCCEEEEEeCCeEEEEeCCCCcEEEEEEe
Q psy16019         73 --KYHTVTLGLPHHSVRSL---------------AAVYNKVWCGYKNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        73 --~~~~i~lg~~~~pV~~m---------------~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~~~  120 (121)
                        .++++.++....|+--+               +...+.||+=..+.|.+++..++++++++++
T Consensus       205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l  269 (670)
T PF10395_consen  205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISL  269 (670)
T ss_pred             cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEe
Confidence              11334453322333222               2234888888888999999999999999876

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=85.02  E-value=26  Score=30.79  Aligned_cols=92  Identities=13%  Similarity=0.212  Sum_probs=53.8

Q ss_pred             eEEEEECCcccceeeeeEecCCCEEEEEEe---CCE-EEEEecCCcEEEEEcCC-----CC-CCCCCCceEEEeCCC-CC
Q psy16019         16 SVFVHSAVSQWRRCLHSIQLKDSVLNIVHV---QGR-VVCALADGSVAIFRRGP-----DG-QWDLSKYHTVTLGLP-HH   84 (121)
Q Consensus        16 ~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~---~~~-v~v~LanG~l~Vy~r~~-----~g-~wd~~~~~~i~lg~~-~~   84 (121)
                      ++.||++.+..-+-..++...+.|.+|-..   +++ +.+-.=...|.+|....     .+ .|-  ..+.|.+.+- ++
T Consensus        52 ~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~--~i~~i~i~~~T~h  129 (631)
T PF12234_consen   52 ELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA--PIRKIDISSHTPH  129 (631)
T ss_pred             EEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc--eeEEEEeecCCCC
Confidence            566777665322223344445788777754   222 22222334677776532     11 122  2244555542 47


Q ss_pred             ceeEeeee-CCEEEEEeCCeEEEEeC
Q psy16019         85 SVRSLAAV-YNKVWCGYKNKIHVVDP  109 (121)
Q Consensus        85 pV~~m~~v-~~~lw~~~gn~I~Vi~~  109 (121)
                      ||....-. ++.+-+|+||+++|+|-
T Consensus       130 ~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  130 PIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             CccceeEecCCeEEEEeCCEEEEECC
Confidence            88887766 58999999999999965

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2063|consensus

Probab=84.96  E-value=0.35  Score=43.51  Aligned_cols=79  Identities=11%  Similarity=0.083  Sum_probs=58.5

Q ss_pred             ecCCCEE-EEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc----e-E-EEeCCCCCceeEeeeeC--CEEEEEeCCeE
Q psy16019         34 QLKDSVL-NIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY----H-T-VTLGLPHHSVRSLAAVY--NKVWCGYKNKI  104 (121)
Q Consensus        34 ~l~~~V~-~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~----~-~-i~lg~~~~pV~~m~~v~--~~lw~~~gn~I  104 (121)
                      ++|..|. |+...++.||||.-||.|..|.-..++.-...+.    . + -.++  .+||+.|....  +-+.+-|.++|
T Consensus        13 ~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~--kk~i~~l~~~~~~~~ll~l~dsqi   90 (877)
T KOG2063|consen   13 RLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFS--KKPINKLLVCASLELLLILSDSQI   90 (877)
T ss_pred             hcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhc--cchhHHHhhcchhcchheecCCcc
Confidence            4566677 9999999999999999999998766542111111    1 1 1333  38999998885  77889999999


Q ss_pred             EEEeCCCCcE
Q psy16019        105 HVVDPKSLDV  114 (121)
Q Consensus       105 ~Vi~~~tl~i  114 (121)
                      .+.+..+++-
T Consensus        91 ~~~~l~~~~~  100 (877)
T KOG2063|consen   91 AVHKLPELEP  100 (877)
T ss_pred             eeeecCcccc
Confidence            9998888765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=84.70  E-value=2.1  Score=24.67  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=19.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCc
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVS   24 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~   24 (121)
                      ++..+.+-+||++|.|++|.++-
T Consensus        20 ~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   20 CPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCCCCEEEEEECCCeEEEEECCC
Confidence            34567899999999999999843

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=84.67  E-value=13  Score=30.33  Aligned_cols=106  Identities=14%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             eEEEEec----CCeEEEEECCcccc--eeeeeEecCCCEEEEEEeCCE--EEEEecC---CcEEEEEcCCC-CCCCCCCc
Q psy16019          7 TMWLGSQ----NGSVFVHSAVSQWR--RCLHSIQLKDSVLNIVHVQGR--VVCALAD---GSVAIFRRGPD-GQWDLSKY   74 (121)
Q Consensus         7 tvwiGt~----~g~I~v~~~~~~~~--~~l~~~~l~~~V~~i~~~~~~--v~v~Lan---G~l~Vy~r~~~-g~wd~~~~   74 (121)
                      ++++||-    ++.|++|++.....  ..++.+.-++.++=|..++++  +|++-.+   |.++.|+-+.+ |.-.+-+.
T Consensus         4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~   83 (346)
T COG2706           4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR   83 (346)
T ss_pred             EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec
Confidence            6889984    68999999885322  123344445677777777654  9999887   77999976532 32111111


Q ss_pred             eEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCC-CcEEE
Q psy16019         75 HTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKS-LDVIR  116 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~t-l~i~~  116 (121)
                      .. .-|.  .| ..+++.  +..|++++=  +.|.|+-..+ +.+..
T Consensus        84 ~~-~~g~--~p-~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~  126 (346)
T COG2706          84 QT-LPGS--PP-CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP  126 (346)
T ss_pred             cc-cCCC--CC-eEEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence            11 1222  22 233333  456777654  6788887644 44443

>KOG1408|consensus

Probab=84.44  E-value=8.7  Score=34.57  Aligned_cols=107  Identities=14%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             cCCeEEEEECCcccc--eeeeeEecCCCEEEEEEe-------------CCEEEEEecCCcEEEEEcCCCCCCCC------
Q psy16019         13 QNGSVFVHSAVSQWR--RCLHSIQLKDSVLNIVHV-------------QGRVVCALADGSVAIFRRGPDGQWDL------   71 (121)
Q Consensus        13 ~~g~I~v~~~~~~~~--~~l~~~~l~~~V~~i~~~-------------~~~v~v~LanG~l~Vy~r~~~g~wd~------   71 (121)
                      +|.+||||+..+.-|  |+.-.+-+.+-|-+++..             ++......+||+|-+|.....-.-++      
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            689999999998633  222222333444444322             22344566788887765432100000      


Q ss_pred             -----------CCceE-------------EEeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         72 -----------SKYHT-------------VTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 -----------~~~~~-------------i~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                                 .+...             ...-++.--+||+.+..  ..|..|-+ .++.|.+...++..-.+|
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e  498 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME  498 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence                       00011             11123457899999884  66777665 689999988776654444

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=84.34  E-value=4.3  Score=32.25  Aligned_cols=66  Identities=11%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             CCCeEEEEecCCeEEEEECCcc---cceeeeeEecCC-CEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQ---WRRCLHSIQLKD-SVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWD   70 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~---~~~~l~~~~l~~-~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd   70 (121)
                      ..+.+|+.++-|.|+.=+..+.   |.+...-++... .++++.|. ++.+|++..+|+|.+ +.+.+..|.
T Consensus       196 ~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~  266 (302)
T PF14870_consen  196 PDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQ  266 (302)
T ss_dssp             TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-E
T ss_pred             CCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccce
Confidence            3478999999888887762332   222221122223 58999998 579999999997765 444445564

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=84.31  E-value=14  Score=27.02  Aligned_cols=99  Identities=19%  Similarity=0.249  Sum_probs=61.3

Q ss_pred             CeEEEEec-CCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCE--EEEE-ecCCcEEEEEcCCCCCCCCCCceEEE--
Q psy16019          6 PTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGR--VVCA-LADGSVAIFRRGPDGQWDLSKYHTVT--   78 (121)
Q Consensus         6 ~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~--v~v~-LanG~l~Vy~r~~~g~wd~~~~~~i~--   78 (121)
                      ..+..+.+ ++.+.+|+...  .+.+..+.. .+.|.++.+..+.  ++++ ..||.+.+|        |......+.  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w--------d~~~~~~~~~~  237 (466)
T COG2319         168 KLLASGSSLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW--------DLSTGKLLRST  237 (466)
T ss_pred             CEEEecCCCCCceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE--------ECCCCcEEeee
Confidence            35666665 99999999887  455666654 4789999988442  6666 788999987        333222322  


Q ss_pred             eCCCCCc-eeEeeeeCCEEEEEeC-CeEEEEeCCCCcE
Q psy16019         79 LGLPHHS-VRSLAAVYNKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        79 lg~~~~p-V~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      +...... +.+....+..+..++. +.+.+++..+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         238 LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             cCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            3221112 3344444444444444 6799998887654

>KOG3621|consensus

Probab=84.26  E-value=1.7  Score=38.25  Aligned_cols=62  Identities=16%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             CCCeEEEEecCCeEEEEECCccccee---eeeEe--cCCCEEEEEEeCC--EEEEEecCCcEEEEEcCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRC---LHSIQ--LKDSVLNIVHVQG--RVVCALADGSVAIFRRGP   65 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~---l~~~~--l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~   65 (121)
                      ....|-.||++|.|.||..+..-+..   +....  ++..|+|+.+..|  ++|.|-.-|+|..-+-+.
T Consensus        87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            34457789999999999987742222   23333  3679999999765  899999999988775543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=84.12  E-value=21  Score=29.02  Aligned_cols=103  Identities=17%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecC-----------C--CEEEEEEeCCEEEEEecCCc----------EEEEE
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-----------D--SVLNIVHVQGRVVCALADGS----------VAIFR   62 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-----------~--~V~~i~~~~~~v~v~LanG~----------l~Vy~   62 (121)
                      ++.+-=|-+|.+|-.+.....-+......+-           .  .++.+....+++||-.-.|.          |-|| 
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~-  274 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY-  274 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE-
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE-
Confidence            4555578899999887666433444444431           1  34444445678887544332          2333 


Q ss_pred             cCCCCCCCCCCceE---EEeCCCCCceeEeeeeC--C-EEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         63 RGPDGQWDLSKYHT---VTLGLPHHSVRSLAAVY--N-KVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        63 r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v~--~-~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                             |++..+.   +.+.   .|+.+|.+..  + .|++.++  ..++|+|+.|++..++.+
T Consensus       275 -------D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  275 -------DLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             -------ETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             -------ECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence                   5666555   3443   4888888884  3 5666665  369999999999999875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.85  E-value=17  Score=27.69  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=65.1

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCE-EEEEecC----C---cEEEEEcCCCCCCCCC---
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGR-VVCALAD----G---SVAIFRRGPDGQWDLS---   72 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~-v~v~Lan----G---~l~Vy~r~~~g~wd~~---   72 (121)
                      .++-+.+++..++|.+|++.+...+.+.+|..=+.|..|.|...- =.|.|..    .   .+-+|-     .|...   
T Consensus        27 g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~-----NWr~~~~~  101 (215)
T PF14761_consen   27 GPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF-----NWRSQKEE  101 (215)
T ss_pred             CCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEE-----Ehhhhccc
Confidence            347888999999999999985434567777666999999997432 2233322    1   355552     23322   


Q ss_pred             -Cc-eEEEeCC-------------------C-CCceeEeeee--CCEEEEEeCCeEEEEeCCCCc
Q psy16019         73 -KY-HTVTLGL-------------------P-HHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLD  113 (121)
Q Consensus        73 -~~-~~i~lg~-------------------~-~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~  113 (121)
                       .| +..-+|.                   | +.|..|++--  .+.|-.||+|++.++......
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~  166 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT  166 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence             11 1112220                   1 3466666644  599999999999998554433

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=83.58  E-value=12  Score=30.59  Aligned_cols=44  Identities=20%  Similarity=0.376  Sum_probs=35.7

Q ss_pred             eEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEecCCcEEEEE
Q psy16019         16 SVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALADGSVAIFR   62 (121)
Q Consensus        16 ~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~LanG~l~Vy~   62 (121)
                      .|.||+...   +.+.++... +.+.++.+.+ ..+.+=+.||.+.+|+
T Consensus        62 ~I~iys~sG---~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~  107 (410)
T PF04841_consen   62 SIQIYSSSG---KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYD  107 (410)
T ss_pred             EEEEECCCC---CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEe
Confidence            599999888   567777766 7888988854 4788888999999994

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.33  E-value=10  Score=31.51  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccce---eeeeEecCCCEEEEEEe------CCEEEEEecCCcEEEEEcC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRR---CLHSIQLKDSVLNIVHV------QGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~---~l~~~~l~~~V~~i~~~------~~~v~v~LanG~l~Vy~r~   64 (121)
                      +..+.+-+|+.+|.|.||.......+   .+-..++.+||++|..-      ++.-.|-|---.|+||+-.
T Consensus        35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~  105 (418)
T PF14727_consen   35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS  105 (418)
T ss_pred             CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence            35679999999999999998664323   45667888999999864      3345566888889999873

>KOG1963|consensus

Probab=83.28  E-value=20  Score=32.31  Aligned_cols=91  Identities=11%  Similarity=0.094  Sum_probs=57.8

Q ss_pred             cCCeEEEEECCcccce-eeeeE--ecCCCEEEE--EEeCCEEEEEecCCcEEEEEcCC-CCCCCCCCceEEEeCCCCCce
Q psy16019         13 QNGSVFVHSAVSQWRR-CLHSI--QLKDSVLNI--VHVQGRVVCALADGSVAIFRRGP-DGQWDLSKYHTVTLGLPHHSV   86 (121)
Q Consensus        13 ~~g~I~v~~~~~~~~~-~l~~~--~l~~~V~~i--~~~~~~v~v~LanG~l~Vy~r~~-~g~wd~~~~~~i~lg~~~~pV   86 (121)
                      -+..+++|......+. +.+.+  ++.-.++|.  .+.++.+-+|-.||.|.|++... ++  |-..+++++=..  .+|
T Consensus       179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--~~~t~t~lHWH~--~~V  254 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--DSETCTLLHWHH--DEV  254 (792)
T ss_pred             EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--ccccceEEEecc--ccc
Confidence            3567888887663221 22212  222224454  45566677777889999998764 22  556677888877  899


Q ss_pred             eEeeee--CCEEEEEeCCeEEEE
Q psy16019         87 RSLAAV--YNKVWCGYKNKIHVV  107 (121)
Q Consensus        87 ~~m~~v--~~~lw~~~gn~I~Vi  107 (121)
                      .|+..+  +..|+-|-.-.|+|.
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~  277 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVL  277 (792)
T ss_pred             ceeEEecCCceEeecccceEEEE
Confidence            999988  455666655666664

>PF01011 PQQ: PQQ enzyme repeat family

Probab=83.24  E-value=4.6  Score=21.66  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             CEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         94 NKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        94 ~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +.+++++. +.|+.+|++|+++.=+++.
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            46777766 5899999999999877654

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG3881|consensus

Probab=83.13  E-value=14  Score=30.72  Aligned_cols=99  Identities=9%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             EecC--CeEEEEECCcccceeeee----------EecCCCEEEEEEeCC---EEEEE-ecCCcEEEEEcCCCCCCCCCCc
Q psy16019         11 GSQN--GSVFVHSAVSQWRRCLHS----------IQLKDSVLNIVHVQG---RVVCA-LADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus        11 Gt~~--g~I~v~~~~~~~~~~l~~----------~~l~~~V~~i~~~~~---~v~v~-LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      |...  -.+-||++...  +..++          +..|-=+++|.+.++   +.||. .--|.|-+|.-....    .+.
T Consensus       167 GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV  240 (412)
T KOG3881|consen  167 GGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPV  240 (412)
T ss_pred             Cchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cce
Confidence            5544  45667776664  22332          233445567777654   55654 556999999332111    111


Q ss_pred             eEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         75 HTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      ..+.+..  .||+|+...  ++.++.|.. .++..||..+.+....
T Consensus       241 ~~fd~~E--~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  241 AQFDFLE--NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             eEecccc--CcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            2245555  999998877  689999988 7899999999887654

>KOG1524|consensus

Probab=82.97  E-value=3.1  Score=36.08  Aligned_cols=57  Identities=19%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~   64 (121)
                      .++..+-++||+++|.+-..   +..+++.-+ ++++|=..+  +--+..+..||.+-+|+|.
T Consensus        75 ~d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs  134 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS  134 (737)
T ss_pred             cceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc
Confidence            45888899999999998665   445666444 788887765  4468899999999999886

>KOG0313|consensus

Probab=82.77  E-value=21  Score=29.59  Aligned_cols=112  Identities=17%  Similarity=0.025  Sum_probs=75.2

Q ss_pred             eEEEEecCCeEEEEECCcccce--eeeeE-ecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCC---CCCCCCC-----
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRR--CLHSI-QLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPD---GQWDLSK-----   73 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~--~l~~~-~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~---g~wd~~~-----   73 (121)
                      ++..|++|..|.+|..+....+  +++.- -+.++|-|+...  ..+++.|..|-+|-+|+...+   ...+..+     
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~  240 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK  240 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence            5677889999988875543221  22221 345789888854  568889999999999982211   1111111     


Q ss_pred             ----------ceEEEeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         74 ----------YHTVTLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        74 ----------~~~i~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                                -.++.++.-.+||..+.-.+..+.++++  +.|.+-|.+++....++
T Consensus       241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~  297 (423)
T KOG0313|consen  241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL  297 (423)
T ss_pred             hhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeee
Confidence                      1235555546899998888877777777  78999999998877654

>KOG0272|consensus

Probab=82.58  E-value=7.2  Score=32.62  Aligned_cols=59  Identities=20%  Similarity=0.102  Sum_probs=47.9

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFR   62 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~   62 (121)
                      ++.+-.|-.|++|+..-||++..  ++++.+|. +.+-|++.+|.+   ..+..|..|+++-+|.
T Consensus       354 sPNGy~lATgs~Dnt~kVWDLR~--r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  354 SPNGYHLATGSSDNTCKVWDLRM--RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS  416 (459)
T ss_pred             CCCceEEeecCCCCcEEEeeecc--cccceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence            34555788899999999999998  67788775 447899999974   5788888999999984

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.50  E-value=20  Score=28.24  Aligned_cols=89  Identities=12%  Similarity=0.194  Sum_probs=54.3

Q ss_pred             cCCeEEEEECCcc-cceeeeeEecCCCEEEEEEe-CCEEEEEec-------CCcEEEEEcCCCCCCCCCCceEEEeCC--
Q psy16019         13 QNGSVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHV-QGRVVCALA-------DGSVAIFRRGPDGQWDLSKYHTVTLGL--   81 (121)
Q Consensus        13 ~~g~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~-~~~v~v~La-------nG~l~Vy~r~~~g~wd~~~~~~i~lg~--   81 (121)
                      +...|.+|+.... |...-.  .+...|.+|++. +++++||..       ...++.|        |+++..--.++.  
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~y--------d~~~~~w~~~~~~~   83 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATY--------DFKNQTWSSLGGGS   83 (281)
T ss_pred             CCCEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEE--------ecCCCeeeecCCcc
Confidence            4567899996652 333333  277899999986 889999863       3457777        343433322322  


Q ss_pred             ---CCCceeEeeee---CCEEEEEeC-----CeEEEEeCCC
Q psy16019         82 ---PHHSVRSLAAV---YNKVWCGYK-----NKIHVVDPKS  111 (121)
Q Consensus        82 ---~~~pV~~m~~v---~~~lw~~~g-----n~I~Vi~~~t  111 (121)
                         -+.||..+.+.   .+.+|++-+     ..|.-+|-.+
T Consensus        84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence               24788888875   477884322     3455555443

>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical

Probab=82.09  E-value=6.4  Score=22.13  Aligned_cols=24  Identities=8%  Similarity=0.076  Sum_probs=19.5

Q ss_pred             CEEEEEEeCCEEEEEecCCcEEEE
Q psy16019         38 SVLNIVHVQGRVVCALADGSVAIF   61 (121)
Q Consensus        38 ~V~~i~~~~~~v~v~LanG~l~Vy   61 (121)
                      ...++.-.++++|+|-.++-|.|+
T Consensus         3 ~a~~v~v~g~yaYva~~~~Gl~Iv   26 (42)
T PF08309_consen    3 DARDVAVSGNYAYVADGNNGLVIV   26 (42)
T ss_pred             eEEEEEEECCEEEEEeCCCCEEEE
Confidence            355778889999999887777787

The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.00  E-value=25  Score=30.94  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=26.2

Q ss_pred             EEeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCc
Q psy16019         77 VTLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLD  113 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~  113 (121)
                      |.+|..+.-|. +.+-++.++++.+  |.|.|||.++++
T Consensus       317 IPVGKsPHGV~-vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        317 VPVPKNPHGVN-TSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             EECCCCccceE-ECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            56665334442 4555788999888  899999999977

>KOG1897|consensus

Probab=81.95  E-value=24  Score=32.68  Aligned_cols=92  Identities=14%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             eEEEEec----------CCeEEEEECCc-ccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          7 TMWLGSQ----------NGSVFVHSAVS-QWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         7 tvwiGt~----------~g~I~v~~~~~-~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      .+.+||-          .|+|.||...+ +.-+.++..++.++|.++.-.++++.||- |-+|.+|+-..        -+
T Consensus       789 ~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I-n~~vrLye~t~--------~~  859 (1096)
T KOG1897|consen  789 YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI-NQSVRLYEWTT--------ER  859 (1096)
T ss_pred             EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec-CcEEEEEEccc--------cc
Confidence            4566764          79999999887 21234666788899999999998887776 55999995332        23


Q ss_pred             EEEeCCC-CCceeEeeee--CCEEEEEeC-CeEEEE
Q psy16019         76 TVTLGLP-HHSVRSLAAV--YNKVWCGYK-NKIHVV  107 (121)
Q Consensus        76 ~i~lg~~-~~pV~~m~~v--~~~lw~~~g-n~I~Vi  107 (121)
                      .+.+... ..|+..|.+.  ++++++|-- .+|.++
T Consensus       860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            3333221 2454444333  567776665 444444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=81.83  E-value=14  Score=33.36  Aligned_cols=97  Identities=13%  Similarity=0.212  Sum_probs=67.5

Q ss_pred             CeEEEEecCCeEEEEECCcccceeee----eEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLH----SIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~----~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      ...++|..+..|+-++..-.-.+.++    .......-.|+... ++++-||..+|.|-.|.|.  |   ...-..| .+
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~--g---~~AKT~lp~l  617 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL--G---KRAKTALPGL  617 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc--c---hhhhhcCCCC
Confidence            36789999999999997764333332    23223345566543 6799999999999999763  2   1111223 55


Q ss_pred             CCCCCceeEeeee--CCEEEEEeCCeEEEEeCC
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPK  110 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~  110 (121)
                      |+   ||..|.+.  |+=|-+.|..-+.+|++.
T Consensus       618 G~---pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  618 GD---PIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             CC---CeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            66   99998887  466778999999999863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1445|consensus

Probab=81.21  E-value=8.6  Score=34.18  Aligned_cols=58  Identities=5%  Similarity=0.136  Sum_probs=41.5

Q ss_pred             eEEEEecCCeEEEEECCcc-----cceeeeeEecC-CCEEEEEEeC---CEEEEEecCCcEEEEEcC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQ-----WRRCLHSIQLK-DSVLNIVHVQ---GRVVCALADGSVAIFRRG   64 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~-----~~~~l~~~~l~-~~V~~i~~~~---~~v~v~LanG~l~Vy~r~   64 (121)
                      .+-+|++||.|-+|-...+     .....+.++.. +-|.+|.++.   +-+.+|+-|-+|-+|...
T Consensus       642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            4678999999999975543     22344556555 7888898873   567788888888887543

>KOG2444|consensus

Probab=81.06  E-value=9.9  Score=29.37  Aligned_cols=80  Identities=14%  Similarity=0.171  Sum_probs=47.6

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      ...++.+||.+|.|++|+.+..-.. ...+ ..-.+|.|+...   ++..+++..||.+--.        ...+.+.+ .
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~-~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~--------n~~p~k~~g~  139 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAH-SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRAC--------NIKPNKVLGY  139 (238)
T ss_pred             cCceEEeecccceEEEecCCccchH-HHhhhcccccceeccccccccceeEEeccCCceeee--------ccccCceeee
Confidence            4568999999999999998742111 1111 122355555443   3489999999998764        55555553 2


Q ss_pred             eCCCC-CceeEeeee
Q psy16019         79 LGLPH-HSVRSLAAV   92 (121)
Q Consensus        79 lg~~~-~pV~~m~~v   92 (121)
                      +|... .|+..+.++
T Consensus       140 ~g~h~~~~~e~~ivv  154 (238)
T KOG2444|consen  140 VGQHNFESGEELIVV  154 (238)
T ss_pred             eccccCCCcceeEEe
Confidence            22222 455554444

>KOG0650|consensus

Probab=81.05  E-value=6.9  Score=34.28  Aligned_cols=90  Identities=24%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE---EeCC
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV---TLGL   81 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i---~lg~   81 (121)
                      |..-..+..++||.+..  ++..--|+. ...|.+.+++.  -++|||.++ .|.+|        |+....++   .=|.
T Consensus       539 V~~~~~~~~VliHQLSK--~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiY--------dL~kqelvKkL~tg~  607 (733)
T KOG0650|consen  539 VMPDSGNKSVLIHQLSK--RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIY--------DLSKQELVKKLLTGS  607 (733)
T ss_pred             eccCCCcceEEEEeccc--ccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEE--------ehhHHHHHHHHhcCC
Confidence            33334567899999876  333334433 37888988874  589999998 78999        66554332   2233


Q ss_pred             CCCceeEeeee--CCEEEEEeC-CeEEEEeCC
Q psy16019         82 PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        82 ~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~  110 (121)
                        .=|.+|++.  ++.|.+|+- +++..+|+.
T Consensus       608 --kwiS~msihp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  608 --KWISSMSIHPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             --eeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence              567778877  488888766 789888874

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=80.63  E-value=32  Score=28.65  Aligned_cols=111  Identities=13%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             CCeEEEEecCCeEEEEECCccc-ceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCC-----C------------
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQW-RRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGP-----D------------   66 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~-~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~-----~------------   66 (121)
                      .+.+++=+-||.|.+|+-+... ...+-.+-+|+|+.-. ..-+..+++.++..|.-|+-..     +            
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~-~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~  223 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYC-PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI  223 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEe-ecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence            4688999999999999977643 2334456678876333 3345788888888999887531     1            


Q ss_pred             -CCCCCCCceEEEeCCCCCceeEeeeeC-----CEEEEEeCCeEEEEeCCC-CcEEEEEE
Q psy16019         67 -GQWDLSKYHTVTLGLPHHSVRSLAAVY-----NKVWCGYKNKIHVVDPKS-LDVIRPVT  119 (121)
Q Consensus        67 -g~wd~~~~~~i~lg~~~~pV~~m~~v~-----~~lw~~~gn~I~Vi~~~t-l~i~~~~~  119 (121)
                       ..-.+.+...+.+|+   ++-.|..+.     ..+-+=|..++++++... ++.+++|+
T Consensus       224 ~~~k~l~~dWs~nlGE---~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd  280 (418)
T PF14727_consen  224 SSGKKLNPDWSFNLGE---QALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLD  280 (418)
T ss_pred             cccccccceeEEECCc---eeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEEEEEecC
Confidence             112233335578888   666777664     356666678888887743 33334443

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=80.39  E-value=18  Score=28.26  Aligned_cols=62  Identities=16%  Similarity=0.241  Sum_probs=43.3

Q ss_pred             cCCCEEEEEEe---------CCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeee------eCCEE
Q psy16019         35 LKDSVLNIVHV---------QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAA------VYNKV   96 (121)
Q Consensus        35 l~~~V~~i~~~---------~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~------v~~~l   96 (121)
                      -++.|+||...         -..+.+|..+|.|.|.        |.+...+   +.+..  -|+ +|..      ++-++
T Consensus       175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iL--------d~~af~il~~~~lps--vPv-~i~~~G~~devdyRI  243 (257)
T PF14779_consen  175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYIL--------DPQAFTILKQVQLPS--VPV-FISVSGQYDEVDYRI  243 (257)
T ss_pred             cCceeEEeeeecccccCCCCcceEEEEecCCeEEEE--------CchhheeEEEEecCC--Cce-EEEEEeeeeccceEE
Confidence            34688898764         2479999999999999        5555544   45544  555 3333      44678


Q ss_pred             EEEeC-CeEEEE
Q psy16019         97 WCGYK-NKIHVV  107 (121)
Q Consensus        97 w~~~g-n~I~Vi  107 (121)
                      .++|+ ++|+.|
T Consensus       244 ~Va~Rdg~iy~i  255 (257)
T PF14779_consen  244 VVACRDGKIYTI  255 (257)
T ss_pred             EEEeCCCEEEEE
Confidence            89999 478876

>KOG0645|consensus

Probab=80.36  E-value=28  Score=27.79  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             eEEEEecCCeEEEEECCcc-cceeeeeE--ecCCCEEEEEE--eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQ-WRRCLHSI--QLKDSVLNIVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~-~~~~l~~~--~l~~~V~~i~~--~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      .+.-+.+|..|.||+..+. .-.|+..+  .+..+|-++..  +..++.+|.=|+++.||... ++.|.  -  +=+|.-
T Consensus        29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efe--c--v~~lEG  103 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFE--C--VATLEG  103 (312)
T ss_pred             EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCcee--E--Eeeeec
Confidence            4677888999999998852 11244333  24568888888  57788889999999999765 33232  1  224444


Q ss_pred             CCCceeEeeeeC--CEEEEEeC-CeEEEEeCC
Q psy16019         82 PHHSVRSLAAVY--NKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        82 ~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~  110 (121)
                      +..-|+|.+-..  +-|.-+++ ..|.|-...
T Consensus       104 HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen  104 HENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             cccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            557899988773  44444444 456665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.91
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.86
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.86
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.86
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.82
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.8
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.77
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.75
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.74
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.73
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.72
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.71
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.7
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.67
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.66
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.65
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.64
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.63
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.61
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.61
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.6
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.59
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.58
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.57
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.57
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.57
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.56
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.56
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.56
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.55
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.55
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.55
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.54
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.54
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.53
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.53
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.51
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.51
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.51
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.51
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.51
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.51
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.49
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.48
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.47
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.47
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.46
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.46
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.46
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.45
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.45
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.45
2pm7_B	297	Protein transport protein SEC13, protein transport	98.44
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.43
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.43
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.42
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.41
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.4
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.4
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.39
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.39
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.39
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.38
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.38
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.37
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.36
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.36
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.35
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.35
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.35
3jro_A	753	Fusion protein of protein transport protein SEC13	98.34
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.33
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.32
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.31
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.31
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.3
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.3
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.26
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.26
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.26
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.25
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.24
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.23
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.22
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.21
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.21
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.2
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.2
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.19
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.19
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.19
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.19
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.18
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.18
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.17
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.17
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.17
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.17
2pm7_B	297	Protein transport protein SEC13, protein transport	98.16
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.14
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.14
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.13
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.11
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.11
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.1
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.09
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.09
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.09
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.08
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.08
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.08
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.07
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.07
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.07
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.05
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.04
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.02
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.01
3jro_A	753	Fusion protein of protein transport protein SEC13	98.01
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.0
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.99
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.96
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.95
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.91
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.9
3ott_A	758	Two-component system sensor histidine kinase; beta	97.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.88
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.86
3ott_A	758	Two-component system sensor histidine kinase; beta	97.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.76
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.72
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.59
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.57
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.56
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.54
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.54
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.53
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.49
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.46
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.44
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.41
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.38
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.37
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.36
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.36
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.35
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.34
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.34
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.32
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.26
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.24
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.14
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.13
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.12
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.06
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.05
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.05
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.99
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	96.98
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.93
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.83
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.75
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.73
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.72
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.68
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.58
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.49
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.43
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.42
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.37
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	96.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.31
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.27
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.2
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.07
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.7
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.65
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	94.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	94.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	94.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	94.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	94.68
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.57
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.57
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	94.3
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	93.46
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.44
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.33
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	92.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	91.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	91.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	91.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	90.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	90.61
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	90.52
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	90.36
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	89.24
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	89.08
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	88.79
2p4o_A	306	Hypothetical protein; putative lactonase, structur	87.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	85.82
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	85.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	85.71
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	85.44
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	83.83
1q47_A	495	Semaphorin 3A; beta propeller, signaling protein;	83.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	83.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	82.46
3kya_A	496	Putative phosphatase; structural genomics, joint c	82.28
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	81.92
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	81.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	81.08
2qe8_A	343	Uncharacterized protein; structural genomics, join	80.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	80.45

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.91  E-value=9e-08  Score=74.34  Aligned_cols=105  Identities=17%  Similarity=0.234  Sum_probs=84.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~   82 (121)
                      .+.+..|+.||.|.+|+..+  .+++.+++ +.++|.++.+.++.+++|..||+|.+|        |+++.+.+ .+...
T Consensus       129 g~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vw--------d~~~~~~~~~~~~h  198 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVT--GKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW--------NAETGECIHTLYGH  198 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTT--CCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEE--------ETTTTEEEEEECCC
T ss_pred             CCEEEEEECCCcEEEEECCC--CcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEE--------ECCcCcEEEEECCC
Confidence            56788999999999999887  46667765 458999999999999999999999998        44444332 34334


Q ss_pred             CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..+|+|+...++.+..|+. +.|.+.|..+.+..+.+.
T Consensus       199 ~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~  236 (445)
T 2ovr_B          199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM  236 (445)
T ss_dssp             SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred             CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence            5899999999999888887 589999999988877764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.90  E-value=4.7e-08  Score=73.95  Aligned_cols=107  Identities=10%  Similarity=0.073  Sum_probs=86.1

Q ss_pred             CCCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc---eEEEe
Q psy16019          4 VLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY---HTVTL   79 (121)
Q Consensus         4 ~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~~i~l   79 (121)
                      ..+.+|+.| +++.+++|+..+  .+.+.+++.+..=..+.+.++++|++-.++.|.++        |.+..   +.|++
T Consensus        73 ~~~~ly~ltw~~~~v~v~D~~t--l~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~i--------Dp~t~~~~~~I~V  142 (243)
T 3mbr_X           73 WRDRLIQLTWRNHEGFVYDLAT--LTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKL--------DPDTLQQVGSIKV  142 (243)
T ss_dssp             ETTEEEEEESSSSEEEEEETTT--TEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEE--------CTTTCCEEEEEEC
T ss_pred             eCCEEEEEEeeCCEEEEEECCc--CcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEE--------eCCCCeEEEEEEE
Confidence            357899998 689999999988  67888998875334677888899999999999998        55555   44777


Q ss_pred             CCCCCcee---EeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         80 GLPHHSVR---SLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        80 g~~~~pV~---~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++...|++   -|..++++||+.+.  |.|.+||++|+++...+.+
T Consensus       143 ~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             EETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred             ccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            65445554   56777999999984  8999999999999998874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.86  E-value=1.2e-07  Score=73.71  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=76.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~~   82 (121)
                      ...+..|+.||.|.+|+..+  .+++.++.. .++|.++.+.++.+++|..||+|.+|+.....     .... -.+...
T Consensus       183 ~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~~  255 (435)
T 1p22_A          183 ERVIITGSSDSTVRVWDVNT--GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT-----DITLRRVLVGH  255 (435)
T ss_dssp             SSEEEEEETTSCEEEEESSS--CCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----CCEEEEEECCC
T ss_pred             CCEEEEEcCCCeEEEEECCC--CcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----CceeeeEecCC
Confidence            45677888888888888776  355666643 46888888888888888888888887543221     1111 122222


Q ss_pred             CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..+|.++...++.+..|+. +.|.+.|..+.+..+.++
T Consensus       256 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  293 (435)
T 1p22_A          256 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN  293 (435)
T ss_dssp             SSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence            4788898888888888887 579999999988887765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.86  E-value=8.6e-08  Score=73.52  Aligned_cols=107  Identities=11%  Similarity=0.177  Sum_probs=85.4

Q ss_pred             CCCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEe
Q psy16019          4 VLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTL   79 (121)
Q Consensus         4 ~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~l   79 (121)
                      ..+.+|+.+ +++.+++|+..+  .+.+.+++.+..=..+.+.+.++|++-.++.|.++        |.+..+.   |.+
T Consensus       104 ~g~~Ly~ltw~~~~v~V~D~~T--l~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~i--------Dp~T~~v~~~I~V  173 (268)
T 3nok_A          104 DGERLYQLTWTEGLLFTWSGMP--PQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFH--------EPDGFALVGAVQV  173 (268)
T ss_dssp             CSSCEEEEESSSCEEEEEETTT--TEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEE--------CTTTCCEEEEEEC
T ss_pred             eCCEEEEEEccCCEEEEEECCc--CcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEE--------cCCCCeEEEEEEe
Confidence            467899998 689999999988  67888898874334566889999999999999998        5555544   677


Q ss_pred             CCCCCce---eEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         80 GLPHHSV---RSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        80 g~~~~pV---~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +....|+   .-|..++++||+++-  |.|.+||++|+++..++.+
T Consensus       174 ~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          174 KLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             EETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             CCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence            6544555   456777899999984  8999999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.86  E-value=4.7e-07  Score=66.20  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=84.8

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ...+.+..|+++|.|++|+...  .+.+..+..+.++.++.+..  +.+++|..||.|.+|        |+.......+.
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~--------~~~~~~~~~~~  262 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLRE--GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL--------HVNKPDKYQLH  262 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTSSCEEEEC
T ss_pred             CCCCEEEEEecCCcEEEEECCC--CceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEE--------ECCCCCeEEEc
Confidence            4566899999999999999987  46777788889999999864  478999999999998        44455555555


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      ....+|+++...  ++.|..++. +.|.++|..+.+....+
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence            556899999988  466777776 68999999998877544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.82  E-value=1.1e-07  Score=72.55  Aligned_cols=106  Identities=8%  Similarity=0.082  Sum_probs=83.8

Q ss_pred             CCeEEEEec-CCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc---eEEEe
Q psy16019          5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY---HTVTL   79 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~~i~l   79 (121)
                      .+.+|+.++ ++.+++|+..+  .+.+.+++.+ ..=.-+.+.+.++|++..++.|.++        |.+..   +.|.+
T Consensus        75 g~~lyv~t~~~~~v~viD~~t--~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~vi--------D~~t~~v~~~I~V  144 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRT--LSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEI--------DPHTFKLIKKHNV  144 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTT--TEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEE--------CTTTCCEEEEEEC
T ss_pred             CCEEEEEEecCCEEEEEECCC--CcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEE--------ECCCCcEEEEEEE
Confidence            468999995 78999999887  5778888765 3223477778899999999999999        55554   45777


Q ss_pred             CCCCCce---eEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         80 GLPHHSV---RSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        80 g~~~~pV---~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +....|+   .-|...+++||+...  |.|.+||++|+++..++.+
T Consensus       145 g~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          145 KYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             EETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence            7533564   467777899999985  8999999999999999875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.82  E-value=5.6e-08  Score=74.32  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=84.2

Q ss_pred             CCCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE---EEe
Q psy16019          4 VLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTL   79 (121)
Q Consensus         4 ~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---i~l   79 (121)
                      ..+.+|+.| +++.+++|+..+  .+.+.+++.+..=.-+.+.++++|++-.++.|.++        |.+..+.   |.+
T Consensus        95 ~g~~ly~ltw~~~~v~v~D~~t--~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~i--------Dp~T~~v~~~I~V  164 (262)
T 3nol_A           95 WKDKIVGLTWKNGLGFVWNIRN--LRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFL--------DPESLTPVRTITV  164 (262)
T ss_dssp             ETTEEEEEESSSSEEEEEETTT--CCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEE--------CTTTCSEEEEEEC
T ss_pred             eCCEEEEEEeeCCEEEEEECcc--CcEEEEEECCCCceEEecCCCEEEEECCCCeEEEE--------cCCCCeEEEEEEe
Confidence            357899999 589999999988  67788898874223556778899999888889988        5555544   677


Q ss_pred             CCCCCcee---EeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         80 GLPHHSVR---SLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        80 g~~~~pV~---~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++...|++   -|..++++||+++-  |.|.+||++|+++...+.+
T Consensus       165 ~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          165 TAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             ccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            54335654   47788999999985  8999999999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.80  E-value=1.5e-07  Score=68.37  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC-EEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG-RVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLP   82 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~   82 (121)
                      +.+..|+++|.|.+|+...  .+++..++ ..++|.++.+..+ ++++|..||.|.+|        |+.+.+.+ .+..+
T Consensus       196 ~~~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iw--------d~~~~~~~~~~~~~  265 (313)
T 3odt_A          196 GHFISCSNDGLIKLVDMHT--GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIW--------SKENGSLKQVITLP  265 (313)
T ss_dssp             TEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEE--------CTTTCCEEEEEECS
T ss_pred             CeEEEccCCCeEEEEECCc--hhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEE--------ECCCCceeEEEecc
Confidence            3488999999999999987  46777776 4589999999854 89999999999998        55554432 33333


Q ss_pred             CCceeEeeeeC-CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAVY-NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..+|.++.... +++.+|+. +.|++.|.++.+.....+
T Consensus       266 ~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          266 AISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             SSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC---
T ss_pred             CceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehhh
Confidence            47999999884 45666666 689999999987766544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.80  E-value=3.9e-07  Score=70.75  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=75.0

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~   82 (121)
                      ...+..|+.||.|.+|+...  .+++.+++ .+++|.++.+.++.+++|..||.|.+|        |+...+.+ .+...
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~--------d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW--------DVETGNCIHTLTGH  318 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEE--------ETTTCCEEEEECCC
T ss_pred             CCEEEEEcCCCEEEEEECCC--CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEE--------ECCCCCEEEEEcCC
Confidence            35677777778888887665  45566664 346788887777778888888888887        44444332 34333


Q ss_pred             CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..++.++...++.+.+|+. +.|.++|..+.+..+.++
T Consensus       319 ~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          319 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            4788888888888888887 579999998888877764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.77  E-value=3.1e-07  Score=71.34  Aligned_cols=102  Identities=17%  Similarity=0.106  Sum_probs=81.9

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGL   81 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~   81 (121)
                      ....+..|+.||.|.+|+..+  .+++..+. ++++|+++.+.++.+++|..||+|.+|+        +++.+. -.+..
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd--------~~~~~~~~~~~~  211 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD--------VNTGEMLNTLIH  211 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEE--------SSSCCEEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEeCCC--CeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEE--------CCCCcEEEEEcC
Confidence            356789999999999999877  46667775 4589999999999999999999999984        444333 24433


Q ss_pred             CCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         82 PHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        82 ~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      ...+|.++...++.+..|+. +.|.+.|..+.+..
T Consensus       212 h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred             CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc
Confidence            45899999999999988888 68999999887644

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.75  E-value=8.2e-07  Score=68.85  Aligned_cols=105  Identities=17%  Similarity=0.132  Sum_probs=84.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEe
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~l   79 (121)
                      ..+.+..|++||.|.+|+..+  .+++..+. ..+.|.++.+..  +.+++|..||+|.+|        |+.+.+. ..+
T Consensus       279 ~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw--------d~~~~~~~~~~  348 (464)
T 3v7d_B          279 HGNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW--------DLENGELMYTL  348 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE--------ETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCC--CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE--------ECCCCcEEEEE
Confidence            356799999999999999987  56777775 458999999975  489999999999998        5544444 355


Q ss_pred             CCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         80 GLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      .....+|+++...++.|..|+. +.|.+.|..+.+....+
T Consensus       349 ~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          349 QGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             CCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeee
Confidence            4445899999999999999888 58999999998766554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.74  E-value=5.4e-07  Score=66.49  Aligned_cols=107  Identities=16%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      .+.+..|++||.|.+|+..+..+.....+. +.++|.++.+..  +.+++|..||.|.+|        |++....+.+-.
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw--------d~~~~~~~~~~~  125 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW--------DLSSNQAIQIAQ  125 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE--------ETTTTEEEEEEE
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE--------EcCCCCceeecc
Confidence            468999999999999998863233335554 568999999974  479999999999998        555555544433


Q ss_pred             CCCceeEeee--eC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         82 PHHSVRSLAA--VY--NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        82 ~~~pV~~m~~--v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ...+|+++..  ..  +.|..|+. +.|.+.|..+.+....++
T Consensus       126 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  168 (368)
T 3mmy_A          126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ  168 (368)
T ss_dssp             CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE
T ss_pred             ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe
Confidence            3489999997  42  44666666 689999999998877765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.73  E-value=2.7e-06  Score=62.06  Aligned_cols=109  Identities=13%  Similarity=0.162  Sum_probs=81.8

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|+.+|.|.+|+......+....+.- ...|.++.+..  +.+++|..||.|.+|        |+...+.+ .
T Consensus       107 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~--------d~~~~~~~~~  178 (337)
T 1gxr_A          107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW--------DLHNQTLVRQ  178 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEEEE
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEE--------eCCCCceeee
Confidence            345679999999999999988743334555544 47899999874  479999999999998        45454443 4


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.....+|+++...  ++.|+.++. +.|+++|..+.+..+.++
T Consensus       179 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  222 (337)
T 1gxr_A          179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec
Confidence            43345899999887  467888877 589999999998887764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.72  E-value=5.5e-07  Score=69.84  Aligned_cols=105  Identities=14%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCce-EEEeC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYH-TVTLG   80 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-~i~lg   80 (121)
                      ...+.+..|++||.|.+|+...  .+++.+++ .+.+|.++.+.++.+++|..||+|.+|        |+.... .....
T Consensus       320 ~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vw--------d~~~~~~~~~~~  389 (464)
T 3v7d_B          320 HERKRCISASMDTTIRIWDLEN--GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW--------DANDYSRKFSYH  389 (464)
T ss_dssp             TTTTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEE--------ETTTCCEEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCC--CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEE--------ECCCCceeeeec
Confidence            4467899999999999999887  46777775 458999999999999999999999998        444432 23332


Q ss_pred             CC-CCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEE
Q psy16019         81 LP-HHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRP  117 (121)
Q Consensus        81 ~~-~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~  117 (121)
                      .. ...+.++.+.+..|.+|..+.|.+.|.++++..+.
T Consensus       390 ~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEES
T ss_pred             CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEeh
Confidence            21 23444555557888888888999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.71  E-value=8.1e-07  Score=65.96  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCCCCCCCCCCc---
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV----QGRVVCALADGSVAIFRRGPDGQWDLSKY---   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~~g~wd~~~~---   74 (121)
                      .....+..|+.||.|.||+......+.+..++ +.++|.++.+.    .+.+++|..||+|.+|+        +...   
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd--------~~~~~~~   92 (379)
T 3jrp_A           21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK--------EENGRWS   92 (379)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE--------EETTEEE
T ss_pred             CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE--------cCCCcee
Confidence            45678999999999999998753345666665 45899999986    67899999999999984        4443   


Q ss_pred             eEEEeCCCCCceeEeeeeC----CEEEEEeC-CeEEEEeCCCCcE
Q psy16019         75 HTVTLGLPHHSVRSLAAVY----NKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v~----~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      ....+.....+|+++....    +.+..|+. +.|.++|..+.+.
T Consensus        93 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           93 QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence            2334443458999999884    46777777 5899999988743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.70  E-value=8.3e-07  Score=64.41  Aligned_cols=115  Identities=16%  Similarity=0.093  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccc--eeeeeEe-cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCCCCC-CCCCCc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWR--RCLHSIQ-LKDSVLNIVHV----QGRVVCALADGSVAIFRRGPDGQ-WDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~--~~l~~~~-l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~~g~-wd~~~~   74 (121)
                      .....+..|+.||.|.+|+......  +....++ +.++|+++.+.    ++.+++|..||+|.+|+...+.. .....+
T Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  100 (351)
T 3f3f_A           21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW  100 (351)
T ss_dssp             SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred             CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence            4566899999999999999876322  3455554 45899999996    46889999999999997654321 111111


Q ss_pred             e-EEEeCCCCCceeEeeeeC----CEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         75 H-TVTLGLPHHSVRSLAAVY----NKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        75 ~-~i~lg~~~~pV~~m~~v~----~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      + ...+.....+|.++....    +.+.+|+. +.|.+.|..+.+..+.
T Consensus       101 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A          101 NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            2 334544458999999884    46777777 6899999988765443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.67  E-value=3.8e-06  Score=61.92  Aligned_cols=106  Identities=16%  Similarity=0.135  Sum_probs=81.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~   78 (121)
                      .....+..|+.||.|.+|+..+  .+++..++- .+.|.++.+..  +.+++|..||+|.+|        |+...+. -.
T Consensus        75 ~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw--------d~~~~~~~~~  144 (312)
T 4ery_A           75 SDSNLLVSASDDKTLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW--------DVKTGKCLKT  144 (312)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE--------ETTTCCEEEE
T ss_pred             CCCCEEEEECCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE--------ECCCCEEEEE
Confidence            4567889999999999999887  467777764 47899999874  589999999999998        4544433 24


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      +.....||+++...  ++.+..|+. +.|.+.|..+.+..+.+
T Consensus       145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  187 (312)
T 4ery_A          145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  187 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE
Confidence            43334899999887  356777776 68999999998877665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.67  E-value=2.1e-06  Score=65.90  Aligned_cols=109  Identities=17%  Similarity=0.016  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      .....+..|+.||.|.+|+..+  .+.+..+. ..+.|.++.+.++.+++|..||.|.+|+....      ......+..
T Consensus       144 ~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~  215 (401)
T 4aez_A          144 HDGSFLSVGLGNGLVDIYDVES--QTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIA------NHQIGTLQG  215 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSS------SCEEEEEEC
T ss_pred             CCCCEEEEECCCCeEEEEECcC--CeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccC------cceeeEEcC
Confidence            4566899999999999999887  45666764 45899999999999999999999999854321      122223333


Q ss_pred             CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         82 PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        82 ~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ...+|.++...  ++.|..|+. +.|.+.|..+.+....+.
T Consensus       216 ~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            34899999987  467777777 689999999988877663

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=5.5e-07  Score=69.02  Aligned_cols=102  Identities=9%  Similarity=0.055  Sum_probs=81.5

Q ss_pred             CCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEE--EEEeCCEEEEEec-CCcEEEEEcCCCCCCCCCCceE---E
Q psy16019          5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVHVQGRVVCALA-DGSVAIFRRGPDGQWDLSKYHT---V   77 (121)
Q Consensus         5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~~~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~---i   77 (121)
                      .+++|.+| ++|.|.+++..+  .+.++++ ++...+.  |...++++|++.- ++.+.||        |.++.+.   +
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~T--gkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~--------D~~Tl~~~~ti  132 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLES--AQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW--------SGMPPQRERTT  132 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSC--SSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE--------ETTTTEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCC--CcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE--------ECCcCcEEEEE
Confidence            46899999 568899999887  5778888 8887665  7888999999853 6789999        5566655   4


Q ss_pred             EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         78 TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +.+  .++. -++..+++||.+.| ++|++||++|+++.++++|
T Consensus       133 ~~~--~eGw-GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          133 RYS--GEGW-GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             ECS--SCCC-CEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             eCC--Ccee-EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            553  3553 45677899999997 8999999999999999987

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.66  E-value=2e-06  Score=64.84  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|+.||.|.+|+...  .+++++++ ...+|.++.+..  ..+++|..||+|.+|        |+.....+ .
T Consensus       174 pdg~~lasg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iw--------d~~~~~~~~~  243 (321)
T 3ow8_A          174 PDGKYLASGAIDGIINIFDIAT--GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY--------DVQHANLAGT  243 (321)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEE--------ETTTCCEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCC--CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEE--------ECCCcceeEE
Confidence            4566899999999999999887  56777775 447899999974  478889999999998        44444332 4


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.....+|.++...  +..|..|+. +.|.+.|..+.+..+.|.
T Consensus       244 ~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  287 (321)
T 3ow8_A          244 LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF  287 (321)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence            44334789999887  466777776 589999999999887763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.65  E-value=9.2e-07  Score=67.28  Aligned_cols=108  Identities=12%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .....+..|+.||.|.+|+...  .+++..+ .++++|.++.+..  +.+++|..||+|.+|+....     .....+.-
T Consensus       107 ~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~  179 (420)
T 3vl1_A          107 LQMRRFILGTTEGDIKVLDSNF--NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIG  179 (420)
T ss_dssp             SSSCEEEEEETTSCEEEECTTS--CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CCCEEEEC
T ss_pred             cCCCEEEEEECCCCEEEEeCCC--cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----cCceEEcC
Confidence            3456899999999999999886  4555555 4568999999974  47999999999999854321     12233433


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .  ..+|.++...  ++.|..|+. +.|.+.|..+.+..+.++
T Consensus       180 h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          180 H--RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             C--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             C--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence            3  4899999988  467887777 579999999999888875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.64  E-value=3.1e-06  Score=64.78  Aligned_cols=107  Identities=13%  Similarity=0.153  Sum_probs=83.1

Q ss_pred             CCCeEEEEecCCeEEEEECCcccc-----eeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWR-----RCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~-----~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      ....+..|++||.|.||+..+...     +++..+. +.+.|.++.++.   +.+++|..||+|.+|        |+...
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw--------d~~~~  164 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW--------DVGTG  164 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE--------ETTTT
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE--------ECCCC
Confidence            467899999999999999877411     4456665 558999999984   468889999999998        55555


Q ss_pred             eE-EEe--CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         75 HT-VTL--GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        75 ~~-i~l--g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      +. ..+  .....+|.++...  ++.|..|+. +.|.++|..+.+..+.+
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence            44 355  3335899999987  467888887 68999999999988876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.63  E-value=2.1e-06  Score=64.66  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=81.4

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEec-------CCCEEEEEEe--CCEEEEEecC---CcEEEEEcCCCCCCCCCCc
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQL-------KDSVLNIVHV--QGRVVCALAD---GSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-------~~~V~~i~~~--~~~v~v~Lan---G~l~Vy~r~~~g~wd~~~~   74 (121)
                      .+..|+++|.|.+|+..+  .+.+..++.       ..+|.++.+.  ...+++|..|   |.|.+|+        +...
T Consensus       199 ~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d--------~~~~  268 (397)
T 1sq9_A          199 LIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE--------TEFG  268 (397)
T ss_dssp             EEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE--------TTTC
T ss_pred             eEEEEeCCCcEEEEECCC--CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE--------CCCC
Confidence            888999999999999987  567777775       7799999986  4578889999   9999984        4333


Q ss_pred             eE-EEeCC-------------CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         75 HT-VTLGL-------------PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        75 ~~-i~lg~-------------~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +. ..+..             ...+|+++...  ++.|..|+. +.|++.|..+.+....++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            32 23322             24799999987  567888777 689999999999988876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.61  E-value=2.2e-06  Score=63.31  Aligned_cols=101  Identities=9%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      ...+..|+.||.|.+|+..+  .+.+..++ ..++|.++.+..   +.+++|..||.|.+|        |+...+.+ .+
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw--------d~~~~~~~~~~  154 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW--------NIQTDTLVAIF  154 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE--------ETTTTEEEEEE
T ss_pred             CCEEEEecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE--------EeecCeEEEEe
Confidence            45799999999999999887  46677776 568999999964   578888999999998        55555443 33


Q ss_pred             ---CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         80 ---GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        80 ---g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                         .....+|+++...  ++.|.+|+. +.|.+.|..+.+..
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             CSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred             cccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence               2335899999987  467888777 68999999887543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.61  E-value=2e-06  Score=66.80  Aligned_cols=107  Identities=16%  Similarity=0.241  Sum_probs=83.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      +..+.+..|++||.|.||+...  .+..++++ +.++|.++.+..  +.+++|..||+|.+|        |+.....+ .
T Consensus       118 p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw--------d~~~~~~~~~  187 (410)
T 1vyh_C          118 PVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW--------DFQGFECIRT  187 (410)
T ss_dssp             SSSSEEEEEESSSCEEEEETTT--CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE--------ETTSSCEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEECCC--CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE--------eCCCCceeEE
Confidence            3456889999999999999887  45667775 458999999874  578999999999997        55555443 3


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.....+|.++...  ++.|..|+. +.|.+.|..+.+..+.|.
T Consensus       188 ~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~  231 (410)
T 1vyh_C          188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  231 (410)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            33334799999887  467777777 689999999998887764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.60  E-value=2.7e-06  Score=65.38  Aligned_cols=105  Identities=11%  Similarity=0.060  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec---CCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL---KDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l---~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      ..+.+..|+.||.|.+|+...  .+++..++.   .+.|.++.+.  +..+++|..||+|.+|        |+...+.+ 
T Consensus       181 ~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw--------d~~~~~~~~  250 (437)
T 3gre_A          181 EKSLLVALTNLSRVIIFDIRT--LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW--------DIRFNVLIR  250 (437)
T ss_dssp             SCEEEEEEETTSEEEEEETTT--CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE--------ETTTTEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCC--CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE--------EcCCccEEE
Confidence            366899999999999999987  567777764   4799999996  4578999999999998        55555443 


Q ss_pred             --EeCCCCCceeEeeeeC------CEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         78 --TLGLPHHSVRSLAAVY------NKVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        78 --~lg~~~~pV~~m~~v~------~~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                        .++. ..||+++....      ..|..|+.+ .|.+.|..+++..+.|.
T Consensus       251 ~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          251 SWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             EEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred             EEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence              3333 36999995542      256666664 69999999999888775

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.59  E-value=4.6e-06  Score=61.52  Aligned_cols=107  Identities=12%  Similarity=0.062  Sum_probs=78.3

Q ss_pred             CCCeEEEEecCCeEEEEECCcccc-eeeeeEe---cCCCEEEEEEeCC------EEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWR-RCLHSIQ---LKDSVLNIVHVQG------RVVCALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~-~~l~~~~---l~~~V~~i~~~~~------~v~v~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      ..+.+..+..+|.|.+|+..+... +.+....   ....|+++.+..+      .+++|..||.|.+|        |+.+
T Consensus        33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~--------d~~~  104 (366)
T 3k26_A           33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII--------NPIT  104 (366)
T ss_dssp             TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE--------CTTT
T ss_pred             CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE--------Echh
Confidence            356789999999999999886311 2333333   2368999998865      79999999999998        4444


Q ss_pred             ceEE-EeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         74 YHTV-TLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        74 ~~~i-~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      .+.+ .+.....+|+++....   +.|..|+. +.|.+.|..+.+....+
T Consensus       105 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A          105 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            4332 3322348999999863   66777776 68999999999888776

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.58  E-value=5.2e-06  Score=61.16  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|+.||.|.+|+..+  .+....+. ...+|.++.+..  +.+++|..||+|.+|        |+++.+.+ .
T Consensus        33 ~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw--------d~~~~~~~~~  102 (312)
T 4ery_A           33 PNGEWLASSSADKLIKIWGAYD--GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW--------DVSSGKCLKT  102 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE--------ETTTCCEEEE
T ss_pred             CCCCEEEEeeCCCeEEEEeCCC--cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE--------ECCCCcEEEE
Confidence            4456788999999999999877  35555664 457999999874  578899999999998        44444332 3


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.....+|.++...  ++.|..|+. +.|.+.|.++.+..+.+.
T Consensus       103 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  146 (312)
T 4ery_A          103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP  146 (312)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence            32234799998887  366777776 689999999998887764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.58  E-value=2.8e-06  Score=64.42  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             CCeEEEEec-CCeEEEEECCcccceeeeeEecCCCEEEEEE-eCCEEEEEe-cCCcEEEEEcCCCCCCCCCCceE---EE
Q psy16019          5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH-VQGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT---VT   78 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~-~~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~---i~   78 (121)
                      .+.+|++++ ++.|.+++..+  .+.++++.....+..|.. .++++||+. .+|.|.+|        |.+..++   +.
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~i--------D~~t~~~~~~i~  122 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINT--FKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFII--------NPKTYEITGYIE  122 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTT--CCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEE--------ETTTTEEEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECcc--cEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEE--------ECCCCeEEEEEE
Confidence            467899987 68999999887  456677765567778887 678999999 78999999        5555444   45


Q ss_pred             eCCCC---CceeEeeeeCCEEEEEe---CCeEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLPH---HSVRSLAAVYNKVWCGY---KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~~---~pV~~m~~v~~~lw~~~---gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++...   .....|+..+++||++.   ++.|.+||++|+++.+++++
T Consensus       123 ~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            55410   12345667899999996   47899999999999988764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.57  E-value=6e-06  Score=61.98  Aligned_cols=109  Identities=9%  Similarity=0.069  Sum_probs=77.7

Q ss_pred             CCCC-eEEEEecCCeEEEEEC----Ccccc----eeeeeEec-----------CCCEEEEEEeC--CEEEEEecCCcEEE
Q psy16019          3 SVLP-TMWLGSQNGSVFVHSA----VSQWR----RCLHSIQL-----------KDSVLNIVHVQ--GRVVCALADGSVAI   60 (121)
Q Consensus         3 ~~~~-tvwiGt~~g~I~v~~~----~~~~~----~~l~~~~l-----------~~~V~~i~~~~--~~v~v~LanG~l~V   60 (121)
                      ...+ .+..|+.||.|.+|+.    .+...    .....+..           .++|.++.+..  +.+++|..||.|.+
T Consensus        55 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  134 (425)
T 1r5m_A           55 PLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRL  134 (425)
T ss_dssp             SSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence            3455 8999999999999998    55310    02333333           35899999974  47999999999999


Q ss_pred             EEcCCCCCCCCCCceEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         61 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        61 y~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      |+        .+......+.....+|+++...  ++.|+.++. +.|.++|..+.+..+.+.
T Consensus       135 ~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          135 WN--------KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             EE--------TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             Ee--------CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            95        2222333444445899999987  467877776 689999999999888765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.57  E-value=2.3e-06  Score=64.90  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=78.2

Q ss_pred             CCeEEEEe-cCCeEEEEECCcccceeeeeEecCC------CEEEEEEeCCEEEEEe--cCCcEEEEEcCCCCCCCCCCce
Q psy16019          5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKD------SVLNIVHVQGRVVCAL--ADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~------~V~~i~~~~~~v~v~L--anG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      .+.+|++. .++.|++++..+  .+..+++.++.      ....|...++++||+.  .+++|.+|        |.+..+
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t--~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~vi--------D~~t~~  163 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKT--YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKI--------DTETDK  163 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTT--TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEE--------ETTTTE
T ss_pred             CCeEEEEECCCCeEEEEECCC--CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEE--------ECCCCe
Confidence            35899999 789999999887  46667777665      6666777899999998  38899999        444443


Q ss_pred             ---EEEeCCCCCceeEeeee-CCEEEEEeC------------CeEEEEeCCCCcEEEEEEe
Q psy16019         76 ---TVTLGLPHHSVRSLAAV-YNKVWCGYK------------NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        76 ---~i~lg~~~~pV~~m~~v-~~~lw~~~g------------n~I~Vi~~~tl~i~~~~~~  120 (121)
                         .+.++.  .| ..|... ++++|+++.            +.|++||+.|+++.+.+.+
T Consensus       164 ~~~~i~~g~--~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~  221 (328)
T 3dsm_A          164 VVDELTIGI--QP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF  221 (328)
T ss_dssp             EEEEEECSS--CB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcCC--Cc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence               355655  45 355555 488999886            4799999999999988764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.57  E-value=4.3e-06  Score=63.09  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=81.7

Q ss_pred             CeEEEEecC---CeEEEEECCcccceeeeeEecCCCEE--EEEEeCCEEEEEec-CCcEEEEEcCCCCCCCCCCceE---
Q psy16019          6 PTMWLGSQN---GSVFVHSAVSQWRRCLHSIQLKDSVL--NIVHVQGRVVCALA-DGSVAIFRRGPDGQWDLSKYHT---   76 (121)
Q Consensus         6 ~tvwiGt~~---g~I~v~~~~~~~~~~l~~~~l~~~V~--~i~~~~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~---   76 (121)
                      +++|.+|..   ..|.+++..+  .+.++++++|+..+  -|...++++|+..- ++.+.||        |.++.+.   
T Consensus        31 ~~LyestG~~g~S~v~~vD~~t--gkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~--------D~~tl~~~~t  100 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLET--GRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY--------DLATLTPRAR  100 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTT--CCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE--------ETTTTEEEEE
T ss_pred             CEEEEECCCCCCceEEEEECCC--CCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE--------ECCcCcEEEE
Confidence            689999865   4899999988  57889999997664  35777899999852 6789999        5555554   


Q ss_pred             EEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         77 VTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++.+.  ++. -|+..+++||.+.| ++|+++|++|+++.++++|
T Consensus       101 i~~~~--~Gw-glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X          101 FRYPG--EGW-ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EECSS--CCC-EEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EeCCC--Cce-EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            45543  664 55666899999999 7999999999999999987

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.57  E-value=1.6e-06  Score=65.13  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC-EEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG-RVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~-~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      .....+..|+.+|.|.+|+...  .+.+..+. ...+|.++.+..+ .++++..||.|.+|        |+...+.+ .+
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~--------d~~~~~~~~~~  326 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGN--GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW--------SLKQNTLLALS  326 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSS--BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEE--------ETTTTEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCC--CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEE--------ECCCCcEeEec
Confidence            3456899999999999999887  45666665 5589999999855 89999999999998        45444443 22


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .....+|.++...  ++.|++|+. +.|.++|..+.+
T Consensus       327 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          327 IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            2224799999887  477888887 589999999887

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.56  E-value=7e-06  Score=61.86  Aligned_cols=107  Identities=18%  Similarity=0.189  Sum_probs=81.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|+.+|.|.+|+...  .+....+..+ ..|.++.+..  ..+.+|..||.|.+|        |+...+.+ .
T Consensus       132 pdg~~l~~g~~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iw--------d~~~~~~~~~  201 (321)
T 3ow8_A          132 PDSQYLATGTHVGKVNIFGVES--GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF--------DIATGKLLHT  201 (321)
T ss_dssp             TTSSEEEEECTTSEEEEEETTT--CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEEEE
T ss_pred             CCCCEEEEEcCCCcEEEEEcCC--CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEE--------ECCCCcEEEE
Confidence            4556889999999999999887  3555666544 6899999874  478899999999998        55555443 4


Q ss_pred             eCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.....||+++....  ..|..|+. +.|++.|..+.+....+.
T Consensus       202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~  245 (321)
T 3ow8_A          202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS  245 (321)
T ss_dssp             ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc
Confidence            444458999999874  56666666 579999999988877654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.56  E-value=1.8e-06  Score=65.86  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CCeEEEEec-CC--eEEEEECCcccceeeeeEecCCCEEE--EEEeCCEEEEEec-CCcEEEEEcCCCCCCCCCCceE--
Q psy16019          5 LPTMWLGSQ-NG--SVFVHSAVSQWRRCLHSIQLKDSVLN--IVHVQGRVVCALA-DGSVAIFRRGPDGQWDLSKYHT--   76 (121)
Q Consensus         5 ~~tvwiGt~-~g--~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~~~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~--   76 (121)
                      .+++|.+|. +|  .|.+++..+  .+.++++.++...+.  |...++++|++.- ++.+.||        |.++.+.  
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~T--gkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~--------D~~t~~~~~  121 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIES--GKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW--------NIRNLRQVR  121 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTT--CCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE--------ETTTCCEEE
T ss_pred             CCEEEEECCCCCCceEEEEECCC--CcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE--------ECccCcEEE
Confidence            358999995 44  899999888  578889999877655  7888999999975 6789999        5555544  


Q ss_pred             -EEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         77 -VTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        77 -i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                       ++.+.  ++. -++..++.||.+.| ++|.++|++|+++.++++|
T Consensus       122 ti~~~~--eG~-glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          122 SFNYDG--EGW-GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EEECSS--CCC-CEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             EEECCC--Cce-EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence             55543  553 44566899999997 7899999999999999887

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.56  E-value=2.1e-06  Score=65.86  Aligned_cols=104  Identities=16%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeE-----ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI-----QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-----~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .+.+..|+.||.|.||+..+.  +++..+     .+.++|+++.+..  .+++.|..||+|.+|        |+...+.+
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~--~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw--------d~~~~~~~  162 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDEN--ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW--------DLAQQVVL  162 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTT--SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEE
T ss_pred             CCeEEEEECCCEEEEEeccCC--CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE--------ECCCCcEE
Confidence            467889999999999998773  332222     2458999999974  478899999999997        66666554


Q ss_pred             -EeCCCCCceeEeeeeC--CEE-EEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         78 -TLGLPHHSVRSLAAVY--NKV-WCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        78 -~lg~~~~pV~~m~~v~--~~l-w~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                       .+.....+|+++....  ..+ ..|+. +.|++.|..+.+..+.+
T Consensus       163 ~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          163 SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence             4443358999999874  334 44444 68999999998877665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.55  E-value=1e-05  Score=58.57  Aligned_cols=102  Identities=23%  Similarity=0.205  Sum_probs=77.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      .+.+..|++||.|.+|+ .   .+....+. ...+|.++.+.   ++.++++..||.|.+|+        ...+ ...+.
T Consensus       114 ~~~l~~~~~d~~i~~~d-~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--------~~~~-~~~~~  180 (313)
T 3odt_A          114 DGVVISGSWDKTAKVWK-E---GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--------NDKV-IKTFS  180 (313)
T ss_dssp             TTEEEEEETTSEEEEEE-T---TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--------TTEE-EEEEC
T ss_pred             CCEEEEEeCCCCEEEEc-C---CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--------cCce-EEEEe
Confidence            45788999999999999 2   34556665 44789998874   67899999999999984        2222 22333


Q ss_pred             C-CCCceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         81 L-PHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ~-~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      . ...+|+++... ++.+.+|+. +.|.++|..+.+..+.++
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          181 GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhh
Confidence            2 35899999988 466877777 589999999999888875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.55  E-value=5.9e-06  Score=61.35  Aligned_cols=107  Identities=14%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-E
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-V   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i   77 (121)
                      ++..+.+..|+.||.|.+|+...  .+++.+++.+ .+|.++.+.  ++.+++|..||+|.+|+        ++..+. .
T Consensus        22 sp~~~~l~s~~~dg~v~lWd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd--------~~~~~~~~   91 (304)
T 2ynn_A           22 HPTEPWVLTTLYSGRVELWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN--------YNTGEKVV   91 (304)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE--------TTTCCEEE
T ss_pred             CCCCCEEEEEcCCCcEEEEECCC--CceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE--------CCCCcEEE
Confidence            45667899999999999999887  4677778755 789999886  46899999999999984        443322 2


Q ss_pred             EeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCC-cEEEEE
Q psy16019         78 TLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSL-DVIRPV  118 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl-~i~~~~  118 (121)
                      .+.....+|+++....  +.|..|+. +.|.+.|.++. .+.+.+
T Consensus        92 ~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            3333348999999874  56777777 58999998876 444444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.55  E-value=5.2e-07  Score=66.55  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=75.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccce--eeeeEecCCCEEEEEEe--CC-EEEEEecCCcEEEEEcCCCCCCCC-CCceEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRR--CLHSIQLKDSVLNIVHV--QG-RVVCALADGSVAIFRRGPDGQWDL-SKYHTV   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~--~l~~~~l~~~V~~i~~~--~~-~v~v~LanG~l~Vy~r~~~g~wd~-~~~~~i   77 (121)
                      ....+..|+.||.|.+|+.....++  ......+..+|+++.+.  ++ .+++|..||.|.+|        |+ +.....
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w--------d~~~~~~~~   93 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV--------DLIGSPSFQ   93 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE--------CSSSSSSEE
T ss_pred             CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE--------EeccCCceE
Confidence            4567999999999999998764311  23333566899999987  45 79999999999998        44 444444


Q ss_pred             EeCC--CCCceeEeeee-CCEEEEEeC-CeEEEEeCCC
Q psy16019         78 TLGL--PHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        78 ~lg~--~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~t  111 (121)
                      .+..  ...+|++|... ++.+..|+. +.|.+.|..+
T Consensus        94 ~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             eccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccc
Confidence            5544  45899999988 678887777 6899998776

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.54  E-value=7.3e-06  Score=60.35  Aligned_cols=107  Identities=11%  Similarity=0.079  Sum_probs=79.7

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ....+..|+.+|.|++|+.... .+.+..+.. ..+|.++.+.  .+.++++..||.|.+|        |+...+.+..-
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~--------d~~~~~~~~~~  256 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV--------DVSTLQVLKKY  256 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE--------ETTTCCEEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE--------ECCCCceeeee
Confidence            4568899999999999998863 345666654 5799999986  4478889999999998        44444343111


Q ss_pred             CCCCceeEeeee--CCEEEEEeCC---------------eEEEEeCCCCcEEEEEE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYKN---------------KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~gn---------------~I~Vi~~~tl~i~~~~~  119 (121)
                      ....++.++...  +..+++|++.               .|.+.|..+.+....+.
T Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  312 (369)
T 3zwl_B          257 ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ  312 (369)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred             cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence            133788888877  4778888774               69999999988887764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.54  E-value=2.2e-06  Score=64.81  Aligned_cols=110  Identities=10%  Similarity=0.039  Sum_probs=80.9

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      .....+..|++||.|.+|+...   +++..+. ..+.|.++.+..+   .+++|..||+|.+|+......   .....-.
T Consensus       173 ~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~  246 (383)
T 3ei3_B          173 VSRQMLATGDSTGRLLLLGLDG---HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD---KNSYIAE  246 (383)
T ss_dssp             TTTTEEEEEETTSEEEEEETTS---CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS---TTCEEEE
T ss_pred             CCCCEEEEECCCCCEEEEECCC---CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc---ccceEEE
Confidence            3456899999999999999853   5667775 4589999999865   788999999999996543210   1112223


Q ss_pred             eCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ++. ..+|+++....   +.|..|+. +.|.+.|..+.+..+.+.
T Consensus       247 ~~~-~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          247 MPH-EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             EEC-SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             ecC-CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            332 47999999864   67777777 689999999887765553

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.53  E-value=7.9e-06  Score=61.61  Aligned_cols=105  Identities=12%  Similarity=0.206  Sum_probs=78.7

Q ss_pred             CCCCeEEE-EecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEe---cCCcEEEEEcCCCCCCCCCCceE
Q psy16019          3 SVLPTMWL-GSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCAL---ADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         3 ~~~~tvwi-Gt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~L---anG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      .....+|+ +.++|.|++|+...  .+++..+..++.+.++.+..  .++|++.   .||.|.+|        |+...+.
T Consensus       167 ~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~--------d~~~~~~  236 (391)
T 1l0q_A          167 PDGTKVYVANFDSMSISVIDTVT--NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI--------DTGTNKI  236 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTT--TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEE--------ETTTTEE
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC--CeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEE--------ECCCCeE
Confidence            34556764 56789999999887  46677777788889988874  4788888   68999998        4444433


Q ss_pred             ---EEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         77 ---VTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        77 ---i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                         +..+.   .+.++...  ++.||++++  +.|.++|..++++.+.+++
T Consensus       237 ~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          237 TARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             EEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence               34333   45677766  568988875  7899999999999988764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.53  E-value=1.9e-06  Score=63.59  Aligned_cols=101  Identities=17%  Similarity=0.123  Sum_probs=76.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      +.....+..|+.||.|.+|+..+  .+.+..++ ..++|.++.+.  ++.++++..||.|.+|        |+...+.+ 
T Consensus        41 s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw--------d~~~~~~~~  110 (369)
T 3zwl_B           41 NKEGDLLFSCSKDSSASVWYSLN--GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW--------DVSNGQCVA  110 (369)
T ss_dssp             CTTSCEEEEEESSSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE--------ETTTCCEEE
T ss_pred             cCCCCEEEEEeCCCEEEEEeCCC--chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE--------ECCCCcEEE
Confidence            34567899999999999999887  46677775 55899999997  4588999999999998        44444332 


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeCC------eEEEEeCCCCc
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYKN------KIHVVDPKSLD  113 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~gn------~I~Vi~~~tl~  113 (121)
                      .+. ...+|.++...  ++.+.+++.+      .|.++|..+.+
T Consensus       111 ~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B          111 TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            222 34799999888  4777777764      89999877654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.51  E-value=1.1e-05  Score=61.38  Aligned_cols=111  Identities=12%  Similarity=0.167  Sum_probs=82.6

Q ss_pred             CeE-EEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCC------------------
Q psy16019          6 PTM-WLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPD------------------   66 (121)
Q Consensus         6 ~tv-wiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~------------------   66 (121)
                      +.+ ..|..++.|.+|+..+  .+++..+..+++|.++....+.++++. |+.+.+|+-...                  
T Consensus        71 ~~~~~~~~~d~~v~iWd~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~  147 (355)
T 3vu4_A           71 NYVAFVTGVKEVVHIWDDVK--KQDVSRIKVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN  147 (355)
T ss_dssp             SEEEEECSSTTEEEEEETTT--TEEEEEEECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET
T ss_pred             CEEEEEECCccEEEEEECCC--CcEEEEEECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEc
Confidence            344 5688899999999887  577888888999999999988777764 778888876543                  


Q ss_pred             -------C-------CCCCCCce-----------------EEEeCCCCCceeEeeeeC--CEEEEEeC-Ce-EEEEeCCC
Q psy16019         67 -------G-------QWDLSKYH-----------------TVTLGLPHHSVRSLAAVY--NKVWCGYK-NK-IHVVDPKS  111 (121)
Q Consensus        67 -------g-------~wd~~~~~-----------------~i~lg~~~~pV~~m~~v~--~~lw~~~g-n~-I~Vi~~~t  111 (121)
                             |       .||+....                 ...+.....+|+|+....  +.|..|+. +. |.+.|..+
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence                   2       26766532                 333433358999999874  56777776 45 99999999


Q ss_pred             CcEEEEEE
Q psy16019        112 LDVIRPVT  119 (121)
Q Consensus       112 l~i~~~~~  119 (121)
                      ++..+.|+
T Consensus       228 ~~~~~~~~  235 (355)
T 3vu4_A          228 GVLVREFR  235 (355)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99988875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.51  E-value=9.4e-06  Score=61.79  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=80.3

Q ss_pred             CeEEEEec---CCeEEEEECCcccceeeeeEecCCC--EEEEEEeCCEEEEEec-CCcEEEEEcCCCCCCCCCCceE---
Q psy16019          6 PTMWLGSQ---NGSVFVHSAVSQWRRCLHSIQLKDS--VLNIVHVQGRVVCALA-DGSVAIFRRGPDGQWDLSKYHT---   76 (121)
Q Consensus         6 ~tvwiGt~---~g~I~v~~~~~~~~~~l~~~~l~~~--V~~i~~~~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~---   76 (121)
                      +++|+++.   ++.|.+++...  .+.++++.+++.  ...+...++++|++.- +|.+.||        |.+..+.   
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~t--g~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~vi--------D~~t~~v~~~  101 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQT--GKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIY--------DRRTLSNIKN  101 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTT--CCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEE--------ETTTTEEEEE
T ss_pred             CeEEEECCCCCCCEEEEEECCC--CCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEE--------ECCCCcEEEE
Confidence            68999985   57999999988  577888888753  3356677889999975 5789999        5555544   


Q ss_pred             EEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         77 VTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      |+.+ .+++.. |..-+++||.+.+ ++|++||++|+++.++++|
T Consensus       102 i~~g-~~~g~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A          102 FTHQ-MKDGWG-LATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             EECC-SSSCCE-EEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EECC-CCCeEE-EEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            5666 235543 6667899999998 8999999999999999876

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.51  E-value=1.1e-05  Score=60.75  Aligned_cols=107  Identities=14%  Similarity=0.149  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~   78 (121)
                      .....+..|+.||.|.+|+..+  .+++.++. ++++|.++.+.  ++.+++|..||+|.+|        |+...+. ..
T Consensus       194 ~~~~~l~sg~~d~~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw--------d~~~~~~~~~  263 (340)
T 1got_B          194 PDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------DLRADQELMT  263 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCC--CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE--------ECCCCcEEEE
Confidence            3456788999999999999887  46677775 45799999987  4588999999999998        5554433 33


Q ss_pred             eCCC--CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLP--HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~--~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +..+  ..+|+++...  +..|.+|+. +.|.+.|..+.+....+.
T Consensus       264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~  309 (340)
T 1got_B          264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence            4332  3589998877  467888887 589999999988877764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.51  E-value=1.5e-05  Score=63.12  Aligned_cols=104  Identities=14%  Similarity=0.059  Sum_probs=81.2

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEe-cCC---CEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKD---SVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~---~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .+..|++||.|.+|+...  .+++..++ ..+   +|.++.+..+   .+++|..||.|.+|        |+.+.+.+ .
T Consensus       175 ~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--------d~~~~~~~~~  244 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF--------DGKSGEFLKY  244 (615)
T ss_dssp             EEEEEETTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE--------ETTTCCEEEE
T ss_pred             EEEEEeCCCcEEEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE--------ECCCCCEeEE
Confidence            688999999999999877  56677776 446   8999999854   78889999999998        44444443 4


Q ss_pred             e-C---CCCCceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         79 L-G---LPHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 l-g---~~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      + .   ....+|.++... ++.|+.++. +.|.+.|..+.+..+.++.
T Consensus       245 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          245 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             ecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            4 1   235899999885 567777776 5899999999998887753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.51  E-value=1.1e-05  Score=60.91  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe---cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ---LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~---l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ..+..|+.||.|.||+....  +....++   ..++|.++.+..   +.+++|..||+|.+|        |+.......+
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw--------d~~~~~~~~~  156 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQ--NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR--------DFSGSVIQVF  156 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTST--TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE--------ETTSCEEEEE
T ss_pred             CEEEEEcCCCeEEEEeCCCc--ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE--------ECCCCceEEE
Confidence            68999999999999999873  3344443   558999999976   578899999999998        4444433333


Q ss_pred             CCC---CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         80 GLP---HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~---~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ...   ..+|+++...  ++.|+.|+. +.|.+.|. +.+....+.
T Consensus       157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~  201 (383)
T 3ei3_B          157 AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK  201 (383)
T ss_dssp             ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec
Confidence            221   3789999988  477888877 68999998 455555543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.51  E-value=1.5e-05  Score=59.62  Aligned_cols=107  Identities=8%  Similarity=0.061  Sum_probs=82.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .....+..|+.||.|.+|+..+  .+++.++. +.++|.++.+..  ..++.|..||++.+|        |++......+
T Consensus        75 ~dg~~l~s~s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw--------d~~~~~~~~~  144 (319)
T 3frx_A           75 ADGAYALSASWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW--------TIKGQCLATL  144 (319)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE--------ETTSCEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE--------ECCCCeEEEE
Confidence            4556788999999999999987  46677775 558999999874  478999999999998        5555555555


Q ss_pred             CCCCCceeEeeeeCC--------EEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAVYN--------KVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v~~--------~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .....+|.++.....        .+..|+. +.|.+.|..+.+.+..|.
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  193 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI  193 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence            444578998887642        4666666 689999999998887663

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.49  E-value=1.1e-05  Score=60.77  Aligned_cols=108  Identities=11%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             CCCCeEE-EEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEec-CCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          3 SVLPTMW-LGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         3 ~~~~tvw-iGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      .....++ .|..+|.|.+|+..+  .+.++.+..+..|.++.+.  ++++|++.. +|.|.+|        |+...+.+.
T Consensus        41 ~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~--------d~~~~~~~~  110 (391)
T 1l0q_A           41 PDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI--------DTTSNTVAG  110 (391)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE--------ETTTTEEEE
T ss_pred             CCCCEEEEECCCCCeEEEEECCC--CeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEE--------ECCCCeEEE
Confidence            3445564 555899999999877  5778888888899999997  346877664 5999998        444444432


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .-.....+.++...  ++.||++++  +.|+++|..+.+..+.++.
T Consensus       111 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  156 (391)
T 1l0q_A          111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV  156 (391)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence            11112467888877  467876655  6899999999998887753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.48  E-value=2.3e-05  Score=58.65  Aligned_cols=106  Identities=15%  Similarity=0.204  Sum_probs=81.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC--------EEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG--------RVVCALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~--------~v~v~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      .....+..|+.||.|.+|+...   +++.++ ...+.|.++.+..+        .++.|..||+|.+|        |+..
T Consensus       117 ~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w--------d~~~  185 (319)
T 3frx_A          117 KKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW--------NLNQ  185 (319)
T ss_dssp             TTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEE--------ETTT
T ss_pred             CCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE--------ECCc
Confidence            3456788999999999999875   455555 35578999988653        68999999999997        5655


Q ss_pred             ceEE-EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         74 YHTV-TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        74 ~~~i-~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+.. .+.....+|+++...  ++.|..|+. +.|++.|..+.+..+.++
T Consensus       186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            5443 343335899999987  466777776 689999999999888775

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.47  E-value=2.1e-05  Score=59.24  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=82.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~   78 (121)
                      .....+..|++||.|.||+...  .+++..++.+ +.|.++.+..  +.+++|..||.+.+|+.....    ..... ..
T Consensus        65 ~d~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~----~~~~~~~~  138 (340)
T 1got_B           65 TDSRLLLSASQDGKLIIWDSYT--TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE----GNVRVSRE  138 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTT--CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS----BSCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCC--CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC----CcceeEEE
Confidence            4556789999999999999887  4667777665 7899999874  578899999999999654321    11122 22


Q ss_pred             eCCCCCceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.....+|.|+... ++.+..|++ +.|.+.|.++.+..+.|+
T Consensus       139 ~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~  181 (340)
T 1got_B          139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEc
Confidence            32223789998877 477877777 689999999998887764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.47  E-value=4.9e-06  Score=62.27  Aligned_cols=106  Identities=16%  Similarity=0.090  Sum_probs=77.0

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe--------------cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--------------LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPD   66 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--------------l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~   66 (121)
                      ....+..|+.||.|.+|+....  +....+.              +.++|.++.+..   +.+++|..||.|.+|     
T Consensus        55 ~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-----  127 (408)
T 4a11_B           55 EGRYMLSGGSDGVIVLYDLENS--SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW-----  127 (408)
T ss_dssp             TCCEEEEEETTSCEEEEECCCC--SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEE-----
T ss_pred             CCCEEEEEcCCCeEEEEECCCC--cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEe-----
Confidence            5678999999999999998874  2222222              557999999975   368888889999998     


Q ss_pred             CCCCCCCceEEEeCCCCCceeEeeeeC-----CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         67 GQWDLSKYHTVTLGLPHHSVRSLAAVY-----NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        67 g~wd~~~~~~i~lg~~~~pV~~m~~v~-----~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                         |+.....+..-....++.++....     ..+.+|+. +.|.++|..+.+..+.+.
T Consensus       128 ---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  183 (408)
T 4a11_B          128 ---DTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ  183 (408)
T ss_dssp             ---ETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred             ---eCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence               555554432222236788877763     26777776 689999999988777664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.46  E-value=8.7e-06  Score=60.42  Aligned_cols=103  Identities=13%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCce---E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYH---T   76 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~---~   76 (121)
                      ...+.+..|+.+|.|.+|+......+++..++ ++++|.++.+.  ++.+++|..||.|.+|+        ++...   .
T Consensus        18 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd--------~~~~~~~~~   89 (372)
T 1k8k_C           18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT--------LKGRTWKPT   89 (372)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE--------EETTEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE--------CCCCeeeee
Confidence            45678999999999999998773222677775 55899999998  45799999999999984        43333   3


Q ss_pred             EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         77 VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      +.+.....+|+++...  ++.|.+|+. +.|.+.|.++.+
T Consensus        90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence            3433345799999987  467888887 579998877765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.46  E-value=5.1e-06  Score=62.50  Aligned_cols=101  Identities=12%  Similarity=0.108  Sum_probs=74.8

Q ss_pred             CCCCeEEEEecC---CeEEEEECCcccceeeeeEe--------------cCCCEEEEEEe--CCEEEEEecCCcEEEEEc
Q psy16019          3 SVLPTMWLGSQN---GSVFVHSAVSQWRRCLHSIQ--------------LKDSVLNIVHV--QGRVVCALADGSVAIFRR   63 (121)
Q Consensus         3 ~~~~tvwiGt~~---g~I~v~~~~~~~~~~l~~~~--------------l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r   63 (121)
                      .....+..|+++   |.|.+|+..+  .+++..+.              ....|.++.+.  +..+++|..||.|.+|  
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw--  318 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW--  318 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE--
T ss_pred             CCCCEEEEEecCCCCceEEEEECCC--CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE--
Confidence            346689999999   9999999887  46666665              45799999997  5588999999999998  


Q ss_pred             CCCCCCCCCCceEE-EeC------CC---------------CCceeEeeeeCC------------EEEEEeC-CeEEEEe
Q psy16019         64 GPDGQWDLSKYHTV-TLG------LP---------------HHSVRSLAAVYN------------KVWCGYK-NKIHVVD  108 (121)
Q Consensus        64 ~~~g~wd~~~~~~i-~lg------~~---------------~~pV~~m~~v~~------------~lw~~~g-n~I~Vi~  108 (121)
                            |+...+.+ .+.      ..               ..+|+++....+            .|..|+. +.|.+.|
T Consensus       319 ------d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          319 ------DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             ------ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             ------EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence                  44444332 222      11               489999999854            5666666 6899999


Q ss_pred             CCCCc
Q psy16019        109 PKSLD  113 (121)
Q Consensus       109 ~~tl~  113 (121)
                      ..+++
T Consensus       393 ~~~g~  397 (397)
T 1sq9_A          393 EAGGK  397 (397)
T ss_dssp             EEC--
T ss_pred             cCCCC
Confidence            87753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.46  E-value=2.8e-06  Score=62.37  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=75.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCC-CCCCCceE-EEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQ-WDLSKYHT-VTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~-wd~~~~~~-i~l   79 (121)
                      .....+..|+.||.|.+|+...  .+++..++.++.|.++.+.+ ++++++..||.|.+|+...... +.+..+.. ...
T Consensus       225 ~~~~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  302 (340)
T 4aow_A          225 PDGSLCASGGKDGQAMLWDLNE--GKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS  302 (340)
T ss_dssp             TTSSEEEEEETTCEEEEEETTT--TEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC------
T ss_pred             CCCCEEEEEeCCCeEEEEEecc--CceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeec
Confidence            4566888999999999999987  57788888889999999875 4788888999999985432110 11111111 111


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .....+|.++...  ++.|..|+. +.|+|.|.+|++
T Consensus       303 ~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            1124789999887  357787777 579999988874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.45  E-value=1.1e-05  Score=61.60  Aligned_cols=106  Identities=10%  Similarity=0.159  Sum_probs=78.6

Q ss_pred             CCCCeEEEEe--------cCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEE-ecCCcEEEEEcCCCCCCCC
Q psy16019          3 SVLPTMWLGS--------QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCA-LADGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         3 ~~~~tvwiGt--------~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~-LanG~l~Vy~r~~~g~wd~   71 (121)
                      .....+++++        ++|.|++|+..+  .+.+..+..++.+.++.+..  +.+|++ ..||.|.+|+        +
T Consensus       263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d--------~  332 (433)
T 3bws_A          263 KDGKELYIAQFSASNQESGGGRLGIYSMDK--EKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD--------L  332 (433)
T ss_dssp             TTSSEEEEEEEESCTTCSCCEEEEEEETTT--TEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEE--------T
T ss_pred             CCCCEEEEEECCCCccccCCCeEEEEECCC--CcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEE--------C
Confidence            4556889888        589999999887  45666667777888888874  367766 7899999984        4


Q ss_pred             CCceEE-EeCCCCCceeEeeee--CCEEEEEeCC----------------eEEEEeCCCCcEEEEEE
Q psy16019         72 SKYHTV-TLGLPHHSVRSLAAV--YNKVWCGYKN----------------KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 ~~~~~i-~lg~~~~pV~~m~~v--~~~lw~~~gn----------------~I~Vi~~~tl~i~~~~~  119 (121)
                      +..+.+ .+. ...++.++...  ++.|++++.+                .|+++|..+++....++
T Consensus       333 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          333 KEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             TTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence            444332 222 23577888877  4679998874                89999999999888775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.45  E-value=1.6e-05  Score=60.92  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLG   80 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg   80 (121)
                      ..+..|+.+|.|++|+..+  .+....+..  .+.|+++.+..  +.+++|..||.|.+|+        +...+. ..+.
T Consensus       104 ~~l~~~~~d~~v~lw~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd--------~~~~~~~~~~~  173 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADS--GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD--------VESQTKLRTMA  173 (401)
T ss_dssp             TSEEEEEETTEEEEEETTT--CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE--------TTTCCEEEEEC
T ss_pred             CCEEEEECCCeEEEeeCCC--CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE--------CcCCeEEEEec
Confidence            4678899999999999887  345555554  57999999974  4899999999999984        444333 2443


Q ss_pred             CCCCceeEeeeeCCEEEEEeC-CeEEEEeCCC-CcEEEEE
Q psy16019         81 LPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKS-LDVIRPV  118 (121)
Q Consensus        81 ~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~t-l~i~~~~  118 (121)
                      ....+|.++...++.+..|+. +.|.+.|..+ .+....+
T Consensus       174 ~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  213 (401)
T 4aez_A          174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL  213 (401)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE
Confidence            345899999999999999888 6899999984 4444444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.45  E-value=1.3e-05  Score=60.88  Aligned_cols=106  Identities=11%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC----------CCE-EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK----------DSV-LNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLS   72 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~----------~~V-~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~   72 (121)
                      .+.||+++.+|.|+.|+..+  -+.+++.+++          ..+ ......+++||++..+|.|..|+...+. .|.  
T Consensus        53 ~~~v~~~~~~g~v~a~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~--  128 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADD--GKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ--  128 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTT--CCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred             CCEEEEEcCCCeEEEEEccC--CceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE--
Confidence            56899999999999999876  4667777773          223 3456778999999999999999765432 243  


Q ss_pred             CceEEEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         73 KYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        73 ~~~~i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                          ..++.  .........++.+|++.. +.|+.+|++|+++.-+++.
T Consensus       129 ----~~~~~--~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          129 ----TKVAG--EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             ----EECSS--CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ----EeCCC--ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence                23333  222233456899999987 5799999999998877653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.45  E-value=7.5e-06  Score=60.31  Aligned_cols=106  Identities=11%  Similarity=0.124  Sum_probs=75.7

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-----CEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-----GRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .....+..|+++|.|++|+...  .+......++..|.++.+..     +.+++|..||.|.+|+......  .......
T Consensus       178 ~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~  253 (357)
T 3i2n_A          178 QEERVVCAGYDNGDIKLFDLRN--MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP--TKGFASV  253 (357)
T ss_dssp             -CCCEEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET--TTEEEEE
T ss_pred             CCCCEEEEEccCCeEEEEECcc--CceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc--ccceeee
Confidence            4567899999999999999987  45555567789999999964     7899999999999996543211  1111111


Q ss_pred             EeCCCCCceeEeeeeC-C--EEEEEeC-CeEEEEeCCCC
Q psy16019         78 TLGLPHHSVRSLAAVY-N--KVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~-~--~lw~~~g-n~I~Vi~~~tl  112 (121)
                      .+.....+|+++.... +  .++.|+. +.|.+.|..+.
T Consensus       254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            2222348999999985 3  3666666 58999998764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.44  E-value=8.9e-06  Score=60.18  Aligned_cols=106  Identities=14%  Similarity=0.162  Sum_probs=76.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV----QGRVVCALADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      +.....+..|+.||.|.||+......+++.+++ +.++|.++.+.    ++.++.|..||+|.+|+.... .|.    .+
T Consensus        18 s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~-~~~----~~   92 (297)
T 2pm7_B           18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG-RWS----QI   92 (297)
T ss_dssp             CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS-CBC----CC
T ss_pred             CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC-ceE----EE
Confidence            345678899999999999998753345666774 55899999985    457888999999999865421 111    12


Q ss_pred             EEeCCCCCceeEeeeeC----CEEEEEeC-CeEEEEeCCCC
Q psy16019         77 VTLGLPHHSVRSLAAVY----NKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~----~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      ..+.....+|+++....    ..|..|+. +.|.+.|..+.
T Consensus        93 ~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           93 AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            23333347999999873    46777777 68999998765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.43  E-value=1.1e-05  Score=59.26  Aligned_cols=99  Identities=11%  Similarity=0.071  Sum_probs=75.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE--eC--CEEEEEecCCcEEEEEcCCCCCCCCCCc---e
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQ--GRVVCALADGSVAIFRRGPDGQWDLSKY---H   75 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~   75 (121)
                      .....+..|+.||.|.+|+..+  .+.+....++++|.++.+  ..  ..+++|..||.|.+|        |+...   .
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw--------d~~~~~~~~  165 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSS--NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW--------DTRSSNPMM  165 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE--------CSSCSSCSE
T ss_pred             cCCCEEEEEcCCCcEEEEEcCC--CCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE--------ECCCCcEEE
Confidence            3556899999999999999887  455666677899999998  43  358888999999998        44333   2


Q ss_pred             EEEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcE
Q psy16019         76 TVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      .+...   .++.++....+.+.+++. +.+.+++..+...
T Consensus       166 ~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  202 (368)
T 3mmy_A          166 VLQLP---ERCYCADVIYPMAVVATAERGLIVYQLENQPS  202 (368)
T ss_dssp             EEECS---SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred             EEecC---CCceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence            33332   578888888888888777 6899999877543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.43  E-value=2.3e-05  Score=59.45  Aligned_cols=106  Identities=20%  Similarity=0.196  Sum_probs=76.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|+.||.|.+|+..+  .+++..++ +.++|.++.+..  ..++.|..||+|.+|        |+...+.+ .
T Consensus       149 ~~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw--------d~~~~~~~~~  218 (420)
T 3vl1_A          149 PSGEALISSSQDMQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW--------ECGTGTTIHT  218 (420)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE--------ETTTTEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEeCCC--CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe--------ECCCCceeEE
Confidence            3456899999999999999987  45666775 568999999974  479999999999998        44444332 2


Q ss_pred             eC---CCCCceeEeee---------------------e--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         79 LG---LPHHSVRSLAA---------------------V--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg---~~~~pV~~m~~---------------------v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      +.   .+..+|.++..                     .  ++.|.+|+. +.|.++|..+.+....+
T Consensus       219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  285 (420)
T 3vl1_A          219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL  285 (420)
T ss_dssp             ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc
Confidence            22   12345555443                     3  356777777 57999999998876665

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.42  E-value=2.6e-05  Score=57.13  Aligned_cols=103  Identities=10%  Similarity=0.020  Sum_probs=75.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      ..+..|..|+.|.+|+...  .+++..+. ..++|.++.+..  ..+++|..||+|.+|        |+...+.+..-..
T Consensus       186 ~~~~s~~~d~~i~i~d~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw--------d~~~~~~~~~~~~  255 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW--------DLNEGKHLYTLDG  255 (340)
T ss_dssp             CEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEE--------ETTTTEEEEEEEC
T ss_pred             cEEEEEcCCCEEEEEECCC--CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEE--------EeccCceeeeecC
Confidence            4566788999999999887  45666664 458999999874  478889999999998        5555554322222


Q ss_pred             CCceeEeeeeC-CE-EEEEeCCeEEEEeCCCCcEEEEE
Q psy16019         83 HHSVRSLAAVY-NK-VWCGYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        83 ~~pV~~m~~v~-~~-lw~~~gn~I~Vi~~~tl~i~~~~  118 (121)
                      ..+|.++.... +. +.++..+.|.+.|.++......+
T Consensus       256 ~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          256 GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEec
Confidence            36899888874 33 44455589999999988776655

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.41  E-value=3.4e-06  Score=62.18  Aligned_cols=107  Identities=19%  Similarity=0.207  Sum_probs=77.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-----CCEEEEEE------eCCEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-----DSVLNIVH------VQGRVVCALADGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-----~~V~~i~~------~~~~v~v~LanG~l~Vy~r~~~g~wd~   71 (121)
                      ...+.+..|+.||.|.+|+.... ++.+..++.+     ..|.++.+      .++.+++|..||.|.+|        |+
T Consensus       127 ~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~--------d~  197 (357)
T 3i2n_A          127 EGAPEIVTGSRDGTVKVWDPRQK-DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF--------DL  197 (357)
T ss_dssp             -CCCEEEEEETTSCEEEECTTSC-SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE--------ET
T ss_pred             CCccEEEEEeCCCeEEEEeCCCC-CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE--------EC
Confidence            45668999999999999998873 1245555432     38888883      46688889999999998        55


Q ss_pred             CCceEEEeCCCCCceeEeeee-----CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         72 SKYHTVTLGLPHHSVRSLAAV-----YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        72 ~~~~~i~lg~~~~pV~~m~~v-----~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      ...+.+.......+|.++...     ++.+++|+. +.|.++|..+.+..+.+
T Consensus       198 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  250 (357)
T 3i2n_A          198 RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF  250 (357)
T ss_dssp             TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred             ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence            555554332224799999986     377888876 68999998876654443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.41  E-value=2.6e-05  Score=59.38  Aligned_cols=104  Identities=15%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg   80 (121)
                      .+.+..|+.||.|.+|+..+  .+++..+. +++.|.++.+.  ++.+++|..||+|.+|        |+...+.+ .+.
T Consensus       210 g~~l~sgs~Dg~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw--------d~~~~~~~~~~~  279 (354)
T 2pbi_B          210 GNTFVSGGCDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY--------DLRADREVAIYS  279 (354)
T ss_dssp             CCEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCC--CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE--------ECCCCcEEEEEc
Confidence            46899999999999999887  56777775 45899999996  4588999999999998        55444333 222


Q ss_pred             C--CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         81 L--PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        81 ~--~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      .  ...++.++...  +..|.+|+. +.|.+.|..+.+....+
T Consensus       280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence            2  23578888776  577888887 58999999988876655

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.40  E-value=8.1e-06  Score=65.11  Aligned_cols=100  Identities=10%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH   83 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~   83 (121)
                      .+.|++| ++|.|++|++.+..  ...+. .+..+|.+++...+.++++++||+|.+|        |+++....++.   
T Consensus        97 ~~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~--------dl~~~~~~~~~---  162 (388)
T 1xip_A           97 GDQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSAL--------DLRTKSTKQLA---  162 (388)
T ss_dssp             TTEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEE--------ETTTCCEEEEE---
T ss_pred             CCEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecCCCEEEEECCCCEEEE--------EccCCcccccc---
Confidence            4689999 88999999988743  22222 3345688999888789999999999998        55555455553   


Q ss_pred             CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcE--EEEE
Q psy16019         84 HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDV--IRPV  118 (121)
Q Consensus        84 ~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i--~~~~  118 (121)
                      ..|+|++...+.+.+|++ ++|.++++++.++  ++.+
T Consensus       163 ~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          163 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEEcCCceEEEEcCCcEEEEcCCCcccccccee
Confidence            489999999877999999 6899999998887  5555

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.40  E-value=5.1e-06  Score=63.86  Aligned_cols=107  Identities=14%  Similarity=0.138  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEEEeCC------EEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHVQG------RVVCALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~~~~~------~v~v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      .....+..|++||.|.+|+...  .+++.++.+  ..+|.++.....      .+++|..||+|.+|+..        ..
T Consensus       224 ~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~--------~~  293 (437)
T 3gre_A          224 EECCVLILGTTRGIIDIWDIRF--NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV--------KG  293 (437)
T ss_dssp             TTSCEEEEEETTSCEEEEETTT--TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT--------TT
T ss_pred             CCCCEEEEEcCCCeEEEEEcCC--ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC--------CC
Confidence            4567899999999999999987  577777754  368999977643      78888899999998543        22


Q ss_pred             eE---EE----------------------e-C-CCCCceeEeeeeCCE-EEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         75 HT---VT----------------------L-G-LPHHSVRSLAAVYNK-VWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        75 ~~---i~----------------------l-g-~~~~pV~~m~~v~~~-lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.   +.                      + + ....+|+++...++. |..|+. +.|++.|..+.+..+.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEe
Confidence            22   11                      0 0 023579999998765 444444 789999999988776654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.39  E-value=6.9e-06  Score=60.45  Aligned_cols=104  Identities=13%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             CCeEEEEecCCeEEEEECCccc-------ceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQW-------RRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~-------~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .+.+..|+.||.|.+|+.....       .+++..+.+++.|.++.+.++.+++|..||.|.+|+....+.   ......
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~  188 (342)
T 1yfq_A          112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---DNGTIE  188 (342)
T ss_dssp             TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---CCCEEE
T ss_pred             CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---ccceee
Confidence            5688999999999999976410       245666677899999999999999999999999996543110   112223


Q ss_pred             EeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCC
Q psy16019         78 TLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      ... ...+|+++....   +.+++|+. +.|.+.+..+.
T Consensus       189 ~~~-~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          189 ESG-LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             ECS-CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             ecC-CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            332 247899998864   67777777 57888777665

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.39  E-value=3.2e-06  Score=63.60  Aligned_cols=106  Identities=7%  Similarity=-0.041  Sum_probs=73.9

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE--ecCCCEEEEEEeCC--EEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLKDSVLNIVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~~~V~~i~~~~~--~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ....+..|+.||.|.+|+...  .+++...  ....+|.++.++.+  .+.+|..||.|.+|+......    .+..+..
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~----~~~~~~~  211 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYED--DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ----ASSRFPV  211 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSS--SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS----CCEECCC
T ss_pred             CCCEEEEEeCCCcEEEEECCC--CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC----CccEEec
Confidence            445777899999999999887  3444443  23457999998743  566678999999985432210    0123333


Q ss_pred             CCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                      + ...||+++...  +..|..|+.+.|.+.|..+.+..+
T Consensus       212 ~-h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          212 D-EEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             C-TTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCB
T ss_pred             c-CCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcce
Confidence            1 24899999987  467888887899999999876543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.39  E-value=2.5e-05  Score=59.34  Aligned_cols=106  Identities=12%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPH   83 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~~   83 (121)
                      .+.+|+|+.+|.|+.++..+  -+.+++...+. ...+...++.+|++..+|.|..|+...+. .|..+.     ++.  
T Consensus       239 ~~~v~~~~~~g~l~~~d~~t--G~~~w~~~~~~-~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~--  308 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRS--GQIMWKRELGS-VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSD-----LLH--  308 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTT--CCEEEEECCCC-EEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECT-----TTT--
T ss_pred             CCEEEEEecCcEEEEEECCC--CcEEeeccCCC-CCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecc-----cCC--
Confidence            46899999999999999876  35667665543 45677789999999999999999765432 243221     111  


Q ss_pred             CceeEeeeeCCEEEEEeCC-eEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSLAAVYNKVWCGYKN-KIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m~~v~~~lw~~~gn-~I~Vi~~~tl~i~~~~~~  120 (121)
                      ..+....+.++.||++..+ .++++|++|+++..++++
T Consensus       309 ~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          309 RLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             SCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            2334455678999999985 799999999999877764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.39  E-value=2e-05  Score=61.13  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC----------------------CEEEEEecCCcEEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ----------------------GRVVCALADGSVAI   60 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~----------------------~~v~v~LanG~l~V   60 (121)
                      ....+..|+.||.|.+|+...  .++...+. ++..|.|+.+..                      ..+++|..||+|.+
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVAT--KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCC--CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            456788999999999999877  46666664 457999999864                      36899999999999


Q ss_pred             EEcCCCCCCCCCCceE-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         61 FRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        61 y~r~~~g~wd~~~~~~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      |        |+..... ..+.....+|+++...  +..|..|+. +.|++.|..+.+..+.+.
T Consensus       323 w--------d~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          323 W--------DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             E--------ETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             E--------ECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            8        5544433 2332224799999887  356777776 579999999988777764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.38  E-value=2.7e-05  Score=59.88  Aligned_cols=105  Identities=15%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~   78 (121)
                      .....+..|++||.|.||+...  .+.+..++ +.+.|.++.+.  ++.++.|..||++.+|        |+...+. ..
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iw--------d~~~~~~~~~  202 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW--------DLRTGQCSLT  202 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE--------ETTTTEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEE--------ECCCCeeEEE
Confidence            3456788999999999999887  46666665 45799999987  4589999999999998        5544433 22


Q ss_pred             eCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      +.. ..+++++....   +.|..|+. +.|.+.|..+.+..+.+
T Consensus       203 ~~~-~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          203 LSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL  245 (393)
T ss_dssp             EEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence            322 25788888763   55666666 68999999998877665

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.38  E-value=5.2e-05  Score=57.68  Aligned_cols=104  Identities=14%  Similarity=0.115  Sum_probs=78.2

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      ....+..|+.||.|.+|+..+  .+++.++. +...|.++....    +.++.|..||+|.+|        |+...+.+ 
T Consensus       165 ~~~~l~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w--------d~~~~~~~~  234 (354)
T 2pbi_B          165 SDMQILTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW--------DMRSGQCVQ  234 (354)
T ss_dssp             SSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE--------ETTTCCEEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE--------ECCCCcEEE
Confidence            345788999999999999987  56777776 457899988753    578999999999998        44444332 


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      .+.....+|+++...  ++.|..|+. +.|.+.|..+.+....
T Consensus       235 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI  277 (354)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            343334899999887  467777776 5899999988765443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.37  E-value=9.7e-06  Score=61.92  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceE--
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHT--   76 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~--   76 (121)
                      +....+..|+.||.|.+|+...  .+++..++- .+.|.++.+..   ..+..+..||+|.+|        |+...+.  
T Consensus       149 pdg~~l~sgs~dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w--------d~~~~~~~~  218 (357)
T 4g56_B          149 SDGTQAVSGGKDFSVKVWDLSQ--KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW--------DTRKPKPAT  218 (357)
T ss_dssp             SSSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC--------CTTSSSCBC
T ss_pred             CCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE--------ECCCCceee
Confidence            4566888999999999999887  577777764 47999999863   357788899999996        5555433  


Q ss_pred             -EEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         77 -VTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        77 -i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                       +.......++.++....   ..|.+|+. +.|.++|..+.+..+.++
T Consensus       219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred             eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence             23333357889988762   45677776 579999999998887765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.36  E-value=3.1e-05  Score=57.37  Aligned_cols=117  Identities=10%  Similarity=0.029  Sum_probs=82.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccce-eeeeEe--cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCC--------CCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRR-CLHSIQ--LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPD--------GQW   69 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~-~l~~~~--l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~--------g~w   69 (121)
                      .....+..|+++|.|.+|+....... ....+.  +.+.|.++.+..  +.+++|..||.|.+|+-...        ..|
T Consensus       106 ~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  185 (372)
T 1k8k_C          106 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW  185 (372)
T ss_dssp             TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccccc
Confidence            45668999999999999997763221 233332  347999999974  47888999999999974211        122


Q ss_pred             CC--CCc-eEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         70 DL--SKY-HTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        70 d~--~~~-~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..  ... ....+.....+|.++...  ++.|++|+. +.|.++|..+.+..+.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          186 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             ccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            21  122 233444445799999886  467888887 589999999999888775

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.36  E-value=3.8e-05  Score=56.89  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=78.0

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVHV----QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      ...+..|+.||.|.+|+....  ++...+.  ....|.++.+.    +..++.|..||+|.+|        |+...+.+ 
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iW--------d~~~~~~~~  222 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQS--TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW--------DYQTKSCVA  222 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCS--SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEE--------ETTTTEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC--CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEE--------eCCCCccce
Confidence            457889999999999998763  3333333  23578888775    3479999999999997        56555443 


Q ss_pred             EeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         78 TLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++.....+|.++....  ..|..|+. +.|.+.|..+++.++.++.
T Consensus       223 ~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~  268 (304)
T 2ynn_A          223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV  268 (304)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC
Confidence            3433348999988774  56777776 5899999999999988753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.35  E-value=1.6e-05  Score=60.94  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      ..+..|++||.|.+|+...  .+++++++- .++|.++.+..+   .+..|..||+|.||        |+...+++.+..
T Consensus       228 ~~l~sg~~dg~v~~wd~~~--~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw--------d~~~~~~~~~~~  297 (344)
T 4gqb_B          228 EVFVFGDENGTVSLVDTKS--TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL--------DSSLSELFRSQA  297 (344)
T ss_dssp             TEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE--------CTTCCEEEEECC
T ss_pred             cceEEeccCCcEEEEECCC--CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE--------ECCCCcEEEEcC
Confidence            4567899999999999987  577888864 589999999742   46678899999997        666777776654


Q ss_pred             CCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcE
Q psy16019         82 PHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDV  114 (121)
Q Consensus        82 ~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i  114 (121)
                      -..+|+++...  +..|.+++|  +.|++-+..+-.+
T Consensus       298 H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          298 HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            45899999986  455666555  6898888766544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=2e-05  Score=61.37  Aligned_cols=109  Identities=15%  Similarity=0.063  Sum_probs=80.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccce--eeeeEe-cCCCEEEEEEeCC-----EEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRR--CLHSIQ-LKDSVLNIVHVQG-----RVVCALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~--~l~~~~-l~~~V~~i~~~~~-----~v~v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      .....+..|+.+|.|++|+..+....  +...+. ..+.|.++.+..+     .+++|..||+|.+|+        +...
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd--------~~~~  230 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH--------YPQC  230 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE--------ESCT
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE--------CCCC
Confidence            45678999999999999998763211  333443 4589999998865     789999999999984        3333


Q ss_pred             eEE-E-eCCCCCceeEeeee-CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         75 HTV-T-LGLPHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        75 ~~i-~-lg~~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.+ . +.....+|+++... ++.|+.|+. +.|.+.|..+++..+.++
T Consensus       231 ~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             ceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            222 2 21224799999886 567777776 689999999999888876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.35  E-value=4.9e-06  Score=61.35  Aligned_cols=101  Identities=8%  Similarity=0.107  Sum_probs=67.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCC-CEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      .+.+|+|+.+|.|+.|+...   +.+++...+. .+.++... ++.+|+|..+|.|..|+....-.|      ...+.. 
T Consensus       107 ~~~l~v~t~~~~l~~~d~~g---~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~------~~~~~~-  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTDG---TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKW------RFKTND-  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTTS---CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTTSCEEE------EEECSS-
T ss_pred             CCEEEEEecCCEEEEEcCCC---CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeE------EEecCC-
Confidence            56899999999999999763   3455555553 34445554 778999999999999855410112      123333 


Q ss_pred             CCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019         83 HHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        83 ~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~~~  118 (121)
                       ..+.++... ++.||+|+ +.|+.+| .+++...++
T Consensus       177 -~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~  210 (330)
T 3hxj_A          177 -AITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNF  210 (330)
T ss_dssp             -CCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEE
T ss_pred             -CceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEE
Confidence             456666663 67888888 8888888 566555443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1.4e-05  Score=67.05  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCCCCCCCCCCc--
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV----QGRVVCALADGSVAIFRRGPDGQWDLSKY--   74 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~~g~wd~~~~--   74 (121)
                      +...+.+..|+.||.|.||+......+.+.+++ +.++|.++.+.    .+.+++|..||+|.+|+        +...  
T Consensus        18 s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd--------~~~~~~   89 (753)
T 3jro_A           18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK--------EENGRW   89 (753)
T ss_dssp             CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE--------EETTEE
T ss_pred             CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE--------CCCCcc
Confidence            345668999999999999998753345666665 55899999986    56899999999999984        3333  


Q ss_pred             -eEEEeCCCCCceeEeeee----CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         75 -HTVTLGLPHHSVRSLAAV----YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        75 -~~i~lg~~~~pV~~m~~v----~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                       ....+.....+|+|+...    ++.+..|+. +.|.+.|..+..
T Consensus        90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence             233444345899999987    457777777 689999998763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.33  E-value=4.5e-05  Score=56.25  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=76.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-----CCEEEEEEe--CCEEEEEecC-CcEEEEEcCCCCCCCCCCc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-----DSVLNIVHV--QGRVVCALAD-GSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-----~~V~~i~~~--~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~   74 (121)
                      .....++++.+++.|++|+..+  .+.++.+..+     ..+.++.+.  ++++|++..+ |.|.+|+....     +..
T Consensus       194 ~dg~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-----~~~  266 (353)
T 3vgz_A          194 SEGKRLYTTNADGELITIDTAD--NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-----NIL  266 (353)
T ss_dssp             TTTTEEEEECTTSEEEEEETTT--TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-----CEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCC--CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-----cEE
Confidence            4567899999999999999887  4666677662     356677776  5579998876 89999854321     112


Q ss_pred             eEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         75 HTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +.+.++.   | ..+...  ++.+|++++  +.|.++|..++++...++.
T Consensus       267 ~~~~~~~---~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~  312 (353)
T 3vgz_A          267 AKVAAPE---S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT  312 (353)
T ss_dssp             EEEECSS---C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEcCC---C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence            3355544   3 234444  578999985  7899999999999887764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.32  E-value=5.7e-05  Score=58.32  Aligned_cols=98  Identities=16%  Similarity=0.227  Sum_probs=75.7

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      ..+.|-+|. |+.|+||++.+  .++++.+++.   +.|+|+.+..  +.+++|..||+|.+|        |++..+.+ 
T Consensus       115 ~~n~lAvgl-d~tV~lWd~~t--g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iW--------d~~~~~~~~  183 (420)
T 4gga_A          115 SGNVLAVAL-DNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW--------DVQQQKRLR  183 (420)
T ss_dssp             TTSEEEEEE-TTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEEE
T ss_pred             CCCEEEEEe-CCEEEEEECCC--CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEE--------EcCCCcEEE
Confidence            356788887 79999999887  4566666653   5899999974  589999999999997        56555543 


Q ss_pred             EeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCC
Q psy16019         78 TLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      .+.....++.|+...+..|..|+. ..+.+.|..+.
T Consensus       184 ~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccc
Confidence            343335889999999999988888 57888887763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.32  E-value=1.4e-05  Score=61.09  Aligned_cols=110  Identities=17%  Similarity=0.091  Sum_probs=77.6

Q ss_pred             eEEEEecCCeEEEEECCcccc--eeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCC-CCC-CCceEEE
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWR--RCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQ-WDL-SKYHTVT   78 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~--~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~-wd~-~~~~~i~   78 (121)
                      .+|.|+.+|.|.||+....-+  +....+. +.++|+++.+..   +.+++|..||+|.+|+...++. ... .....+.
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~  128 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE  128 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE
T ss_pred             EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec
Confidence            344588999999999866322  2333443 458999999964   6899999999999997665432 111 1223344


Q ss_pred             eCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      -..  .+|+++....   +.|..|+. +.|.+.|..+.+..+.+
T Consensus       129 ~h~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A          129 GHT--KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             CCS--SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCC--CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence            333  8999999884   35666666 68999999999888776

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.31  E-value=4e-05  Score=63.12  Aligned_cols=107  Identities=14%  Similarity=0.104  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-E
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-V   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i   77 (121)
                      ++..+.+..|+.+|.|.||+..+  .+.+.++. .+++|.++.+..  +.+.+|..||.|.||+.        ++.+. .
T Consensus        22 sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~--------~~~~~~~   91 (814)
T 3mkq_A           22 HPTEPWVLTTLYSGRVEIWNYET--QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY--------NTGEKVV   91 (814)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET--------TTCCEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCC--CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC--------CCCcEEE
Confidence            45677899999999999999877  46677776 458999999874  57999999999999843        33322 2


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCC-cEEEEE
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL-DVIRPV  118 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl-~i~~~~  118 (121)
                      .+.....+|+++...  +..|..|+. +.|.+.|..+. ...+.+
T Consensus        92 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  136 (814)
T 3mkq_A           92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (814)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred             EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence            333234899999988  356887777 58999998876 554444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.31  E-value=2.6e-05  Score=57.68  Aligned_cols=104  Identities=15%  Similarity=0.090  Sum_probs=75.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ...+..|+.||.|.+|+..+...+.+..+. .+++|.++.+..    +.+++|..||.|.+|+.....     ....+.+
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~  143 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----TTSPIII  143 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS-----CCCEEEE
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC-----ceeeEEe
Confidence            578999999999999998874223555554 458999999984    479999999999999654322     1223333


Q ss_pred             CCCCCceeEeeeeC---------------CEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GLPHHSVRSLAAVY---------------NKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~~~pV~~m~~v~---------------~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .....+|+++....               +.+.+|+. +.|++.|..+.+
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence            33348999998764               56777776 589999987754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.30  E-value=3.9e-05  Score=63.13  Aligned_cols=105  Identities=14%  Similarity=0.123  Sum_probs=80.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      ++.+..|+.||.|.+|+...  .++..++. +.+.|.++.++.  ..+..|..||+|.+|        |+.+.+.+.--.
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~--~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iw--------d~~~~~~~~~~~  600 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW--------DLAEGKKLYSLE  600 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEE--------ETTTTEEEECCB
T ss_pred             cceEEEEeCCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE--------ECCCCceEEEec
Confidence            45789999999999999887  45666664 458999999974  478888999999997        565555442222


Q ss_pred             CCCceeEeeeeC--CEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019         82 PHHSVRSLAAVY--NKVWCGYKNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        82 ~~~pV~~m~~v~--~~lw~~~gn~I~Vi~~~tl~i~~~~~  119 (121)
                      ...+|+++....  ..|.++..+.|.+.|.++.++.+.+.
T Consensus       601 ~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          601 ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhc
Confidence            247899988874  44566666899999999999887764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.30  E-value=1.2e-05  Score=62.65  Aligned_cols=101  Identities=11%  Similarity=0.072  Sum_probs=71.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE--EE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT--VT   78 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~--i~   78 (121)
                      ...|-.|+.||.|.||+.......+...+ .+.++|++|.++   .+.++.|..||+|.+|        |++....  +.
T Consensus       132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw--------d~~~~~~~~~~  203 (435)
T 4e54_B          132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ--------DFKGNILRVFA  203 (435)
T ss_dssp             TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE--------ETTSCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe--------eccCCceeEEe
Confidence            44788999999999999876423333333 355899999986   3589999999999997        5544433  22


Q ss_pred             eCC-CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         79 LGL-PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        79 lg~-~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      -+. ...++.++...  ++.|..|+. +.|++.|.++.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          204 SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred             ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence            222 24567788776  467777777 589999987543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.26  E-value=2.8e-05  Score=59.38  Aligned_cols=97  Identities=13%  Similarity=0.002  Sum_probs=70.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ...+..|++||.|.+|+...  .++++++..+ ++|.++.+..   ..+..|..||+|.||        |++..+.+..-
T Consensus       239 ~~~la~g~~d~~i~~wd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw--------d~~~~~~~~~~  308 (357)
T 4g56_B          239 DDTFACGDETGNVSLVNIKN--PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL--------DADFSEVFRDL  308 (357)
T ss_dssp             TTEEEEEESSSCEEEEESSC--GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEE--------CTTSCEEEEEC
T ss_pred             cceEEEeecccceeEEECCC--CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEE--------ECCCCcEeEEC
Confidence            34677899999999999887  4667777644 7999999873   246678889999997        66666665432


Q ss_pred             CCCCceeEeeee--C-CEEEEEeC-CeEEEEeCCC
Q psy16019         81 LPHHSVRSLAAV--Y-NKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        81 ~~~~pV~~m~~v--~-~~lw~~~g-n~I~Vi~~~t  111 (121)
                      .-..+|++++..  + +.|..|+. +.|++.+..+
T Consensus       309 ~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          309 SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            224899999976  3 44554444 6899999765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.26  E-value=8.5e-05  Score=58.73  Aligned_cols=105  Identities=16%  Similarity=0.154  Sum_probs=76.7

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .....+..|++||.|.+|+...   +.++.+. ++++|+++.+..  ..+.++..||+|.+|+.        +......+
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~--------~~~~~~~~  463 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR--------NGQLLQTL  463 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET--------TSCEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC--------CCCEEEEE
Confidence            4456788999999999999654   5566664 458999999874  47888999999999853        33333333


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .....+|+++...  ++.|..|+. ..|++.|. +.+..+.|+
T Consensus       464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~  505 (577)
T 2ymu_A          464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT  505 (577)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence            3334899999987  356777777 57999995 677777665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.26  E-value=6.1e-05  Score=56.23  Aligned_cols=101  Identities=9%  Similarity=0.012  Sum_probs=75.9

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-----CEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-----GRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      ....+..|+.||.|.+|+...  .+....+.++..+.++.+..     ..+++|..||.|.+|+....     ....  .
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-----~~~~--~  181 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNT--LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-----SCSH--I  181 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-----CCCE--E
T ss_pred             CCcEEEEEeCCCeEEEeeCCC--CccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-----ceee--e
Confidence            345788999999999999988  56778888889999999864     27999999999999954321     1122  3


Q ss_pred             eCCCCCceeEeeeeC--C-EEEEEeC-CeEEEEeCCCCc
Q psy16019         79 LGLPHHSVRSLAAVY--N-KVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        79 lg~~~~pV~~m~~v~--~-~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      +.....+|+++....  + -+.+|+. +.|.+.|..+.+
T Consensus       182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred             ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence            333348999999885  3 3666766 689999997754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.25  E-value=4e-06  Score=62.97  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .....+..|++||.|.+|+......+++..++ +.++|.++.+..  ++++.|..||+|.+|+......|    .....+
T Consensus        21 ~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~----~~~~~~   96 (377)
T 3dwl_C           21 SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW----KQTLVL   96 (377)
T ss_dssp             SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC----CCEEEC
T ss_pred             CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce----eeeeEe
Confidence            45667888999999999998863225666664 458999999974  47888999999999844322100    123444


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .....+|+++...  ++.|..|+. +.|.+.|.++.+
T Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  133 (377)
T 3dwl_C           97 LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN  133 (377)
T ss_dssp             CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred             cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence            4445899999987  466777777 579999988876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.24  E-value=1.3e-05  Score=60.42  Aligned_cols=116  Identities=16%  Similarity=0.037  Sum_probs=80.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCccc--ceeeeeEe-cCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQW--RRCLHSIQ-LKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~--~~~l~~~~-l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      .....+..|++||.|.+|+.....  .+++..+. +.++|.++.+.   ++.+++|..||+|.+|+...... ....+..
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~  155 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE-SPSNYTP  155 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS-CTTTCCC
T ss_pred             CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc-ccccccc
Confidence            455688999999999999987621  23455554 55899999997   45788999999999985543220 0000012


Q ss_pred             EEe---CCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         77 VTL---GLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        77 i~l---g~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.+   .....+|+++....   ..+..|+. +.|.+.|..+.+....++
T Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  205 (416)
T 2pm9_A          156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS  205 (416)
T ss_dssp             BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC
T ss_pred             cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe
Confidence            222   22247999999884   35666655 579999999998887765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.23  E-value=1.8e-05  Score=61.60  Aligned_cols=108  Identities=15%  Similarity=0.093  Sum_probs=75.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ....+..|++||.|.+|+...   +++.+++. .+.|.++.++.   ..+..|..||+|.+|.......    ....+..
T Consensus       220 ~~~~l~~g~~dg~i~~wd~~~---~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~----~~~~~~~  292 (435)
T 4e54_B          220 SSRMVVTGDNVGNVILLNMDG---KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG----KASFLYS  292 (435)
T ss_dssp             TTTEEEEECSSSBEEEEESSS---CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS----SSCCSBC
T ss_pred             CCCEEEEEeCCCcEeeeccCc---ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc----cceEEEe
Confidence            456889999999999999875   45566654 58999999873   2466788999999985432210    0011111


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      .....+|+++...  ++.|..|+. +.|.+.|..+++....+
T Consensus       293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            1114799999876  467877777 68999999998876654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.22  E-value=3.6e-05  Score=58.05  Aligned_cols=108  Identities=11%  Similarity=0.109  Sum_probs=79.3

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec-------CCCEEEEEEeCC---EEEEEecCC---cEEEEEcCCCCCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-------KDSVLNIVHVQG---RVVCALADG---SVAIFRRGPDGQWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-------~~~V~~i~~~~~---~v~v~LanG---~l~Vy~r~~~g~wd~   71 (121)
                      ...+..|+.+|.|.+|+...  .+++..+..       ..+|.++.+..+   .++++..||   .|.+|+.....    
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----  251 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKA--KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----  251 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTT--TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----
T ss_pred             CcEEEEEcCCCCEEEEECCC--CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----
Confidence            46788999999999999987  466666655       568999999853   688888888   99998654321    


Q ss_pred             CCceEEEeCCCCCceeEeeee---CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         72 SKYHTVTLGLPHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 ~~~~~i~lg~~~~pV~~m~~v---~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .....+.. ....+|+++...   ++.|..|+. +.|.+.|..+.+..+.++
T Consensus       252 ~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          252 TPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP  302 (416)
T ss_dssp             SCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred             CCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence            11122221 223799999885   356777766 689999999999888775

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=7.2e-05  Score=58.25  Aligned_cols=104  Identities=16%  Similarity=0.134  Sum_probs=75.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecC--------------------------CCEEEEEEe--CCEEEEEe-c
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--------------------------DSVLNIVHV--QGRVVCAL-A   54 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--------------------------~~V~~i~~~--~~~v~v~L-a   54 (121)
                      ....+..|+.||.|.+|+...  .+++..++++                          .+|.+|.+.  +..++++. .
T Consensus       251 d~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          251 KDYLLLSAGGDDKIFAWDWKT--GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             STTEEEEEESSSEEEEEETTT--CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCC--CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence            456889999999999999887  4556666532                          468888887  45788888 8


Q ss_pred             CCcEEEEEc--CCCCCCCCCCceEEEeCCCCCceeEeeeeCCEEEEEeCC-----------eEEEEeCCCCcE
Q psy16019         55 DGSVAIFRR--GPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKN-----------KIHVVDPKSLDV  114 (121)
Q Consensus        55 nG~l~Vy~r--~~~g~wd~~~~~~i~lg~~~~pV~~m~~v~~~lw~~~gn-----------~I~Vi~~~tl~i  114 (121)
                      ||.|.+|+.  ..++  .+.....+...   .+|+++....+.++++.++           +|+.++.++.+.
T Consensus       329 d~~i~iw~~~~~~~~--~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~  396 (450)
T 2vdu_B          329 TKCIIILEMSEKQKG--DLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSF  396 (450)
T ss_dssp             CSEEEEEEECSSSTT--CEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred             CCeEEEEEeccCCCC--ceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence            999999976  2221  11222233332   6899999999999998765           788888877655

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.21  E-value=0.0002  Score=51.80  Aligned_cols=97  Identities=16%  Similarity=0.232  Sum_probs=71.3

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC---CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .+.|-+|. |+.|.||+..+  .++++.++++   +.|+|+.+..  +.+++|..||+|.+|        |++..+.+ .
T Consensus        36 ~~~lAvg~-D~tV~iWd~~t--g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw--------~~~~~~~~~~  104 (318)
T 4ggc_A           36 GNVLAVAL-DNSVYLWSASS--GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW--------DVQQQKRLRN  104 (318)
T ss_dssp             TSEEEEEE-TTEEEEEETTT--CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEE--------ETTTTEEEEE
T ss_pred             CCEEEEEe-CCEEEEEECCC--CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEe--------ecCCceeEEE
Confidence            45666776 79999999887  4667776653   5899999974  588999999999997        55555443 2


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCC
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      +.....++.++...+..+..|+. ..+.+.+..+.
T Consensus       105 ~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A          105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             ecCccceEEEeecCCCEEEEEecCCceEeeecCCC
Confidence            22223788888888898888887 46777766654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.20  E-value=2.6e-05  Score=67.29  Aligned_cols=103  Identities=13%  Similarity=0.161  Sum_probs=78.2

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCE-EEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGR-VVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~-v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      +..+..+-.|+.||.|.||+...  .+++..+...++|.++.+..++ ++.+..||+|.+|        |++..+.+ .+
T Consensus        26 spdg~~lAsgs~Dg~I~lw~~~~--~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lW--------d~~~~~~~~~~   95 (902)
T 2oaj_A           26 DFTQNLLAIATVTGEVHIYGQQQ--VEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVL--------SLYSQKVLTTV   95 (902)
T ss_dssp             ETTTTEEEEEETTSEEEEECSTT--CEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEE--------ETTTCSEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCC--cEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEE--------ECCCCcEEEEE
Confidence            34567899999999999999765  3444444556899999998765 8888999999997        55444332 33


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      .. +.+|+++...  ++.|..|+. +.|.+.|.++.+..
T Consensus        96 ~~-~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           96 FV-PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             EC-SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cC-CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            22 3689999887  478888888 58999999988763

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.20  E-value=0.00027  Score=53.07  Aligned_cols=105  Identities=6%  Similarity=-0.026  Sum_probs=74.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ....+..|+.||.|.+|+..+  .+++.++. ++++|.++.+.  +..+++|..||+|.+|+        +.........
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd--------~~~~~~~~~~  156 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRT--GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN--------ILGECKFSSA  156 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTS--SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE--------SSSCEEEECC
T ss_pred             CCCEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe--------ccCCceeeee
Confidence            445678899999999999887  46677775 56899999997  45799999999999984        3333333332


Q ss_pred             ---CCCCceeEeeeeC------------CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         81 ---LPHHSVRSLAAVY------------NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ---~~~~pV~~m~~v~------------~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                         ....+|+|+....            ..+..|+. +.|.+.| .+.+....|+
T Consensus       157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~  210 (343)
T 2xzm_R          157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK  210 (343)
T ss_dssp             TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE
T ss_pred             cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc
Confidence               2246788887663            35666665 6899999 4555555543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.19  E-value=0.00011  Score=60.53  Aligned_cols=107  Identities=11%  Similarity=0.068  Sum_probs=81.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      +....+..|+.||.|.||+..+  .+++.++. +.+.|+++.++.  .+++.|..||+|.+|        |........+
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw--------d~~~~~~~~~  509 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW--------NTLGECKYTI  509 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE--------CTTSCEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE--------ECCCCcceee
Confidence            4556788999999999999887  45666664 568999999874  479999999999998        4444444433


Q ss_pred             CC----CCCceeEeeeeC----CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         80 GL----PHHSVRSLAAVY----NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~----~~~pV~~m~~v~----~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..    ...+|+|+....    ..+..|+. +.|.+.|..+.+..+.+.
T Consensus       510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~  558 (694)
T 3dm0_A          510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA  558 (694)
T ss_dssp             CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            21    246799998874    35676666 689999999998887764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.19  E-value=1.9e-05  Score=58.14  Aligned_cols=101  Identities=13%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      .+.+|+|+  +.|+.|+ .+  .+.+++...+ ..+.++.... +.+|+|..+|.|..|.......|      ....+. 
T Consensus       187 ~g~l~v~t--~~l~~~d-~~--g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~------~~~~~~-  254 (330)
T 3hxj_A          187 DGTIYFGS--DKVYAIN-PD--GTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKW------RFKTGK-  254 (330)
T ss_dssp             TCCEEEES--SSEEEEC-TT--SCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEE------EEECSS-
T ss_pred             CCEEEEEe--CEEEEEC-CC--CcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeE------EeeCCC-
Confidence            45566666  6666666 22  1334444443 3455555543 37777777777777732111112      122222 


Q ss_pred             CCceeEeeee-CCEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAV-YNKVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v-~~~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                       ..+.++... ++.||+|..+ .++.+|+ +++....+.
T Consensus       255 -~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          255 -RIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             -CCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred             -CccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE
Confidence             223344444 6889998886 8999986 666665554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.19  E-value=9.5e-05  Score=54.49  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             CCCCeEEEEec-------CCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEec-CCcEEEEEcCCCCCCCCC
Q psy16019          3 SVLPTMWLGSQ-------NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALA-DGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         3 ~~~~tvwiGt~-------~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~La-nG~l~Vy~r~~~g~wd~~   72 (121)
                      ...+.+|+++.       ++.|++|+..+  .+.++.+..+..+..+....  +++|++.. +|.|.+|+.....     
T Consensus        50 ~dg~~l~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-----  122 (353)
T 3vgz_A           50 QQENALWLATSQSRKLDKGGVVYRLDPVT--LEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE-----  122 (353)
T ss_dssp             TTTTEEEEEECCCTTTEESEEEEEECTTT--CCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC-----
T ss_pred             CCCCEEEEEcCCCcCCCCCccEEEEcCCC--CeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe-----
Confidence            44568888884       57899999887  46677777777677777764  46888766 5889998443211     


Q ss_pred             CceEEEeCCCCC-------ceeEeeee--CCEEEEEe---CCeEEEEeCCCCcEEEEEE
Q psy16019         73 KYHTVTLGLPHH-------SVRSLAAV--YNKVWCGY---KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        73 ~~~~i~lg~~~~-------pV~~m~~v--~~~lw~~~---gn~I~Vi~~~tl~i~~~~~  119 (121)
                      ....+.++....       .++++...  ++.+|++.   .+.|+++|++++++.+.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~  181 (353)
T 3vgz_A          123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ  181 (353)
T ss_dssp             EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence            113355544222       25777776  57899987   3679999999999988875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.19  E-value=8.2e-05  Score=60.71  Aligned_cols=102  Identities=12%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCc---eEEEeCCC
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKY---HTVTLGLP   82 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~~i~lg~~   82 (121)
                      +-.+..+|.|.+|+...  .+++++++....+.++.+.  ..++|++..||+|.+|+...      ...   ..+..|. 
T Consensus       152 ~vs~~~d~~V~v~D~~t--~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~------~t~~~~~~i~~g~-  222 (543)
T 1nir_A          152 SVTLRDAGQIALVDGDS--KKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWA------KEPTKVAEIKIGI-  222 (543)
T ss_dssp             EEEEGGGTEEEEEETTT--CCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTS------SSCEEEEEEECCS-
T ss_pred             EEEEcCCCeEEEEECCC--ceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcC------CCCcEEEEEecCC-
Confidence            33455789999999877  5778888877668888776  45899999999999994410      233   3355555 


Q ss_pred             CCceeEeeee------CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         83 HHSVRSLAAV------YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        83 ~~pV~~m~~v------~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                        ..+.+++.      ++.||+++.  +.|.|+|..|+++.+.+++
T Consensus       223 --~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~  266 (543)
T 1nir_A          223 --EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST  266 (543)
T ss_dssp             --EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             --CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc
Confidence              34777765      478999883  8999999999999988764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.18  E-value=6.4e-05  Score=57.31  Aligned_cols=111  Identities=9%  Similarity=0.057  Sum_probs=74.7

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE--------ecCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI--------QLKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--------~l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~   72 (121)
                      ....+..| .||.|.+|+.... .+++..+        .+.+.|.++.++.   +.+++|..||+|.+|+........ .
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~  264 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEIT-DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD-R  264 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEE-EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC-T
T ss_pred             CCCEEEEe-CCCeEEEEECCCC-CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc-c
Confidence            44567777 8999999998842 2333322        3447899999985   579999999999999654322100 1


Q ss_pred             CceEEEeCCCCC------------ceeEeeee--CCEEEEEeCCeEEEEeCCC-CcEEEEEE
Q psy16019         73 KYHTVTLGLPHH------------SVRSLAAV--YNKVWCGYKNKIHVVDPKS-LDVIRPVT  119 (121)
Q Consensus        73 ~~~~i~lg~~~~------------pV~~m~~v--~~~lw~~~gn~I~Vi~~~t-l~i~~~~~  119 (121)
                      ..+.  +..+..            +|+++...  +..|.+|+.+.|.+.|..+ .+..+.++
T Consensus       265 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          265 HSKL--FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             TCEE--ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE
T ss_pred             eeeE--eccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee
Confidence            1122  333223            89999988  4567777778999999987 66665554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.18  E-value=0.00015  Score=57.34  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      ++....+-.|++||.|.||+...   +++++++ +.++|+++.+..  .++..|..||+|.||+        .+...+..
T Consensus        25 spdg~~las~~~d~~v~iWd~~~---~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd--------~~~~~~~~   93 (577)
T 2ymu_A           25 SPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--------RNGQLLQT   93 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTTS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE--------TTSCEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCC---CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE--------CCCCEEEE
Confidence            45567888999999999999644   6677776 458999999974  4788888999999984        33344445


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCC
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      +.....+|+++...  ++.|..++. ..+.+.+....
T Consensus        94 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~  130 (577)
T 2ymu_A           94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ  130 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC
T ss_pred             EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccc
Confidence            54445899999987  467777777 46777765543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.17  E-value=0.00017  Score=54.88  Aligned_cols=102  Identities=10%  Similarity=0.054  Sum_probs=73.7

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEe-cCCcEEEEEcCCCCCCCCCCceEEEeCCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVTLGLP   82 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i~lg~~   82 (121)
                      .+..|+.+|.|.+|+...  .+.+.++..+ ..+.++.+..  +.+|++. .||.|.+|        |+...+.+..-..
T Consensus       183 ~~~s~~~d~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~--------d~~~~~~~~~~~~  252 (433)
T 3bws_A          183 LWVSQMQANAVHVFDLKT--LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI--------DRKTKLEIRKTDK  252 (433)
T ss_dssp             EEEEEGGGTEEEEEETTT--CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE--------ETTTTEEEEECCC
T ss_pred             EEEEECCCCEEEEEECCC--ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE--------ECCCCcEEEEecC
Confidence            445666889999999876  4566777644 6899999874  4687766 68999998        5555444432222


Q ss_pred             CCceeEeeee--CCEEEEEe---------CCeEEEEeCCCCcEEEEE
Q psy16019         83 HHSVRSLAAV--YNKVWCGY---------KNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        83 ~~pV~~m~~v--~~~lw~~~---------gn~I~Vi~~~tl~i~~~~  118 (121)
                      ...+.++...  ++.||+++         .+.|+++|..+.++.+.+
T Consensus       253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~  299 (433)
T 3bws_A          253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI  299 (433)
T ss_dssp             CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence            3567888876  46888887         258999999999887665

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=4.2e-05  Score=64.18  Aligned_cols=104  Identities=19%  Similarity=0.273  Sum_probs=73.0

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeee-eEecC-CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe--
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLH-SIQLK-DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL--   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~-~~~l~-~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l--   79 (121)
                      .+.+|+||+++.|+.|+......+... .-.++ ..|.+|... ++.+++|..+|-|..|+...        -+...+  
T Consensus       373 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~--------~~~~~~~~  444 (781)
T 3v9f_A          373 QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL--------KKFQIIEL  444 (781)
T ss_dssp             TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS--------CEEEECCS
T ss_pred             CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC--------CcEEEecc
Confidence            478999999999999997652111111 01344 589999876 78999999877788884332        222222  


Q ss_pred             -CCCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         80 -GLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        80 -g~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                       +.+...|++|... ++.||+|..+.++.+|+.+.+.++
T Consensus       445 ~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          445 EKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIH  483 (781)
T ss_dssp             TTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCE
T ss_pred             CCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEe
Confidence             2234789998877 589999999999999998876654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.17  E-value=4.9e-05  Score=56.75  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe----CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV----QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~----~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .....+..|+.||.|.||+......+.+..++ ++++|.++.+.    .+.++.|..||+|.+|+... +.|    ....
T Consensus        23 ~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~-~~~----~~~~   97 (316)
T 3bg1_A           23 YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN-GTW----EKSH   97 (316)
T ss_dssp             GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS-SCC----CEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC-Ccc----eEEE
Confidence            34567889999999999998763233556665 56899999985    46788999999999984321 111    1334


Q ss_pred             EeCCCCCceeEeeeeC----CEEEEEeC-CeEEEEeCCCC
Q psy16019         78 TLGLPHHSVRSLAAVY----NKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~----~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      .+.....+|+++....    ..|.+|+. +.|.+.|..+.
T Consensus        98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            4543347999999874    35666666 57999887764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.17  E-value=8.7e-05  Score=58.62  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             eeeeeEecCCCEEEEEEeCCEEEEEec-CCcEEEEEcCCCCCCCCCCceE--EEeCCCCCceeEeeee--CCEEEEEeC-
Q psy16019         28 RCLHSIQLKDSVLNIVHVQGRVVCALA-DGSVAIFRRGPDGQWDLSKYHT--VTLGLPHHSVRSLAAV--YNKVWCGYK-  101 (121)
Q Consensus        28 ~~l~~~~l~~~V~~i~~~~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~--i~lg~~~~pV~~m~~v--~~~lw~~~g-  101 (121)
                      +.+..++++.++.++.+.++.+++|.. ||.|.+|        |+.....  ..+.....+|++|...  ++.|..|+. 
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~--------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  509 (615)
T 1pgu_A          438 DIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF--------KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM  509 (615)
T ss_dssp             CEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE--------ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE--------ECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence            456677778899999999889999999 9999998        4444444  3333345899999986  477888877 


Q ss_pred             CeEEEEeCCCCcEEEEE
Q psy16019        102 NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus       102 n~I~Vi~~~tl~i~~~~  118 (121)
                      +.|++.|..+.+..+.+
T Consensus       510 g~i~iw~~~~~~~~~~~  526 (615)
T 1pgu_A          510 GKILLYDLQSREVKTSR  526 (615)
T ss_dssp             SCEEEEETTTTEEEECC
T ss_pred             CeEEEeeCCCCcceeEe
Confidence            68999999999887765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.16  E-value=0.00018  Score=53.01  Aligned_cols=104  Identities=15%  Similarity=0.059  Sum_probs=72.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ...+..|+.||.|.+|+......+++..+. .+++|.++.+..    ..+.+|..||+|.+|+....+.+   ....+.-
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---~~~~~~~  143 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---SPIIIDA  143 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---CCEEEEC
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---eeeeeec
Confidence            457888999999999998763223444554 457999999974    47899999999999976543221   1222322


Q ss_pred             CCCCCceeEeeeeC---------------CEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GLPHHSVRSLAAVY---------------NKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~~~pV~~m~~v~---------------~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .  ..+|+++....               +.|..|+. +.|++.|..+.+
T Consensus       144 h--~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          144 H--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             C--SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             c--cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence            2  37888887764               36777776 589999987755

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.14  E-value=0.00014  Score=62.94  Aligned_cols=108  Identities=12%  Similarity=0.033  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      +.....+..|+.||.|.||+..+  .+++.++.- ..+|.++.+..    ..++.|..||.|.+|        |+.+.+.
T Consensus       666 s~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw--------d~~~~~~  735 (1249)
T 3sfz_A          666 SSDDSYIATCSADKKVKIWDSAT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--------DLNQKEC  735 (1249)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE--------ETTSSSE
T ss_pred             ecCCCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE--------ECCCcch
Confidence            34566889999999999999987  467777754 47999999964    367788999999998        4444433


Q ss_pred             -EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         77 -VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        77 -i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                       -.+.....+|+++...  ++.|..|+. +.|.+.|..+.+..+.+.
T Consensus       736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  782 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN  782 (1249)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred             hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceec
Confidence             2443345899999887  467777777 689999999988777765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.14  E-value=0.00011  Score=63.55  Aligned_cols=108  Identities=17%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-   77 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-   77 (121)
                      +.....+..|+.||.|.||+..+  .+++.+++ +.++|+++.+..  ..+.+|..||+|.||        |+.+.+.+ 
T Consensus       624 s~~~~~l~s~~~d~~i~vw~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw--------d~~~~~~~~  693 (1249)
T 3sfz_A          624 SQDGQRIASCGADKTLQVFKAET--GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--------DSATGKLVH  693 (1249)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE--------ETTTCCEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCC--CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE--------ECCCCceEE
Confidence            34567888999999999999887  46677775 458999999974  478899999999998        44444332 


Q ss_pred             EeCCCCCceeEeeeeC--C--EEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         78 TLGLPHHSVRSLAAVY--N--KVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~--~--~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+.....+|.|+....  +  .+..|+. +.|.+.|..+.+....+.
T Consensus       694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~  740 (1249)
T 3sfz_A          694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF  740 (1249)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC
T ss_pred             EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec
Confidence            3333348999999874  3  3555555 589999999998877653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.13  E-value=0.00012  Score=52.77  Aligned_cols=115  Identities=8%  Similarity=0.013  Sum_probs=78.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC------EEEEEecCCcEEEEEcCCCC----------
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG------RVVCALADGSVAIFRRGPDG----------   67 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~------~v~v~LanG~l~Vy~r~~~g----------   67 (121)
                      ...+..|+.+|.+.++.......+.+..+. ++++|.++.+..+      .+++|..||.|.+|+.....          
T Consensus       182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  261 (351)
T 3f3f_A          182 PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT  261 (351)
T ss_dssp             CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------
T ss_pred             CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccc
Confidence            568899999999977776663223455554 4579999999866      58888999999999765321          


Q ss_pred             ----------------------------CCCCCCceEE-EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         68 ----------------------------QWDLSKYHTV-TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        68 ----------------------------~wd~~~~~~i-~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                                                  .|+......+ .+.....+|+++...  ++.|..|+. +.|.+.|..+.+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             -----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             ceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence                                        1121122222 333335799999987  355777776 57999999987666


Q ss_pred             EEEE
Q psy16019        116 RPVT  119 (121)
Q Consensus       116 ~~~~  119 (121)
                      +.+.
T Consensus       342 ~~~~  345 (351)
T 3f3f_A          342 KCMS  345 (351)
T ss_dssp             EEEE
T ss_pred             hhee
Confidence            5553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.13  E-value=5.9e-05  Score=63.39  Aligned_cols=106  Identities=12%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             CCeEEEEecCCeEEEEECCcc-cceeeeeE-----ecC-CCEEEEEEe-CCE-EEEEecCCcEEEEEcCCCCCCCCCCce
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQ-WRRCLHSI-----QLK-DSVLNIVHV-QGR-VVCALADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~-~~~~l~~~-----~l~-~~V~~i~~~-~~~-v~v~LanG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      ++.+|+||++|.|+.|+.... .+.-...-     .++ ..|.+|... ++. +++|..+|-|..|+...+..      .
T Consensus       367 ~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------~  440 (795)
T 4a2l_A          367 DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------E  440 (795)
T ss_dssp             TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------E
T ss_pred             CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------E
Confidence            568999999999999997652 11111110     233 579999875 567 99999988899996543221      1


Q ss_pred             EEEeC---CCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         76 TVTLG---LPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        76 ~i~lg---~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                      .+...   -+...|++|... ++.||+|..+.++.+|+.+.+.++
T Consensus       441 ~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          441 NFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTT  485 (795)
T ss_dssp             EECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEE
T ss_pred             EeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEE
Confidence            11111   123678998876 589999999999999999876653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.11  E-value=0.00031  Score=52.65  Aligned_cols=103  Identities=9%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEe---cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ---LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLG   80 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~---l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg   80 (121)
                      .+..|+.||.|.+|+......+....+.   +.++|.++.++.  +.+.+|..||+|.+|+...... +...... ..+.
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~-~~~~~~~~~~~~  104 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIE  104 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------CCCEEEEEEC
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC-ccccceeEEEEc
Confidence            6788999999999998763223444442   457999999874  5788899999999996542211 0011222 2343


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-CeEEEEeCC
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~  110 (121)
                      ....+|+++...  ++.|..|+. +.|++.|..
T Consensus       105 ~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X          105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             ----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence            334799999987  356776666 589999984

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.11  E-value=0.00011  Score=60.39  Aligned_cols=110  Identities=13%  Similarity=0.131  Sum_probs=79.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      ...+.+..|++||.|.+|+.... ++....+. .+.+|.++.++.   +.+++|..||+|.+|+....     .....+.
T Consensus       107 ~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----~~~~~~~  180 (814)
T 3mkq_A          107 PTKPYVLSGSDDLTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----TPNFTLT  180 (814)
T ss_dssp             SSSSEEEEEETTSEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----SCSEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCC-ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----cceeEEe
Confidence            45668999999999999998763 23445554 558999999975   47888999999999954321     1122233


Q ss_pred             eCCCCCceeEeeee----CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAV----YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v----~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+. ..+++++...    +..|..|+. +.|.+.|..+.+..+.+.
T Consensus       181 ~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          181 TGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             CCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             cCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence            322 3788888875    456777776 589999999998877765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00012  Score=54.87  Aligned_cols=104  Identities=9%  Similarity=0.012  Sum_probs=72.5

Q ss_pred             EEEEecCCeEEEEECCccc-------ceeeeeEecC--CCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          8 MWLGSQNGSVFVHSAVSQW-------RRCLHSIQLK--DSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~-------~~~l~~~~l~--~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      +..|+.||.|.+|+.....       .+.++.+.++  ++|.++.++.    +.+..|..||+|.+|        |+...
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w--------d~~~~  159 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ--------SYEDD  159 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE--------ESSSS
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE--------ECCCC
Confidence            7778889999888766421       2335555544  7899999865    467779999999998        55544


Q ss_pred             eEEEe--CCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEE-EEEE
Q psy16019         75 HTVTL--GLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVI-RPVT  119 (121)
Q Consensus        75 ~~i~l--g~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~-~~~~  119 (121)
                      +.+.+  +....+|+|+....  ..|..|+. +.|.+.|..+.+.. ..|+
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~  210 (343)
T 3lrv_A          160 SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP  210 (343)
T ss_dssp             CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC
T ss_pred             cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe
Confidence            44432  22245899999884  45665555 68999999998876 5554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=6e-05  Score=65.01  Aligned_cols=102  Identities=13%  Similarity=0.187  Sum_probs=79.9

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE--Ee---
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV--TL---   79 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i--~l---   79 (121)
                      .+..|+.||.|.+|+...  .+++.++..++.|+++.+.  .+.+++|..||+|.+|+        ++..+..  .+   
T Consensus        71 ~L~S~s~D~~v~lWd~~~--~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd--------~~~~~~~~~~i~~~  140 (902)
T 2oaj_A           71 YLVVINAKDTVYVLSLYS--QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYD--------IDRDQLSSFKLDNL  140 (902)
T ss_dssp             EEEEEETTCEEEEEETTT--CSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEE--------TTTTEEEEEEECCH
T ss_pred             EEEEEECcCeEEEEECCC--CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEE--------CCCCccccceeccc
Confidence            588899999999999987  5778888888999999987  45899999999999984        4443332  11   


Q ss_pred             -------CCCCCceeEeeeeC---CEEEEEeCC-eEEEEeCCCCcEEEEEE
Q psy16019         80 -------GLPHHSVRSLAAVY---NKVWCGYKN-KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 -------g~~~~pV~~m~~v~---~~lw~~~gn-~I~Vi~~~tl~i~~~~~  119 (121)
                             .....||+++....   +.+.+|+.+ .| +.|.++.+..+.|+
T Consensus       141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~  190 (902)
T 2oaj_A          141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI  190 (902)
T ss_dssp             HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred             cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence                   11247999999985   467888875 56 99999998887764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.09  E-value=0.00031  Score=53.86  Aligned_cols=100  Identities=15%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|+.||.|.+|+..+  .++...+..++.|.++....   ..+++|..||+|.+|+        +.....+ .
T Consensus       175 p~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd--------~~~~~~~~~  244 (393)
T 1erj_A          175 PSGDKLVSGSGDRTVRIWDLRT--GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD--------SETGFLVER  244 (393)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEE--------TTTCCEEEE
T ss_pred             CCCCEEEEecCCCcEEEEECCC--CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEE--------CCCCcEEEe
Confidence            3456889999999999999887  56777788888999999864   5788899999999984        3333222 2


Q ss_pred             e-------CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCC
Q psy16019         79 L-------GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        79 l-------g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      +       .....+|.++...  ++.|..|+. +.|.+.|..+.
T Consensus       245 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             ecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            2       1124789999887  466777776 58999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.09  E-value=9.2e-05  Score=53.94  Aligned_cols=103  Identities=15%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             CCCCeEEEEe-cCCeEEEEECCcccceeeeeEecCC------CEEEEEEe--CCEEEEEe------------cCCcEEEE
Q psy16019          3 SVLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKD------SVLNIVHV--QGRVVCAL------------ADGSVAIF   61 (121)
Q Consensus         3 ~~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~------~V~~i~~~--~~~v~v~L------------anG~l~Vy   61 (121)
                      .....+++.. .++.|++|+..+  .+.++.+.++.      .+.++.+.  ++++|++.            .++.|.+|
T Consensus        43 ~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~  120 (337)
T 1pby_B           43 PGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCCCEEEEEeCCCCeEEEEECCC--CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEE
Confidence            3445677665 578999999877  45666676654      66677776  34788886            57999998


Q ss_pred             EcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019         62 RRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        62 ~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~~~~  119 (121)
                      +        ++..+.   +..+.   .+.++...  ++.|+++ .+.|+++|..++++.+.++
T Consensus       121 d--------~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~  171 (337)
T 1pby_B          121 D--------AETLSRRKAFEAPR---QITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             E--------TTTTEEEEEEECCS---SCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEEC
T ss_pred             E--------CCCCcEEEEEeCCC---CcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeee
Confidence            4        444333   34433   45566655  4668888 6889999999999887765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.08  E-value=0.00018  Score=55.01  Aligned_cols=106  Identities=17%  Similarity=0.213  Sum_probs=77.3

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEE-e
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVT-L   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~-l   79 (121)
                      ..+.+..|+.||.|.+|+.... .+++..+. +.++|.++.+..  ..+..|..||+|.+|        |+...+.+. +
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lw--------d~~~~~~~~~~  287 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRIT-SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF--------DMRTGHQLQVY  287 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTT-CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEE--------ETTTTEEEEEE
T ss_pred             CCCEEEEEECCCeEEEEECCCC-CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEE--------ECCCCcEEEEe
Confidence            3457888999999999998742 34556664 558999999974  478889999999998        555544432 2


Q ss_pred             CC-C------CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         80 GL-P------HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        80 g~-~------~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      .. +      ...|+++...  ++.|.+|+. +.|++.|..+.+....+
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            11 1      1247787766  577888887 58999999988877665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.08  E-value=0.00015  Score=59.98  Aligned_cols=106  Identities=10%  Similarity=0.070  Sum_probs=78.7

Q ss_pred             eEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCC
Q psy16019          7 TMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH   83 (121)
Q Consensus         7 tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~   83 (121)
                      .+++.. +++.|.+++...  .+.+.++.....+..+...  +.++||+..||.|.+|+....   .......+..|.  
T Consensus       168 ~~~V~~~~~~~V~viD~~t--~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~---t~~~v~~i~~G~--  240 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGST--YEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK---EPTTVAEIKIGS--  240 (567)
T ss_dssp             EEEEEETTTTEEEEEETTT--CCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSS---SCCEEEEEECCS--
T ss_pred             eEEEEeCCCCeEEEEECCC--CeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCC---CCcEeEEEecCC--
Confidence            455444 589999999887  5778888888788888886  458999999999999943200   011123466666  


Q ss_pred             CceeEeeee------CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSLAAV------YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m~~v------~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .| +.|.+.      ++.+|+++.  ++|.|||+.|+++.+.+.+
T Consensus       241 ~P-~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~  284 (567)
T 1qks_A          241 EA-RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  284 (567)
T ss_dssp             EE-EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             CC-ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence            55 566665      578999876  8999999999999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.00014  Score=61.03  Aligned_cols=111  Identities=20%  Similarity=0.240  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccc---e--eeeeEecC-----CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWR---R--CLHSIQLK-----DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~---~--~l~~~~l~-----~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~   71 (121)
                      ++.+..+..|++||.|.||++.+..-   +  .+++++..     +.|.++.+.++.+.++..|+++-+|+......  .
T Consensus       138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~--~  215 (588)
T 2j04_A          138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH--Q  215 (588)
T ss_dssp             CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS--C
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc--c
Confidence            46778999999999999999887310   0  24665432     59999999987788889999999984432210  0


Q ss_pred             CCceEEEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEE
Q psy16019         72 SKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVI  115 (121)
Q Consensus        72 ~~~~~i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~  115 (121)
                      ...+.+. +.....|.+++.+++.|..++.+.|++.|..+.+++
T Consensus       216 ~~~~tL~-~~h~~~V~svaFsg~~LASa~~~tIkLWd~~~~~~~  258 (588)
T 2j04_A          216 PVSRMIQ-NASRRKITDLKIVDYKVVLTCPGYVHKIDLKNYSIS  258 (588)
T ss_dssp             CCEEEEE-CCCSSCCCCEEEETTEEEEECSSEEEEEETTTTEEE
T ss_pred             cceeeec-ccccCcEEEEEEECCEEEEEeCCeEEEEECCCCeEE
Confidence            0112332 122378999999888999998899999999998874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.07  E-value=2e-05  Score=59.06  Aligned_cols=111  Identities=10%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccc-eeeeeEe--cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCC--------CCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWR-RCLHSIQ--LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPD--------GQW   69 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~-~~l~~~~--l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~--------g~w   69 (121)
                      .....+..|++||.|.+|+...... .....+.  +.+.|.++.+..  ..+++|..||+|.+|+....        ..|
T Consensus       110 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  189 (377)
T 3dwl_C          110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW  189 (377)
T ss_dssp             TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSS
T ss_pred             CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccc
Confidence            3456889999999999999887321 1356665  568999999975  47889999999999986422        123


Q ss_pred             CCCCc--eE-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcE
Q psy16019         70 DLSKY--HT-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        70 d~~~~--~~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      ...-+  +. ..+ ....+|+++...  ++.|..|+. +.|.+.|..+.+.
T Consensus       190 ~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          190 GSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             CSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             ccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            22211  12 233 335789999987  456777777 5899999988875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.07  E-value=0.00025  Score=54.26  Aligned_cols=113  Identities=12%  Similarity=0.091  Sum_probs=75.3

Q ss_pred             CCCeEEEEe--cCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCC-------------
Q psy16019          4 VLPTMWLGS--QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDG-------------   67 (121)
Q Consensus         4 ~~~tvwiGt--~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g-------------   67 (121)
                      ....+.+|+  +|+.|.||+..+  .+++..++.+..|.++.+.+ ++.++..+++.+.+|....+.             
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~--~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSD--LTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTT--TEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCC--CcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCC
Confidence            344566666  689999999988  56777888888999999874 355555566666666543221             


Q ss_pred             ---------------------------CCCCCCceE-----EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCC
Q psy16019         68 ---------------------------QWDLSKYHT-----VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        68 ---------------------------~wd~~~~~~-----i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl  112 (121)
                                                 .||+.....     ..+.....+|+||...  ++.|..|+. +.|.|.|.+++
T Consensus       222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~  301 (365)
T 4h5i_A          222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL  301 (365)
T ss_dssp             EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence                                       022111110     1122224689998877  466777777 58999999999


Q ss_pred             cEEEEE
Q psy16019        113 DVIRPV  118 (121)
Q Consensus       113 ~i~~~~  118 (121)
                      +..+.+
T Consensus       302 ~~~~~~  307 (365)
T 4h5i_A          302 SMSKIF  307 (365)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            988775

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.07  E-value=0.00016  Score=54.47  Aligned_cols=107  Identities=10%  Similarity=0.114  Sum_probs=76.7

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|+.||.+.+|+......+++..++ +.++|.++.+.  ++.++.|..||+|.+|+.....     ....+ .
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~  145 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-----EYECVSV  145 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-----CEEEEEE
T ss_pred             CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-----CeEEEEE
Confidence            45568899999999999997764335566664 45899999997  4578889999999998654321     12222 3


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      +.....+|+++...  ++.|..|+. +.|.+.|.++.+.
T Consensus       146 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~  184 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW  184 (345)
T ss_dssp             ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE
T ss_pred             ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE
Confidence            33335789999877  356777776 5799998877653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.05  E-value=0.00061  Score=49.21  Aligned_cols=103  Identities=13%  Similarity=0.054  Sum_probs=77.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      .....+..|+.||.|.+|+..+  .++++.++- ...+.++......+..|..+|.+.++.....      ......+..
T Consensus        77 ~~~~~l~sgs~Dg~v~iw~~~~--~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~------~~~~~~~~~  148 (318)
T 4ggc_A           77 KEGNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA------EHHVATLSG  148 (318)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS------SCEEEEEEC
T ss_pred             CCCCEEEEEECCCcEEEeecCC--ceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCC------ceeEEEEcC
Confidence            4567889999999999999988  577777754 4789999999999999999999999854321      122222322


Q ss_pred             CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         82 PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        82 ~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      ...++.++...  ++.|..|+. +.|.+.|..+.+
T Consensus       149 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            23778777766  467777777 579999998865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.04  E-value=0.00035  Score=52.38  Aligned_cols=101  Identities=11%  Similarity=0.021  Sum_probs=69.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeC------------CEEEEEecCCcEEEEEcCCCCCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ------------GRVVCALADGSVAIFRRGPDGQW   69 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~------------~~v~v~LanG~l~Vy~r~~~g~w   69 (121)
                      .....+..|+.||.|.+|+............ ...+.|.++.+..            ..+..|..||+|.+|+.      
T Consensus       128 p~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~------  201 (343)
T 2xzm_R          128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT------  201 (343)
T ss_dssp             SSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET------
T ss_pred             CCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC------
Confidence            4556789999999999999875211111111 2447899999875            46888999999999852      


Q ss_pred             CCCCceEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCC
Q psy16019         70 DLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS  111 (121)
Q Consensus        70 d~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~t  111 (121)
                        .......+.....+|.++...  ++.|..|+. +.|++.|..+
T Consensus       202 --~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          202 --NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             --TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             --CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence              222222332234899999887  467777777 5899999843

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.02  E-value=0.00029  Score=53.80  Aligned_cols=106  Identities=9%  Similarity=0.086  Sum_probs=75.2

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe------cCCCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ------LKDSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~------l~~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      ..+..|+.||.|.+|+...  .+++..+.      +...|.++.+.   .+.++.|..||+|.+|.....      ....
T Consensus       171 ~~l~s~s~D~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~------~~~~  242 (380)
T 3iz6_a          171 TRLITGSGDQTCVLWDVTT--GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT------SRAV  242 (380)
T ss_dssp             SCEEEECTTSCEEEECTTT--CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT------CCCC
T ss_pred             CEEEEECCCCcEEEEEcCC--CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC------Ccce
Confidence            3588999999999999887  34444441      33689999884   467888999999999843211      1112


Q ss_pred             EEeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         77 VTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..+.....+|.++....  +.|..|+. +.|.+.|..+.+..+.+.
T Consensus       243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            23333347999998873  56766666 589999999988776553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.01  E-value=5.1e-05  Score=61.93  Aligned_cols=110  Identities=20%  Similarity=0.223  Sum_probs=80.8

Q ss_pred             CeEEEEe--cCCeEEEEECCcc-----cceeeeeEecC-CCEEEEEEeC--CEEEEEe-------cCCcEEEEEcCCCCC
Q psy16019          6 PTMWLGS--QNGSVFVHSAVSQ-----WRRCLHSIQLK-DSVLNIVHVQ--GRVVCAL-------ADGSVAIFRRGPDGQ   68 (121)
Q Consensus         6 ~tvwiGt--~~g~I~v~~~~~~-----~~~~l~~~~l~-~~V~~i~~~~--~~v~v~L-------anG~l~Vy~r~~~g~   68 (121)
                      ..+|+..  .++.|.||+....     .-+++++++.+ ..++.|+.+.  .++||+.       .+++|.||+..... 
T Consensus       382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~-  460 (543)
T 1nir_A          382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD-  460 (543)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT-
T ss_pred             ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC-
Confidence            5677765  4799999997651     13578888876 5777888774  4899987       36799999665432 


Q ss_pred             CCCCCceEEEeC------CCCCceeEeeee--CCEEEEEeC------CeEEEEeCCCCcEEEEEE
Q psy16019         69 WDLSKYHTVTLG------LPHHSVRSLAAV--YNKVWCGYK------NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        69 wd~~~~~~i~lg------~~~~pV~~m~~v--~~~lw~~~g------n~I~Vi~~~tl~i~~~~~  119 (121)
                         ..++.+.++      .....+..+.+.  +++||+++.      +.|.|+|.+|++++++++
T Consensus       461 ---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          461 ---AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             ---SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ---CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence               123566553      334677788777  699999853      789999999999999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.01  E-value=0.00011  Score=61.68  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=74.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC----CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ----GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~----~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      ...+..|+.||.|.+|+......+....+. +.++|.++.+..    +.+++|..||+|.+|+.....     ......+
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-----~~~~~~~  141 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----TTSPIII  141 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-----CCCCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-----CcceeEe
Confidence            568999999999999998774223555554 458999999984    589999999999999654332     1122233


Q ss_pred             CCCCCceeEeeeeC---------------CEEEEEeC-CeEEEEeCCCC
Q psy16019         80 GLPHHSVRSLAAVY---------------NKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        80 g~~~~pV~~m~~v~---------------~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      .....+|+++....               +.+..|+. +.|.+.|..+.
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence            33347899998764               45777776 67999998776

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.00  E-value=8.3e-05  Score=57.76  Aligned_cols=106  Identities=8%  Similarity=-0.000  Sum_probs=73.0

Q ss_pred             CCeEEEEecCCeEEEEECCcc--------cceeeeeEe-cCCCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCC--CC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQ--------WRRCLHSIQ-LKDSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQ--WD   70 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~--------~~~~l~~~~-l~~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~--wd   70 (121)
                      ...+..|+++|.|+||+....        ..+.+.++. +.+.|+++.+..+   .+++|..||+|.+|+....+.  +.
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  220 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV  220 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence            347889999999999998752        123455554 4478999998753   788999999999997654321  11


Q ss_pred             CCCceEEEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCC
Q psy16019         71 LSKYHTVTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        71 ~~~~~~i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      +.....  +.....+|.++....   ..+..++. +.|+++|..+.
T Consensus       221 ~~~~~~--~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~  264 (430)
T 2xyi_A          221 IDAKNI--FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN  264 (430)
T ss_dssp             EECSEE--ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred             ecccee--ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            111222  222247899999873   45556655 68999999987

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.00  E-value=0.00045  Score=52.04  Aligned_cols=105  Identities=13%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeE--ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCce-EE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI--QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYH-TV   77 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~--~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~-~i   77 (121)
                      .....+-.|+.||.|.||+.......+...+  .+.++|.++.+..  ++++.|..||++.+|....+      ... ..
T Consensus        26 p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~------~~~~~~   99 (345)
T 3fm0_A           26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD------DFECVT   99 (345)
T ss_dssp             TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-------EEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC------CeEEEE
Confidence            4456788899999999999876321222222  2457999999974  57899999999999854321      112 23


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      .+.....+|+++...  ++.|..|+. +.|++.|..+.+
T Consensus       100 ~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A          100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED  138 (345)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred             EccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence            444445899999987  466777776 589999987653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.00  E-value=0.00062  Score=55.42  Aligned_cols=103  Identities=13%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeC--
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLG--   80 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg--   80 (121)
                      .+..|++|+.|.+|+...  .+++.++. +.+.|.++.+..  ..+..|..||+|.+|+.        .+.+.+ .+.  
T Consensus       162 ~l~s~s~D~~v~lwd~~~--~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~--------~~g~~~~~~~~~  231 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG--------VDGTKTGVFEDD  231 (611)
T ss_dssp             EEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET--------TTCCEEEECBCT
T ss_pred             EEEEEeCCCeEEEEECCC--CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC--------CCCcEeeeeccc
Confidence            588899999999999766  46667774 558999999974  46788999999999853        332222 231  


Q ss_pred             -----CCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         81 -----LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 -----~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                           ....+|.++...  ++.|..|+. +.|.+.|..+++..+.++
T Consensus       232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          232 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  278 (611)
T ss_dssp             TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence                 124789999987  356776666 589999999999888765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.99  E-value=5.5e-05  Score=59.90  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             CCCeEE----EEecCCeEEEEECCccc------ceeeeeEe----cCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCC
Q psy16019          4 VLPTMW----LGSQNGSVFVHSAVSQW------RRCLHSIQ----LKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPD   66 (121)
Q Consensus         4 ~~~tvw----iGt~~g~I~v~~~~~~~------~~~l~~~~----l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~   66 (121)
                      ....+.    .|+.||.|.||+..+..      ++.+..++    +.++|.++.++.   +.+.+|..||+|.+|     
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw-----  177 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL-----  177 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE-----
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE-----
Confidence            344566    47789999999976531      12333333    357999999974   357779999999998     


Q ss_pred             CCCCCCCceEE--EeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         67 GQWDLSKYHTV--TLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        67 g~wd~~~~~~i--~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                         |+.....+  ..+ ...+|+|+...  ++.|+.|+. +.|.++|.+ ++..+.+
T Consensus       178 ---D~~~~~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~  229 (434)
T 2oit_A          178 ---QVTETVKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI  229 (434)
T ss_dssp             ---EESSSEEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred             ---EcCCCcceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence               55444332  223 23689999887  578998888 589999998 5555544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.98  E-value=0.00026  Score=51.46  Aligned_cols=104  Identities=11%  Similarity=0.058  Sum_probs=74.4

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCC---CEEEEEEeC--CEEEEEec-CCcEEEEEcCCCCCCCCCCceE---E
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD---SVLNIVHVQ--GRVVCALA-DGSVAIFRRGPDGQWDLSKYHT---V   77 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~---~V~~i~~~~--~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~---i   77 (121)
                      .+..++.++.|++|+..+  .+.++++.++.   .+.++.+..  +++|++.. +|.|.+|+.        ...+.   +
T Consensus         3 ~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~--------~~~~~~~~~   72 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL--------VTGETLGRI   72 (337)
T ss_dssp             EEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET--------TTCCEEEEE
T ss_pred             EEEEcCCCCeEEEEECCC--CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC--------CCCCeEeeE
Confidence            567888999999999887  46778888886   688888864  36777665 678999843        33323   4


Q ss_pred             EeCCCC---CceeEeeee--CCEEEEEe-------------CCeEEEEeCCCCcEEEEEEe
Q psy16019         78 TLGLPH---HSVRSLAAV--YNKVWCGY-------------KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        78 ~lg~~~---~pV~~m~~v--~~~lw~~~-------------gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      .++.+.   ..+.++...  ++.||++.             .+.|+++|..+++..+.++.
T Consensus        73 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             EcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            443310   144566665  56899985             48999999999998887753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.98  E-value=0.00021  Score=54.38  Aligned_cols=110  Identities=9%  Similarity=0.145  Sum_probs=71.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccc---------eeeeeEe-cC------------CCEEEEEEeCC----EEEEEecC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWR---------RCLHSIQ-LK------------DSVLNIVHVQG----RVVCALAD   55 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~---------~~l~~~~-l~------------~~V~~i~~~~~----~v~v~Lan   55 (121)
                      +.....+..|+.||.|.||+..+..+         +....++ +.            ++|.++.+..+    .+++|..|
T Consensus        37 s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d  116 (447)
T 3dw8_B           37 NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND  116 (447)
T ss_dssp             CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECS
T ss_pred             CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCC
Confidence            34567889999999999999876321         1344443 23            77999999854    69999999


Q ss_pred             CcEEEEEcCCCCC----CCC----------------CCce------------EEE-eCCCCCceeEeeee--CCEEEEEe
Q psy16019         56 GSVAIFRRGPDGQ----WDL----------------SKYH------------TVT-LGLPHHSVRSLAAV--YNKVWCGY  100 (121)
Q Consensus        56 G~l~Vy~r~~~g~----wd~----------------~~~~------------~i~-lg~~~~pV~~m~~v--~~~lw~~~  100 (121)
                      |+|.+|+......    +.+                .-|.            ... ......+|+++...  ++.|..|.
T Consensus       117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  196 (447)
T 3dw8_B          117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSAD  196 (447)
T ss_dssp             SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEEC
T ss_pred             CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeC
Confidence            9999997542110    000                0000            001 12224799999887  46677774


Q ss_pred             CCeEEEEeCCC
Q psy16019        101 KNKIHVVDPKS  111 (121)
Q Consensus       101 gn~I~Vi~~~t  111 (121)
                      .+.|.+.|..+
T Consensus       197 d~~i~iwd~~~  207 (447)
T 3dw8_B          197 DLRINLWHLEI  207 (447)
T ss_dssp             SSEEEEEETTE
T ss_pred             CCeEEEEECCC
Confidence            47899999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.97  E-value=0.00069  Score=52.15  Aligned_cols=103  Identities=13%  Similarity=0.059  Sum_probs=77.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      .....+..|+.||.|.||+..+  .+++..++ +...|.++.+....+..|..||.+.+|....      ....+..+..
T Consensus       157 pdg~~lasgs~Dg~v~iWd~~~--~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~------~~~~~~~~~~  228 (420)
T 4gga_A          157 KEGNYLAVGTSSAEVQLWDVQQ--QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRV------AEHHVATLSG  228 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTS------SSCEEEEEEC
T ss_pred             CCCCEEEEEECCCeEEEEEcCC--CcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecc------cceeeEEecc
Confidence            4567899999999999999987  56777775 4589999999999999999999999985332      1222333333


Q ss_pred             CCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         82 PHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        82 ~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      ...++.++...  ++.+..++. +.|.+.+..+.+
T Consensus       229 h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             cccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            33778777766  466777766 689999988765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.96  E-value=0.00088  Score=51.92  Aligned_cols=108  Identities=12%  Similarity=0.087  Sum_probs=72.8

Q ss_pred             eEEEEecCCeEEEEECCcccc--e---eeeeE-ecCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWR--R---CLHSI-QLKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~--~---~l~~~-~l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .+..|..||.|.+|+.....+  .   ....+ .+.+.|.++.+..   +.++++..||.|.+|+......  ......+
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~~~  273 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSHTV  273 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSEEE
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--CcceeEe
Confidence            788999999999999876311  1   13334 3457899999863   4666788999999996553321  1122333


Q ss_pred             EeCCCCCceeEeeeeC--C-EEEEEeC-CeEEEEeCCCC-cEEEEE
Q psy16019         78 TLGLPHHSVRSLAAVY--N-KVWCGYK-NKIHVVDPKSL-DVIRPV  118 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~--~-~lw~~~g-n~I~Vi~~~tl-~i~~~~  118 (121)
                      .-.  ..+|++|....  . -+..|+. +.|.++|..+. +..+.|
T Consensus       274 ~~~--~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~  317 (430)
T 2xyi_A          274 DAH--TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF  317 (430)
T ss_dssp             ECC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             ecC--CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence            333  38999999884  3 3556666 68999999884 444444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.00049  Score=57.69  Aligned_cols=101  Identities=11%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             CCe-EEEEecCCeEEEEECCcccceeeeeE--------ecC-CCEEEEEEe---CCEEEEEecCCcEEEEEcCCCCCCCC
Q psy16019          5 LPT-MWLGSQNGSVFVHSAVSQWRRCLHSI--------QLK-DSVLNIVHV---QGRVVCALADGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         5 ~~t-vwiGt~~g~I~v~~~~~~~~~~l~~~--------~l~-~~V~~i~~~---~~~v~v~LanG~l~Vy~r~~~g~wd~   71 (121)
                      ++. ||+||++|.|+.|+....   ....+        .++ ..|.+|...   ++.+++|..++-|..|...       
T Consensus        76 ~g~~lWigt~~~Gl~~~d~~~~---~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~-------  145 (781)
T 3v9f_A           76 VQPVIWIATQRAGLNAYNYETQ---SFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIA-------  145 (781)
T ss_dssp             SSSEEEEEESSSCEEEEETTTT---EEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETT-------
T ss_pred             CCCEEEEEeCCCCcceECCCCC---eEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECC-------
Confidence            456 999999978999997652   12222        123 368888875   4899999966668888543       


Q ss_pred             CCceEEEeC------CCCCceeEeeee-CCEEEEEeCC-eEEEEeCCCCcEEE
Q psy16019         72 SKYHTVTLG------LPHHSVRSLAAV-YNKVWCGYKN-KIHVVDPKSLDVIR  116 (121)
Q Consensus        72 ~~~~~i~lg------~~~~pV~~m~~v-~~~lw~~~gn-~I~Vi~~~tl~i~~  116 (121)
                       ..++..+.      .+...|++|... ++.||+|..+ .++.+|+.+.++++
T Consensus       146 -~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~  197 (781)
T 3v9f_A          146 -TGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKH  197 (781)
T ss_dssp             -TTEEEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             -CCeEEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEe
Confidence             22222221      223568898876 7999999975 99999998876643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.95  E-value=0.00045  Score=50.67  Aligned_cols=111  Identities=12%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             CCCCeEEEEecCC---eEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEEEEec-CCc-EEEEEcCCCCC-CCCCCc
Q psy16019          3 SVLPTMWLGSQNG---SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVVCALA-DGS-VAIFRRGPDGQ-WDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g---~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~v~La-nG~-l~Vy~r~~~g~-wd~~~~   74 (121)
                      .....++.+.+++   .|++|+..+  .+.+..+..+..+.++.+..+  ++|++.. ++. +.+|+...+|. .+.. .
T Consensus        93 ~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~  169 (331)
T 3u4y_A           93 PDDQFAVTVTGLNHPFNMQSYSFLK--NKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q  169 (331)
T ss_dssp             TTSSEEEECCCSSSSCEEEEEETTT--TEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E
T ss_pred             CCCCEEEEecCCCCcccEEEEECCC--CCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C
Confidence            4455677655553   899999887  466777777777888888754  6888755 488 99998776553 2222 2


Q ss_pred             eEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcE---EEEEE
Q psy16019         75 HTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDV---IRPVT  119 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i---~~~~~  119 (121)
                      ..+..+   ...+++...  ++.+|+++.  +.|.++|..+++.   .+.++
T Consensus       170 ~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~  218 (331)
T 3u4y_A          170 EFISGG---TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG  218 (331)
T ss_dssp             EEECSS---SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             ccccCC---CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence            333333   345777776  457999885  6899999999987   65554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.93  E-value=0.00018  Score=58.61  Aligned_cols=105  Identities=10%  Similarity=0.065  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEE-
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVT-   78 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~-   78 (121)
                      +.....+..|++||.|.+|+......++++...+++.|.++.+..  ..+.+|..||++.+|+....       .+.+. 
T Consensus       457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~-------~~~~~~  529 (611)
T 1nr0_A          457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-------FELAHT  529 (611)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-------TEESCC
T ss_pred             eCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC-------Cceeee
Confidence            345678999999999999998763222344456778999999975  47888999999999965432       22211 


Q ss_pred             --eCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCc
Q psy16019         79 --LGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        79 --lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                        .+....+|.++....  +.|..|+. +.|++.|.++.+
T Consensus       530 ~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence              221247999999884  56777777 689999988754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.91  E-value=8.4e-05  Score=54.57  Aligned_cols=108  Identities=12%  Similarity=0.134  Sum_probs=70.8

Q ss_pred             CCCeEEEEe-cCCeEEEEECCcccceeeeeEecCC-------CEEEEEEeC--CEEEEEecC------------CcEEEE
Q psy16019          4 VLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKD-------SVLNIVHVQ--GRVVCALAD------------GSVAIF   61 (121)
Q Consensus         4 ~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~-------~V~~i~~~~--~~v~v~Lan------------G~l~Vy   61 (121)
                      ....+|+.. .++.|++|+...  .+.+..+.++.       .+.++.+..  .++|++..+            +.|.+|
T Consensus        53 dg~~~~v~~~~~~~i~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~  130 (349)
T 1jmx_B           53 DNRTAYVLNNHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF  130 (349)
T ss_dssp             TSSEEEEEETTTTEEEEEETTT--TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCCEEEEEeCCCCcEEEEeCCC--CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEE
Confidence            345677765 589999999876  45666666643       266777763  478888865            899998


Q ss_pred             EcCCCCCCCCCCceEEEeCCCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019         62 RRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        62 ~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~~~~  119 (121)
                      +...+.  .........  .| ..+.++... ++++|++ ++.|+++|+.++++.+.++
T Consensus       131 d~~~~~--~~~~~~~~~--~~-~~~~~~~~s~dg~l~~~-~~~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          131 STADGL--EAKPVRTFP--MP-RQVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             EGGGGG--GBCCSEEEE--CC-SSCCCEEECTTSCEEEE-SSSEEEECTTTCCEEEEEC
T ss_pred             ECCCcc--ccceeeecc--CC-CcccceeECCCCcEEEc-cCcEEEEeCCCCceecccc
Confidence            543211  011112222  22 356777766 3448885 6669999999999887765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.91  E-value=0.00043  Score=49.71  Aligned_cols=100  Identities=5%  Similarity=0.051  Sum_probs=65.9

Q ss_pred             CCeEEEEec-CCeEEEEECCcccceeeeeEecC---CCEEEEEEe-CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV-QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~-~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      .+.+|+++. ++.|++|+...   + ...+.++   ..+.+|... ++++|++. .++.|.+|..  ++     ....+.
T Consensus       193 ~g~l~v~~~~~~~i~~~~~~g---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~--~g-----~~~~~~  261 (299)
T 2z2n_A          193 DDALWFVEIIGNKIGRITTSG---E-ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS--NN-----IIEEYP  261 (299)
T ss_dssp             TSSEEEEETTTTEEEEECTTC---C-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET--TT-----EEEEEE
T ss_pred             CCCEEEEccCCceEEEECCCC---c-EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC--CC-----ceEEEe
Confidence            357999985 78999999832   2 2234454   578888876 56899998 6788999954  12     112233


Q ss_pred             eCCCCCceeEeeeeCCEEEEEe-CCeEEEEeCCCCcEE
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGY-KNKIHVVDPKSLDVI  115 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~-gn~I~Vi~~~tl~i~  115 (121)
                      +......+++|...++.||++. .+.|..+++.+.++|
T Consensus       262 ~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~~~~~~~~  299 (299)
T 2z2n_A          262 IQIKSAEPHGICFDGETIWFAMECDKIGKLTLIKDNME  299 (299)
T ss_dssp             CSSSSCCEEEEEECSSCEEEEETTTEEEEEEEC-----
T ss_pred             CCCCCCccceEEecCCCEEEEecCCcEEEEEcCcccCC
Confidence            3322356778877668999997 589999999887654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.90  E-value=0.00052  Score=57.62  Aligned_cols=102  Identities=14%  Similarity=0.220  Sum_probs=70.0

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe--cCCCEEEEEE-eCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC-
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--LKDSVLNIVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG-   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--l~~~V~~i~~-~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg-   80 (121)
                      .+.+|+||.++.|+.|+....  +......  ....|.+|.. .++.+++|..++-|..|....        .+...+. 
T Consensus       183 ~g~lwigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~--------~~~~~~~~  252 (795)
T 4a2l_A          183 GDQIYIGTSTDGLYTYSITQK--TFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKT--------KEIKNYLH  252 (795)
T ss_dssp             TTEEEEEESSSCEEEEETTTC--CEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTT--------TEEEEECC
T ss_pred             CCCEEEEECCCCEEEEeCCCC--eEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCC--------CeEEEeec
Confidence            578999999878999997652  2111111  1257888875 578999999765578885432        2221111 


Q ss_pred             -------CCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         81 -------LPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        81 -------~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                             -+...|++|... ++.||+|..+.|+++|+.+.+.++
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~  296 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFAS  296 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEE
T ss_pred             CCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEE
Confidence                   123679999877 699999998899999998877654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.90  E-value=0.00035  Score=58.37  Aligned_cols=102  Identities=15%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE---Ee
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV---TL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i---~l   79 (121)
                      .++.||+||++ .|+.|+....  +-.... ..+..|.+|...++.+++|..+| |..|....+      ....+   .-
T Consensus        72 ~~g~lWigT~~-Gl~~yd~~~~--~f~~~~~~~~~~i~~i~~~~g~lWigt~~G-l~~~~~~~~------~~~~~~~~~~  141 (758)
T 3ott_A           72 DNTYLYMGTDN-GILVYNYRAD--RYEQPETDFPTDVRTMALQGDTLWLGALNG-LYTYQLQSR------KLTSFDTRRN  141 (758)
T ss_dssp             TTTEEEEEETT-EEEEEETTTT--EECCCSCCCCSCEEEEEEETTEEEEEETTE-EEEEETTTC------CEEEECHHHH
T ss_pred             CCCcEEEEeCC-CeEEEeCCCC--EEECcccCCCceEEEEEecCCcEEEEcCCc-ceeEeCCCC------eEEEeccCCC
Confidence            35689999986 4899997652  211111 12346888877889999999884 677754321      11111   01


Q ss_pred             CCCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEE
Q psy16019         80 GLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVI  115 (121)
Q Consensus        80 g~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~  115 (121)
                      +.+...|++|... ++.||+|..+.++.+|+.+.+.+
T Consensus       142 ~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~  178 (758)
T 3ott_A          142 GLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE  178 (758)
T ss_dssp             CCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEE
T ss_pred             CcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceE
Confidence            2234678898877 68999999999999999887654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.88  E-value=0.00014  Score=55.24  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEE-EEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRV-VCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v-~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      +.....+-.|+++| +.||++..  .+.......+ -.+.++.+..+.+ ++|..||+|.+|        |....+.+ .
T Consensus        28 s~dg~~la~g~~~~-~~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW--------d~~~~~~~~~   96 (355)
T 3vu4_A           28 NQDQSCLILSTLKS-FEIYNVHP--VAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW--------DDVKKQDVSR   96 (355)
T ss_dssp             CTTSSEEEEECSSE-EEEEEETT--EEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEE--------ETTTTEEEEE
T ss_pred             CCCCCEEEEEcCCE-EEEEecCC--cceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEE--------ECCCCcEEEE
Confidence            34556777888775 67999775  2333333333 3444555556665 667888999997        55444332 3


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCC-cEEE
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL-DVIR  116 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl-~i~~  116 (121)
                      +.. +.+|+++....+.+.++..++|++.|..+. +..+
T Consensus        97 ~~~-~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~  134 (355)
T 3vu4_A           97 IKV-DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRIT  134 (355)
T ss_dssp             EEC-SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSS
T ss_pred             EEC-CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeE
Confidence            332 369999999999999999999999999887 4443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00035  Score=52.34  Aligned_cols=111  Identities=12%  Similarity=0.079  Sum_probs=75.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCC----EEEEEecCCcEEEEEcCCCCCCCCCCceE-
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKYHT-   76 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~----~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-   76 (121)
                      .....+..|+.||.|.+|+......+++..+. +.+.|.++.+..+    .++.|..||+|.+|+......-+...... 
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  242 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE  242 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence            34567889999999999997653235677774 5589999999864    68889999999999654321101011112 


Q ss_pred             EEeCC-CCCceeEeeeeC-CEEEEEeC-CeEEEEeCCCCc
Q psy16019         77 VTLGL-PHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        77 i~lg~-~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      ..+.. ...+|.++.... +.|..|+. +.|.+.|..+.+
T Consensus       243 ~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          243 AILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE
T ss_pred             eecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc
Confidence            22322 247999998874 45666655 579999987764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.85  E-value=0.00055  Score=57.19  Aligned_cols=101  Identities=19%  Similarity=0.339  Sum_probs=66.9

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeE-----ecC-CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSI-----QLK-DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-----~l~-~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .+.+|+||++ .|+.|+....   ....+     .+| ..|.+|... ++.+++|..+| |..|....+.      ...+
T Consensus       112 ~g~lWigt~~-Gl~~~~~~~~---~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~------~~~~  180 (758)
T 3ott_A          112 GDTLWLGALN-GLYTYQLQSR---KLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGK------FEGI  180 (758)
T ss_dssp             TTEEEEEETT-EEEEEETTTC---CEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTE------EEEE
T ss_pred             CCcEEEEcCC-cceeEeCCCC---eEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCc------eEEe
Confidence            5689999987 7999997652   22222     244 478888876 78999999876 6677433211      1111


Q ss_pred             EeCC----CCCceeEeeeeC--CEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         78 TLGL----PHHSVRSLAAVY--NKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        78 ~lg~----~~~pV~~m~~v~--~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                      ....    +...|++|....  +.||+|..+.++.+|+.+.++++
T Consensus       181 ~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~  225 (758)
T 3ott_A          181 PLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQ  225 (758)
T ss_dssp             CCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEE
T ss_pred             cCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEe
Confidence            1111    123588888763  57999998889999998876653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.79  E-value=0.001  Score=48.67  Aligned_cols=100  Identities=13%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             CCeEE-EEecCCeEEEEECCcccceeeeeEecCC--CEEEEEEeC--CEEEEEe-cCCcEEEEEcCCCCCCCCCCceE--
Q psy16019          5 LPTMW-LGSQNGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVHVQ--GRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT--   76 (121)
Q Consensus         5 ~~tvw-iGt~~g~I~v~~~~~~~~~~l~~~~l~~--~V~~i~~~~--~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~--   76 (121)
                      .+.++ .++.++.|++|+..+  .+.++++.++.  .+..+.+..  +++|++. .+|.|.+|        |++..+.  
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~--------d~~t~~~~~   79 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI--------DLDTCKNTF   79 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE--------ETTTTEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCC--CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEE--------eCCCCcEEE
Confidence            34444 466899999999877  46777888876  677777763  3677776 57889998        4444433  


Q ss_pred             -EEeCCC----CCceeEeeee--CCEEEEEe-------------CCeEEEEeCCCCcE
Q psy16019         77 -VTLGLP----HHSVRSLAAV--YNKVWCGY-------------KNKIHVVDPKSLDV  114 (121)
Q Consensus        77 -i~lg~~----~~pV~~m~~v--~~~lw~~~-------------gn~I~Vi~~~tl~i  114 (121)
                       +.++..    ...++++...  ++.|+++.             .+.|+++|..+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence             344331    1225666665  56888887             58999999998543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.76  E-value=0.00077  Score=49.09  Aligned_cols=109  Identities=15%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             CCCCCeEEEEecC-CeEEEEECC--cccceeeeeEecCCCEEEEEEeC--CEEEEEec-CCcEEEEEcCCCCCCCCCCce
Q psy16019          2 TSVLPTMWLGSQN-GSVFVHSAV--SQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALA-DGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         2 ~~~~~tvwiGt~~-g~I~v~~~~--~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      +.....++++..+ +.|.+|+..  ....+.+..+..+..+.++.+..  .++|++.. +|.|.+|+.. +|    ...+
T Consensus        46 spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~----~~~~  120 (343)
T 1ri6_A           46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DG----LPVG  120 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TT----EEEE
T ss_pred             CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CC----cccc
Confidence            3455678888876 999999986  32234556667677788888864  36888775 7889999553 22    1122


Q ss_pred             EE-EeCCCCCceeEeeee--CCEEEEEe-C-CeEEEEeCCC-CcEEE
Q psy16019         76 TV-TLGLPHHSVRSLAAV--YNKVWCGY-K-NKIHVVDPKS-LDVIR  116 (121)
Q Consensus        76 ~i-~lg~~~~pV~~m~~v--~~~lw~~~-g-n~I~Vi~~~t-l~i~~  116 (121)
                      .+ .+.. ...+.++...  ++.|++++ + +.|.++|..+ .++..
T Consensus       121 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A          121 VVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             EEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             ccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence            22 2222 2356677666  46899887 4 7899999887 66653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.73  E-value=0.00048  Score=54.89  Aligned_cols=105  Identities=11%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-----------cCC--CEEEEEEeCCEEEEEecC----------CcEEEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-----------LKD--SVLNIVHVQGRVVCALAD----------GSVAIF   61 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-----------l~~--~V~~i~~~~~~v~v~Lan----------G~l~Vy   61 (121)
                      .+.++.-+.+|.+++++......+..+.+.           .|+  ....+.-..+++||++.+          ..|.|+
T Consensus       237 dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi  316 (386)
T 3sjl_D          237 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  316 (386)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence            345556888999999998764334444443           132  233443346899999852          469999


Q ss_pred             EcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CC-EEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         62 RRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YN-KVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        62 ~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~-~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                              |+...++   |.+|.   ++..|.+.  ++ .||.+++  +.|.|||+.|+++.++++.
T Consensus       317 --------D~~t~kv~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          317 --------DAKTGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             --------ETTTCCEEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             --------ECCCCeEEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence                    7777765   56766   55666766  33 6888886  7899999999999998864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.72  E-value=0.0011  Score=52.84  Aligned_cols=106  Identities=14%  Similarity=0.043  Sum_probs=76.6

Q ss_pred             CCCCeEEEEec-----CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEec----------CCcEEEEEcCC
Q psy16019          3 SVLPTMWLGSQ-----NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALA----------DGSVAIFRRGP   65 (121)
Q Consensus         3 ~~~~tvwiGt~-----~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~La----------nG~l~Vy~r~~   65 (121)
                      .....+|+..+     ++.+++++...  .+.+.+++.....- |...  ..++||+..          ++.|.||    
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t--~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi----  114 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVF----  114 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE----
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCC--CeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEE----
Confidence            34568999987     68999999987  67788887764333 6665  457999973          5679998    


Q ss_pred             CCCCCCCCceE---EEeCC-C-----CCceeEeeee--CCEEEEEeC---CeEEEEeCCCCcEEEEEEe
Q psy16019         66 DGQWDLSKYHT---VTLGL-P-----HHSVRSLAAV--YNKVWCGYK---NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        66 ~g~wd~~~~~~---i~lg~-~-----~~pV~~m~~v--~~~lw~~~g---n~I~Vi~~~tl~i~~~~~~  120 (121)
                          |....+.   |.++. .     ..| +.+.+.  ++.||+++.   +.|.|||+.|+++.+++++
T Consensus       115 ----D~~t~~v~~~I~v~~g~r~~~g~~P-~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          115 ----DPVTLLPTADIELPDAPRFLVGTYP-WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             ----CTTTCCEEEEEEETTCCCCCBSCCG-GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             ----ECCCCeEEEEEECCCccccccCCCC-ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence                6666654   55643 0     123 234443  789999973   7899999999999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.71  E-value=0.0014  Score=47.98  Aligned_cols=107  Identities=12%  Similarity=0.008  Sum_probs=73.1

Q ss_pred             CCeEEE-EecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEec-CCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          5 LPTMWL-GSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwi-Gt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .+.+|+ +..++.|.+|+...  .+.+..+..+ ..+ ++.+..  +++|++.. ++.|.+|....+.   + ....+..
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~---~-~~~~~~~   81 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDT--LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP---P-KVVAIQE   81 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTT--CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS---C-EEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEeCcc--cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc---e-eEEeccc
Confidence            445554 45689999999876  4556666665 455 777753  46888877 8899998554321   0 0233555


Q ss_pred             CCCCCceeEeeee--CCEEEEEeCC----eEEEEeCCCCcEEEEEEe
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYKN----KIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~gn----~I~Vi~~~tl~i~~~~~~  120 (121)
                      +.  .|..++...  ++.|+++.+.    .|.++|.++.++.+.++.
T Consensus        82 ~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~  126 (331)
T 3u4y_A           82 GQ--SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI  126 (331)
T ss_dssp             CS--SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CC--CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC
Confidence            55  676645655  5788877776    899999999999887653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.70  E-value=0.00099  Score=48.67  Aligned_cols=106  Identities=4%  Similarity=-0.078  Sum_probs=68.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccc--eeeeeEe-cCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWR--RCLHSIQ-LKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~--~~l~~~~-l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      .....+|.++.++.|++|+....-+  .....+. .+..+..|... ++++||+. +|.|.+|+.        +...+-.
T Consensus       181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~--------~g~~~~~  251 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTP--------DGDELGR  251 (296)
T ss_dssp             TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECT--------TSCEEEE
T ss_pred             CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECC--------CCCEEEE
Confidence            3455677888889999999752101  0011221 12344456654 66899999 888999843        2222223


Q ss_pred             eCCCCCceeEeeee---CCEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAV---YNKVWCGYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v---~~~lw~~~gn~I~Vi~~~tl~i~~~~  118 (121)
                      +..+.. +.++...   ++.||++..+.++-+++++.++||..
T Consensus       252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~~~  293 (296)
T 3e5z_A          252 VLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEHHH  293 (296)
T ss_dssp             EECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC--
T ss_pred             EECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccccccc
Confidence            333324 6777764   36899999999999999999999854

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.68  E-value=0.0016  Score=49.90  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=67.8

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEec-----------CCC--EEEEEEeCCEEEEEec-C----------CcEEEE
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-----------KDS--VLNIVHVQGRVVCALA-D----------GSVAIF   61 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-----------~~~--V~~i~~~~~~v~v~La-n----------G~l~Vy   61 (121)
                      ..+|..+.+|.+++++......+....+++           |..  .+.+.-..+++||+.. |          ++|.||
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence            467778888999999976532222233322           211  1222223479999876 3          368887


Q ss_pred             EcCCCCCCCCCCceEE---EeCCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCC--cEEEEE
Q psy16019         62 RRGPDGQWDLSKYHTV---TLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSL--DVIRPV  118 (121)
Q Consensus        62 ~r~~~g~wd~~~~~~i---~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl--~i~~~~  118 (121)
                              |+...+.+   .++.    ...|++.  ++.||+++++.|.|||++|+  ++.+++
T Consensus       292 --------D~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          292 --------DTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             --------ETTTTEEEEEEECTT----CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEE
T ss_pred             --------ECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEe
Confidence                    67776664   4443    6677766  68999999999999999999  888775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.66  E-value=0.0012  Score=53.13  Aligned_cols=105  Identities=14%  Similarity=0.038  Sum_probs=77.2

Q ss_pred             CCCeEEEEecC-----CeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEec----------CCcEEEEEcCCC
Q psy16019          4 VLPTMWLGSQN-----GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALA----------DGSVAIFRRGPD   66 (121)
Q Consensus         4 ~~~tvwiGt~~-----g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~La----------nG~l~Vy~r~~~   66 (121)
                      ..+.+|+..+.     +.|.+|+...  .+.+.++++.... .|.+.  ..++||+..          ++.|.||     
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t--~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi-----  154 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGST--GRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF-----  154 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTT--TEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE-----
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCC--CEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEE-----
Confidence            34578888874     6999999988  6788889887444 77776  457999973          6789999     


Q ss_pred             CCCCCCCceE---EEeCCC------CCceeEeee--eCCEEEEEe---CCeEEEEeCCCCcEEEEEEe
Q psy16019         67 GQWDLSKYHT---VTLGLP------HHSVRSLAA--VYNKVWCGY---KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        67 g~wd~~~~~~---i~lg~~------~~pV~~m~~--v~~~lw~~~---gn~I~Vi~~~tl~i~~~~~~  120 (121)
                         |....+.   |.++.+      ..| +-|.+  -++.||+++   .+.|.|||+.++++.+++++
T Consensus       155 ---D~~t~~vv~~I~v~g~~r~~~g~~P-~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          155 ---DPVTFLPIADIELPDAPRFLVGTYQ-WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             ---CTTTCCEEEEEEETTCCCCCBSCCG-GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             ---ECCCCcEEEEEECCCccccccCCCc-ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence               6666544   667511      122 23344  368999987   36899999999999998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.60  E-value=0.00059  Score=56.41  Aligned_cols=113  Identities=21%  Similarity=0.258  Sum_probs=76.5

Q ss_pred             CCeEEEEe--cCCeEEEEECCccc-----ceeeeeEecCC-CEEEEEEeC--CEEEEEec-------CCcEEEEEcCCC-
Q psy16019          5 LPTMWLGS--QNGSVFVHSAVSQW-----RRCLHSIQLKD-SVLNIVHVQ--GRVVCALA-------DGSVAIFRRGPD-   66 (121)
Q Consensus         5 ~~tvwiGt--~~g~I~v~~~~~~~-----~~~l~~~~l~~-~V~~i~~~~--~~v~v~La-------nG~l~Vy~r~~~-   66 (121)
                      ...+|.-+  .++.|.|++....-     -+.+++++.+. .-+-|+.+.  .++||...       +++|+||..... 
T Consensus       400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~  479 (567)
T 1qks_A          400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMT  479 (567)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCC
T ss_pred             CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccc
Confidence            35689765  36899999976521     24567777763 324455554  48999884       359999976532 


Q ss_pred             --CCCCCCCceEEEeC------CCCCceeEeeee--CCEEEEEeC------CeEEEEeCCCCcEEEEEE
Q psy16019         67 --GQWDLSKYHTVTLG------LPHHSVRSLAAV--YNKVWCGYK------NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        67 --g~wd~~~~~~i~lg------~~~~pV~~m~~v--~~~lw~~~g------n~I~Vi~~~tl~i~~~~~  119 (121)
                        |. + ..++++.++      .....++.+.+.  +++||++++      +.|.|+|.+|++++++++
T Consensus       480 ~~g~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          480 GDGS-D-PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CSSS-C-CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cccc-C-CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence              10 1 223666552      223566777777  689999954      889999999999999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.59  E-value=0.00089  Score=49.52  Aligned_cols=111  Identities=14%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             CCeEEEEe------------cCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEec-CCcEEEEEcC-CCCC
Q psy16019          5 LPTMWLGS------------QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALA-DGSVAIFRRG-PDGQ   68 (121)
Q Consensus         5 ~~tvwiGt------------~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~La-nG~l~Vy~r~-~~g~   68 (121)
                      .+.+|+|+            ..+.|+.++...........+   .....|.+.  .+.+|++-. ++.|.+|+.+ .+|.
T Consensus       108 dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~---~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~  184 (297)
T 3g4e_A          108 AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV---DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ  184 (297)
T ss_dssp             TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE---SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred             CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc---ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence            45699998            346788887653211111122   223455665  346877655 6889999764 4442


Q ss_pred             CCCCCceE-EEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         69 WDLSKYHT-VTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        69 wd~~~~~~-i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                        +.+.+. ..+.........|++. ++.||+++.  ++|.++|++|+++.+.+++
T Consensus       185 --~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          185 --ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             --EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             --ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence              222233 3443322345677775 579999974  6799999999999887764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.59  E-value=0.0049  Score=44.04  Aligned_cols=100  Identities=12%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CCCeEEEEec-CCeEEEEECCcccceeeeeEecC---CCEEEEEEe-CCEEEEEec-CCcEEEEEcCCCCCCCCCCceEE
Q psy16019          4 VLPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV-QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         4 ~~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~-~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      ..+.+|+++. ++.|++|+...   + ...+.++   ..+.+|... ++.+|++.. +|.|..|+..  +     ....+
T Consensus        24 ~~g~l~v~~~~~~~v~~~d~~~---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g-----~~~~~   92 (299)
T 2z2n_A           24 DKGKVWITQHKANMISCINLDG---K-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--G-----IIKEY   92 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTTC---C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--S-----CEEEE
T ss_pred             CCCCEEEEecCCCcEEEEcCCC---C-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--C-----cEEEE
Confidence            3568999997 68999999763   2 2333333   578888874 568898876 6888888432  2     12334


Q ss_pred             EeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEE
Q psy16019         78 TLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVI  115 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~  115 (121)
                      .+..+...+..|+.. ++.||++..  +.|+++|+ +.++.
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            443223456777776 588999873  68999998 66554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.57  E-value=0.0033  Score=48.89  Aligned_cols=101  Identities=10%  Similarity=0.064  Sum_probs=66.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEec-----------CCCEEEEEE--eCCEEEEEecC----------CcEEEEE
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-----------KDSVLNIVH--VQGRVVCALAD----------GSVAIFR   62 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-----------~~~V~~i~~--~~~~v~v~Lan----------G~l~Vy~   62 (121)
                      +.+|.-+.+|.+++++......+.+..+.+           |+...-+..  ..+++||++.+          +.|.|+ 
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI-  303 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV-  303 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE-
Confidence            345555678899999986532233344433           333322333  35799999864          479999 


Q ss_pred             cCCCCCCCCCCceE---EEeCCCCCceeEeeee--CC-EEEEEeC--CeEEEEeCCCCcEEEE
Q psy16019         63 RGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YN-KVWCGYK--NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        63 r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~-~lw~~~g--n~I~Vi~~~tl~i~~~  117 (121)
                             |++..+.   |.++.  . ...|.+.  ++ .+|.+..  |.|.|||+.|+++.++
T Consensus       304 -------D~~t~~vv~~i~~g~--~-p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          304 -------TGLVGQTSSQISLGH--D-VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             -------ECCCCEEEEEEECCC--C-cCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                   6666655   56655  3 3456666  45 5777763  8999999999999988

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.0018  Score=52.73  Aligned_cols=104  Identities=14%  Similarity=0.096  Sum_probs=70.8

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEE--EeC---CEEEEEecCCcEEEEEcCCCCCCCCCCce---E
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIV--HVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYH---T   76 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~--~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~---~   76 (121)
                      +.+..|+.||.|.+|+..+. +.....++ +.++|.++.  +..   ..+..|..||++-+|        |+.+.+   .
T Consensus       278 ~~lasgs~DgtV~lWD~~~~-~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW--------D~~~~~~~~~  348 (524)
T 2j04_B          278 TTVVCGFKNGFVAEFDLTDP-EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF--------NPKDIATTKT  348 (524)
T ss_dssp             SEEEEEETTSEEEEEETTBC-SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE--------CGGGHHHHCE
T ss_pred             CeEEEEeCCCEEEEEECCCC-CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE--------ECCCCCcccc
Confidence            57899999999999999863 23344455 347999993  443   356778889999997        665542   2


Q ss_pred             EEeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         77 VTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      +.-..+..+|.++....  ..+.+|.+ +.|.+.|..+++..+.|
T Consensus       349 ~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l  393 (524)
T 2j04_B          349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL  393 (524)
T ss_dssp             EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE
T ss_pred             cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee
Confidence            32111113577888774  45555555 57999999998765554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0013  Score=53.69  Aligned_cols=106  Identities=14%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccc---------eeeeeEec-CCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWR---------RCLHSIQL-KDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~---------~~l~~~~l-~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      .+.+-.|+.||.|.+|++.....         +....+.. .+.|+|+.+. ++.+++|..||+|.+|+.....    ..
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~----~~  300 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE----VP  300 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS----SC
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC----Cc
Confidence            35777899999999999875311         11224433 3789999985 4689999999999998543210    11


Q ss_pred             ceEEEeCCCCCceeEee--eeC-C-E-EEEEeC-CeEEEEeCCCCcEEE
Q psy16019         74 YHTVTLGLPHHSVRSLA--AVY-N-K-VWCGYK-NKIHVVDPKSLDVIR  116 (121)
Q Consensus        74 ~~~i~lg~~~~pV~~m~--~v~-~-~-lw~~~g-n~I~Vi~~~tl~i~~  116 (121)
                      ...+....  .+|+++.  ... + . |.-|+. +.|.+.|..+.+..+
T Consensus       301 ~~~~~~H~--~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          301 SFYDQVHD--SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             SEEEECSS--SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred             eEEeeccc--ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence            23345545  8999994  333 3 4 444554 689999998765433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.54  E-value=0.0053  Score=45.18  Aligned_cols=103  Identities=11%  Similarity=0.094  Sum_probs=65.8

Q ss_pred             CeEE-EEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe-CCEEEEEecCC-----cEEEEEcCCCCCCCCCCce-E
Q psy16019          6 PTMW-LGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV-QGRVVCALADG-----SVAIFRRGPDGQWDLSKYH-T   76 (121)
Q Consensus         6 ~tvw-iGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~-~~~v~v~LanG-----~l~Vy~r~~~g~wd~~~~~-~   76 (121)
                      +.+| .++.++.|++|+...  .+..... ..+..+.+|... ++++|++..++     .|.+|+....      ... +
T Consensus        56 g~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~------~~~~~  127 (333)
T 2dg1_A           56 GQLFLLDVFEGNIFKINPET--KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD------NLQDI  127 (333)
T ss_dssp             SCEEEEETTTCEEEEECTTT--CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC------SCEEE
T ss_pred             CCEEEEECCCCEEEEEeCCC--CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC------EEEEE
Confidence            4576 578899999999765  2322222 234789999886 55788887654     7888743221      111 2


Q ss_pred             EEeCCCCCceeEeeee-CCEEEEEeC--------CeEEEEeCCCCcEEE
Q psy16019         77 VTLGLPHHSVRSLAAV-YNKVWCGYK--------NKIHVVDPKSLDVIR  116 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v-~~~lw~~~g--------n~I~Vi~~~tl~i~~  116 (121)
                      +.-..+...+..+... ++.+|++..        ..|+.+|+++.+++.
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~  176 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP  176 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE
Confidence            2111123467777776 578999875        479999998876654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.53  E-value=0.00095  Score=48.59  Aligned_cols=109  Identities=15%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             CCeEEEE-ecCCeEEEEECCcc-cceeeeeEecCCCEEEEEEe--CCEEEEEecC-CcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          5 LPTMWLG-SQNGSVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHV--QGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         5 ~~tvwiG-t~~g~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~--~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      ...++++ ..+|.|++|+.... ..+.+..+..+..+.++.+.  +.++|++..+ |.|.+|....++    .....+ .
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~----~~~~~~~~   79 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD----GALTFAAE   79 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----CCEEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC----Cceeeccc
Confidence            3466777 67999999998532 12455666777788888886  3468888887 999999654211    122222 2


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeC---CCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDP---KSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~---~tl~i~~~~  118 (121)
                      +..+ ..+.++...  ++.||+++.  +.|.++|.   .+.+..+.+
T Consensus        80 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  125 (343)
T 1ri6_A           80 SALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV  125 (343)
T ss_dssp             EECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE
T ss_pred             cccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc
Confidence            2222 255666665  567888774  67999998   444444443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.49  E-value=0.003  Score=49.81  Aligned_cols=98  Identities=9%  Similarity=0.046  Sum_probs=64.5

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeee-eEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLH-SIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL   81 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~-~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~   81 (121)
                      ...+..|+.||.|.+|+....  +... ...+.+.|.++.++  +.++++|..||+|.+|        |........+..
T Consensus       162 ~~~las~s~Dg~v~iwD~~~~--~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iw--------d~~~~~~~~~~~  231 (434)
T 2oit_A          162 PSMVAVCLADGSIAVLQVTET--VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY--------LPTLQEKKVIPC  231 (434)
T ss_dssp             TTEEEEEETTSCEEEEEESSS--EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEE--------CTTCCEEEEECC
T ss_pred             CCEEEEEECCCeEEEEEcCCC--cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEE--------ccCCcccccccC
Confidence            456788999999999998874  3333 23455799999997  4589999999999998        444211222211


Q ss_pred             C-------CCceeEeeeeCCEEEE---EeC-------CeEEEEeCCCC
Q psy16019         82 P-------HHSVRSLAAVYNKVWC---GYK-------NKIHVVDPKSL  112 (121)
Q Consensus        82 ~-------~~pV~~m~~v~~~lw~---~~g-------n~I~Vi~~~tl  112 (121)
                      +       ..+|.++...++..++   +.+       ..+++.+..+.
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            1       1277788877655544   323       23777776654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.47  E-value=0.0048  Score=46.98  Aligned_cols=99  Identities=13%  Similarity=0.024  Sum_probs=66.6

Q ss_pred             CCCeEEEEecCC----eEEEEECCccccee--eeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          4 VLPTMWLGSQNG----SVFVHSAVSQWRRC--LHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         4 ~~~tvwiGt~~g----~I~v~~~~~~~~~~--l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      ....+..|+.++    .+..++........  ...+. ...+|+++.+..  ..+.+|..||+|.||        |+.+.
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw--------d~~~~  301 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV--------KLKDL  301 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE--------ETTTT
T ss_pred             CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE--------ECCCC
Confidence            344566777666    56677765532222  23332 347899999874  468889999999997        77777


Q ss_pred             eEE-EeCC-CCCceeEeeeeC--CEEEEEeC-CeEEEEeCC
Q psy16019         75 HTV-TLGL-PHHSVRSLAAVY--NKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        75 ~~i-~lg~-~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~  110 (121)
                      +.+ ++-. -..+|++++...  +.|.-|+. +.|+|.+..
T Consensus       302 ~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          302 SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            665 3322 248999999883  55666666 689999964

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.46  E-value=0.0065  Score=44.02  Aligned_cols=100  Identities=9%  Similarity=0.056  Sum_probs=65.7

Q ss_pred             CCCeEEEE--------ecCCeEEEEECCcccceeeeeEec------CCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCC
Q psy16019          4 VLPTMWLG--------SQNGSVFVHSAVSQWRRCLHSIQL------KDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDG   67 (121)
Q Consensus         4 ~~~tvwiG--------t~~g~I~v~~~~~~~~~~l~~~~l------~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g   67 (121)
                      ..+.+|++        +.++.|++|+..+.  + ...+..      ...+.+|....  +++|++..++.|.+|+..  |
T Consensus        27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g--~-~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~--g  101 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTG--K-KTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD--G  101 (314)
T ss_dssp             TTSCEEEEETTCEETTEECCEEEEECTTTC--C-EEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT--S
T ss_pred             CCCCEEEEEeccccCCCCCCEEEEEeCCCC--c-EEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC--C
Confidence            34578888        78999999986552  2 223322      25678888764  689999887778888543  2


Q ss_pred             CCCCCCceEEEe------CCCCCceeEeeee-CCEEEEEeC-----------------CeEEEEeCCCCcEEE
Q psy16019         68 QWDLSKYHTVTL------GLPHHSVRSLAAV-YNKVWCGYK-----------------NKIHVVDPKSLDVIR  116 (121)
Q Consensus        68 ~wd~~~~~~i~l------g~~~~pV~~m~~v-~~~lw~~~g-----------------n~I~Vi~~~tl~i~~  116 (121)
                             +...+      +.+...+++|+.. ++.+|++..                 +.|+.+|+. .+++.
T Consensus       102 -------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~  166 (314)
T 1pjx_A          102 -------TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             -------CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             -------CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence                   12222      1112346777776 578999886                 479999987 66554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.44  E-value=0.0028  Score=47.03  Aligned_cols=100  Identities=12%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             CeEEEEecCCeEEEEECCcccc-eeeeeEe-cCCCEEEEEEeC------CEEEEEecCCcEEEEEcCCC--CCCCCCCce
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWR-RCLHSIQ-LKDSVLNIVHVQ------GRVVCALADGSVAIFRRGPD--GQWDLSKYH   75 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~-~~l~~~~-l~~~V~~i~~~~------~~v~v~LanG~l~Vy~r~~~--g~wd~~~~~   75 (121)
                      ..+..|++||.|.+|+.....+ +++..++ +.+.|.++.+..      ..+..|..||+|.+|+....  +.|.   .+
T Consensus       180 ~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~---~~  256 (316)
T 3bg1_A          180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS---PK  256 (316)
T ss_dssp             CBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB---CC
T ss_pred             ceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchh---hh
Confidence            4688899999999999864211 3455554 458999999875      46888999999999965431  2121   23


Q ss_pred             EEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCC
Q psy16019         76 TVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~  110 (121)
                      .+.--  ..+|.++...  ++.|..|+. +.|.+.+..
T Consensus       257 ~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          257 LLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             hhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            33322  3799999877  466777776 579999865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.41  E-value=0.015  Score=41.89  Aligned_cols=102  Identities=8%  Similarity=0.083  Sum_probs=66.4

Q ss_pred             CCeEEEE-ecCCeEEEEECCcccceeeeeEecC-------CCEEEEEE--eCCEEEEEec--CCcEEEEEcCCCCCCCCC
Q psy16019          5 LPTMWLG-SQNGSVFVHSAVSQWRRCLHSIQLK-------DSVLNIVH--VQGRVVCALA--DGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         5 ~~tvwiG-t~~g~I~v~~~~~~~~~~l~~~~l~-------~~V~~i~~--~~~~v~v~La--nG~l~Vy~r~~~g~wd~~   72 (121)
                      .+.+|++ +.++.|++|+...   +.+..+..+       ..+.+|..  .++++||+..  ++.|.+|..        +
T Consensus        40 ~g~l~v~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~--------~  108 (286)
T 1q7f_A           40 QNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ--------Y  108 (286)
T ss_dssp             TCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT--------T
T ss_pred             CCCEEEEECCCCEEEEECCCC---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC--------C
Confidence            3568887 5789999999764   334444321       36778887  3679999985  889999842        1


Q ss_pred             CceEEEeCCC-CCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         73 KYHTVTLGLP-HHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        73 ~~~~i~lg~~-~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      ....-.++.+ ...++.|+.. ++.+|++..  ++|+++|+. .+..+.+
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~  157 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF  157 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEe
Confidence            1122234332 2345777776 467999874  689999975 4555544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.38  E-value=0.0029  Score=52.05  Aligned_cols=108  Identities=12%  Similarity=0.180  Sum_probs=75.1

Q ss_pred             CCeEEEEec-CCeEEEEEC-CcccceeeeeEecCCC--E----------EEEEEeCCEEEEEecCCcEEEEEcCCCC-CC
Q psy16019          5 LPTMWLGSQ-NGSVFVHSA-VSQWRRCLHSIQLKDS--V----------LNIVHVQGRVVCALADGSVAIFRRGPDG-QW   69 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~-~~~~~~~l~~~~l~~~--V----------~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~w   69 (121)
                      .++|++++. ++.|+.+++ .+  -+.+++.+++..  +          ....+.+++||++..||.|..++...+. .|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDP--GKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCT--TSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCC--ccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            468999999 899999998 55  366777765521  0          1245678999999999999999765433 35


Q ss_pred             CCCCceEEEeCCC--CCcee-EeeeeCCEEEEEeC-------CeEEEEeCCCCcEEEEEEe
Q psy16019         70 DLSKYHTVTLGLP--HHSVR-SLAAVYNKVWCGYK-------NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        70 d~~~~~~i~lg~~--~~pV~-~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ..      .++.+  ...+. +-.+.++.|+++++       +.|+.+|++|+++.-+++.
T Consensus       140 ~~------~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          140 EV------EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EE------ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             Ee------cCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            32      23221  01222 12346899999885       6899999999999877653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.37  E-value=0.01  Score=44.04  Aligned_cols=108  Identities=10%  Similarity=0.113  Sum_probs=72.2

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCC--CEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~--~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      ++..+.++.|++++.|++++..+  -+.++++..+.  .+.++... ++++|+ ..++.|..|.+...-.|.+.      
T Consensus         2 ~~~~~~lv~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~------   72 (276)
T 3no2_A            2 SSPQHLLVGGSGWNKIAIINKDT--KEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIA------   72 (276)
T ss_dssp             -CCCEEEEECTTCSEEEEEETTT--TEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEE------
T ss_pred             CCCCcEEEeeCCCCEEEEEECCC--CeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEc------
Confidence            46678999999999999999856  47788888764  56666664 557777 45777888866222234432      


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-C-eEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-N-KIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n-~I~Vi~~~tl~i~~~~~~  120 (121)
                      .+. ...+.+....  ++.+.+.++ + +|+.+|+ ++++..++.+
T Consensus        73 ~~~-~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~  116 (276)
T 3no2_A           73 APA-GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEF  116 (276)
T ss_dssp             CCT-TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEE
T ss_pred             CCC-CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEec
Confidence            221 1355555544  456666666 4 7888987 7888877764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.37  E-value=0.002  Score=54.01  Aligned_cols=108  Identities=11%  Similarity=0.055  Sum_probs=76.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCC------------EEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS------------VLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~------------V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~   71 (121)
                      .++|++++.++.|+.+++.+  -+.+++.+.+..            -..+.+.+++||++..||.|..++...+. .|..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRT--GNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTT--TEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCC--CcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            46899999999999999876  467787765421            12345688999999999999999765443 3543


Q ss_pred             CCceEEEeC-CC--CCcee-EeeeeCCEEEEEeC-------CeEEEEeCCCCcEEEEEEe
Q psy16019         72 SKYHTVTLG-LP--HHSVR-SLAAVYNKVWCGYK-------NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        72 ~~~~~i~lg-~~--~~pV~-~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~~~~~  120 (121)
                            ..+ ++  ..++. .-.+.++.++++.+       +.|+.+|++|+++.-+++.
T Consensus       155 ------~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          155 ------NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             ------ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             ------cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence                  222 10  01222 22356899999874       6899999999999877653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.017  Score=48.39  Aligned_cols=105  Identities=13%  Similarity=0.121  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCC------CEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD------SVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~------~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      +.....+-.|+.||.+.||+...    ++..+. +.      +|.++.++  +..+++|..||+|-+|+...+   .+.+
T Consensus        94 SPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~---~l~~  165 (588)
T 2j04_A           94 SPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN---SENT  165 (588)
T ss_dssp             CSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC---TTTC
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC---cccc
Confidence            34566788999999999999443    455555 43      59999987  458999999999999976542   2334


Q ss_pred             c-----eEEEeCC--CCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcE
Q psy16019         74 Y-----HTVTLGL--PHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDV  114 (121)
Q Consensus        74 ~-----~~i~lg~--~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i  114 (121)
                      |     +.+..+.  ...+|.+++...+.+.++.. +.|++.|..+.++
T Consensus       166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          166 PEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             CCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS
T ss_pred             ccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc
Confidence            4     2233222  24699999999655766666 7899999988773

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00017  Score=56.65  Aligned_cols=109  Identities=14%  Similarity=0.181  Sum_probs=73.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC--CCEEEEEE----eCCEEEEE--ecCCcEEEEEcCCCCC--CCCCCc
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVH----VQGRVVCA--LADGSVAIFRRGPDGQ--WDLSKY   74 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~----~~~~v~v~--LanG~l~Vy~r~~~g~--wd~~~~   74 (121)
                      .+.|++||.||.|+-++..+  =+.+|+++.+  .+++....    .++.+|+.  ..||.|..|.... |.  |...-+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~t--G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~   86 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRN--GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTT--TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHH
T ss_pred             CCEEEEEeCCCeEEEEECCC--CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccc
Confidence            56899999999999999876  4778888776  34433221    13467777  6899999997643 32  221111


Q ss_pred             eEEEeCCCCCceeE---eee-------eCCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         75 HTVTLGLPHHSVRS---LAA-------VYNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        75 ~~i~lg~~~~pV~~---m~~-------v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .++  .  ..|++.   ..+       .++.+++|.. .+++.||+.|+++..++..
T Consensus        87 ~lv--~--~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           87 QLV--S--TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHH--T--TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             cce--e--ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            111  1  245542   112       5788999888 6899999999999988753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.35  E-value=0.011  Score=43.98  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=69.5

Q ss_pred             CCCCeEEEEe-cCCeEEEEECCcccceeeeeEec-C---CCEEEEEEe--CCEEEEEecC--CcEEEEEcCC-CCCCCCC
Q psy16019          3 SVLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQL-K---DSVLNIVHV--QGRVVCALAD--GSVAIFRRGP-DGQWDLS   72 (121)
Q Consensus         3 ~~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l-~---~~V~~i~~~--~~~v~v~Lan--G~l~Vy~r~~-~g~wd~~   72 (121)
                      .....+++.. .++.|.+|+..+...+.+..+.. +   ..+.+|.+.  +.++|++..+  +.|.+|+... +|.+  .
T Consensus       220 pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~--~  297 (361)
T 3scy_A          220 SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL--T  297 (361)
T ss_dssp             TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE--E
T ss_pred             CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE--E
Confidence            4455788888 58999999977532223444432 2   245677776  3468888775  8899997652 2321  1


Q ss_pred             CceEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEE--EeCCCCcEEE
Q psy16019         73 KYHTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHV--VDPKSLDVIR  116 (121)
Q Consensus        73 ~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~V--i~~~tl~i~~  116 (121)
                      ....+..+   ..+++|...  ++.|++++.  +.|.+  +|+++++++.
T Consensus       298 ~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          298 KVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             EEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            11123332   456677776  567999984  67777  7888988765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.35  E-value=0.0039  Score=44.33  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             CCeEEE-E-ecCCeEEEEECCcccceeeeeEecC--CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          5 LPTMWL-G-SQNGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwi-G-t~~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .+.+|+ + +.++.|++|+....  + ...+...  ..+.+|... ++.+|++..+|.|.+|....        .....+
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~--------~~~~~~  102 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGST--G-TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS--------NNQTVL  102 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC--------SCCEEC
T ss_pred             CCCEEEEccCCCCcEEEecCCCc--c-cceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC--------ceEeee
Confidence            456999 7 67899999986552  1 1222122  356677776 45799998888999985432        111122


Q ss_pred             CCC-CCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcE
Q psy16019         80 GLP-HHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDV  114 (121)
Q Consensus        80 g~~-~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i  114 (121)
                      ... ....+.|+.. ++.||++..  ++|++++..+...
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  141 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence            211 1455777776 567999874  6899998776554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.34  E-value=0.0032  Score=50.59  Aligned_cols=104  Identities=12%  Similarity=0.133  Sum_probs=70.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-----------cCCCE--EEEEEeCCEEEEEecC----------CcEEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-----------LKDSV--LNIVHVQGRVVCALAD----------GSVAI   60 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-----------l~~~V--~~i~~~~~~v~v~Lan----------G~l~V   60 (121)
                      ....+|.-+.+|.+++++......+....+.           .|...  ..+.-..+++||+..+          ++|.|
T Consensus       275 dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV  354 (426)
T 3c75_H          275 RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV  354 (426)
T ss_dssp             TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence            3467888899999999997653222222222           12221  2333345799999864          47999


Q ss_pred             EEcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CC-EEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         61 FRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YN-KVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        61 y~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~-~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      +        |+...+.   |.+|.  .| ..|.+.  ++ .++.++.  +.|.|||+.|+++.+++
T Consensus       355 I--------D~~T~kvv~~I~vg~--~P-~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          355 L--------NAETGERINKIELGH--EI-DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             E--------ETTTCCEEEEEEEEE--EE-CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             E--------ECCCCeEEEEEECCC--Cc-CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            9        6666655   56666  33 355555  56 7888884  89999999999999987

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.34  E-value=0.0051  Score=47.17  Aligned_cols=112  Identities=7%  Similarity=0.015  Sum_probs=67.6

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC---EEEEEecCCcEEEEEcCCCCC-CCCCCc------e
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG---RVVCALADGSVAIFRRGPDGQ-WDLSKY------H   75 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~---~v~v~LanG~l~Vy~r~~~g~-wd~~~~------~   75 (121)
                      ..+--|++|+.|.||++.+. ++....+.++++|+++.++.+   ++.+|..||+|.+|+-..... ......      .
T Consensus       157 ~~las~s~D~tv~~Wd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDE-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETT-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             CEEEEEECCCeEEEEECCCC-ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            46778899999999998762 233445578899999999853   588899999999996543211 000000      0


Q ss_pred             EE-----------EeCCCCCceeEeeee---CCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         76 TV-----------TLGLPHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        76 ~i-----------~lg~~~~pV~~m~~v---~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      .+           .......+|.++...   ++.|..++. +.|.+.|..+.+..+.+
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l  293 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI  293 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred             EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence            00           111123677787765   467777776 68999998887665544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.33  E-value=0.004  Score=43.81  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=62.5

Q ss_pred             ecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe--CCCCCceeE
Q psy16019         12 SQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GLPHHSVRS   88 (121)
Q Consensus        12 t~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l--g~~~~pV~~   88 (121)
                      ..++.|++|+...  .+.......+..|.++.+.. ++.++...+|.|.+|+....       .+...+  +....++.+
T Consensus        19 ~~~~~i~~~d~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           19 SMRSSIEIFNIRT--RKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGD-------PSPEKVDTGFATICNND   89 (297)
T ss_dssp             CCCEEEEEEETTT--TEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSC-------CSCEECCCTTCCCBCSC
T ss_pred             CcceeEEEEeCCC--CceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCC-------CCceEeccccccccccc
Confidence            3578999999877  34444456678999999874 34444456999999854321       222222  222357777


Q ss_pred             eeee--CCEEEEEe-----CCeEEEEeCCCCcEE
Q psy16019         89 LAAV--YNKVWCGY-----KNKIHVVDPKSLDVI  115 (121)
Q Consensus        89 m~~v--~~~lw~~~-----gn~I~Vi~~~tl~i~  115 (121)
                      +...  ++.|+++.     ..+|+.++..+.+..
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~  123 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR  123 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCceE
Confidence            7766  57788877     368999998876643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.32  E-value=0.019  Score=40.86  Aligned_cols=100  Identities=9%  Similarity=0.225  Sum_probs=67.1

Q ss_pred             CCCeEEEEec-CCeEEEEECCcccceeeeeEecC---CCEEEEEEe-CCEEEEEec-CCcEEEEEcCCCCCCCCCCceEE
Q psy16019          4 VLPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV-QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         4 ~~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~-~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      ..+.+|+++. ++.|++|+...   + ...+.++   ..+.+|... ++.+|++.. +|.|..|...  |.     ...+
T Consensus        29 ~~g~l~v~~~~~~~v~~~~~~~---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~-----~~~~   97 (300)
T 2qc5_A           29 EDGKVWFTQHKANKISSLDQSG---R-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GG-----FTEY   97 (300)
T ss_dssp             TTSCEEEEETTTTEEEEECTTS---C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-----EEEE
T ss_pred             CCCCEEEEcCCCCeEEEECCCC---c-eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CC-----eEEe
Confidence            3568999994 79999999763   1 2224444   467788775 467999886 6788888433  21     1223


Q ss_pred             EeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEE
Q psy16019         78 TLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVI  115 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~  115 (121)
                      .+......+.+|+.. ++.+|++..  +.|+.+|+. .++.
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            333222456777776 588999884  689999987 6655

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.32  E-value=0.0011  Score=52.17  Aligned_cols=104  Identities=9%  Similarity=0.003  Sum_probs=67.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec-----------CCC--EEEEEEeCCEEEEEec-C-C-------cEEEEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-----------KDS--VLNIVHVQGRVVCALA-D-G-------SVAIFR   62 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-----------~~~--V~~i~~~~~~v~v~La-n-G-------~l~Vy~   62 (121)
                      .+.+|..+. |.+++++......+....+.+           |..  ...+.-..+++||++. + |       .+.|+ 
T Consensus       222 ~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi-  299 (368)
T 1mda_H          222 PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV-  299 (368)
T ss_dssp             TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE-
T ss_pred             CCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE-
Confidence            345666667 999999986532233333322           211  1223334579999976 4 3       56687 


Q ss_pred             cCCCCCCCCCCceE---EEeCCCCCceeEeeee--CCEEEEEeC---CeEEEEeCCCCcEEEEEEe
Q psy16019         63 RGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YNKVWCGYK---NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        63 r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~~lw~~~g---n~I~Vi~~~tl~i~~~~~~  120 (121)
                             |+...+.   |.+|.   ....|.+.  ++.+|++++   |.|.|||+.|+++.+++++
T Consensus       300 -------D~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          300 -------TASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             -------ESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             -------ECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence                   6766655   46655   34466666  456888774   7999999999999998865

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.32  E-value=0.019  Score=41.32  Aligned_cols=103  Identities=8%  Similarity=0.110  Sum_probs=67.3

Q ss_pred             CCCeEEEEec--CCeEEEEECCcccceeeeeEecC--CCEEEEEEe-CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          4 VLPTMWLGSQ--NGSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV-QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         4 ~~~tvwiGt~--~g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~-~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      ..+.+|++..  ++.|++|+...   +.+..+..+  ..+.+|... ++++||+. .++.|.+|..        +.....
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d~~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~--------~g~~~~  155 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYNQYG---QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ--------NGNVLH  155 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEECTTS---CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT--------TSCEEE
T ss_pred             CCCeEEEEcCCCCCEEEEECCCC---cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC--------CCCEEE
Confidence            4678999985  78999999443   445555443  467788875 45788885 4688999842        222233


Q ss_pred             EeCC--CCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         78 TLGL--PHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        78 ~lg~--~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      .++.  ....++.|+.. ++++|++..  +.|+++|+.. +..+.+
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~  200 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI  200 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEE
Confidence            3432  12345778777 478999874  7899999854 444433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.31  E-value=0.01  Score=44.57  Aligned_cols=100  Identities=15%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEE-eC--
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT-LG--   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~-lg--   80 (121)
                      +...|+++.++.|+.|+....   ....+.++..|.+|... +++++++..+| |.+|+... |     ....+. ..  
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~---~~~~~~~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~-g-----~~~~~~~~~~~  130 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASG---RKTVHALPFMGSALAKISDSKQLIASDDG-LFLRDTAT-G-----VLTLHAELESD  130 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTT---EEEEEECSSCEEEEEEEETTEEEEEETTE-EEEEETTT-C-----CEEEEECSSTT
T ss_pred             CEEEEEECCCCEEEEEECCCC---cEEEEECCCcceEEEEeCCCeEEEEECCC-EEEEECCC-C-----cEEEEeeCCCC
Confidence            457889999999999998762   23345677889898864 67899998766 77774321 1     112221 11  


Q ss_pred             CCCCceeEeeee-CCEEEEEeC--------CeEEEEeCCCCcEEE
Q psy16019         81 LPHHSVRSLAAV-YNKVWCGYK--------NKIHVVDPKSLDVIR  116 (121)
Q Consensus        81 ~~~~pV~~m~~v-~~~lw~~~g--------n~I~Vi~~~tl~i~~  116 (121)
                      .+...+..+... .+.+|++..        ..|+.++  ++++..
T Consensus       131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~  173 (326)
T 2ghs_A          131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK  173 (326)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE
T ss_pred             CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE
Confidence            112346666665 467999874        4799998  555543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.30  E-value=0.01  Score=46.09  Aligned_cols=58  Identities=10%  Similarity=-0.089  Sum_probs=35.2

Q ss_pred             CCCCCeEEEEec--CCeEEEEECCcccceeeee-EecCCCEEEEEEeCCEE-EEEecCCcEEEEEc
Q psy16019          2 TSVLPTMWLGSQ--NGSVFVHSAVSQWRRCLHS-IQLKDSVLNIVHVQGRV-VCALADGSVAIFRR   63 (121)
Q Consensus         2 ~~~~~tvwiGt~--~g~I~v~~~~~~~~~~l~~-~~l~~~V~~i~~~~~~v-~v~LanG~l~Vy~r   63 (121)
                      +.....+|++.+  ++.|.+++ .+  .+.+.+ +.+|..+. +.-..++. ++...||.+.++..
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t--~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QG--GSSDDQLLSSPTCYH-IHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CC--CCEEeEEcCCCceEE-EEeCCCceEEEEcCCCCEEEEEC
Confidence            456778999985  57899999 66  466777 77775432 11222223 33345666665543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.26  E-value=0.0046  Score=51.67  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=75.2

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCE------------EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSV------------LNIVHVQGRVVCALADGSVAIFRRGPDG-QWD   70 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V------------~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd   70 (121)
                      ..++|++++.+|.|+.+++.+  =+.+++++.+...            -...+.+++||++..||.|..++...+. .|.
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAAS--GKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTT--CCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCC--ChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeee
Confidence            356899999999999999876  3667777654210            1235578899999999999999765443 354


Q ss_pred             CCCceEEEeCCC--CCcee-EeeeeCCEEEEEeC-------CeEEEEeCCCCcEEEEEE
Q psy16019         71 LSKYHTVTLGLP--HHSVR-SLAAVYNKVWCGYK-------NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        71 ~~~~~~i~lg~~--~~pV~-~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+      .+++  ...+. .-.+.++.++++++       ..|+.+|++|+++.-+++
T Consensus       143 ~~------~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          143 QQ------TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EE------CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ec------cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            32      2221  01111 12346899999875       589999999999987775

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.24  E-value=0.00015  Score=56.04  Aligned_cols=106  Identities=18%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEE-EEeCCEEEEE-ecCCcEEEEEcCCC-CCCCCCC--ceEEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNI-VHVQGRVVCA-LADGSVAIFRRGPD-GQWDLSK--YHTVT   78 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i-~~~~~~v~v~-LanG~l~Vy~r~~~-g~wd~~~--~~~i~   78 (121)
                      ..+.|++|+.+|.|+.++..+  -+.+++++. +.+.+. ...++.+|++ ..||.|..|+...+ ..|....  +..+ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t--G~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT--GSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT--CCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH-
T ss_pred             eCCEEEEEcCCCEEEEEECCC--CCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc-
Confidence            467999999999999999877  466777766 433332 2234545554 79999999977543 3343221  1110 


Q ss_pred             eCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                       ..  .|+.   ..++.|++|+. +.|+.+|++|+++..+++
T Consensus        84 -~~--sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~  119 (369)
T 2hz6_A           84 -QA--SPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLS  119 (369)
T ss_dssp             -TT--CSCC--------CCCCEEEEEEEEECCC---------
T ss_pred             -cc--CceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEec
Confidence             11  2321   13566666655 468888888877765543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.21  E-value=0.035  Score=43.00  Aligned_cols=104  Identities=6%  Similarity=-0.036  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecCC---eEEEEECCcccceeeeeEecCCCEEEEEEeCC--EEE-EEecCCc--EEEEEcCCCCCCCCCCc
Q psy16019          3 SVLPTMWLGSQNG---SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RVV-CALADGS--VAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~g---~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v~-v~LanG~--l~Vy~r~~~g~wd~~~~   74 (121)
                      .....+..++.++   .|++|+....  ++..-...+..+.++.+..+  +++ ++..+|.  |.+|        |++..
T Consensus       188 pdg~~la~~s~~~~~~~i~~~d~~tg--~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~--------d~~~~  257 (415)
T 2hqs_A          188 PDGSKLAYVTFESGRSALVIQTLANG--AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM--------DLASG  257 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTC--CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE--------ETTTC
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCC--cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE--------ECCCC
Confidence            4455677777664   9999998863  33332345678999998743  344 5556666  5555        44444


Q ss_pred             eEEEeCCCCCceeEeeee--CCEEEEEeC-C---eEEEEeCCCCcEEE
Q psy16019         75 HTVTLGLPHHSVRSLAAV--YNKVWCGYK-N---KIHVVDPKSLDVIR  116 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n---~I~Vi~~~tl~i~~  116 (121)
                      +...+......+.++...  ++.|++++. +   +|+++|..+.+.++
T Consensus       258 ~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~  305 (415)
T 2hqs_A          258 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR  305 (415)
T ss_dssp             CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE
T ss_pred             CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE
Confidence            444554434678888776  567888775 2   79999999887543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.14  E-value=0.029  Score=40.43  Aligned_cols=106  Identities=8%  Similarity=-0.034  Sum_probs=67.5

Q ss_pred             CCeEEEEec---CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecC-CcEEEEEcCCCCCCCCCCc-eEE
Q psy16019          5 LPTMWLGSQ---NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALAD-GSVAIFRRGPDGQWDLSKY-HTV   77 (121)
Q Consensus         5 ~~tvwiGt~---~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~-~~i   77 (121)
                      .+.+|+...   .+.|++++.....++.+....+ .....|...  ++++|++-.. +.|.+|.....      .. .++
T Consensus       133 ~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~------~~~~~~  205 (267)
T 1npe_A          133 RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP------GRRKVL  205 (267)
T ss_dssp             TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE------EEEEEE
T ss_pred             CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC------ceEEEe
Confidence            567777664   3688888866532222211111 234566665  4689998865 67999854311      11 122


Q ss_pred             EeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         78 TLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .-+  ..| ..|++.++.||++..  ++|+++|+.++++.+.+.+
T Consensus       206 ~~~--~~P-~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          206 EGL--QYP-FAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             ECC--CSE-EEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred             cCC--CCc-eEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence            322  256 467777899999886  6999999999999888754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.13  E-value=0.033  Score=39.65  Aligned_cols=101  Identities=12%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             CCCeEEEEec-CCeEEEEECCcccceeeeeEecC---CCEEEEEEe-CCEEEEEec-CCcEEEEEcCCCCCCCCCCceEE
Q psy16019          4 VLPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV-QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         4 ~~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~-~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      ..+.+|+++. ++.|+.|+...  +  ...+.+|   ..+.+|... ++.+|++.. +|.|..|...  |     ....+
T Consensus        71 ~~g~l~v~~~~~~~v~~~d~~g--~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g-----~~~~~  139 (300)
T 2qc5_A           71 SLGDIWFTENGANKIGKLSKKG--G--FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--G-----TIYEY  139 (300)
T ss_dssp             TTSCEEEEETTTTEEEEECTTS--C--EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--S-----CEEEE
T ss_pred             CCCCEEEEecCCCeEEEECCCC--C--eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC--C-----CEEEc
Confidence            3467999986 68899998764  2  1234444   467788776 578999876 6788888432  2     11123


Q ss_pred             EeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEEE
Q psy16019         78 TLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVIR  116 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~~  116 (121)
                      .+..+...++.|... .+.||++..  +.|+++|+ +.+...
T Consensus       140 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~  180 (300)
T 2qc5_A          140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE  180 (300)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred             cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE
Confidence            333223456777765 467999884  68999998 666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.12  E-value=0.023  Score=41.94  Aligned_cols=110  Identities=12%  Similarity=0.023  Sum_probs=66.8

Q ss_pred             CCCCeEEEE-ecCCeEEEEECCcccc--eeeeeEe-cC------CCEEEEEEeC--CEEEEEec-CCcEEEEEcCCCCCC
Q psy16019          3 SVLPTMWLG-SQNGSVFVHSAVSQWR--RCLHSIQ-LK------DSVLNIVHVQ--GRVVCALA-DGSVAIFRRGPDGQW   69 (121)
Q Consensus         3 ~~~~tvwiG-t~~g~I~v~~~~~~~~--~~l~~~~-l~------~~V~~i~~~~--~~v~v~La-nG~l~Vy~r~~~g~w   69 (121)
                      .....+++. ..++.|.+|+......  +.+..+. +|      ..+..+.+..  .++||+.. ++.|.+|+...+|. 
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-  274 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-  274 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC-
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc-
Confidence            344557774 5688999998664111  2233332 33      2377777764  36887764 79999997654331 


Q ss_pred             CCCCceEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEE--eCCCCcEEE
Q psy16019         70 DLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVV--DPKSLDVIR  116 (121)
Q Consensus        70 d~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi--~~~tl~i~~  116 (121)
                       +.....+..+.  ..++.++..  ++.|++++.  +.|.++  |+++++++.
T Consensus       275 -~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          275 -LTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             -EEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             -EEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence             11112233322  345677766  567999886  577777  888888774

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.09  E-value=0.011  Score=45.27  Aligned_cols=103  Identities=13%  Similarity=-0.025  Sum_probs=66.9

Q ss_pred             eEEEEecCCeEEEEECCcccce---eeeeEe-cCCCEEEEEEeC----------CEEEEEecCCcEEEEEcCCCCCCCCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRR---CLHSIQ-LKDSVLNIVHVQ----------GRVVCALADGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~---~l~~~~-l~~~V~~i~~~~----------~~v~v~LanG~l~Vy~r~~~g~wd~~   72 (121)
                      .+-.|++|+.|.+|+.......   .+..++ +.+.|.++.+..          ..+..|..|+++.||        |+.
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W--------d~~  174 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW--------RLT  174 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE--------EEE
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE--------ECC
Confidence            4677889999999997763211   122232 457999999862          356667789999997        554


Q ss_pred             Cc-eEEEeCCCCCceeEeeeeC---CEEEEEeC-CeEEEEeCCCCcEEEE
Q psy16019         73 KY-HTVTLGLPHHSVRSLAAVY---NKVWCGYK-NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        73 ~~-~~i~lg~~~~pV~~m~~v~---~~lw~~~g-n~I~Vi~~~tl~i~~~  117 (121)
                      .. ....+-.-..||.++....   +.|..|+. +.|.+.|..+.+....
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~  224 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE  224 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred             CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence            33 2222211237999999884   34666766 5799999998776543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.07  E-value=0.00027  Score=54.61  Aligned_cols=107  Identities=8%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCCceEEEeCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLP   82 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~~~i~lg~~   82 (121)
                      ..+.+++|+.+|.|+.++..+  -+.++++..+..+ ...-.++.+|++..||.|..|+...+. .|..+..   ...  
T Consensus        91 ~~~~v~~g~~dg~v~a~D~~t--G~~~w~~~~~~~~-~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~--  162 (369)
T 2hz6_A           91 SDGILYMGKKQDIWYVIDLLT--GEKQQTLSSAFAD-SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF---DYA--  162 (369)
T ss_dssp             ----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE---EEC--
T ss_pred             cCCEEEEEeCCCEEEEEECCC--CcEEEEecCCCcc-cccccCCEEEEEecCCEEEEEECCCCCEEEeEecc---ccc--
Confidence            356789999999999999886  3566776655422 112267799999999999999765433 3653211   111  


Q ss_pred             CCceeEe-eeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSL-AAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m-~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                       .|+-.- ...++.+++++. +.|+.+|+.|+++.-+++
T Consensus       163 -~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          163 -ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             -CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             -CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence             121100 011277888887 689999999999876654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.06  E-value=0.04  Score=41.05  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=67.3

Q ss_pred             eEEEE-ecCCeEEEEECCcccceeeeeEec-------C---CCEEEEEEe--CCEEEEEec--CCcEEEEEcCCCCCCCC
Q psy16019          7 TMWLG-SQNGSVFVHSAVSQWRRCLHSIQL-------K---DSVLNIVHV--QGRVVCALA--DGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         7 tvwiG-t~~g~I~v~~~~~~~~~~l~~~~l-------~---~~V~~i~~~--~~~v~v~La--nG~l~Vy~r~~~g~wd~   71 (121)
                      .+|+. +.++.|++|+..... ..+..+.-       +   ..+..|...  ++.+||+-+  ++.|.+|..        
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~--------  173 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP--------  173 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT--------
T ss_pred             CEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC--------
Confidence            46665 457899999876521 13343321       1   257788887  578999984  899999942        


Q ss_pred             CCceEEEeCCCC----------CceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         72 SKYHTVTLGLPH----------HSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 ~~~~~i~lg~~~----------~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      +...+..++...          ...+.|++.  ++.||++..  ++|.++|+++++..+.+.
T Consensus       174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            222222333210          124677776  379999886  689999999888887763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.05  E-value=0.0071  Score=50.73  Aligned_cols=108  Identities=14%  Similarity=0.156  Sum_probs=74.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCC-----------E-EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDS-----------V-LNIVHVQGRVVCALADGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~-----------V-~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~   71 (121)
                      .++|++++.++.|+.+++.+  =+.+++++.+..           + ....+.+++||++..||.|..++...+. .|..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARD--GRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTT--CCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCC--CceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            56899999999999999876  366777765421           0 1235678999999999999999775543 3653


Q ss_pred             CCceEEEeCCC--CCcee-EeeeeCCEEEEEeC-------CeEEEEeCCCCcEEEEEE
Q psy16019         72 SKYHTVTLGLP--HHSVR-SLAAVYNKVWCGYK-------NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 ~~~~~i~lg~~--~~pV~-~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~~~~  119 (121)
                      +..    . ++  ...+. +-.+.++.++++++       +.|+.+|++|+++.=+++
T Consensus       148 ~~~----~-~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          148 DTR----A-DHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             ECC----S-CTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cCc----C-CCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            221    0 11  01111 12346899999874       589999999999887665

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.05  E-value=0.014  Score=43.23  Aligned_cols=104  Identities=10%  Similarity=-0.025  Sum_probs=60.4

Q ss_pred             CCeEEEEec-CCeEEEEECCcccceeeeeEecCCC-------EE--EEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc
Q psy16019          5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLKDS-------VL--NIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~~~-------V~--~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~   74 (121)
                      ..++...+. +++++.++...   +.++++.+...       ..  ......+.+++...||.|.+|.+...-.|..   
T Consensus        88 G~~lv~~~~~~~~v~~vd~~G---k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~---  161 (276)
T 3no2_A           88 GNALVAWCGHPSTILEVNMKG---EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV---  161 (276)
T ss_dssp             SCEEEEEESTTEEEEEECTTS---CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEE---
T ss_pred             CCEEEEecCCCCEEEEEeCCC---CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEE---
Confidence            345555555 78888887644   45565554311       11  2223456677777899999996541112332   


Q ss_pred             eEEEeCCCCCceeEeeeeCCE-EEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         75 HTVTLGLPHHSVRSLAAVYNK-VWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        75 ~~i~lg~~~~pV~~m~~v~~~-lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                         ..+.  .|-......++. +.++.+ ++|+.+|+.|+++..++.
T Consensus       162 ---~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          162 ---KLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             ---ECSS--CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             ---ECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence               2222  333333333444 444554 479999999999988775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.04  E-value=0.0042  Score=45.24  Aligned_cols=99  Identities=13%  Similarity=0.140  Sum_probs=58.2

Q ss_pred             CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeee
Q psy16019         14 NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAA   91 (121)
Q Consensus        14 ~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~   91 (121)
                      .+.|+.++.....+.   .......+..|...  .+.+++...++.|.+|+...+|... ...+.+  ......++.|+.
T Consensus       152 ~~~l~~~~~~g~~~~---~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~-~~~~~~--~~~~~~p~~i~~  225 (296)
T 3e5z_A          152 GRWVFRLAPDGTLSA---PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE-YQGVHF--TVEPGKTDGLRV  225 (296)
T ss_dssp             SCEEEEECTTSCEEE---EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE-EEEEEE--CCSSSCCCSEEE
T ss_pred             CcEEEEECCCCCEEE---eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc-CCCeEe--eCCCCCCCeEEE
Confidence            468888876531111   11222345566665  3345555667899999766444210 122333  112234456776


Q ss_pred             e-CCEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019         92 V-YNKVWCGYKNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        92 v-~~~lw~~~gn~I~Vi~~~tl~i~~~~~  119 (121)
                      . ++.||++.++.|.++|++ ++....+.
T Consensus       226 d~~G~l~v~~~~~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          226 DAGGLIWASAGDGVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             BTTSCEEEEETTEEEEECTT-SCEEEEEE
T ss_pred             CCCCCEEEEcCCeEEEECCC-CCEEEEEE
Confidence            6 578999999999999997 66666554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.99  E-value=0.017  Score=40.93  Aligned_cols=101  Identities=12%  Similarity=0.075  Sum_probs=63.3

Q ss_pred             CCeEEEEec-CCeEEEEECCcccceeeeeEecC-CCEEEEEEeC-CEEEEEec-CCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ-GRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~-~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      .+.+|+++. ++.|++|+....  +.......+ ..+.+|.... +.+|++.. ++.|.+|....        .......
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--------~~~~~~~  229 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESN--NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--------TTSTVLP  229 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTC--CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC--------SCCEECC
T ss_pred             CCCEEEEECCCCEEEEEecCCC--ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC--------Ccceeec
Confidence            346999875 689999997763  221111112 4677888764 48999875 67899985432        1111121


Q ss_pred             CC-CCceeEeeee-CCEEEEEeC--CeEEEEeCCCCcEE
Q psy16019         81 LP-HHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSLDVI  115 (121)
Q Consensus        81 ~~-~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl~i~  115 (121)
                      .. ...+.+|+.. +++||++..  ++|.+++...-+.+
T Consensus       230 ~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          230 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence            11 1345677765 467999876  78999988765543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=96.98  E-value=0.03  Score=44.36  Aligned_cols=105  Identities=14%  Similarity=0.073  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCccc---------ceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQW---------RRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~---------~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~   72 (121)
                      ++..+.+..|+.+ ++.|+++.+-.         -+....+.+|+ |..+.+.++.++|+ .+|.|.+|+-.+-     .
T Consensus        46 s~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl-----~  117 (388)
T 1xip_A           46 SNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEEL-----S  117 (388)
T ss_dssp             ETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSST-----T
T ss_pred             cCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhh-----h
Confidence            3456677788876 56668865532         12234567889 99999977788888 9999999954321     1


Q ss_pred             CceEEEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019         73 KYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIR  116 (121)
Q Consensus        73 ~~~~i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~  116 (121)
                      ....+..-.  .++.++......+.++.. +.++++|..+.+.++
T Consensus       118 ~~~~~~~~~--~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A          118 EFRTVTSFE--KPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             CEEEEEECS--SCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccCccceee--cceeeEEecCCCEEEEECCCCEEEEEccCCcccc
Confidence            222333333  577777777666776666 689999998877654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.93  E-value=0.0067  Score=46.43  Aligned_cols=101  Identities=11%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             CeEEEEe------cCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEec----------CCcEEEEEcCCCC
Q psy16019          6 PTMWLGS------QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALA----------DGSVAIFRRGPDG   67 (121)
Q Consensus         6 ~tvwiGt------~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~La----------nG~l~Vy~r~~~g   67 (121)
                      ..+++-.      .|+.|++|+...  .+.+.+++..... .|...  ..++||+..          +++|.+|      
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t--~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~------   86 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTN--GKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVW------   86 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTT--CCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEE------
T ss_pred             CEEEEECCCCCccccCeEEEEECCC--CeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEE------
Confidence            4677754      367999999766  3556666655333 67776  448999973          5679998      


Q ss_pred             CCCCCCc---eEEEeCCC----CCceeEeeee--CCEEEEEe---CCeEEEEeCCCCcEEEE
Q psy16019         68 QWDLSKY---HTVTLGLP----HHSVRSLAAV--YNKVWCGY---KNKIHVVDPKSLDVIRP  117 (121)
Q Consensus        68 ~wd~~~~---~~i~lg~~----~~pV~~m~~v--~~~lw~~~---gn~I~Vi~~~tl~i~~~  117 (121)
                        |....   ..+.++..    ......|.+.  ++.||+++   .+.|.|||++++++.+.
T Consensus        87 --d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           87 --DADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             --ETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             --ECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence              44433   33555421    0122345544  68999987   36899999999988776

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.92  E-value=0.037  Score=41.44  Aligned_cols=109  Identities=10%  Similarity=0.074  Sum_probs=63.9

Q ss_pred             CCeEEEEec-------CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEe-cCCcEEEEEcC-CCCCCCCCC
Q psy16019          5 LPTMWLGSQ-------NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCAL-ADGSVAIFRRG-PDGQWDLSK   73 (121)
Q Consensus         5 ~~tvwiGt~-------~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~L-anG~l~Vy~r~-~~g~wd~~~   73 (121)
                      .+.+|+|+.       .+.|+.++ ....+. +  ..-......|...  .+.+|++- .++.|.+|+.. .+| +.+..
T Consensus       144 ~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~--~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G-l~~~~  218 (326)
T 2ghs_A          144 SGALWIGTMGRKAETGAGSIYHVA-KGKVTK-L--FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG-LPTGK  218 (326)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-E--EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC-CBSSC
T ss_pred             CCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-e--eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC-CcccC
Confidence            456999985       37899998 331111 1  1111234456665  33677765 46889999865 233 12233


Q ss_pred             ceEE-EeCCCCCceeEeeee-CCEEEEEe--CCeEEEEeCCCCcEEEEEE
Q psy16019         74 YHTV-TLGLPHHSVRSLAAV-YNKVWCGY--KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        74 ~~~i-~lg~~~~pV~~m~~v-~~~lw~~~--gn~I~Vi~~~tl~i~~~~~  119 (121)
                      .+.+ .+.........|... ++.||++.  +++|+++|+ +.+..+.+.
T Consensus       219 ~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          219 AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            3333 443222334566665 57899998  578999999 566666554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.85  E-value=0.036  Score=40.85  Aligned_cols=107  Identities=12%  Similarity=0.068  Sum_probs=65.3

Q ss_pred             eEEEEec---CCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEe-cCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          7 TMWLGSQ---NGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         7 tvwiGt~---~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .++...+   ++.|++|+......+.+..+. ....+..+....  .++|++. .+|++.+|+...+|..  .....+..
T Consensus        52 ~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~--~~~~~~~~  129 (347)
T 3hfq_A           52 CLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL--TLTDTVQH  129 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE--EEEEEEEC
T ss_pred             eEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe--eecceeec
Confidence            3777776   589999998543223444432 345677777764  4689888 7799999977554421  11111222


Q ss_pred             CCC-------CCceeEeeee-CCEEEEEeC--CeEEEEeCC-CCcEE
Q psy16019         80 GLP-------HHSVRSLAAV-YNKVWCGYK--NKIHVVDPK-SLDVI  115 (121)
Q Consensus        80 g~~-------~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~-tl~i~  115 (121)
                      ...       ...+.++... ++++|++..  ++|.+++.. +.++.
T Consensus       130 ~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A          130 SGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS  176 (347)
T ss_dssp             CCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence            110       1236777776 244888765  689999987 55544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.83  E-value=0.035  Score=40.06  Aligned_cols=100  Identities=3%  Similarity=0.013  Sum_probs=62.0

Q ss_pred             CCeEEEEe-cCCeEEEEECCcccc-eeeeeE-ecC----CCEEEEEEe-CCEEEEEe-cCCcEEEEEcCCCCCCCCCCce
Q psy16019          5 LPTMWLGS-QNGSVFVHSAVSQWR-RCLHSI-QLK----DSVLNIVHV-QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         5 ~~tvwiGt-~~g~I~v~~~~~~~~-~~l~~~-~l~----~~V~~i~~~-~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      ...+|++. .++.|++|+....-+ .....+ .++    ..+..|... ++.+|++. .+|.|.+|....+     ....
T Consensus       187 g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g-----~~~~  261 (314)
T 1pjx_A          187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-----QPKM  261 (314)
T ss_dssp             EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-----SCSE
T ss_pred             CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC-----cEeE
Confidence            34788885 679999998652101 111111 233    346667765 46899987 5788999843311     1123


Q ss_pred             EEEeCCCCCceeEeeee--CCEEEEEeCC--eEEEEeCCC
Q psy16019         76 TVTLGLPHHSVRSLAAV--YNKVWCGYKN--KIHVVDPKS  111 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v--~~~lw~~~gn--~I~Vi~~~t  111 (121)
                      .+.+..  ..+.+++..  ++.||++..+  .|+.++..+
T Consensus       262 ~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          262 RIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            344433  567777764  3569999886  999999875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.80  E-value=0.026  Score=46.37  Aligned_cols=113  Identities=13%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCC-----CEE-EEEEeCCEEEEEec------CCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-----SVL-NIVHVQGRVVCALA------DGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-----~V~-~i~~~~~~v~v~La------nG~l~Vy~r~~~g-~wd~   71 (121)
                      .+.|++|+.+|.|+.+++.+  -+.+++.++++     .+. .-...++.||++..      +|.|..|+...+. .|..
T Consensus       115 ~~~v~v~~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKT--GKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTT--CCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCC--CCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            56899999999999999876  35667766543     222 11235789999997      7999999776543 3533


Q ss_pred             CCceE-EEe-CCC----C------------------------CceeEeeee--CCEEEEEeCC-----------------
Q psy16019         72 SKYHT-VTL-GLP----H------------------------HSVRSLAAV--YNKVWCGYKN-----------------  102 (121)
Q Consensus        72 ~~~~~-i~l-g~~----~------------------------~pV~~m~~v--~~~lw~~~gn-----------------  102 (121)
                      ....- ... ..|    .                        .+-..+++.  .+.++.+.+|                 
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            21100 000 000    0                        000123332  4789998864                 


Q ss_pred             eEEEEeCCCCcEEEEEE
Q psy16019        103 KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus       103 ~I~Vi~~~tl~i~~~~~  119 (121)
                      .|+.+|++|+++.-+++
T Consensus       273 ~v~Ald~~tG~~~W~~~  289 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQ  289 (571)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             EEEEEecCCCcEEEEec
Confidence            59999999999987765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.77  E-value=0.023  Score=46.89  Aligned_cols=106  Identities=12%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCE----------EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSV----------LNIVHVQGRVVCALADGSVAIFRRGPDG-QWDLSK   73 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V----------~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~~   73 (121)
                      .++|++++.++.|+.+++.+  =+.++++.++.+.          ....+.+++||++..||.|..++...+. .|..  
T Consensus        68 ~g~vyv~~~~~~v~AlD~~t--G~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~--  143 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKT--GKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKK--  143 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSS--CCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEE--
T ss_pred             CCEEEEEcCCCCEEEEECCC--CcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeee--
Confidence            46899999967788899876  3667877665321          1234678999999999999999765543 3542  


Q ss_pred             ceEEEeCCC--CCcee-EeeeeCC------EEEEEe-------CCeEEEEeCCCCcEEEEE
Q psy16019         74 YHTVTLGLP--HHSVR-SLAAVYN------KVWCGY-------KNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        74 ~~~i~lg~~--~~pV~-~m~~v~~------~lw~~~-------gn~I~Vi~~~tl~i~~~~  118 (121)
                          .++.+  ...+. .-.+.++      .|++++       .+.|+.+|++|+++.=++
T Consensus       144 ----~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          144 ----KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             ----ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             ----cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence                22221  01111 1123455      899987       368999999999986544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.75  E-value=0.095  Score=38.30  Aligned_cols=109  Identities=11%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CCeEEEEecC-------CeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC--EEEEEe-cCCcEEEEEcCCCCCCCCCC
Q psy16019          5 LPTMWLGSQN-------GSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG--RVVCAL-ADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         5 ~~tvwiGt~~-------g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~--~v~v~L-anG~l~Vy~r~~~g~wd~~~   73 (121)
                      .+.+|+++..       +.|+.++....  + ...+ .-...+..|....+  .+|++. .++.|.+|+...+|.. +..
T Consensus       145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-~~~  220 (333)
T 2dg1_A          145 KGGFYFTDFRGYSTNPLGGVYYVSPDFR--T-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-IQP  220 (333)
T ss_dssp             TSCEEEEECCCBTTBCCEEEEEECTTSC--C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-EEE
T ss_pred             CCCEEEEeccccccCCCceEEEEeCCCC--E-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-ccc
Confidence            4579999873       78888886541  2 1111 11234566776543  588775 4789999977543310 000


Q ss_pred             c--eE-EEeCCCCCceeEeeee-CCEEEEEe--CCeEEEEeCCCCcEEEEEE
Q psy16019         74 Y--HT-VTLGLPHHSVRSLAAV-YNKVWCGY--KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        74 ~--~~-i~lg~~~~pV~~m~~v-~~~lw~~~--gn~I~Vi~~~tl~i~~~~~  119 (121)
                      .  .. ..+.. ...+..|... ++.+|++.  .+.|+++|+ +.+..+.+.
T Consensus       221 ~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~  270 (333)
T 2dg1_A          221 FGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  270 (333)
T ss_dssp             EEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             ccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence            0  11 12211 1345667766 47899987  468999998 455555554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.73  E-value=0.078  Score=36.99  Aligned_cols=108  Identities=9%  Similarity=-0.105  Sum_probs=64.8

Q ss_pred             CCCeEE-EEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC--EEEEEe-cCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          4 VLPTMW-LGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG--RVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         4 ~~~tvw-iGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~--~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      ....+. .+..++.+.||.......+ ...+ ..+..+.++.+..+  .++++. .+|.+.+|....+      ......
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~------~~~~~~  211 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD------GSSVER  211 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT------SSCEEE
T ss_pred             CCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCC------CCCcEE
Confidence            344454 6778897777764321122 2233 44578888888643  455555 5888888865422      222333


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC------------CeEEEEeCCCCcEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK------------NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g------------n~I~Vi~~~tl~i~~~~  118 (121)
                      +.....++.++...  ++.|+++..            ..|+++|..+.+.....
T Consensus       212 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          212 ITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             CCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            43333677777665  466766554            46999999998765543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.72  E-value=0.033  Score=46.56  Aligned_cols=112  Identities=13%  Similarity=0.179  Sum_probs=73.3

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-C-----CEE-EEEEeCCEEEEEec------CCcEEEEEcCCCC-CCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-D-----SVL-NIVHVQGRVVCALA------DGSVAIFRRGPDG-QWD   70 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~-----~V~-~i~~~~~~v~v~La------nG~l~Vy~r~~~g-~wd   70 (121)
                      .+.|++|+.+|.|+.+++.+  -+.+++++++ +     .++ .-...++.||++..      +|.|..|+...+. .|.
T Consensus       128 ~~~v~v~~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAAT--GKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTT--CCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCC--CCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            56899999999999999877  3667777765 2     111 12345889999986      6899999765443 353


Q ss_pred             CCCceEE------------------------E--eCCCCCceeEeee--eCCEEEEEeCC--------------------
Q psy16019         71 LSKYHTV------------------------T--LGLPHHSVRSLAA--VYNKVWCGYKN--------------------  102 (121)
Q Consensus        71 ~~~~~~i------------------------~--lg~~~~pV~~m~~--v~~~lw~~~gn--------------------  102 (121)
                      .+...-.                        .  -|.  .....+.+  .++.|+++.++                    
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~--~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGG--TMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEEC--CCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCc--ccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            2211000                        0  000  01122333  36899999886                    


Q ss_pred             eEEEEeCCCCcEEEEEEe
Q psy16019        103 KIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus       103 ~I~Vi~~~tl~i~~~~~~  120 (121)
                      .|+.+|++|+++.-+++.
T Consensus       284 sv~AlD~~TG~~~W~~~~  301 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQE  301 (677)
T ss_dssp             EEEEECTTTCCEEEEEES
T ss_pred             EEEEEECCCCCEEEEEec
Confidence            399999999999877763

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.68  E-value=0.021  Score=47.59  Aligned_cols=107  Identities=15%  Similarity=0.166  Sum_probs=73.2

Q ss_pred             CCeEEEEec-CCeEEEEEC-CcccceeeeeEecCCCE------------EEEEE--eCCE----EEEEecCCcEEEEEcC
Q psy16019          5 LPTMWLGSQ-NGSVFVHSA-VSQWRRCLHSIQLKDSV------------LNIVH--VQGR----VVCALADGSVAIFRRG   64 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~-~~~~~~~l~~~~l~~~V------------~~i~~--~~~~----v~v~LanG~l~Vy~r~   64 (121)
                      .++|++++. ++.|+-+++ .+  -+.+++.+++...            ..+.+  .+++    ||++..||.|..++..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~t--G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDP--GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCT--TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCC--CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            468999999 899999998 55  3667777654211            12345  5667    9999999999999765


Q ss_pred             CCC-CCCCCCceEEEeCCC--CCcee-EeeeeCCEEEEEe-------CCeEEEEeCCCCcEEEEEE
Q psy16019         65 PDG-QWDLSKYHTVTLGLP--HHSVR-SLAAVYNKVWCGY-------KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        65 ~~g-~wd~~~~~~i~lg~~--~~pV~-~m~~v~~~lw~~~-------gn~I~Vi~~~tl~i~~~~~  119 (121)
                      .+. .|..      .++++  ...+. .-++.++.|++++       .+.|+.+|++|+++.=+++
T Consensus       140 TG~~~W~~------~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          140 TGETVWKV------ENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             TCCEEEEE------ECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEee------cCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            443 3642      22220  01221 1234689999987       3689999999999886665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.61  E-value=0.092  Score=38.46  Aligned_cols=100  Identities=8%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeC--
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLG--   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg--   80 (121)
                      +...|+...++.|+.|+...   .....+.++..+.+|... +++++++. ++.|.+|+... +     ....+ ...  
T Consensus        25 ~~l~~~d~~~~~i~~~d~~~---~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~-g-----~~~~~~~~~~~   94 (297)
T 3g4e_A           25 NSLLFVDIPAKKVCRWDSFT---KQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKE-Q-----SAVVLATVDND   94 (297)
T ss_dssp             TEEEEEETTTTEEEEEETTT---CCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTT-T-----EEEEEEECCTT
T ss_pred             CEEEEEECCCCEEEEEECCC---CcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCC-C-----cEEEEEecCCC
Confidence            45788888999999999876   223456778889898876 45788887 55688884322 1     11222 221  


Q ss_pred             CCCCceeEeeee-CCEEEEEeC-------------CeEEEEeCCCCcEE
Q psy16019         81 LPHHSVRSLAAV-YNKVWCGYK-------------NKIHVVDPKSLDVI  115 (121)
Q Consensus        81 ~~~~pV~~m~~v-~~~lw~~~g-------------n~I~Vi~~~tl~i~  115 (121)
                      .+...+..+... .+++|++..             ..|+.+++. +++.
T Consensus        95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~  142 (297)
T 3g4e_A           95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK  142 (297)
T ss_dssp             CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE
T ss_pred             CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE
Confidence            112335556655 477999862             379999875 3443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.58  E-value=0.11  Score=38.37  Aligned_cols=104  Identities=9%  Similarity=0.098  Sum_probs=63.4

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec---------------------CCCEEEEEEe--CCEEEEEecCCcEEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL---------------------KDSVLNIVHV--QGRVVCALADGSVAI   60 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l---------------------~~~V~~i~~~--~~~v~v~LanG~l~V   60 (121)
                      .+..+|+++.+|.|+.|+....  + ...+..                     ...+..|...  ++++||+...+.|..
T Consensus        29 ~g~~l~v~~~~~~i~~~~~~~~--~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~  105 (322)
T 2fp8_A           29 TNKGFYTSVQDGRVIKYEGPNS--G-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSV  105 (322)
T ss_dssp             TCSSEEEECTTSEEEEECCTTT--C-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred             CCCEEEEEcCCCeEEEECCCCC--c-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEE
Confidence            3445999999999999987652  1 222221                     1357788877  589999977766777


Q ss_pred             EEcCCCCCCCCCCceEEE--eC-CCCCceeEeeee--CCEEEEEeC-------------------CeEEEEeCCCCcEEE
Q psy16019         61 FRRGPDGQWDLSKYHTVT--LG-LPHHSVRSLAAV--YNKVWCGYK-------------------NKIHVVDPKSLDVIR  116 (121)
Q Consensus        61 y~r~~~g~wd~~~~~~i~--lg-~~~~pV~~m~~v--~~~lw~~~g-------------------n~I~Vi~~~tl~i~~  116 (121)
                      |.... +     ..+.+.  .. .+......|+..  ++.||++..                   ++|+.+|+.+.+++.
T Consensus       106 ~d~~~-g-----~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          106 VGSEG-G-----HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             ECTTC-E-----ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             EeCCC-C-----EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            73221 1     112221  11 111123445554  478999863                   469999998887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.49  E-value=0.15  Score=40.26  Aligned_cols=106  Identities=8%  Similarity=-0.014  Sum_probs=63.0

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec----CCCEEEEEEe-CCEEEE-------------EecCCcEEEEEcCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL----KDSVLNIVHV-QGRVVC-------------ALADGSVAIFRRGP   65 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l----~~~V~~i~~~-~~~v~v-------------~LanG~l~Vy~r~~   65 (121)
                      .+..+--|+.|+.|.||++..  .+++++++-    ...|.++.+. ++..++             |..|+++.+|    
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~T--Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW----  265 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKT--GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI----  265 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTT--CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE----
T ss_pred             CCceEEEecCCCcEEEEECCC--CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE----
Confidence            456777789999999999987  577888752    2356655555 344443             3345566665    


Q ss_pred             CCCCCCCCceEE---EeCCC-C--CceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         66 DGQWDLSKYHTV---TLGLP-H--HSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        66 ~g~wd~~~~~~i---~lg~~-~--~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                          |...-+.+   .+..| .  ..+.+-...+..+..|+. +.|+|-|..+++..++|+
T Consensus       266 ----d~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~  322 (356)
T 2w18_A          266 ----NPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP  322 (356)
T ss_dssp             ----ETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             ----ECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEec
Confidence                44444332   21111 1  112222222344555554 689999999999988874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.44  E-value=0.036  Score=46.47  Aligned_cols=109  Identities=19%  Similarity=0.281  Sum_probs=71.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-C-----CEE-EEEEeCCEEEEEec------CCcEEEEEcCCCC-CCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-D-----SVL-NIVHVQGRVVCALA------DGSVAIFRRGPDG-QWD   70 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~-----~V~-~i~~~~~~v~v~La------nG~l~Vy~r~~~g-~wd   70 (121)
                      .+.|++|+.+|.|+.+++.+  =+.+++++.. +     .+. .-...++.||++.+      +|.|..|+...+. .|.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~T--G~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKT--GQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTT--CCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCC--CCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            56899999999999999876  3566666553 1     111 11235889999875      6889999776544 364


Q ss_pred             CCCceEEEeCCCC---------------------------CceeEeee--eCCEEEEEeCC-------------------
Q psy16019         71 LSKYHTVTLGLPH---------------------------HSVRSLAA--VYNKVWCGYKN-------------------  102 (121)
Q Consensus        71 ~~~~~~i~lg~~~---------------------------~pV~~m~~--v~~~lw~~~gn-------------------  102 (121)
                      .....    ++|.                           ..-..+..  ..+.|+++.+|                   
T Consensus       199 ~~~~~----~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          199 FYTVP----GDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             EESSC----CCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             ecccC----CCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            32100    1110                           01113333  35899999887                   


Q ss_pred             -eEEEEeCCCCcEEEEEE
Q psy16019        103 -KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus       103 -~I~Vi~~~tl~i~~~~~  119 (121)
                       .|+.+|++|+++.=+++
T Consensus       275 ~~v~AlD~~TG~~~W~~~  292 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHYQ  292 (689)
T ss_dssp             TEEEEEETTTCCEEEEEE
T ss_pred             eeEEEEEccCCceeEeee
Confidence             39999999999987765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.43  E-value=0.057  Score=44.90  Aligned_cols=110  Identities=14%  Similarity=0.105  Sum_probs=70.5

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecCC-----CEEE-EEEeCCEEEEEec------CCcEEEEEcCCCC-CCCCCCc
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-----SVLN-IVHVQGRVVCALA------DGSVAIFRRGPDG-QWDLSKY   74 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-----~V~~-i~~~~~~v~v~La------nG~l~Vy~r~~~g-~wd~~~~   74 (121)
                      |++|+.+|.|+.+++.+  =+.+++.++++     .+++ -...++.||++.+      +|.|..|+...+. .|..+..
T Consensus       124 V~v~t~dg~l~AlDa~T--G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAET--GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTT--CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCC--CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            99999999999999876  35667666543     2221 1235789999985      8999999776543 3533221


Q ss_pred             eE-E--EeCC---CCCce------------------------eEeee--eCCEEEEEeCC-----------------eEE
Q psy16019         75 HT-V--TLGL---PHHSV------------------------RSLAA--VYNKVWCGYKN-----------------KIH  105 (121)
Q Consensus        75 ~~-i--~lg~---~~~pV------------------------~~m~~--v~~~lw~~~gn-----------------~I~  105 (121)
                      .- .  .++.   ...|+                        ..+++  ..+.|+++.+|                 .|+
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            10 0  0000   00011                        12233  46899999886                 799


Q ss_pred             EEeCCCCcEEEEEE
Q psy16019        106 VVDPKSLDVIRPVT  119 (121)
Q Consensus       106 Vi~~~tl~i~~~~~  119 (121)
                      .+|++|+++.=+++
T Consensus       282 Ald~~TG~~~W~~q  295 (599)
T 1w6s_A          282 GRDADTGEAKFGYQ  295 (599)
T ss_dssp             EEETTTCCEEEEEE
T ss_pred             EEeCCCCceeeEee
Confidence            99999999987665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.42  E-value=0.096  Score=38.74  Aligned_cols=99  Identities=8%  Similarity=0.034  Sum_probs=59.7

Q ss_pred             CCCCeEEEE-ecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe-CCEEEEEecC-----------CcEEEEEcCCCCC
Q psy16019          3 SVLPTMWLG-SQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV-QGRVVCALAD-----------GSVAIFRRGPDGQ   68 (121)
Q Consensus         3 ~~~~tvwiG-t~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~-~~~v~v~Lan-----------G~l~Vy~r~~~g~   68 (121)
                      .....+|+. +.+++|++|+...........+ .++. ...|... ++.+||+...           |.|.+|..  +| 
T Consensus       194 ~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~--~G-  269 (322)
T 2fp8_A          194 ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE--FG-  269 (322)
T ss_dssp             TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT--TS-
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC--CC-
Confidence            345679988 5678999999775211111111 3444 5556654 4579999865           56777732  22 


Q ss_pred             CCCCCceEEEeCCC----CCceeEeeeeCCEEEEEeC--CeEEEEeCC
Q psy16019         69 WDLSKYHTVTLGLP----HHSVRSLAAVYNKVWCGYK--NKIHVVDPK  110 (121)
Q Consensus        69 wd~~~~~~i~lg~~----~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~  110 (121)
                           ..+-.+..|    ...+.++...+++||++..  +.|.++++.
T Consensus       270 -----~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          270 -----NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             -----CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred             -----CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence                 122223322    1345566667899999954  789999875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.37  E-value=0.24  Score=38.27  Aligned_cols=90  Identities=9%  Similarity=-0.026  Sum_probs=59.3

Q ss_pred             CeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC--EEEEEecCC---cEEEEEcCCCCCCCCCCceEEEeCCCCCceeE
Q psy16019         15 GSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG--RVVCALADG---SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRS   88 (121)
Q Consensus        15 g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~--~v~v~LanG---~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~   88 (121)
                      +.|++++...   ++...+ ..++.|.++.+..+  +++.+..++   .|.+|        |++..+...+.....++.+
T Consensus       159 ~~i~i~d~~g---~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~--------d~~tg~~~~l~~~~~~~~~  227 (415)
T 2hqs_A          159 YELRVSDYDG---YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ--------TLANGAVRQVASFPRHNGA  227 (415)
T ss_dssp             EEEEEEETTS---CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEE--------ETTTCCEEEEECCSSCEEE
T ss_pred             ceEEEEcCCC---CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEE--------ECCCCcEEEeecCCCcccC
Confidence            7999999875   333444 45678999998743  455555553   77776        4444444444333367888


Q ss_pred             eeee--CCEEEEEeC----CeEEEEeCCCCcEE
Q psy16019         89 LAAV--YNKVWCGYK----NKIHVVDPKSLDVI  115 (121)
Q Consensus        89 m~~v--~~~lw~~~g----n~I~Vi~~~tl~i~  115 (121)
                      +...  ++.|.++..    ..|+++|..+.+..
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~  260 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  260 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECCCCCEE
Confidence            8877  466775442    46999999998764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=96.33  E-value=0.055  Score=44.16  Aligned_cols=107  Identities=11%  Similarity=0.044  Sum_probs=66.6

Q ss_pred             CCCCCeEEEEec-CC-----eEEEEECCcccceeeeeEecC-------------------------CCEEEEEEeCC--E
Q psy16019          2 TSVLPTMWLGSQ-NG-----SVFVHSAVSQWRRCLHSIQLK-------------------------DSVLNIVHVQG--R   48 (121)
Q Consensus         2 ~~~~~tvwiGt~-~g-----~I~v~~~~~~~~~~l~~~~l~-------------------------~~V~~i~~~~~--~   48 (121)
                      +.....+..++. +|     .|++++....  +....+..+                         ..|.++.+..+  +
T Consensus        45 SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~  122 (741)
T 2ecf_A           45 APDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR  122 (741)
T ss_dssp             CTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred             ecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence            345667888887 88     8999998773  322222221                         12566666533  3


Q ss_pred             EEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         49 VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        49 v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                      ++++. +|+|.+|+.....     .+....+.....+++++...  ++.|.++..++|+++|..+.+..+
T Consensus       123 l~~~~-~~~i~~~d~~~~~-----~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          123 LLFPL-GGELYLYDLKQEG-----KAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EEEEE-TTEEEEEESSSCS-----TTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             EEEEe-CCcEEEEECCCCC-----cceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence            44443 4889888654321     00222232223678877766  577888888999999999987654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.31  E-value=0.06  Score=39.54  Aligned_cols=97  Identities=9%  Similarity=0.085  Sum_probs=54.6

Q ss_pred             CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecC------CcEEEEEcCCCCCCCCCCceEE-EeCCCCC
Q psy16019         14 NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALAD------GSVAIFRRGPDGQWDLSKYHTV-TLGLPHH   84 (121)
Q Consensus        14 ~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~Lan------G~l~Vy~r~~~g~wd~~~~~~i-~lg~~~~   84 (121)
                      .+.|+.|+..+..-+.+.  .+ .....|...  +..+|++-.+      +.|.+|....++   +.+.+.+ ....  .
T Consensus       168 ~~~v~~~d~~~g~~~~~~--~~-~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~~~--~  239 (305)
T 3dr2_A          168 HHSVYRLPPDGSPLQRMA--DL-DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASVPD--G  239 (305)
T ss_dssp             CEEEEEECSSSCCCEEEE--EE-SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECCSS--S
T ss_pred             CCeEEEEcCCCCcEEEEe--cC-CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEECCC--C
Confidence            367888887542111111  22 233445555  3369998776      689998665433   2222222 1111  1


Q ss_pred             ceeEeeee-CCEEEEEeCCeEEEEeCCCCcEEEEEE
Q psy16019         85 SVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        85 pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~~~~~  119 (121)
                      -...|... ++.||++.++.|+++|++ ++....+.
T Consensus       240 ~pdgi~~d~~G~lwv~~~~gv~~~~~~-g~~~~~~~  274 (305)
T 3dr2_A          240 LPDGFCVDRGGWLWSSSGTGVCVFDSD-GQLLGHIP  274 (305)
T ss_dssp             CCCSEEECTTSCEEECCSSEEEEECTT-SCEEEEEE
T ss_pred             CCCeEEECCCCCEEEecCCcEEEECCC-CCEEEEEE
Confidence            22345554 467999999999999994 55555554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.30  E-value=0.21  Score=36.94  Aligned_cols=106  Identities=12%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             CCCCeEEEEecC----CeEEEEECCcc--cceeeeeEecC-CCEEEEEEeCCEEEEEe-cCCcEEEEEcCCCCCCCCCCc
Q psy16019          3 SVLPTMWLGSQN----GSVFVHSAVSQ--WRRCLHSIQLK-DSVLNIVHVQGRVVCAL-ADGSVAIFRRGPDGQWDLSKY   74 (121)
Q Consensus         3 ~~~~tvwiGt~~----g~I~v~~~~~~--~~~~l~~~~l~-~~V~~i~~~~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~   74 (121)
                      .....++.+.++    |.|.+|+....  .-+.+..+... ..+..+...++++|++. .+|++.+|+...++..  ...
T Consensus        59 pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~--~~~  136 (361)
T 3scy_A           59 ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGAL--LPA  136 (361)
T ss_dssp             TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCB--CSC
T ss_pred             CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcC--ccc
Confidence            445678888885    89999886542  11334444433 45666666666788887 5789999988765532  222


Q ss_pred             -eEEEe-CCCC-------CceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019         75 -HTVTL-GLPH-------HSVRSLAAV--YNKVWCGYK--NKIHVVDPK  110 (121)
Q Consensus        75 -~~i~l-g~~~-------~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~  110 (121)
                       ..+.. +..+       ..+.++...  ++.|++++.  +.|.+++..
T Consensus       137 ~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          137 SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence             22222 2111       123566665  467888774  678887554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.27  E-value=0.065  Score=44.69  Aligned_cols=110  Identities=19%  Similarity=0.307  Sum_probs=72.0

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCC-----CEE-EEEEeCCEEEEEec------CCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD-----SVL-NIVHVQGRVVCALA------DGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~-----~V~-~i~~~~~~v~v~La------nG~l~Vy~r~~~g-~wd~   71 (121)
                      .+.|++|+.+|.|+.+++.+  -+.++++++.+     .+. .-...++.||++..      +|.|..|+...+. .|..
T Consensus       117 ~~~v~v~~~dg~l~alD~~t--G~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKT--GKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTT--CCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCC--CCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            56899999999999999877  36677766531     111 11235889999986      4889999776543 3643


Q ss_pred             CCceEEEeCCCC---------------------------CceeEeee--eCCEEEEEeCCe-------------------
Q psy16019         72 SKYHTVTLGLPH---------------------------HSVRSLAA--VYNKVWCGYKNK-------------------  103 (121)
Q Consensus        72 ~~~~~i~lg~~~---------------------------~pV~~m~~--v~~~lw~~~gn~-------------------  103 (121)
                      +...    ++|.                           .....+++  ..+.+|++.+|.                   
T Consensus       195 ~~~~----~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          195 YTVP----GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             ESSC----CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             cccC----CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            2110    1110                           01112333  358899998863                   


Q ss_pred             -EEEEeCCCCcEEEEEEe
Q psy16019        104 -IHVVDPKSLDVIRPVTI  120 (121)
Q Consensus       104 -I~Vi~~~tl~i~~~~~~  120 (121)
                       |+.+|++|+++.=+++.
T Consensus       271 ~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             EEEEECTTTCCEEEEEES
T ss_pred             eEEEEcCCCCceeeEeec
Confidence             99999999999877653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.20  E-value=0.058  Score=44.05  Aligned_cols=101  Identities=12%  Similarity=0.167  Sum_probs=67.9

Q ss_pred             CCeEEEEECCcccceeeeeEecC---CCEEEEEE--e--CCEEEEEec------CCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019         14 NGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVH--V--QGRVVCALA------DGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus        14 ~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~--~--~~~v~v~La------nG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ..+|++|+..+  ++.+++++++   .....|..  +  ..++||+.+      +++|.+|..+. |.|.  ..++|.+.
T Consensus       227 ~d~V~v~D~~~--~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~--~~~vIdi~  301 (462)
T 2ece_A          227 GNRIHFWDLRK--RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWN--AEKVIEIP  301 (462)
T ss_dssp             CCEEEEEETTT--TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEE--EEEEEEEC
T ss_pred             CCEEEEEECCC--CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-Ccee--EEEEEeCC
Confidence            68999999987  5778889886   35556655  3  458999986      57999998875 6664  33344443


Q ss_pred             C-------C---------CCceeEeeee--CCEEEEEeC--CeEEEEeCC---CCcEEEEEE
Q psy16019         81 L-------P---------HHSVRSLAAV--YNKVWCGYK--NKIHVVDPK---SLDVIRPVT  119 (121)
Q Consensus        81 ~-------~---------~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~---tl~i~~~~~  119 (121)
                      .       |         ..-..-|.+.  ++.||+++.  |.|.++|..   ++++..++.
T Consensus       302 ~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~  363 (462)
T 2ece_A          302 AEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK  363 (462)
T ss_dssp             CEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             CccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence            3       0         0112233333  689999999  799999864   456665554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.07  E-value=0.034  Score=43.55  Aligned_cols=64  Identities=14%  Similarity=-0.024  Sum_probs=50.6

Q ss_pred             eCCEEEEEecCC-----cEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CCEEEEEe-----------CCe
Q psy16019         45 VQGRVVCALADG-----SVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YNKVWCGY-----------KNK  103 (121)
Q Consensus        45 ~~~~v~v~LanG-----~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~~lw~~~-----------gn~  103 (121)
                      ...++||.-..+     +|.|+        |.+..++   |.+|.  .|  -+.+.  ++++|.++           +|.
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvI--------D~~t~~v~~~i~vG~--~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVS--------CAGCGVTLGHSLGAF--LS--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEE--------ETTTTEEEEEEEECT--TC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCCeEEEECCccCCccceEEEE--------ECCCCeEEEEEeCCC--CC--ceEECCCCCEEEEEcccccccccCCCCCE
Confidence            446899988754     78888        6666655   68887  78  45555  68999998           478


Q ss_pred             EEEEeCCCCcEEEEEEe
Q psy16019        104 IHVVDPKSLDVIRPVTI  120 (121)
Q Consensus       104 I~Vi~~~tl~i~~~~~~  120 (121)
                      |.+||+.|+++.+++++
T Consensus        98 VsviD~~T~~vv~~I~v  114 (368)
T 1mda_H           98 VEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             EEEECTTTCCEEEEEEE
T ss_pred             EEEEECCCCCEEEEEEC
Confidence            99999999999999875

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.94  E-value=0.17  Score=38.76  Aligned_cols=99  Identities=13%  Similarity=0.167  Sum_probs=58.2

Q ss_pred             CCeEEEEecCCeEEEEECCc---ccceeeeeEecC-CCEEEEEEe---CCEEEEEecCC----cEEEEEcCCCCCCCCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVS---QWRRCLHSIQLK-DSVLNIVHV---QGRVVCALADG----SVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~---~~~~~l~~~~l~-~~V~~i~~~---~~~v~v~LanG----~l~Vy~r~~~g~wd~~~   73 (121)
                      +..||+||+.| +++++..+   .|+.. . ..+. ..|.+|...   ++.+|+|...|    -|.. ..+.+..|..-.
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~-~-~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~-s~D~G~tW~~~~   97 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELR-G-PVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFR-SDDGGGNWTEAT   97 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEE-E-EESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEE-ESSTTSCCEECS
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceEC-C-ccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEE-eCCCCCCceECC
Confidence            45899999977 77777543   33321 1 1233 578899886   57899999887    3433 233444675322


Q ss_pred             ceEEEeCC--------CCCceeEeeee----CCEEEEEeC-CeEEEEe
Q psy16019         74 YHTVTLGL--------PHHSVRSLAAV----YNKVWCGYK-NKIHVVD  108 (121)
Q Consensus        74 ~~~i~lg~--------~~~pV~~m~~v----~~~lw~~~g-n~I~Vi~  108 (121)
                      .. ..+..        ....|.+|+..    .+.||++.. +.|+.-+
T Consensus        98 ~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~  144 (394)
T 3b7f_A           98 RP-PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST  144 (394)
T ss_dssp             BC-CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred             cc-ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence            11 00111        01246677765    688999754 6777664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.70  E-value=0.23  Score=39.18  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=56.6

Q ss_pred             EEEecCCeEEEEECCcccceeeeeE--ecC----CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeC-
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRCLHSI--QLK----DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLG-   80 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~l~~~--~l~----~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg-   80 (121)
                      --|+.|+.|.+|+...  .+++..+  .+|    +.+++.......+..|..||+|.+|        |+...+.+ ++. 
T Consensus       254 aSGs~D~tIklWd~~t--gk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIW--------Dl~tGk~l~tL~g  323 (356)
T 2w18_A          254 SLRSPVFQLIVINPKT--TLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW--------DLLLGQCTALLPP  323 (356)
T ss_dssp             ----CCEEEEEEETTT--TEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEE--------ETTTCSEEEEECC
T ss_pred             eccCCCcEEEEEECCC--CEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEE--------ECCCCcEEEEecC
Confidence            3478899999999876  3544433  234    2355666666667777889999997        77766554 443 


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-CeEEEEeC
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDP  109 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~  109 (121)
                      ....++.+++..  ++.|..|+. ++|+|-|.
T Consensus       324 H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          324 VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            222355555555  467887877 57998763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.67  E-value=0.11  Score=42.17  Aligned_cols=72  Identities=13%  Similarity=0.073  Sum_probs=48.7

Q ss_pred             CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee--CCEEEEEeCCeEEEEeCCC---
Q psy16019         37 DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKS---  111 (121)
Q Consensus        37 ~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~t---  111 (121)
                      .+|.++.+..+.-++...||++.+|        |++..+...+.....++.++...  ++.|..+..+.|+++|..+   
T Consensus        82 ~~v~~~~~spd~~~~~~~~~~i~~~--------d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFTQGGLVGF--------DMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTTTEEEEEETTEEEEE--------ETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTS
T ss_pred             cCceeEEECCCCeEEEEECCEEEEE--------ECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccc
Confidence            3688888876554445578999998        44444444333323556665555  6788888889999999988   


Q ss_pred             --CcEEE
Q psy16019        112 --LDVIR  116 (121)
Q Consensus       112 --l~i~~  116 (121)
                        .+..+
T Consensus       154 ~~g~~~~  160 (706)
T 2z3z_A          154 GMSRAIA  160 (706)
T ss_dssp             CCCCCEE
T ss_pred             cCCCcEE
Confidence              66543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.65  E-value=0.017  Score=47.72  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE--EEE-eCCEEEEEecCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVH-VQGRVVCALADG   56 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~-~~~~v~v~LanG   56 (121)
                      +..+.|++|+.||.|+.|++.+  -+.++++++++.+..  +.| .+++.||+.++|
T Consensus       495 tagglvf~g~~dg~l~A~D~~t--G~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          495 TAGNLVFTGTGDGYFKAFDAKS--GKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             eCCCEEEEECCCCcEEEEECCC--CCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence            4578999999999999999887  588999999975543  555 688999998877

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=94.84  E-value=0.067  Score=39.27  Aligned_cols=52  Identities=17%  Similarity=0.099  Sum_probs=39.1

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAI   60 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~V   60 (121)
                      .+.+|+++.+ .|++|+...   +.+..+.+|..+.++.+.  .+.+|++.++|...+
T Consensus       249 ~G~lwv~~~~-gv~~~~~~g---~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          249 GGWLWSSSGT-GVCVFDSDG---QLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             TSCEEECCSS-EEEEECTTS---CEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCEEEecCC-cEEEECCCC---CEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            4469999965 599999854   567788888778888874  458999998765444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=94.84  E-value=0.36  Score=36.17  Aligned_cols=106  Identities=11%  Similarity=0.024  Sum_probs=60.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEEEe-CCE---EEEEe-------------cCCcEEEEEc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHV-QGR---VVCAL-------------ADGSVAIFRR   63 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~~~-~~~---v~v~L-------------anG~l~Vy~r   63 (121)
                      .....++.+.++ .|.+|+.... .+.......  +..+.++... +++   +|++-             .+|++.+|+.
T Consensus        49 pdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~  126 (365)
T 1jof_A           49 HERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSV  126 (365)
T ss_dssp             TTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEE
T ss_pred             CCCCEEEEEccc-eEEEEEECCC-CCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEcc
Confidence            345578888887 8999987521 122222222  2323233333 233   34442             5788999977


Q ss_pred             CCCCCCCCCCceEEEe---CCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC-CCcEE
Q psy16019         64 GPDGQWDLSKYHTVTL---GLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK-SLDVI  115 (121)
Q Consensus        64 ~~~g~wd~~~~~~i~l---g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~-tl~i~  115 (121)
                      ..+|..    ...+..   .. ...+.++...  ++.|+++..  ++|++++.+ +++++
T Consensus       127 ~~~g~~----~~~~~~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          127 SETGKL----EKNVQNYEYQE-NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             CTTCCE----EEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCCCcC----cceEeeEEeCC-CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence            654421    112222   11 2456777766  467888764  689999988 77664

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=94.83  E-value=0.13  Score=41.64  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=60.7

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecCC----CEEEEEEeCC--EEEEEecC---------CcEEEEEcCCCCCCCCC
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKD----SVLNIVHVQG--RVVCALAD---------GSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~----~V~~i~~~~~--~v~v~Lan---------G~l~Vy~r~~~g~wd~~   72 (121)
                      +...+.+|.|++|+....  ++...+..+.    .|.++....+  ++..+..+         +.+.+|        |++
T Consensus        30 ~~~~~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~--------d~~   99 (723)
T 1xfd_A           30 FIYREQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS--------KIP   99 (723)
T ss_dssp             BCCCCSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE--------ESS
T ss_pred             EEEEeCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE--------ECC
Confidence            334468899999998763  3334444332    3777777643  44444443         555565        444


Q ss_pred             CceEEEeCCC---CCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEEE
Q psy16019         73 KYHTVTLGLP---HHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIRP  117 (121)
Q Consensus        73 ~~~~i~lg~~---~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~~  117 (121)
                      ..+...+...   ...++++...  ++.|..+..++|+++|..+.+..+.
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A          100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEE
T ss_pred             CCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEE
Confidence            4333333321   1225665555  6788888889999999999876654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=94.78  E-value=0.16  Score=41.42  Aligned_cols=96  Identities=13%  Similarity=0.044  Sum_probs=60.8

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCC----CEEEEEEeC--CEEEEEec---------CCcEEEEEcCCCCCCCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD----SVLNIVHVQ--GRVVCALA---------DGSVAIFRRGPDGQWDL   71 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~----~V~~i~~~~--~~v~v~La---------nG~l~Vy~r~~~g~wd~   71 (121)
                      .++..+.+|.|++|+....  ++...+..+.    .|.++.+..  .++..+..         +|+|.+++        +
T Consensus        28 ~~~~~~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d--------~   97 (719)
T 1z68_A           28 EYLHQSADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD--------L   97 (719)
T ss_dssp             EEEEECTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE--------T
T ss_pred             eEEEEcCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE--------C
Confidence            5666678999999998773  3333333322    377777763  34544444         57777774        4


Q ss_pred             CCceE---EEeCCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEE
Q psy16019         72 SKYHT---VTLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVI  115 (121)
Q Consensus        72 ~~~~~---i~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~  115 (121)
                      +..+.   ..+.   .++.++...  ++.|..+..++|++.|..+++..
T Consensus        98 ~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~  143 (719)
T 1z68_A           98 SNGEFVRGNELP---RPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF  143 (719)
T ss_dssp             TTTEECCSSCCC---SSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred             CCCccccceecC---cccccceECCCCCEEEEEECCeEEEEeCCCCCcE
Confidence            43333   2232   345555544  67898888899999999887754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=94.68  E-value=0.92  Score=33.48  Aligned_cols=104  Identities=10%  Similarity=0.088  Sum_probs=63.2

Q ss_pred             CCeEEEEe--cCCeEEEEECCcccceeeeeEecC-----------CCEEEEEEeC--CEEEEEe-cCCcEEEEEcCCCCC
Q psy16019          5 LPTMWLGS--QNGSVFVHSAVSQWRRCLHSIQLK-----------DSVLNIVHVQ--GRVVCAL-ADGSVAIFRRGPDGQ   68 (121)
Q Consensus         5 ~~tvwiGt--~~g~I~v~~~~~~~~~~l~~~~l~-----------~~V~~i~~~~--~~v~v~L-anG~l~Vy~r~~~g~   68 (121)
                      .+.+|+..  .+++|.+|+...   +.+..+..+           ..+..|....  +++||+- .++.|.+|+... | 
T Consensus       154 ~g~lyv~d~~~~~~I~~~~~~g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G-  228 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFSPSG---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-K-  228 (329)
T ss_dssp             TCCEEEEECSSCCEEEEECTTS---CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-C-
T ss_pred             CCeEEEEeCCCCCeEEEEcCCC---CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-C-
Confidence            56677766  488999998544   333333211           1367778763  6899886 467899996542 1 


Q ss_pred             CCCCCceEEEeCC--CCCceeEeeeeCCEEEEEeC---------CeEEEEeCCCCcEEEEE
Q psy16019         69 WDLSKYHTVTLGL--PHHSVRSLAAVYNKVWCGYK---------NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        69 wd~~~~~~i~lg~--~~~pV~~m~~v~~~lw~~~g---------n~I~Vi~~~tl~i~~~~  118 (121)
                           ..+-.+..  ....+..+....+.++...|         ++|+++|..++++...|
T Consensus       229 -----~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          229 -----EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             -----CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             -----cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence                 11112321  12345555555444444443         38999999999988876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.57  E-value=0.36  Score=39.15  Aligned_cols=57  Identities=14%  Similarity=0.166  Sum_probs=35.5

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC-CEEEEEecCCcEEEEEcCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ-GRVVCALADGSVAIFRRGP   65 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~   65 (121)
                      ..+..+ .++.|++|+...  .+.......+..+.++.+.. ++-++...|++|.+++...
T Consensus        93 ~~~~~~-~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~  150 (706)
T 2z3z_A           93 GLVVLF-TQGGLVGFDMLA--RKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGK  150 (706)
T ss_dssp             TEEEEE-ETTEEEEEETTT--TEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBC
T ss_pred             CeEEEE-ECCEEEEEECCC--CceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCc
Confidence            444444 459999999876  33333333456677777763 3333345889999986543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.57  E-value=1.3  Score=34.82  Aligned_cols=111  Identities=12%  Similarity=0.146  Sum_probs=80.1

Q ss_pred             eEEEEecCCeEEEEECCcc-----cceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          7 TMWLGSQNGSVFVHSAVSQ-----WRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~-----~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .+++..++|.+..|.+.+.     ..+.+.+|+++..+--+...+  +++|+|-.|--|..|.-..++  + ...+.+ .
T Consensus       145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~--~-~~~~~v~~  221 (355)
T 3amr_A          145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDG--G-SNGTVIDR  221 (355)
T ss_dssp             EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTS--C-SCCEEEEE
T ss_pred             EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCC--C-CCceEEEE
Confidence            5888888999998887542     235678999999888888864  799999999778777644333  1 233444 4


Q ss_pred             eCCC--CCceeEeeee-C----CEEEEEeC--CeEEEEeCC-CCcEEEEEEe
Q psy16019         79 LGLP--HHSVRSLAAV-Y----NKVWCGYK--NKIHVVDPK-SLDVIRPVTI  120 (121)
Q Consensus        79 lg~~--~~pV~~m~~v-~----~~lw~~~g--n~I~Vi~~~-tl~i~~~~~~  120 (121)
                      ++..  ..-+.-|++. .    +-|.++|+  |...|+|.+ +++...+|.+
T Consensus       222 ~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I  273 (355)
T 3amr_A          222 ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI  273 (355)
T ss_dssp             BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred             ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence            4322  2356777775 2    36999995  699999997 8999999975

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=94.30  E-value=0.76  Score=37.33  Aligned_cols=60  Identities=5%  Similarity=0.067  Sum_probs=37.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeC-CEEEEEecCCcEEEEEc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ-GRVVCALADGSVAIFRR   63 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~-~~v~v~LanG~l~Vy~r   63 (121)
                      .....+..+++ +.|++|+.....+.....+ ..+..+.++.+.. ++.++..++++|.+++.
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~  179 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDL  179 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEET
T ss_pred             CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEec
Confidence            44556777776 9999999877300023333 3446788888874 34444445778888743

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.12  E-value=1.3  Score=39.71  Aligned_cols=77  Identities=27%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             CCeEEEEec-CCeEEEEECCcccceeeeeEecCC--CEEEEEE--eC--CEEEEEecCCcEEEEEcCC-CCCCCCCCceE
Q psy16019          5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVH--VQ--GRVVCALADGSVAIFRRGP-DGQWDLSKYHT   76 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~~--~V~~i~~--~~--~~v~v~LanG~l~Vy~r~~-~g~wd~~~~~~   76 (121)
                      .+.+.+|+. |+.+.||++.+  -+.+....|++  .+.+|..  .+  .++++||.||.+.-|.-+. .|  .+.+.+.
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~--l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg--~l~d~r~  646 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPS--FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETG--LLSDRKK  646 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTT--CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTC--CEEEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCC--CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCC--cccccee
Confidence            357889995 99999999976  34444445643  4444433  23  3799999999999997543 23  3455566


Q ss_pred             EEeCCCCCcee
Q psy16019         77 VTLGLPHHSVR   87 (121)
Q Consensus        77 i~lg~~~~pV~   87 (121)
                      ..+|.  .|++
T Consensus       647 ~~LG~--~pv~  655 (1158)
T 3ei3_A          647 VTLGT--QPTV  655 (1158)
T ss_dssp             EECCS--SCCE
T ss_pred             EEcCC--CceE
Confidence            78887  6765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.00  E-value=1.2  Score=34.48  Aligned_cols=102  Identities=9%  Similarity=0.114  Sum_probs=61.4

Q ss_pred             CCCeEEEEecCC--eEEEEECCcccce-eeeeE-e-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019          4 VLPTMWLGSQNG--SVFVHSAVSQWRR-CLHSI-Q-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         4 ~~~tvwiGt~~g--~I~v~~~~~~~~~-~l~~~-~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      ....+|.+..++  .|++++..+.... .+..+ . ....+.++...  ++.+|++..+|.|..|.....      ...+
T Consensus       181 ~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~------~~~~  254 (409)
T 3hrp_A          181 DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ------EVTL  254 (409)
T ss_dssp             TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC------CEEE
T ss_pred             CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC------CEEE
Confidence            345678887766  8999997764331 12111 1 12345566665  479999988898888854321      1122


Q ss_pred             E----EeCCC-CCceeEeeee--CCEEEEEeC--CeEEEEeCCC
Q psy16019         77 V----TLGLP-HHSVRSLAAV--YNKVWCGYK--NKIHVVDPKS  111 (121)
Q Consensus        77 i----~lg~~-~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~t  111 (121)
                      +    ..+.. ..|...|++.  ++.||++..  ++|+.++...
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            2    11211 1243367766  589999876  6899998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=93.46  E-value=1.4  Score=37.85  Aligned_cols=98  Identities=12%  Similarity=0.140  Sum_probs=62.8

Q ss_pred             CeEEEEecCCeEE-EEECCcccceeeeeE-ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC-
Q psy16019          6 PTMWLGSQNGSVF-VHSAVSQWRRCLHSI-QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG-   80 (121)
Q Consensus         6 ~tvwiGt~~g~I~-v~~~~~~~~~~l~~~-~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg-   80 (121)
                      ..+..+++++.|+ +|+....  + ...+ .....+.++.+..  .+++.+..++.|.+|        |++..+...+- 
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~--~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~--------d~~tg~~~~~~~  417 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTG--K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV--------DLETGKPTVIER  417 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTC--C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE--------ETTTCCEEEEEE
T ss_pred             CeEEEEECCCceEEEEECCCC--C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEE--------ECCCCceEEecc
Confidence            3566677788899 9997762  2 2222 3336788888864  467778888889887        44443333221 


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-----------CeEEEEeCCCCcE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-----------NKIHVVDPKSLDV  114 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-----------n~I~Vi~~~tl~i  114 (121)
                      ....++.++...  ++.|..+..           +.|+++|..+.++
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            123677777766  455654433           3899999998874

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.44  E-value=0.51  Score=36.02  Aligned_cols=103  Identities=13%  Similarity=0.136  Sum_probs=59.8

Q ss_pred             CCeEEEEecCCeEEEEEC-CcccceeeeeEecC----------------CCEEEEEEe---CCEEEEEecCCcEEEEEcC
Q psy16019          5 LPTMWLGSQNGSVFVHSA-VSQWRRCLHSIQLK----------------DSVLNIVHV---QGRVVCALADGSVAIFRRG   64 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~-~~~~~~~l~~~~l~----------------~~V~~i~~~---~~~v~v~LanG~l~Vy~r~   64 (121)
                      .+.+|+|++.|.|+...- ...|++.......|                ..+.+|...   ++.+|+|..+|-|... .+
T Consensus       128 ~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s-~D  206 (394)
T 3b7f_A          128 PGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFES-TD  206 (394)
T ss_dssp             TTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEE-SS
T ss_pred             CCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEE-CC
Confidence            678999999998887642 23344321100111                357788875   4689999888764443 23


Q ss_pred             CCCCCCCCCceEEEeCCC------CCceeEeeeeC---CEEEEEeCCeEEEEe
Q psy16019         65 PDGQWDLSKYHTVTLGLP------HHSVRSLAAVY---NKVWCGYKNKIHVVD  108 (121)
Q Consensus        65 ~~g~wd~~~~~~i~lg~~------~~pV~~m~~v~---~~lw~~~gn~I~Vi~  108 (121)
                      .+..|..-....-.-..|      ...+++|....   +.||++..+.|+..+
T Consensus       207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~  259 (394)
T 3b7f_A          207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMD  259 (394)
T ss_dssp             TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEE
T ss_pred             CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeC
Confidence            334574221100000001      13478887763   899999998888765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.33  E-value=0.77  Score=41.06  Aligned_cols=90  Identities=16%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             CeEEEEECCcccceeeeeEecC--CCEEEEEEe------CCEEEEEe----------cCCcEEEEEcCCCCCCCCCCceE
Q psy16019         15 GSVFVHSAVSQWRRCLHSIQLK--DSVLNIVHV------QGRVVCAL----------ADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus        15 g~I~v~~~~~~~~~~l~~~~l~--~~V~~i~~~------~~~v~v~L----------anG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      ++|.+++..+  -+.+.++.+.  ..++|++..      +.++.||.          ..|.|.||+-. +     ...+.
T Consensus       807 s~i~lidp~t--~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~-~-----~kL~l  878 (1158)
T 3ei3_A          807 HNLLIIDQHT--FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS-D-----GKLQT  878 (1158)
T ss_dssp             EEEEEEETTT--CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE-T-----TEEEE
T ss_pred             EEEEEEeCCC--CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE-C-----CEEEE
Confidence            5678888665  3567888887  488888864      35788888          35889999654 1     12222


Q ss_pred             EEeCCCCCceeEeeeeCCEEEEEeCCeEEEEeCCCC
Q psy16019         77 VTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL  112 (121)
Q Consensus        77 i~lg~~~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl  112 (121)
                      +.--....||++|...+++|-+|.|++|++++...-
T Consensus       879 v~~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~  914 (1158)
T 3ei3_A          879 VAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTE  914 (1158)
T ss_dssp             EEEEEESSCEEEEEEETTEEEEEETTEEEEEEECTT
T ss_pred             EEEEEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCC
Confidence            211112479999999999999999999999988643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=92.87  E-value=1  Score=37.22  Aligned_cols=48  Identities=21%  Similarity=0.134  Sum_probs=33.7

Q ss_pred             CCCCCceEEEeCCCCCceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         69 WDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        69 wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                      ||++.-+..++...+..+......  ++.|..+..+.|++.|..+.+..+
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred             EECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE
Confidence            466666665554433566666555  688988888999999998877543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=91.78  E-value=3.1  Score=30.93  Aligned_cols=113  Identities=8%  Similarity=0.059  Sum_probs=66.6

Q ss_pred             CCCCeEEEEe-cCCeEEEEECC-cccceeeeeEecC---CCEEEEEEeC--CEEEEEec-CCcEEEEEcCC-CCCCCCCC
Q psy16019          3 SVLPTMWLGS-QNGSVFVHSAV-SQWRRCLHSIQLK---DSVLNIVHVQ--GRVVCALA-DGSVAIFRRGP-DGQWDLSK   73 (121)
Q Consensus         3 ~~~~tvwiGt-~~g~I~v~~~~-~~~~~~l~~~~l~---~~V~~i~~~~--~~v~v~La-nG~l~Vy~r~~-~g~wd~~~   73 (121)
                      .....++++. .++.|++|+.. +...+.+..+++|   ..+..+.+..  .++|++.. ++++.+|+.+. .|.... .
T Consensus       154 pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~  232 (365)
T 1jof_A          154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-T  232 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-E
T ss_pred             CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-c
Confidence            4455677765 46899999986 3211233455543   4677888764  37888875 68999997643 231100 0


Q ss_pred             ceEEEeCCC---C-C-------ceeEee-ee--CCEEEEEeC--C-----eEEEEeCC-CCcEEE
Q psy16019         74 YHTVTLGLP---H-H-------SVRSLA-AV--YNKVWCGYK--N-----KIHVVDPK-SLDVIR  116 (121)
Q Consensus        74 ~~~i~lg~~---~-~-------pV~~m~-~v--~~~lw~~~g--n-----~I~Vi~~~-tl~i~~  116 (121)
                      ...+..-..   . .       .+..+. ..  ++.||+++.  +     .|.+++.. ++++.+
T Consensus       233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~  297 (365)
T 1jof_A          233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred             cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence            112222110   0 1       366677 55  578998875  4     79999875 677654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=91.52  E-value=0.8  Score=37.22  Aligned_cols=60  Identities=7%  Similarity=0.119  Sum_probs=37.7

Q ss_pred             CCCCCeEEEEec---------CCeEEEEECCcccceeeeeEecCCCEEEEEEeCC-EEEEEecCCcEEEEEc
Q psy16019          2 TSVLPTMWLGSQ---------NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG-RVVCALADGSVAIFRR   63 (121)
Q Consensus         2 ~~~~~tvwiGt~---------~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~-~v~v~LanG~l~Vy~r   63 (121)
                      +.....+..+++         ++.|+++++..  .+.+...+++..+.++.+..+ +-++...|++|.+++.
T Consensus        68 SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           68 SPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred             CCCCCeEEEEecCceeEEeecceEEEEEECCC--CccccceecCcccccceECCCCCEEEEEECCeEEEEeC
Confidence            345566777766         78999999877  333222345566777777642 3333336888888743

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=91.00  E-value=3.7  Score=30.42  Aligned_cols=74  Identities=18%  Similarity=0.150  Sum_probs=50.2

Q ss_pred             CCEEEEEEe-CCEEEEEec---CC--cEEEEEcCCCCCCCCCCceEEEeCC-------CCCceeEeeeeC-CEEEEEe--
Q psy16019         37 DSVLNIVHV-QGRVVCALA---DG--SVAIFRRGPDGQWDLSKYHTVTLGL-------PHHSVRSLAAVY-NKVWCGY--  100 (121)
Q Consensus        37 ~~V~~i~~~-~~~v~v~La---nG--~l~Vy~r~~~g~wd~~~~~~i~lg~-------~~~pV~~m~~v~-~~lw~~~--  100 (121)
                      ..+..|... ++++||+..   +|  +|..+.   +|       ++..+.+       .-..+..|.+.. ++||+..  
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~---~g-------~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g   86 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT---QD-------GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNG   86 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE---TT-------EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC---CC-------CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCC
Confidence            567777876 679999964   35  677774   22       2222211       124566777764 8899865  


Q ss_pred             -----CCeEEEEeCCCCcEEEEEEe
Q psy16019        101 -----KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus       101 -----gn~I~Vi~~~tl~i~~~~~~  120 (121)
                           +++|+++|+.|.++.+.++.
T Consensus        87 ~~~~~~~~i~~~d~~tg~~~~~~~~  111 (343)
T 2qe8_A           87 NQSKSVPKLVAWDTLNNQLSRVIYL  111 (343)
T ss_dssp             HHHTSCCEEEEEETTTTEEEEEEEC
T ss_pred             CCcCCCCeEEEEECCCCeEEEEEEC
Confidence                 47999999999998887753

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=90.70  E-value=5.3  Score=34.34  Aligned_cols=90  Identities=2%  Similarity=-0.076  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEeCC--EEEEEecC----------CcEEEEEcCCCCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQG--RVVCALAD----------GSVAIFRRGPDGQ   68 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~~--~v~v~Lan----------G~l~Vy~r~~~g~   68 (121)
                      +.....+..+.+++.|++|++..  .+....+ ..+..|.++.+..+  ++..+..+          +.|.+|       
T Consensus       387 SpDG~~la~~~~~~~v~~~d~~t--g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~-------  457 (1045)
T 1k32_A          387 DRNGKFAVVANDRFEIMTVDLET--GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY-------  457 (1045)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTT--CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE-------
T ss_pred             CCCCCEEEEECCCCeEEEEECCC--CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE-------
Confidence            34566788999999999999876  3433333 34467777777643  34444433          367776       


Q ss_pred             CCCCCceEEEeCCCCCceeEeeee--CCEEEEEeC
Q psy16019         69 WDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK  101 (121)
Q Consensus        69 wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g  101 (121)
                       |++..+...+......+.++...  ++.|+.++.
T Consensus       458 -d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          458 -DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             -ETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             -ECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence             55555555555444556666555  466766654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=90.61  E-value=4.5  Score=32.89  Aligned_cols=109  Identities=11%  Similarity=0.195  Sum_probs=60.8

Q ss_pred             CCCeEEEEe-cCCeEEEEECCcccc--eeeeeEe---c----C-CCEEEEEEeCCEEEE-EecC------CcEEEEEcCC
Q psy16019          4 VLPTMWLGS-QNGSVFVHSAVSQWR--RCLHSIQ---L----K-DSVLNIVHVQGRVVC-ALAD------GSVAIFRRGP   65 (121)
Q Consensus         4 ~~~tvwiGt-~~g~I~v~~~~~~~~--~~l~~~~---l----~-~~V~~i~~~~~~v~v-~Lan------G~l~Vy~r~~   65 (121)
                      ....+|+.. .+++|||++....-+  +..+++.   +    . ....-+....+.+|| +++|      |.|.++    
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vl----  169 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILML----  169 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEE----
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEE----
Confidence            356788855 688999999864323  2344441   1    1 122223333333555 3444      678888    


Q ss_pred             CCCCCCCCceEE---EeCCCCCceeE-e--eeeCCEEEEEe--------------------CCeEEEEeCCCCcEEEEEE
Q psy16019         66 DGQWDLSKYHTV---TLGLPHHSVRS-L--AAVYNKVWCGY--------------------KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        66 ~g~wd~~~~~~i---~lg~~~~pV~~-m--~~v~~~lw~~~--------------------gn~I~Vi~~~tl~i~~~~~  119 (121)
                          |.+..+++   ..+..+..+.- +  .+-.+.++.+.                    +++|.++|..+.++.+++.
T Consensus       170 ----D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          170 ----DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             ----CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             ----ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence                44444443   22221111110 1  22245566554                    7999999999999888887


Q ss_pred             e
Q psy16019        120 I  120 (121)
Q Consensus       120 ~  120 (121)
                      +
T Consensus       246 v  246 (462)
T 2ece_A          246 L  246 (462)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.54  E-value=0.5  Score=36.77  Aligned_cols=68  Identities=10%  Similarity=0.133  Sum_probs=45.2

Q ss_pred             CCEEEEEecCCcEEEEEcCCCC-CCCCCCc---eEEEeCCCCCceeEeeeeCCEEEEE--eC-CeEEEEeCCCCcEEEEE
Q psy16019         46 QGRVVCALADGSVAIFRRGPDG-QWDLSKY---HTVTLGLPHHSVRSLAAVYNKVWCG--YK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        46 ~~~v~v~LanG~l~Vy~r~~~g-~wd~~~~---~~i~lg~~~~pV~~m~~v~~~lw~~--~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      ++.|||+..||.|..+.+..+. .|.++..   ..+....+..+      .++.+|++  .+ .+++.++++++..+-.+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            4689999999999999886543 4876543   12222221111      35678876  34 68999999998666554


Q ss_pred             E
Q psy16019        119 T  119 (121)
Q Consensus       119 ~  119 (121)
                      .
T Consensus        84 ~   84 (339)
T 2be1_A           84 S   84 (339)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=90.52  E-value=0.44  Score=40.00  Aligned_cols=86  Identities=19%  Similarity=0.226  Sum_probs=56.9

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc--e----------
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY--H----------   75 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~--~----------   75 (121)
                      .|-|.++|.+.||.+.+  .+.++.+.                         ||.+.....|.+.+-  +          
T Consensus        18 f~s~g~~g~~~v~g~ps--~r~~~~i~-------------------------vf~~~~~~g~g~~~es~~~l~~~~~~~~   70 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPS--MRELMRVP-------------------------VFNRCSATGWGQTNESVRIHERTMSERT   70 (595)
T ss_dssp             EECCBTTCEEEEEEETT--CCEEEEEE-------------------------SSSCCTTTCTTTBHHHHHHHHTTCCHHH
T ss_pred             EeeCCcCceEEEEecCC--cceEEEee-------------------------eecCCCCcccCCchhHHHHHhccCCccc
Confidence            57888999999999888  45566543                         344444333433221  1          


Q ss_pred             ----------EEEeCCCCCceeEe---eeeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         76 ----------TVTLGLPHHSVRSL---AAVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        76 ----------~i~lg~~~~pV~~m---~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                                .+..|+.++|..+.   ..-++.||+...  ++|.+||+.++++.+.+++
T Consensus        71 ~~~~~~~g~~~~~~gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i  130 (595)
T 1fwx_A           71 KKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI  130 (595)
T ss_dssp             HHHHHHTTCSSCCCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             hhhhhccCceecccCCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC
Confidence                      24456655554444   235789999887  5799999999998886554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=90.36  E-value=5.1  Score=30.93  Aligned_cols=104  Identities=9%  Similarity=-0.055  Sum_probs=60.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC----CCEE-EEEEe--CCEEEEEec-CCcEEEEEcCCCCCCCCCCceE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK----DSVL-NIVHV--QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~----~~V~-~i~~~--~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      .+.+|+...++.|+.|+...............    .... .|.+.  ++++|++-. ++.|..|..+  |      ...
T Consensus       230 ~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--g------~~~  301 (409)
T 3hrp_A          230 EEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--G------ECE  301 (409)
T ss_dssp             SSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--C------CEE
T ss_pred             CCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--C------CEE
Confidence            56889977888999999776321111111111    1123 77776  478999865 5677777322  2      111


Q ss_pred             EEeCCC--------------CCceeEeeee-CCEEEEEeC---CeEEEEeCCCCcEEE
Q psy16019         77 VTLGLP--------------HHSVRSLAAV-YNKVWCGYK---NKIHVVDPKSLDVIR  116 (121)
Q Consensus        77 i~lg~~--------------~~pV~~m~~v-~~~lw~~~g---n~I~Vi~~~tl~i~~  116 (121)
                      ...|..              -.--+.|++. ++.||++..   ++|+.++..++++..
T Consensus       302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~  359 (409)
T 3hrp_A          302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST  359 (409)
T ss_dssp             EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence            222221              0113556666 366999865   689999977877654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=89.24  E-value=5.4  Score=29.63  Aligned_cols=98  Identities=9%  Similarity=0.068  Sum_probs=55.8

Q ss_pred             CCCeEEEEecCCeEEEEECC--cccceeeeeEe-cC--CCEEEEEEe-CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          4 VLPTMWLGSQNGSVFVHSAV--SQWRRCLHSIQ-LK--DSVLNIVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~--~~~~~~l~~~~-l~--~~V~~i~~~-~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      ..+.+|+++++|.+++.+..  ..|.+ +. .. ++  ..+.+|.+. ++.+|++..+|.|. .+++.+..|..     +
T Consensus       214 ~~g~~~~~~~~G~~~~s~~D~G~tW~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW~~-----~  285 (327)
T 2xbg_A          214 PDGRLWMIVNGGKIAFSDPDNSENWGE-LL-SPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTWQQ-----D  285 (327)
T ss_dssp             TTSCEEEEETTTEEEEEETTEEEEECC-CB-CTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSCEE-----C
T ss_pred             CCCCEEEEeCCceEEEecCCCCCeeEe-cc-CCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCcccEE-----c
Confidence            34689999999987765422  12222 11 11 22  358888876 56889988899873 33444456752     2


Q ss_pred             EeCCC-CCceeEeeee-CCEEEEEeC-CeEEEEeC
Q psy16019         78 TLGLP-HHSVRSLAAV-YNKVWCGYK-NKIHVVDP  109 (121)
Q Consensus        78 ~lg~~-~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~  109 (121)
                      ..+.+ +..+.++... ++.+|++.. ..|+-.+.
T Consensus       286 ~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          286 VDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             GGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             CccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            21111 2345666654 566666544 46766654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=89.08  E-value=7.1  Score=30.78  Aligned_cols=97  Identities=13%  Similarity=-0.007  Sum_probs=53.6

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecC----CcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALAD----GSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~Lan----G~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      .+++...++.+.+|+....  +...-...+.  .++.+.  +..++.+..+    ++|.++        |++.-+...+.
T Consensus       124 ~~~~s~~~~~~~l~d~~~g--~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~--------d~~~g~~~~l~  191 (582)
T 3o4h_A          124 VVFTGATEDRVALYALDGG--GLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTS--------NLSSGGLRVFD  191 (582)
T ss_dssp             EEEEEECSSCEEEEEEETT--EEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEE--------ETTTCCCEEEC
T ss_pred             EEEEecCCCCceEEEccCC--cEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEE--------cCCCCCceEee
Confidence            4555555666668876552  2222223343  344443  4444444444    444444        44333333443


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-C--eEEEEeCCCCcEE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-N--KIHVVDPKSLDVI  115 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-n--~I~Vi~~~tl~i~  115 (121)
                      .....++.....  ++.|+.+.. +  +|+++|.++.+..
T Consensus       192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            333567777666  577886555 3  7999999998876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=88.79  E-value=7.8  Score=30.89  Aligned_cols=102  Identities=7%  Similarity=-0.038  Sum_probs=55.6

Q ss_pred             CeEEEEecCC--eEEEEECCcccceeeeeEecCCC---------EEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCC
Q psy16019          6 PTMWLGSQNG--SVFVHSAVSQWRRCLHSIQLKDS---------VLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         6 ~tvwiGt~~g--~I~v~~~~~~~~~~l~~~~l~~~---------V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~   72 (121)
                      ..++.+..+|  .|++++..+.  +.......+..         +.++...  +..+|.+.. |...+|..+.      +
T Consensus       254 ~l~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~------~  324 (662)
T 3azo_A          254 SLIVATDRTGWWNLHRVDPATG--AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP------E  324 (662)
T ss_dssp             CEEEEECTTSSCEEEEECTTTC--CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET------T
T ss_pred             eEEEEECCCCCeEEEEEECCCC--ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC------C
Confidence            3556666667  6777775431  21111111111         3345554  334555555 7777775432      2


Q ss_pred             CceEEEeCCCCCceeEe-eeeCCEEEEEeC--C---eEEEEeCCCCcEEE
Q psy16019         73 KYHTVTLGLPHHSVRSL-AAVYNKVWCGYK--N---KIHVVDPKSLDVIR  116 (121)
Q Consensus        73 ~~~~i~lg~~~~pV~~m-~~v~~~lw~~~g--n---~I~Vi~~~tl~i~~  116 (121)
                      ..+.-.+..+...+..+ ...++.+++.++  +   .|+.+|..+.+..+
T Consensus       325 ~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          325 SGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART  374 (662)
T ss_dssp             TTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             CCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence            22233343334677777 777887766544  2   79999998887654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=87.08  E-value=7  Score=28.38  Aligned_cols=82  Identities=12%  Similarity=0.113  Sum_probs=51.6

Q ss_pred             eeeeeEecCCCEEEEEEe-CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee-CCEEEEEeC--C
Q psy16019         28 RCLHSIQLKDSVLNIVHV-QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNKVWCGYK--N  102 (121)
Q Consensus        28 ~~l~~~~l~~~V~~i~~~-~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v-~~~lw~~~g--n  102 (121)
                      +.+.++..+.....+... ++++|++- .+|.|..|...  +.    ....+..+   .....|++. +++||++..  +
T Consensus        23 ~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~--g~----~~~~~~~~---~~p~gia~~~dG~l~vad~~~~   93 (306)
T 2p4o_A           23 KIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPD--GN----QQIHATVE---GKVSGLAFTSNGDLVATGWNAD   93 (306)
T ss_dssp             EEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CC----EEEEEECS---SEEEEEEECTTSCEEEEEECTT
T ss_pred             eEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCC--Cc----eEEEEeCC---CCceeEEEcCCCcEEEEeccCC
Confidence            455666555666777774 55788886 77888887432  21    11123333   345567665 467999873  3


Q ss_pred             --eEEEEeCCCCcEEEEE
Q psy16019        103 --KIHVVDPKSLDVIRPV  118 (121)
Q Consensus       103 --~I~Vi~~~tl~i~~~~  118 (121)
                        +|+.+|..+.+++...
T Consensus        94 ~~~v~~~d~~~g~~~~~~  111 (306)
T 2p4o_A           94 SIPVVSLVKSDGTVETLL  111 (306)
T ss_dssp             SCEEEEEECTTSCEEEEE
T ss_pred             cceEEEEcCCCCeEEEEE
Confidence              4999998898876543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.99  E-value=2.8  Score=35.11  Aligned_cols=107  Identities=15%  Similarity=0.095  Sum_probs=58.5

Q ss_pred             CCeEEEEe-c-CCeEEEEECCcccceeee--eEecCCCEEEEEEeCCEEEEEecC-CcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          5 LPTMWLGS-Q-NGSVFVHSAVSQWRRCLH--SIQLKDSVLNIVHVQGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         5 ~~tvwiGt-~-~g~I~v~~~~~~~~~~l~--~~~l~~~V~~i~~~~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .+.||... . .+.|++++.....++.+.  .+..|..+ .+-+..+++|++-+. +.|.+|...  |    ...+++ .
T Consensus       507 ~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl-avd~~~~~LY~aD~~~~~I~~~d~d--G----~~~~~~~~  579 (699)
T 1n7d_A          507 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI-TLDLLSGRLYWVDSKLHSISSIDVN--G----GNRKTILE  579 (699)
T ss_dssp             SSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE-EECTTTCCEEEEETTTTEEEEECSS--S----SCCEEECC
T ss_pred             CCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE-EEeccCCEEEEEecCCCeEEEEccC--C----CceEEEEe
Confidence            34555443 2 267887776553333221  23334332 222346789988754 568887432  2    122222 1


Q ss_pred             eC-CCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         79 LG-LPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg-~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      .. .-..|. .|++.++.||.+..  ++|.++|..+++..+.+.
T Consensus       580 ~~~~~~~P~-glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          580 DEKRLAHPF-SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             CSSSCSSCC-CCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             cCCcCCCce-EeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            11 112443 56667777765554  689999999988776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=85.82  E-value=5.1  Score=31.44  Aligned_cols=62  Identities=11%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCccc---ceeeeeEecC---CCEEEEEE--eC---CEEEEEe-cCCcEEEEEcC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQW---RRCLHSIQLK---DSVLNIVH--VQ---GRVVCAL-ADGSVAIFRRG   64 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~---~~~l~~~~l~---~~V~~i~~--~~---~~v~v~L-anG~l~Vy~r~   64 (121)
                      ....+||+|.|+-.|+.|++....   .+.+..+..+   +-+--|..  ..   +++||+. .|.+++||+|.
T Consensus       189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            356799999999999999976321   2344444333   44555543  32   4799999 67899999885

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.82  E-value=7.8  Score=27.73  Aligned_cols=92  Identities=12%  Similarity=0.054  Sum_probs=49.0

Q ss_pred             CeEEEEECCcc-cceeeeeEecCCCEEEEEEeCCEEEEEecC------CcEEEEEcCCCCCCCCCCceEEEeCCCCCc--
Q psy16019         15 GSVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHVQGRVVCALAD------GSVAIFRRGPDGQWDLSKYHTVTLGLPHHS--   85 (121)
Q Consensus        15 g~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~~~~v~v~Lan------G~l~Vy~r~~~g~wd~~~~~~i~lg~~~~p--   85 (121)
                      ..+++|+.... |+ .+..+..|-.-.+....++++|+-.+.      ..+.+|+.        +..+-..+...+.|  
T Consensus       175 ~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~--------~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          175 NSVEKYDPHTGHWT-NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI--------RTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             CCEEEEETTTTEEE-EECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET--------TTTEEEEECCCSSCCB
T ss_pred             ceEEEEeCCCCcEE-eCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeC--------CCCcEEECCCCCCccc
Confidence            35667775542 22 222222222222344557777776542      35777743        33322334332222  


Q ss_pred             eeEeeeeCCEEEEEeC-------CeEEEEeCCCCcEE
Q psy16019         86 VRSLAAVYNKVWCGYK-------NKIHVVDPKSLDVI  115 (121)
Q Consensus        86 V~~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~  115 (121)
                      -.++...+++|++--|       +.|.++|+++.+-+
T Consensus       246 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          246 YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             SCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             ceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            2245566889988655       57899999886654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=85.74  E-value=10  Score=29.12  Aligned_cols=98  Identities=14%  Similarity=0.031  Sum_probs=55.1

Q ss_pred             CCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEec-CCcEEEEEcCCCCCCCCCCceEEEeC-C-CCCceeE
Q psy16019         14 NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTLG-L-PHHSVRS   88 (121)
Q Consensus        14 ~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~i~lg-~-~~~pV~~   88 (121)
                      .+.|+.++.....++.+..-.+ .....|...  .+++|++-+ ++.|.+|..+  |    ...+++.-+ . -..|. .
T Consensus       224 ~~~I~~~~~dG~~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G----~~~~~~~~~~~~l~~P~-g  295 (400)
T 3p5b_L          224 PAKIKKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--G----GNRKTILEDEKRLAHPF-S  295 (400)
T ss_dssp             SCCEEEEETTSCSCEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETT--S----CCCEEEEECSSTTSSEE-E
T ss_pred             CCEEEEEeCCCCccEEEEECCC-CceEEEEEEeCCCEEEEEECCCCEEEEEeCC--C----CccEEEEeCCCCCCCCE-E
Confidence            3567777765532222211011 123344544  789999965 4667777532  2    233333222 1 13565 6


Q ss_pred             eeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         89 LAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        89 m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      |++-++.||.+..  ++|..+|..+++..+.+.
T Consensus       296 l~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          296 LAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EEEeCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            7777887755544  689999988887666553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=85.71  E-value=9.3  Score=28.52  Aligned_cols=105  Identities=11%  Similarity=0.039  Sum_probs=60.3

Q ss_pred             CCeEEEEe--cCCeEEEEECCcccceeee--eEecCCCEEEEEEe--CCEEEEEecC-CcEEEEEcCCCCCCCCCCceEE
Q psy16019          5 LPTMWLGS--QNGSVFVHSAVSQWRRCLH--SIQLKDSVLNIVHV--QGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         5 ~~tvwiGt--~~g~I~v~~~~~~~~~~l~--~~~l~~~V~~i~~~--~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .+.||...  +.+.|+.++.....++.+.  .+..|   ..|...  ++++|++-+. +.|..|..+  |    ...+++
T Consensus       133 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~P---nglavd~~~~~lY~aD~~~~~I~~~d~d--G----~~~~~~  203 (318)
T 3sov_A          133 SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWP---NGLTLDYEEQKLYWADAKLNFIHKSNLD--G----TNRQAV  203 (318)
T ss_dssp             GTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEETTTTEEEEEETT--S----CSCEEE
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCc---cEEEEeccCCEEEEEECCCCEEEEEcCC--C----CceEEE
Confidence            34555554  3578888887653333221  12223   344544  6899998764 667777432  2    233333


Q ss_pred             EeCCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         78 TLGLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      --+.-..|- .|++-++.+|.+..  ++|..+|..+++..+.+.
T Consensus       204 ~~~~~~~P~-glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          204 VKGSLPHPF-ALTLFEDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             ECSCCSCEE-EEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ecCCCCCce-EEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            222223453 56667777755554  689999998887666554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=85.44  E-value=2.6  Score=33.96  Aligned_cols=61  Identities=5%  Similarity=-0.042  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEecC---------CeEEEEECCcccceeeeeEe-cCCCEEEEEEe-CCEEEEEecCCcEEEEE
Q psy16019          2 TSVLPTMWLGSQN---------GSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV-QGRVVCALADGSVAIFR   62 (121)
Q Consensus         2 ~~~~~tvwiGt~~---------g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~-~~~v~v~LanG~l~Vy~   62 (121)
                      +.....|..++++         +.|++|+......+.+.... ....+.++.+. +++-++..++++|.+++
T Consensus        69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCA  140 (723)
T ss_dssp             CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEES
T ss_pred             CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEE
Confidence            3445566667653         78899998763211121111 11125555555 33344444567777763

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=83.83  E-value=7.8  Score=33.30  Aligned_cols=81  Identities=9%  Similarity=0.032  Sum_probs=58.3

Q ss_pred             CEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceE---------EEeCC-----CCCceeEeeeeCCEEEEEeC-C
Q psy16019         38 SVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT---------VTLGL-----PHHSVRSLAAVYNKVWCGYK-N  102 (121)
Q Consensus        38 ~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---------i~lg~-----~~~pV~~m~~v~~~lw~~~g-n  102 (121)
                      |-...+..++.++|+|.||-|.-++|..++.|+.-.+.-         + ++.     +..-|.|+..-++.||.=|. +
T Consensus       163 Ph~L~avs~~~liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~l-f~~~~~~~~~~~Is~~~~~~~fLftL~~Dh  241 (729)
T 3f7f_A          163 PHFLFYVSPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRF-FSRSSKSDYDSVISCKLFHERYLIVLTQNC  241 (729)
T ss_dssp             EEEEEECSSSBEEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTT-CCTTCSSCCCCEEEEEEETTTEEEEEETTC
T ss_pred             CcEEEEECCCeEEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHh-hcCCCCCCcCceEEEeccCCcEEEEEEcCC
Confidence            555566668899999999999999998776553211100         1 111     12357777777889999999 5


Q ss_pred             eEEEEeCCCCcEEEEEE
Q psy16019        103 KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus       103 ~I~Vi~~~tl~i~~~~~  119 (121)
                      ++++=|.+|+++..+..
T Consensus       242 ~LRiWsL~t~~lv~t~D  258 (729)
T 3f7f_A          242 HLKIWDLTSFTLIQDYD  258 (729)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             eEEEEEcCCCceEEeec
Confidence            89999999999877654

>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1

Probab=83.72  E-value=5.2  Score=32.52  Aligned_cols=62  Identities=10%  Similarity=0.128  Sum_probs=39.3

Q ss_pred             EEEEEecCCcEEEEEcCCCCCCCC---CCceEEEeCCCCCceeEeeee--CCEEEEEeCCeEEEEeC
Q psy16019         48 RVVCALADGSVAIFRRGPDGQWDL---SKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKNKIHVVDP  109 (121)
Q Consensus        48 ~v~v~LanG~l~Vy~r~~~g~wd~---~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~gn~I~Vi~~  109 (121)
                      -+|+|..+|.|.=......+.++.   .-...+.+..++.||+.|.+.  .+.|+++.+.+|.=+..
T Consensus       423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~vpv  489 (495)
T 1q47_A          423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQLPL  489 (495)
T ss_dssp             EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEEES
T ss_pred             EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEEEH
Confidence            499999999975444433333311   112235665445899999887  48899999998876644

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=83.21  E-value=11  Score=27.14  Aligned_cols=92  Identities=14%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             CeEEEEECCcc-cceeeeeEecCCCEEEEEEeCCEEEEEecC------CcEEEEEcCCCCCCCCCCceEEEeCCCCCce-
Q psy16019         15 GSVFVHSAVSQ-WRRCLHSIQLKDSVLNIVHVQGRVVCALAD------GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSV-   86 (121)
Q Consensus        15 g~I~v~~~~~~-~~~~l~~~~l~~~V~~i~~~~~~v~v~Lan------G~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV-   86 (121)
                      ..+++|+.... |+ .+..+..+-.-.+....++++|+-.+.      ..+.+|+... +.|.       .++..+.|- 
T Consensus       169 ~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~-~~W~-------~~~~~p~~r~  239 (306)
T 3ii7_A          169 NSCEVYDPATETWT-ELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKL-NEWK-------MVSPMPWKGV  239 (306)
T ss_dssp             CCEEEEETTTTEEE-EECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTT-TEEE-------ECCCCSCCBS
T ss_pred             ceEEEeCCCCCeEE-ECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCC-CcEE-------ECCCCCCCcc
Confidence            44677776553 22 222222222222344457788876542      3567774332 2243       333321221 


Q ss_pred             -eEeeeeCCEEEEEeC-------CeEEEEeCCCCcEE
Q psy16019         87 -RSLAAVYNKVWCGYK-------NKIHVVDPKSLDVI  115 (121)
Q Consensus        87 -~~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~  115 (121)
                       .++...+++|++--|       +.+.++|+++.+-+
T Consensus       240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence             245556889888655       68999999886544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=82.46  E-value=11  Score=26.56  Aligned_cols=103  Identities=12%  Similarity=0.049  Sum_probs=61.0

Q ss_pred             CCeEEEEe-cCCeEEEEECCcccceeeeeEecC-CCEEEEEEe--CCEEEEEecC---CcEEEEEcCCCCCCCCCCceEE
Q psy16019          5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHV--QGRVVCALAD---GSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~--~~~v~v~Lan---G~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .+.+|+.. .+++|++++......+.+  +... .....|...  ++++|++-..   +.|.++..+  |    ...+.+
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g----~~~~~~  161 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--G----TNRRIL  161 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--S----CCCEEE
T ss_pred             CCeEEEEECCCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--C----CCcEEE
Confidence            45566554 467888888765322222  1112 345677776  5799999864   678777542  2    122333


Q ss_pred             EeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEE
Q psy16019         78 TLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIR  116 (121)
Q Consensus        78 ~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~  116 (121)
                      .-.....| +.|++.  ++.||++..  ++|.++|..+...+.
T Consensus       162 ~~~~~~~P-~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  203 (267)
T 1npe_A          162 AQDNLGLP-NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (267)
T ss_dssp             ECTTCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             EECCCCCC-cEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence            21111223 456665  579988887  689999998765443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=82.28  E-value=19  Score=29.30  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=59.7

Q ss_pred             CeEEEEecC-CeEEEEECCcccceeeeeE-ecC----CCEEEEEE-------e--CCEEEEEecCC-------cEEEEEc
Q psy16019          6 PTMWLGSQN-GSVFVHSAVSQWRRCLHSI-QLK----DSVLNIVH-------V--QGRVVCALADG-------SVAIFRR   63 (121)
Q Consensus         6 ~tvwiGt~~-g~I~v~~~~~~~~~~l~~~-~l~----~~V~~i~~-------~--~~~v~v~LanG-------~l~Vy~r   63 (121)
                      +.||+.-.. +.|.+++..+   +.+.++ ...    .....|..       .  .+.+|++.-++       .+.++.|
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~---~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r  228 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKN---RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKR  228 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTT---TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEEC
T ss_pred             CEEEEEECCCCeEEEEECCC---CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEec
Confidence            456665543 5566677665   223332 222    24677777       3  44699998876       2888888


Q ss_pred             CCCCCCCC-CCceEEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCC
Q psy16019         64 GPDGQWDL-SKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPK  110 (121)
Q Consensus        64 ~~~g~wd~-~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~  110 (121)
                      ..+|.|.- .....+.-..  .|. .+++.  ++.||++..  ++|+.+|++
T Consensus       229 ~~~G~~~~~~~~~~v~~~~--~p~-giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          229 NADGTFDDRSDIQLIAAYK--QCN-GATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             CTTSCCSTTSCEEEEEEES--CCC-CEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CCCCceeecccceeeccCC--Cce-EEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            88787742 1124443333  343 33444  588998776  579999987

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=81.92  E-value=14  Score=27.69  Aligned_cols=107  Identities=12%  Similarity=-0.005  Sum_probs=60.0

Q ss_pred             CCeEEEE-ecC-CeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEecC-CcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          5 LPTMWLG-SQN-GSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         5 ~~tvwiG-t~~-g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .+.||.. ..+ +.|+.++.....++.+..-.+ .....|..  .++++|++-+. +.|..|..+  |    ...+.+--
T Consensus       170 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~-~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G----~~~~~~~~  242 (349)
T 3v64_C          170 EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAKHHVIERANLD--G----SHRKAVIS  242 (349)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCSCEESCCSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETT--S----CSCEEEEC
T ss_pred             cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC-CCcceEEEeCCCCEEEEEECCCCEEEEEeCC--C----CceEEEEe
Confidence            3444443 334 778888766533332211011 12334455  47899999765 567777532  2    12233211


Q ss_pred             CCCCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      .....| ..|++.++.||.+..  ++|..+|..+++..+.+.
T Consensus       243 ~~~~~P-~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          243 QGLPHP-FAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             SSCSSE-EEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCCCCc-eEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            112345 366778889888775  689999987777665553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=81.73  E-value=10  Score=31.67  Aligned_cols=69  Identities=16%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             EEeCCEEEEEecC-CcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEee----eeCCEEEEEeC-------------
Q psy16019         43 VHVQGRVVCALAD-GSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLA----AVYNKVWCGYK-------------  101 (121)
Q Consensus        43 ~~~~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~----~v~~~lw~~~g-------------  101 (121)
                      .|...++||.-.+ +.|++.        |++..++   |.+... .....+.    +.++.+||+..             
T Consensus        98 ~~DG~~lfVnd~~~~rVavI--------dl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARV--------RCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEE--------ETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             CcCCCEEEEEcCCCCEEEEE--------ECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence            4567799997764 459999        7778774   454321 2344555    45799999952             


Q ss_pred             ------CeEEEEeCCCCcEEEEEEe
Q psy16019        102 ------NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus       102 ------n~I~Vi~~~tl~i~~~~~~  120 (121)
                            +.+.+||++|+++..++.|
T Consensus       169 ~~~~~~~~vtvID~~t~~v~~qI~V  193 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWEVAWQVLV  193 (595)
T ss_dssp             CGGGEEEEEEEEETTTTEEEEEEEE
T ss_pred             cccccCceEEEEECCCCeEEEEEEe
Confidence                  4899999999999998876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=81.08  E-value=12  Score=29.37  Aligned_cols=54  Identities=9%  Similarity=-0.158  Sum_probs=32.8

Q ss_pred             CCeEEEEecC----CeEEEEECCcccceeeeeE-ecCCCEEEEEEeC--CEEEEEecCC--cEEEE
Q psy16019          5 LPTMWLGSQN----GSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHVQ--GRVVCALADG--SVAIF   61 (121)
Q Consensus         5 ~~tvwiGt~~----g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~~--~~v~v~LanG--~l~Vy   61 (121)
                      ...+..++.+    +.|+++++.+.  + ...+ ..++.+.++.+..  ..++.+..+|  .|.+|
T Consensus       161 G~~la~~~~~~~~~~~i~~~d~~~g--~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~  223 (582)
T 3o4h_A          161 GDLIAGLGFFGGGRVSLFTSNLSSG--G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTV  223 (582)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETTTC--C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEEEcCCCCeEEEEEcCCCC--C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEE
Confidence            3344445555    77999997662  2 2233 3446778888874  3566667778  55555

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=80.80  E-value=9.4  Score=28.16  Aligned_cols=58  Identities=9%  Similarity=0.047  Sum_probs=40.1

Q ss_pred             CeEEEEe-c-----CCeEEEEECCcccceeeeeEecCC-------CEEEEEEe--CCEEEEEec----CCcEEEEEcCC
Q psy16019          6 PTMWLGS-Q-----NGSVFVHSAVSQWRRCLHSIQLKD-------SVLNIVHV--QGRVVCALA----DGSVAIFRRGP   65 (121)
Q Consensus         6 ~tvwiGt-~-----~g~I~v~~~~~~~~~~l~~~~l~~-------~V~~i~~~--~~~v~v~La----nG~l~Vy~r~~   65 (121)
                      +.+|+-- .     +++|++|+..+  .+.++++.+|.       .+.+|...  ++.+|++-.    ++.|.+|+...
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence            5677643 2     57999999875  34466666652       34677776  468999874    67899997653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=80.45  E-value=15  Score=27.00  Aligned_cols=107  Identities=14%  Similarity=0.035  Sum_probs=62.1

Q ss_pred             CCeEEEEe-cC-CeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecC-CcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          5 LPTMWLGS-QN-GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         5 ~~tvwiGt-~~-g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~Lan-G~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .+.||... .+ +.|+.++.....++.+..-.+ .....|...  ++++|++-+. +.|.+|..+  |    ...+++ .
T Consensus       131 ~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g----~~~~~~~~  203 (316)
T 1ijq_A          131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--G----GNRKTILE  203 (316)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETT--S----CSCEEEEE
T ss_pred             CCEEEEEccCCCCeEEEEcCCCCCeEEEEECCC-CCceEEEEeccCCEEEEEECCCCeEEEEecC--C----CceEEEee
Confidence            34454433 33 788888876533332211111 223345554  6799998764 578888543  2    223333 3


Q ss_pred             eCC-CCCceeEeeeeCCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGL-PHHSVRSLAAVYNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~-~~~pV~~m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+. ...| ..|++-++.||.+..  ++|..+|..+++..+.+.
T Consensus       204 ~~~~~~~P-~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          204 DEKRLAHP-FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             CTTTTSSE-EEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             cCCccCCc-EEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            321 2345 467777888877775  689999998887665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.84
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.84
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.79
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.69
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.63
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.63
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.56
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.51
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.51
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.46
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.42
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.38
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.37
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.32
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.29
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.28
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.26
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	98.23
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.21
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.11
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.08
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.04
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.02
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.87
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.69
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.63
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.58
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.57
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.53
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.05
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.11
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.06
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	95.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	95.72
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	95.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.16
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	94.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.21
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.15
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.62
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.47
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.43
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.27
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.87
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.75
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	91.84
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	91.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	90.6
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	89.36
d1shyb1	476	Hepatocyte growth factor receptor {Human (Homo sap	89.32
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	88.47
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	84.65

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.5e-07  Score=66.09  Aligned_cols=109  Identities=18%  Similarity=0.142  Sum_probs=83.1

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCC-
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-   81 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~-   81 (121)
                      ....+..|++||.|.+|+...  .++++.+.- ...|.++...++.+++|..||.|.+|+.....     ....+.... 
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~~~~  258 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVET--GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ-----CLQTLQGPNK  258 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTT--CCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----EEEEECSTTS
T ss_pred             CCCEEEEEeCCCeEEEeeccc--ceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccccc-----ccccccccce
Confidence            345788999999999999887  466666654 47899999999999999999999998543211     112222211 


Q ss_pred             CCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         82 PHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        82 ~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ...++.++...++.+..|+. +.|++.|.++++..++|.
T Consensus       259 ~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            24688888888888888887 589999999999988875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.5e-07  Score=67.35  Aligned_cols=107  Identities=14%  Similarity=0.112  Sum_probs=85.2

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      .....+..|+.+|.|.+|+..+  .+.++.+.++++|+++.+.  ++.+++|..||.+.+|        |++....+..-
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~--------d~~~~~~~~~~  262 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLRE--GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL--------HVNKPDKYQLH  262 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTSSCEEEEC
T ss_pred             cccccccccccccccccccccc--ceeecccccccceEEEEEcccccccceeccccccccc--------ccccccccccc
Confidence            4456899999999999999887  5678888899999999986  4578899999999998        55555555444


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ....+|+++...  ++.|..|+. +.|++.|..+++....++
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc
Confidence            445899999877  356777776 679999999998876654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.5e-07  Score=62.14  Aligned_cols=114  Identities=12%  Similarity=0.170  Sum_probs=83.6

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC---------------
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG---------------   67 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g---------------   67 (121)
                      ..+.|..|++||.|.||+..+  .+++++++ +.++|++|.+.++.+++|..||++.+|......               
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~--~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~  101 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNT--LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL  101 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSS--CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred             cCCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccc
Confidence            456788999999999999987  57788886 458999999999999999999999998764321               


Q ss_pred             -----------------CCCCCCce----EEEeCCCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         68 -----------------QWDLSKYH----TVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        68 -----------------~wd~~~~~----~i~lg~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                                       .||.....    ...+.....+|.++......+..+++ +.|.+.|..+.+....++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~  175 (293)
T d1p22a2         102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN  175 (293)
T ss_dssp             ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEc
Confidence                             12222211    11222224677777777777777766 579999999988887765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=1.1e-06  Score=61.78  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=82.0

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-Ee
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL   79 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~l   79 (121)
                      ....+..|..+|.|.+|+..+  .++++++.- .++|.++.+.  ++.+++|..||.+.+|        |+.....+ .+
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~--~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~--------~~~~~~~~~~~  264 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------DLRADQELMTY  264 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEEEEE
T ss_pred             ccceeEEeecCceEEEEECCC--CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEE--------eeccccccccc
Confidence            345677899999999999887  567777754 5899999987  4578889999999998        55554443 22


Q ss_pred             --CCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         80 --GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 --g~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                        .....+|+++...  ++.|.+|+. +.|+++|..+++..++|.
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence              3335789998877  467888877 689999999999988775

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.63  E-value=4.2e-07  Score=64.24  Aligned_cols=109  Identities=11%  Similarity=0.045  Sum_probs=75.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      .....+..|+++|.|.+|+...........+..+++|+++.+..  ..+++|..||.+.+|.......  .....  .+.
T Consensus       146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~--~~~  221 (299)
T d1nr0a2         146 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE--LAHTN--SWT  221 (299)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE--ESCCC--CCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc--ccc
Confidence            44567889999999999998763223344556678999999874  5788899999999996543211  11111  122


Q ss_pred             CCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEE
Q psy16019         81 LPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVI  115 (121)
Q Consensus        81 ~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~  115 (121)
                      ....||+|+...  ++.|+.|+. +.|++.|.++.+..
T Consensus       222 ~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             ccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            224799999876  466777776 68999998876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=4.6e-07  Score=63.80  Aligned_cols=102  Identities=15%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc-eEEEeC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLG   80 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~-~~i~lg   80 (121)
                      ...+.+..|++||.|.+|+..+  .+++..++- .++|.++.+.++.++.|..||+|.+|        |+++. +.+...
T Consensus       211 ~~~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iw--------d~~~~~~~~~~~  280 (355)
T d1nexb2         211 HERKRCISASMDTTIRIWDLEN--GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW--------DANDYSRKFSYH  280 (355)
T ss_dssp             TTTTEEEEEETTSCEEEEETTT--CCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEE--------ETTTCCEEEEEE
T ss_pred             ccceeeecccccceEEeeeccc--cccccccccccccccccccccceeeeeecccccccc--------cccccceecccc
Confidence            4567899999999999999887  456666654 47999999999999999999999998        44444 334444


Q ss_pred             CCCCceeEe---eeeCCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         81 LPHHSVRSL---AAVYNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        81 ~~~~pV~~m---~~v~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                      .  .++.++   ...+.-+.+|..+.|++.|.++++..+
T Consensus       281 ~--~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         281 H--TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             C--TTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC
T ss_pred             c--CCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence            4  344433   333455666666899999999988654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.56  E-value=3.9e-06  Score=61.07  Aligned_cols=111  Identities=12%  Similarity=0.100  Sum_probs=78.0

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCC-CCCCCceEEEeCCC
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQ-WDLSKYHTVTLGLP   82 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~-wd~~~~~~i~lg~~   82 (121)
                      .+..|++||.|.+|+...  .++...+.- ..+|.++.+.  .+.+++|..||.+.+|+...... ..++.......+. 
T Consensus       161 ~l~sgs~d~~i~i~d~~~--~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h-  237 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-  237 (311)
T ss_dssp             EEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-
T ss_pred             eecccccccccccccccc--cccccccccccccccccccCccccccccccccccccccccccccccccccccccccccc-
Confidence            467799999999999887  455666644 5799999996  45788899999999995432210 0000000001111 


Q ss_pred             CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         83 HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        83 ~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      ..+|++|...  ++.|..|+. +.|+|.|.++++..++++.
T Consensus       238 ~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         238 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC
Confidence            3689999887  477887777 5799999999999988763

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9.2e-06  Score=58.75  Aligned_cols=109  Identities=13%  Similarity=0.163  Sum_probs=79.9

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .....+..|++||.|.+|+......+....+... .+|.++.+..  ..++++..|+.+.+|        |+.+.+.. .
T Consensus       107 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~--------~~~~~~~~~~  178 (337)
T d1gxra_         107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW--------DLHNQTLVRQ  178 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE--------ETTTTEEEEE
T ss_pred             CCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccccccccc
Confidence            3556788999999999999877545556666544 6888888764  467778899999998        44444443 2


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ......+|+++...  ++.+.+|+. +.|.++|.++.+..+.++
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~  222 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccceeecccc
Confidence            22235899999876  467777776 689999999998877765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.7e-06  Score=57.29  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=82.4

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~   82 (121)
                      .+.+..|+.+|.|.+++...  .+++..+. .+..+.++.+.+.++++|..||+|.+|        |+...+.+ .+...
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~--------d~~~~~~~~~~~~~  216 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW--------DVETGNCIHTLTGH  216 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEE--------ETTTCCEEEEECCC
T ss_pred             cceeeeecCCCeEEEeeccc--ceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEe--------ecccceeeeEeccc
Confidence            45678899999999999876  45666664 346888888889999999999999998        44444443 23333


Q ss_pred             CCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      ..+|.++.+.++.|..|+. +.|++.|..+.+..+.++
T Consensus       217 ~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  254 (342)
T d2ovrb2         217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ  254 (342)
T ss_dssp             CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccceeEEecCCCEEEEEcCCCEEEEEeccccccccccc
Confidence            4789999999999999888 589999999998887764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.46  E-value=3.8e-06  Score=61.91  Aligned_cols=105  Identities=11%  Similarity=0.054  Sum_probs=74.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .....+-.|+++|.|.||+......++.+.++ +.++|.+|.+.  ++++..|..||+|.||.....     ...+.+.+
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~-----~~~~~~~~   91 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-----TWKPTLVI   91 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-----EEEEEEEC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc-----cccccccc
Confidence            45567888999999999998653223566664 55899999987  567888999999999854321     01133455


Q ss_pred             CCCCCceeEeeee--CCEEEEEeCC-eEEEEeCCCC
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYKN-KIHVVDPKSL  112 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~gn-~I~Vi~~~tl  112 (121)
                      .....+|.||...  ++.+.+|+++ .|.+.+.+..
T Consensus        92 ~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             ccccccccccccccccccceeecccCcceeeeeecc
Confidence            5446899999876  5778888884 5777655443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1.4e-05  Score=57.71  Aligned_cols=114  Identities=22%  Similarity=0.131  Sum_probs=77.0

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe--------cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCC-CCCC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--------LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQ-WDLS   72 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--------l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~-wd~~   72 (121)
                      ....+..|++||.|.+|+....  +....+.        +.++|.++.+..  ..+++|..||.|.+|+...... .+..
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  293 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETG--FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  293 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTC--CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCeEEEEcCCCeEEEeecccC--ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence            3457888999999999998873  2232221        346899999874  4788899999999997643221 1111


Q ss_pred             Cc----eEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         73 KY----HTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        73 ~~----~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+    ..........+|.++...  ++.|.+|+. +.|++.|..+++..++|+
T Consensus       294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            11    112222224789998887  467888888 689999999999988875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=1.7e-05  Score=54.40  Aligned_cols=108  Identities=14%  Similarity=0.097  Sum_probs=78.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe----------------------CCEEEEEecCCcEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV----------------------QGRVVCALADGSVA   59 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~----------------------~~~v~v~LanG~l~   59 (121)
                      .....+..|+.||.|.+|+...  .+.+..+. ....+.++.+.                      ...+++|..||.+.
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVAT--KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeecc--ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            3456788899999999999887  45555554 34677777654                      34688899999999


Q ss_pred             EEEcCCCCCCCCCCceE-EEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         60 IFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        60 Vy~r~~~g~wd~~~~~~-i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +|.        ..+.+. .++.....+|+++...  ++.|.+|+. +.|.+.|..+.+..++|+.
T Consensus       231 ~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  287 (317)
T d1vyhc1         231 MWD--------VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  287 (317)
T ss_dssp             EEE--------TTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             EEE--------CCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence            984        444433 2333334899999877  356777776 6899999999998888753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=6.3e-06  Score=56.64  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec-CCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCc---eEEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-KDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKY---HTVT   78 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~---~~i~   78 (121)
                      ...+..|++||.|.+|+..+  .+++.++.- ..+|.++.+..  ..+++|..||+|.+|        |+.+.   +.+.
T Consensus       217 ~~~~~~~~~d~~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw--------d~~~~~~~~~~~  286 (317)
T d1vyhc1         217 GPFLLSGSRDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW--------DYKNKRCMKTLN  286 (317)
T ss_dssp             CCEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEE--------CCTTSCCCEEEE
T ss_pred             CceeEeccCCCEEEEEECCC--CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEE--------ECCCCcEEEEEc
Confidence            35678899999999999887  567777764 57999999864  468889999999998        44443   3344


Q ss_pred             eCCCCCceeEeeeeC--CEEEEEeC-CeEEEEe
Q psy16019         79 LGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVD  108 (121)
Q Consensus        79 lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~  108 (121)
                      -..  .+|.+|....  +.|..|+. +.|+|.|
T Consensus       287 ~h~--~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         287 AHE--HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCS--SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCC--CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            333  8999998873  56777777 4687754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.32  E-value=9.8e-06  Score=58.87  Aligned_cols=98  Identities=12%  Similarity=0.165  Sum_probs=70.6

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe--------cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ--------LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLS   72 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~--------l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~   72 (121)
                      ...+.+..|+.||.|.+|+..+.  +.++.++        +.++|.++.+.  ++.+++|..||+|.+|        |++
T Consensus       199 p~~~~l~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iw--------d~~  268 (311)
T d1nr0a1         199 PDGSLFASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW--------NVA  268 (311)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTC--CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE--------ETT
T ss_pred             ccccccccccccccccccccccc--cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEE--------ECC
Confidence            45678889999999999998874  3333332        24689999987  4688899999999997        555


Q ss_pred             CceE---EEeCCC-CCceeEeeeeCCEEEEEeC-CeEEEEeCC
Q psy16019         73 KYHT---VTLGLP-HHSVRSLAAVYNKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        73 ~~~~---i~lg~~-~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~  110 (121)
                      +.+.   +..+.+ ...+.++...++.|..+.. +.|.++|++
T Consensus       269 t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            5544   444442 2345566667788887776 689999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=2.2e-05  Score=54.91  Aligned_cols=96  Identities=11%  Similarity=0.085  Sum_probs=68.1

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEe---cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ---LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV   77 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~---l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i   77 (121)
                      .....+..|++||.|.+|+...  .+.+..+.   ...+|.++.+..  +.+++|..||+|.+|        |+.+.+.+
T Consensus       236 p~~~~l~s~s~d~~i~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iw--------d~~~~~~~  305 (340)
T d1tbga_         236 PNGNAFATGSDDATCRLFDLRA--DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW--------DALKADRA  305 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTT--TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEE--------ETTTCCEE
T ss_pred             CCCCEEEEEeCCCeEEEEeecc--cccccccccccccCceEEEEECCCCCEEEEEECCCEEEEE--------ECCCCcEE
Confidence            3456888999999999999887  34444443   236899998864  479999999999998        44444343


Q ss_pred             -EeCCCCCceeEeeeeC--CEEEEEeC-CeEEEEe
Q psy16019         78 -TLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVVD  108 (121)
Q Consensus        78 -~lg~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~  108 (121)
                       .+.....||+++....  ..|..|+. +.|+|-|
T Consensus       306 ~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence             3432248999999874  45666666 5677753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.28  E-value=5.1e-05  Score=52.44  Aligned_cols=105  Identities=13%  Similarity=0.245  Sum_probs=72.9

Q ss_pred             CCCCeEEEEecC-CeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecC---CcEEEEEcCCCCCCCCCCceE
Q psy16019          3 SVLPTMWLGSQN-GSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALAD---GSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         3 ~~~~tvwiGt~~-g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~Lan---G~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      .....+|++..+ +.+.++....  .+....+..+..+..+...  .+.+|++.++   ++|.+|        |..+.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~--------D~~t~~~  236 (301)
T d1l0qa2         167 PDGTKVYVANFDSMSISVIDTVT--NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI--------DTGTNKI  236 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTT--TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEE--------ETTTTEE
T ss_pred             ccccceeeecccccccccccccc--eeeeecccccCCcceeeccccccccccccccceeeeeeee--------ecCCCeE
Confidence            345567777654 5666777665  4556666777666666654  5578888766   467776        6666555


Q ss_pred             ---EEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         77 ---VTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        77 ---i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                         +..+.   .++++++.  ++.||++++  +.|.|+|++|+++.+++++
T Consensus       237 ~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         237 TARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence               34443   45788776  478998776  6899999999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=6.8e-05  Score=52.20  Aligned_cols=104  Identities=16%  Similarity=0.124  Sum_probs=78.2

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceE-EEeC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLG   80 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~-i~lg   80 (121)
                      .+.+..|..++.|.+|+..+  .+.+.... ....+.++.+.  .+.++++..||+|.+|.        ...... ..+.
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d--------~~~~~~~~~~~  240 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD--------LENGELMYTLQ  240 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE--------TTTCCEEEEEC
T ss_pred             cceeeeecccceeeeeeccc--ccceeeeeccccccccccccccceeeecccccceEEeee--------ccccccccccc
Confidence            45778899999999999877  45555554 34677777765  56899999999999984        444333 2343


Q ss_pred             CCCCceeEeeeeCCEEEEEeC-CeEEEEeCCCCcEEEEE
Q psy16019         81 LPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        81 ~~~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~tl~i~~~~  118 (121)
                      ....+|.++...++.|+.|+. +.|++.|..+.+....+
T Consensus       241 ~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  279 (355)
T d1nexb2         241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY  279 (355)
T ss_dssp             CCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccceeeeeecccccccccccccceeccc
Confidence            335899999999999999888 57999999998765544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=4.1e-05  Score=56.57  Aligned_cols=106  Identities=16%  Similarity=0.121  Sum_probs=72.9

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeE-------ecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceE
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSI-------QLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~-------~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      +.+-.|++||.|.||++...  +++..+       .++++|.++.++.  ..+++|..|+++.++     ..||++.-+.
T Consensus       196 g~lasgs~Dg~i~iwd~~~~--~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i-----~lwd~~~g~~  268 (393)
T d1sq9a_         196 GLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI-----TLYETEFGER  268 (393)
T ss_dssp             SEEEEECTTSEEEEEETTTT--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE-----EEEETTTCCE
T ss_pred             CEEEEEeCCCcEEEEeeccc--ccccccccccccccccceEEEcccccccceeeeecCCCCccee-----eeccccccee
Confidence            36778999999999998863  333333       2457999999864  578888888864332     1235443322


Q ss_pred             E-Ee--------------CCCCCceeEeeeeC--CEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         77 V-TL--------------GLPHHSVRSLAAVY--NKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        77 i-~l--------------g~~~~pV~~m~~v~--~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      + ++              |. ..+|.++....  +.|.-|+. +.|++-|.++++..+.|+
T Consensus       269 ~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         269 IGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             EEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            1 11              11 36799999873  56666666 689999999999998875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.8e-05  Score=51.13  Aligned_cols=96  Identities=15%  Similarity=0.126  Sum_probs=74.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEE-EeCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLP   82 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~lg~~   82 (121)
                      ...+..++.||.|.+|+...  .+.+..++-+ ..|.++...+..+++|..||+|.+|        |+...+.+ .....
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~--------d~~~~~~~~~~~~~  217 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTST--CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW--------DIECGACLRVLEGH  217 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE--------ETTTCCEEEEECCC
T ss_pred             ccccccccCCCceeeecCCC--CcEEEEEcccccccccccCCCCeEEEecCCCEEEEE--------ecccceeeeeeccc
Confidence            34567889999999999887  4667777544 6899999999999999999999998        55555443 33333


Q ss_pred             CCceeEeeeeCCEEEEEeC-CeEEEEeCC
Q psy16019         83 HHSVRSLAAVYNKVWCGYK-NKIHVVDPK  110 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~g-n~I~Vi~~~  110 (121)
                      ..++.++...++.|.+|+. +.|++.|..
T Consensus       218 ~~~v~~~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         218 EELVRCIRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             SSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred             ceeeeeccccceEEEEEcCCCEEEEEECC
Confidence            5788888888888988887 689998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=0.00015  Score=52.16  Aligned_cols=104  Identities=14%  Similarity=0.040  Sum_probs=70.8

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeE----ecCCCEEEEEEeC---CEEEEEecCCcEEEEEcCCCCCCCCCCceEE-E
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSI----QLKDSVLNIVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-T   78 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~----~l~~~V~~i~~~~---~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i-~   78 (121)
                      .+..|++||.+.+|+....  +...++    ...+.|.++.++.   ..+.+|..||.|.+|        |..+.+.+ .
T Consensus       174 ~~~~~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iw--------d~~~~~~~~~  243 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF--------DGKSGEFLKY  243 (325)
T ss_dssp             EEEEEETTTEEEEEETTTB--EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE--------ETTTCCEEEE
T ss_pred             eEEEeeccccccccccccc--ccceecccccCCCCccEEeeeccccceeccccccccceeee--------eecccccccc
Confidence            3566889999999997763  333333    2346899999974   356668899999998        44444333 4


Q ss_pred             eCCCCCceeEeee----e-CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         79 LGLPHHSVRSLAA----V-YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        79 lg~~~~pV~~m~~----v-~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                      +.....|+.++..    . ++.|..|.. +.|+|.|.++.+..+.+.+
T Consensus       244 l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~  291 (325)
T d1pgua1         244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL  291 (325)
T ss_dssp             CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence            4433355554332    2 456777666 6799999999999888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.08  E-value=0.00017  Score=49.69  Aligned_cols=100  Identities=19%  Similarity=0.251  Sum_probs=74.1

Q ss_pred             eEEE-EecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEe-cCCcEEEEEcCCCCCCCCCCceE---EEe
Q psy16019          7 TMWL-GSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT---VTL   79 (121)
Q Consensus         7 tvwi-Gt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~---i~l   79 (121)
                      .+|+ +++++.|.|+++.+  .+.++++++.+.+..+....  .++||+. .+|.|.+|        |+...+.   +..
T Consensus         3 ~~yV~~~~~~~v~v~D~~t--~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~--------d~~t~~~~~~~~~   72 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTS--NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSII--------DTATNNVIATVPA   72 (301)
T ss_dssp             EEEEEETTTTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEE--------ETTTTEEEEEEEC
T ss_pred             EEEEEECCCCEEEEEECCC--CeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEE--------ECCCCceeeeeec
Confidence            3565 56899999999887  57889999998888888874  4788765 57899998        5655544   333


Q ss_pred             CCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         80 GLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        80 g~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      +.  .| +.+...  ++.+++++.  ..+.+.+..+.+..+.++
T Consensus        73 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (301)
T d1l0qa2          73 GS--SP-QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK  113 (301)
T ss_dssp             SS--SE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cc--cc-cccccccccccccccccccceeeecccccceeeeecc
Confidence            33  44 566665  466777665  579999999998887765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.04  E-value=2.7e-05  Score=54.49  Aligned_cols=100  Identities=14%  Similarity=0.081  Sum_probs=66.7

Q ss_pred             cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee
Q psy16019         13 QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV   92 (121)
Q Consensus        13 ~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v   92 (121)
                      .++.+.+++.................+.++....+..++..+++.+.+|        |+...+.+..-.....+.+|++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~--------d~~~~~~~~~~~~~~~~~~~~~s  288 (337)
T d1pbyb_         217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF--------DLEKNASIKRVPLPHSYYSVNVS  288 (337)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEE--------ETTTTEEEEEEECSSCCCEEEEC
T ss_pred             cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccccEEEE--------ECCCCcEEEEEcCCCCEEEEEEC
Confidence            3456677766552111112223445777777776665666668899887        67766664322223567888877


Q ss_pred             --CCEEEEEeC-CeEEEEeCCCCcEEEEEEe
Q psy16019         93 --YNKVWCGYK-NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        93 --~~~lw~~~g-n~I~Vi~~~tl~i~~~~~~  120 (121)
                        ++.||.|.. ++|.|+|++|++..+++.+
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence              578999876 7899999999999998865

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=0.00025  Score=50.79  Aligned_cols=106  Identities=13%  Similarity=0.132  Sum_probs=74.7

Q ss_pred             CCCeEEEEecCCeEEEEECCcccceeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          4 VLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         4 ~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ....+..|++||.|.+|+...  .+.+..+. ..+.|.++.+..  ..+++|..+|.+.+|        |......+...
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~--------d~~~~~~~~~~  201 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW--------DLRTGQCSLTL  201 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE--------ETTTTEEEEEE
T ss_pred             CCCcceecccccccccccccc--cccccccccccccccccccccccccccccccceeeeee--------ecccccccccc
Confidence            456788999999999999887  45566654 457999999874  479999999999998        44444443221


Q ss_pred             CCCCceeEeeee---CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         81 LPHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        81 ~~~~pV~~m~~v---~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .......++...   ++.|..|+. +.|.++|..+.+..+.++
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~  244 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD  244 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec
Confidence            111344444443   356777766 689999999988877654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.98  E-value=9.1e-05  Score=51.68  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=72.3

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCC---CEEEEEEeC--CEEEEE-ecCCcEEEEEcCCCCCCCCCCceE---E
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD---SVLNIVHVQ--GRVVCA-LADGSVAIFRRGPDGQWDLSKYHT---V   77 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~---~V~~i~~~~--~~v~v~-LanG~l~Vy~r~~~g~wd~~~~~~---i   77 (121)
                      .+..|++|+.|+||+..+  .+.++++++++   .+.+|.+.+  .++||+ ..||.|.+|        |++..+.   +
T Consensus         3 ~~vt~~~d~~v~v~D~~s--~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~--------D~~t~~~~~~~   72 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEK--MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI--------DLVTGETLGRI   72 (337)
T ss_dssp             EEEEEETTTEEEEEETTT--TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEE--------ETTTCCEEEEE
T ss_pred             EEEEEcCCCEEEEEECCC--CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEE--------ECCCCcEEEEE
Confidence            577899999999999988  57888898863   577888874  468876 578999998        4444433   3


Q ss_pred             EeCCCC---CceeEeeee--CCEEEEEe-------------CCeEEEEeCCCCcEEEEEEe
Q psy16019         78 TLGLPH---HSVRSLAAV--YNKVWCGY-------------KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        78 ~lg~~~---~pV~~m~~v--~~~lw~~~-------------gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ....+.   ..+..+.+.  ++.++++.             .+.+.++|..+++..+.++.
T Consensus        73 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  133 (337)
T d1pbyb_          73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             ecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc
Confidence            333221   112233333  46776664             26899999999999888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=0.00053  Score=47.39  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=73.1

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCC-cEEEEEcCCCCCCCCCCceE-EEeCCC-
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADG-SVAIFRRGPDGQWDLSKYHT-VTLGLP-   82 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG-~l~Vy~r~~~g~wd~~~~~~-i~lg~~-   82 (121)
                      +.+.+...++.+.+++...  .+.++.++...++.++...++.++++.+|| .+.+|+        +.+... ..+..+ 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~--------~~~~~~~~~~~~~~  161 (287)
T d1pgua2          92 GFTAVLTNDDDLLILQSFT--GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK--------LSDLEVSFDLKTPL  161 (287)
T ss_dssp             SEEEEEETTSEEEEEETTT--CCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEE--------TTEEEEEEECSSCC
T ss_pred             CceEEEeecccceeeeccc--eeeeeeccccceeeeeeccCcceeeeccccceeeeee--------ccccceeeeeeecc
Confidence            3455556667777777666  456777788888889999999999999997 577874        433333 233333 


Q ss_pred             CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEE
Q psy16019         83 HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIR  116 (121)
Q Consensus        83 ~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~  116 (121)
                      ..++++|...  ++.|.+|+. +.|.++|..+.+...
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  198 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT  198 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCceeEEEeccCccccccccccccccceeeccccccc
Confidence            4789999877  467888887 589999999987654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=0.00025  Score=53.00  Aligned_cols=101  Identities=13%  Similarity=0.102  Sum_probs=72.8

Q ss_pred             EEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCce---E--EEeCC
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYH---T--VTLGL   81 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~---~--i~lg~   81 (121)
                      -...+||.|.|+++..  .+++++++....|..|.+.  +.++|++..||++.+|        |++..+   +  +..+.
T Consensus        36 V~~~~dg~v~vwD~~t--~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vw--------d~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          36 VTLRDAGQIALVDGDS--KKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMI--------DLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             EEETTTTEEEEEETTT--CSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEE--------ETTSSSCEEEEEEECCS
T ss_pred             EEEcCCCEEEEEECCC--CcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEE--------EccCCceeEEEEEeCCC
Confidence            4467899999999988  6889999988889999987  4589999999999998        443332   2  33333


Q ss_pred             -CCCceeEeee--eCCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         82 -PHHSVRSLAA--VYNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        82 -~~~pV~~m~~--v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                       +...+.++..  -++.|++++.  +.+.++|.++++..+.+.
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~  148 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS  148 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee
Confidence             1111122221  2578888764  789999999999887654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=7.7e-05  Score=51.36  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccc--eeeeeEecCCCEEEEEEeC--C-EEEEEecCCcEEEEEc
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWR--RCLHSIQLKDSVLNIVHVQ--G-RVVCALADGSVAIFRR   63 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~--~~l~~~~l~~~V~~i~~~~--~-~v~v~LanG~l~Vy~r   63 (121)
                      +..+.+..|+.||.|.||+.....+  +....+.+.++|+|+.+.+  + .+++|..||++.+|..
T Consensus        21 p~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_          21 PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            4567889999999999999765322  2344556789999999863  2 6888899999999843

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=0.00025  Score=49.61  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=69.2

Q ss_pred             eEEEEe-cCCeEEEEECCcccc-eeeeeEecCCCEEEEEEeCC--EEEEEec-CCcEEEEEcCCCCCCCCCCceE---EE
Q psy16019          7 TMWLGS-QNGSVFVHSAVSQWR-RCLHSIQLKDSVLNIVHVQG--RVVCALA-DGSVAIFRRGPDGQWDLSKYHT---VT   78 (121)
Q Consensus         7 tvwiGt-~~g~I~v~~~~~~~~-~~l~~~~l~~~V~~i~~~~~--~v~v~La-nG~l~Vy~r~~~g~wd~~~~~~---i~   78 (121)
                      +|++.+ +|+.|+||++...-. +.++.+..++.|.+|.+..+  ++||+.. ||.|.+|+...++    .....   ..
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~----~~~~~~~~~~   80 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD----GALTFAAESA   80 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT----CCEEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC----CcEEEeeecc
Confidence            555555 999999999875322 45677788999999998854  7888876 7999999754322    11122   23


Q ss_pred             eCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRP  117 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~  117 (121)
                      .+.  .| ..++..  ++.|+.++.  ..|.+++..+......
T Consensus        81 ~~~--~p-~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~  120 (333)
T d1ri6a_          81 LPG--SL-THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  120 (333)
T ss_dssp             CSS--CC-SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             cCC--Cc-eEEEEcCCCCEEeecccCCCceeeeccccccceec
Confidence            333  33 456655  578998875  4788887766655443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=0.00032  Score=48.73  Aligned_cols=102  Identities=13%  Similarity=0.054  Sum_probs=67.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccc-eeeeeEe-cCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWR-RCLHSIQ-LKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~-~~l~~~~-l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      .....+..|+++|.|.+|+..+... .....+. +.++|.++.+.+  ..+++|..||.|.+|+.....     ....+.
T Consensus       189 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~-----~~~~~~  263 (299)
T d1nr0a2         189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS-----DHPIII  263 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT-----SCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCC-----cceEEE
Confidence            4456788999999999999876322 1233333 347999999864  468888999999998543221     112232


Q ss_pred             e-CCCCCceeEeeee-CCEEEEEeC-CeEEEEeC
Q psy16019         79 L-GLPHHSVRSLAAV-YNKVWCGYK-NKIHVVDP  109 (121)
Q Consensus        79 l-g~~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~  109 (121)
                      . +....+|.++... ++.|..|+. +.|.+-|.
T Consensus       264 ~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             TTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             ecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            2 2334688887654 577777776 57888764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=0.00031  Score=48.65  Aligned_cols=96  Identities=11%  Similarity=0.067  Sum_probs=63.5

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeee-eE-ecCCCEEEEEEe------------CCEEEEEecCCcEEEEEcCCCCC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLH-SI-QLKDSVLNIVHV------------QGRVVCALADGSVAIFRRGPDGQ   68 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~-~~-~l~~~V~~i~~~------------~~~v~v~LanG~l~Vy~r~~~g~   68 (121)
                      .....+..|+.+|.|.+|+..+.  +... .+ .+.++|.++.++            +..+..|..||+|.||+      
T Consensus       172 ~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~------  243 (287)
T d1pgua2         172 PSETYIAAGDVMGKILLYDLQSR--EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS------  243 (287)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTT--EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE------
T ss_pred             cCccccccccccccccceeeccc--ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEE------
Confidence            44567889999999999998873  3222 22 334789998764            34567788999999984      


Q ss_pred             CCCCCc-eEEE-eCCCCCceeEeeeeC-CEEEEEeC-CeEEEEe
Q psy16019         69 WDLSKY-HTVT-LGLPHHSVRSLAAVY-NKVWCGYK-NKIHVVD  108 (121)
Q Consensus        69 wd~~~~-~~i~-lg~~~~pV~~m~~v~-~~lw~~~g-n~I~Vi~  108 (121)
                        ++.+ +.+. +.....+|+++...+ +.+..+.. +.|++-+
T Consensus       244 --~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         244 --VKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             --SSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             --CCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence              3332 2333 222248999998764 55554444 5777754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=0.0003  Score=51.28  Aligned_cols=107  Identities=8%  Similarity=0.022  Sum_probs=72.4

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeE-ecCCCEEEEEEe--CCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSI-QLKDSVLNIVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~-~l~~~V~~i~~~--~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      +..+.+-.|++||.|.||+..+...++...+ ....+|+++.+.  ++.+++|..||++.+|.-..+..    .......
T Consensus        61 p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~----~~~~~~~  136 (371)
T d1k8kc_          61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND----WWVCKHI  136 (371)
T ss_dssp             TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT----EEEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccc----ccccccc
Confidence            4456788899999999999876322223332 334789999986  45799999999999986543221    1112233


Q ss_pred             CCC-CCceeEeeee--CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GLP-HHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~~-~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      ..+ ..+|.|+...  +..|..|+. +.|.++|....+
T Consensus       137 ~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~  174 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  174 (371)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             ccccccccccccccccccceeccccCcEEEEEeeccCc
Confidence            222 4789999877  356766666 679999886644

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.85  E-value=0.0005  Score=52.15  Aligned_cols=104  Identities=10%  Similarity=-0.005  Sum_probs=74.3

Q ss_pred             EEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCce
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSV   86 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV   86 (121)
                      -.-.++|.|.|++...  .+++.+++....|..+.+..  .++|++..||++.+|.-..+.   ......|+.+.  .|-
T Consensus        36 v~~~d~g~v~v~D~~t--~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~---~~~~~~i~~~~--~~~  108 (432)
T d1qksa2          36 VTLRDAGQIALIDGST--YEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE---PTTVAEIKIGS--EAR  108 (432)
T ss_dssp             EEETTTTEEEEEETTT--CCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS---CCEEEEEECCS--EEE
T ss_pred             EEEcCCCEEEEEECCC--CcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC---ceEEEEEecCC--CCC
Confidence            4556799999999888  68899998888899999984  489999999999998432211   00112245554  332


Q ss_pred             ---eEee--eeCCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         87 ---RSLA--AVYNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        87 ---~~m~--~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                         .+..  +-++.|++++.  +.|.++|.++++..+.+.
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~  148 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  148 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeec
Confidence               2211  12578887554  789999999999998765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.80  E-value=0.00047  Score=48.41  Aligned_cols=100  Identities=9%  Similarity=0.003  Sum_probs=70.1

Q ss_pred             EEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCC--EE-EEEecCC-cEEEEEcCCCCCCCCCCceEEEeCCCCC
Q psy16019          9 WLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQG--RV-VCALADG-SVAIFRRGPDGQWDLSKYHTVTLGLPHH   84 (121)
Q Consensus         9 wiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~--~v-~v~LanG-~l~Vy~r~~~g~wd~~~~~~i~lg~~~~   84 (121)
                      ......|.|++|+..+  .+ ..++.++..|.++.+..+  .+ +++..+| .|.+|        |.+......+-....
T Consensus        18 ~a~~~~g~v~v~d~~~--~~-~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~--------d~~~~~~~~~~~~~~   86 (360)
T d1k32a3          18 IAFVSRGQAFIQDVSG--TY-VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY--------DYRTGKAEKFEENLG   86 (360)
T ss_dssp             EEEEETTEEEEECTTS--SB-EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEE--------ETTTCCEEECCCCCC
T ss_pred             EEEEECCeEEEEECCC--Cc-EEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEE--------ECCCCcEEEeeCCCc
Confidence            3444568999999877  33 333456789999999754  34 4455555 45665        555555555555558


Q ss_pred             ceeEeeee--CCEEEEEeC-CeEEEEeCCCCcEEEEEE
Q psy16019         85 SVRSLAAV--YNKVWCGYK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        85 pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      +|.++...  ++.|.++.+ +.+++++.++.+..+.+.
T Consensus        87 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  124 (360)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEeeeecccccccceeccccccccccccccceeeeee
Confidence            89998887  467877777 679999999999887764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.69  E-value=0.00032  Score=48.95  Aligned_cols=104  Identities=13%  Similarity=0.054  Sum_probs=71.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCC--CEEEEEEeC--CEEEEEe-cCCcEEEEEcCCCCCCCCCCceE
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKD--SVLNIVHVQ--GRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT   76 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~--~V~~i~~~~--~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~   76 (121)
                      ++....+..|+.++.|+||++..  .+.++++++|.  .+.++....  .++||+. .+|.|.+|        |+...+.
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t--~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~--------d~~t~~~   74 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVAS--DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI--------DLDTCKN   74 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTT--TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE--------ETTTTEE
T ss_pred             CCCCcEEEEEcCCCEEEEEECCC--CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEE--------eCccCee
Confidence            45567888999999999999987  57889998873  677888864  4688876 57889887        6666655


Q ss_pred             E---EeCCCC----CceeEeeee--CCEEEEEe-------------CCeEEEEeCCCCcEE
Q psy16019         77 V---TLGLPH----HSVRSLAAV--YNKVWCGY-------------KNKIHVVDPKSLDVI  115 (121)
Q Consensus        77 i---~lg~~~----~pV~~m~~v--~~~lw~~~-------------gn~I~Vi~~~tl~i~  115 (121)
                      +   ..+...    ..+..+.+.  ++.+|++.             .+.+.+++..+.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            3   333211    123344444  57788775             356788887776544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=0.00055  Score=49.10  Aligned_cols=93  Identities=9%  Similarity=0.126  Sum_probs=61.4

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecC-----CCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceE---
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-----DSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHT---   76 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-----~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~---   76 (121)
                      ..+-.|++||.|.+|+..+  .+++.+++.+     +.++++...+ .++.+|..||+|.||        |++..+.   
T Consensus       219 ~~l~s~~~d~~i~iwd~~~--~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw--------d~~~~~~~~~  288 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKS--GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW--------DVTTSKCVQK  288 (325)
T ss_dssp             CEEEEEETTCCEEEEETTT--CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE--------ETTTTEEEEE
T ss_pred             eeccccccccceeeeeecc--ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEE--------ECCCCCEEEE
Confidence            4667799999999999877  4556666432     3456666554 478888999999997        5555444   


Q ss_pred             EEeCCCCCceeEeee--e-CCEEEEEeC-CeEEEEe
Q psy16019         77 VTLGLPHHSVRSLAA--V-YNKVWCGYK-NKIHVVD  108 (121)
Q Consensus        77 i~lg~~~~pV~~m~~--v-~~~lw~~~g-n~I~Vi~  108 (121)
                      +.+......+..+..  . ++.|..|+. +.|+|.|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             EEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            455543333443333  3 467776666 6798886

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=0.0003  Score=51.72  Aligned_cols=106  Identities=10%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             CeEEEEecCCeEEEEECCcccce------------ee-eeEec----CCCEEEEEEeCC-EEEEEecCCcEEEEEcCCCC
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRR------------CL-HSIQL----KDSVLNIVHVQG-RVVCALADGSVAIFRRGPDG   67 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~------------~l-~~~~l----~~~V~~i~~~~~-~v~v~LanG~l~Vy~r~~~g   67 (121)
                      ..+-.++.||.+.+|+......+            .+ .....    ...++|+.+.++ .+++|..||+|.+|+.    
T Consensus       137 ~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~----  212 (393)
T d1sq9a_         137 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISEL----  212 (393)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEET----
T ss_pred             cEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEee----
Confidence            45667888999999986432110            01 11111    135788888754 7778999999999844    


Q ss_pred             CCCCCCceE---EEeC----CCCCceeEeeee--CCEEEEEeCC----eEEEEeCCCCcEEEEEE
Q psy16019         68 QWDLSKYHT---VTLG----LPHHSVRSLAAV--YNKVWCGYKN----KIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        68 ~wd~~~~~~---i~lg----~~~~pV~~m~~v--~~~lw~~~gn----~I~Vi~~~tl~i~~~~~  119 (121)
                          ...+.   +...    ....||+|+...  ++.|..|+.+    .|.+.|.++++..+.++
T Consensus       213 ----~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~  273 (393)
T d1sq9a_         213 ----STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  273 (393)
T ss_dssp             ----TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             ----cccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeec
Confidence                33322   1111    124799999886  4677777653    48999999999888764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=9.3e-05  Score=50.91  Aligned_cols=80  Identities=11%  Similarity=0.093  Sum_probs=57.3

Q ss_pred             CCCCeEEEEecCCeEEEEECCcccceeeeeEec--CCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeC
Q psy16019          3 SVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLG   80 (121)
Q Consensus         3 ~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg   80 (121)
                      ...+.+..|++||.|.+|+...  +++++++..  +.++.++...++.+.+|.+|++..++.+... .-+..++++..+-
T Consensus       261 p~~~~lasg~~Dg~v~vWD~~~--~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~-~~~~~~~~i~~~~  337 (342)
T d1yfqa_         261 PRHKFLYTAGSDGIISCWNLQT--RKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ-TIELNASSIYIIF  337 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTT--TEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSCT-TSCCCCCEEEEEE
T ss_pred             CCccEEEEECCCCEEEEEECCC--CcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCC-CccCCCCeEEEEc
Confidence            4567889999999999999988  677777743  3688999999999999999998776644221 1233444555555


Q ss_pred             CCCCc
Q psy16019         81 LPHHS   85 (121)
Q Consensus        81 ~~~~p   85 (121)
                      ++..|
T Consensus       338 ~~~~p  342 (342)
T d1yfqa_         338 DYENP  342 (342)
T ss_dssp             TCSCC
T ss_pred             CCCCC
Confidence            54444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.53  E-value=0.00036  Score=48.66  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             CCEEEEEEeC-CEEEEEecCCcEEEEEcCCCCCCCCCCceEEEeCCCCCceeEeeee--CCEEEEEeC-CeEEEEeCCCC
Q psy16019         37 DSVLNIVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSL  112 (121)
Q Consensus        37 ~~V~~i~~~~-~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~lg~~~~pV~~m~~v--~~~lw~~~g-n~I~Vi~~~tl  112 (121)
                      ..+.+..... +.-++..+++.+.+|        |..+.+.+..-....++++|++.  ++.|+.|.. +.|.|+|++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~v~v~--------d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         252 ELYFTGLRSPKDPNQIYGVLNRLAKY--------DLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             SCEEEEEECSSCTTEEEEEESEEEEE--------ETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             ceeEEEEEeCCCCEEEEecCCeEEEE--------ECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence            3455554432 222233344567776        67676664322222478888887  588888765 78999999999


Q ss_pred             cEEEEEEe
Q psy16019        113 DVIRPVTI  120 (121)
Q Consensus       113 ~i~~~~~~  120 (121)
                      +..+++++
T Consensus       324 ~~i~~i~~  331 (346)
T d1jmxb_         324 EKVKNIKL  331 (346)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEC
Confidence            99999875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.05  E-value=0.003  Score=44.44  Aligned_cols=104  Identities=13%  Similarity=0.168  Sum_probs=62.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec-----------CC--CEEEEEEeCCEEEEEecCC----------cEEEE
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL-----------KD--SVLNIVHVQGRVVCALADG----------SVAIF   61 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l-----------~~--~V~~i~~~~~~v~v~LanG----------~l~Vy   61 (121)
                      ...+..++.+|.+++++........+.....           |+  ....+......+|++..++          .|.+|
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~  285 (355)
T d2bbkh_         206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  285 (355)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEE
Confidence            3456667889999999987743222222211           11  1122223345666665554          24444


Q ss_pred             EcCCCCCCCCCCceE---EEeCCCCCceeEeeeeC--CE-EEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         62 RRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAVY--NK-VWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        62 ~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v~--~~-lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                              |..+.+.   +..+   ..++++....  +. |+++.+  +.|+|+|++|+++.+++.
T Consensus       286 --------d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         286 --------DAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             --------ETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             --------eCCCCcEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence                    6665544   3443   3567887773  33 666654  789999999999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.35  E-value=0.12  Score=38.40  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             CCCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe------CCEEEE-EecCCcEEEEEcCCCCCCCCCC
Q psy16019          1 MTSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV------QGRVVC-ALADGSVAIFRRGPDGQWDLSK   73 (121)
Q Consensus         1 ~~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~------~~~v~v-~LanG~l~Vy~r~~~g~wd~~~   73 (121)
                      ++..+.+++++++||.|.+|+......+...+++.-.....+...      +.++|| +..++++.+|        |.+.
T Consensus        69 fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~--------d~~t  140 (432)
T d1qksa2          69 LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM--------DGET  140 (432)
T ss_dssp             ECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE--------ETTT
T ss_pred             ECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE--------eCcc
Confidence            367788999999999999999766323344555543334444443      346776 4557899998        4444


Q ss_pred             ceEE---EeCC---------CCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCcEEE
Q psy16019         74 YHTV---TLGL---------PHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIR  116 (121)
Q Consensus        74 ~~~i---~lg~---------~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~  116 (121)
                      .+.+   ....         +......+...  +..++++..  ++|.++|..+.+..+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence            3332   2111         11112222222  456666655  689999998877554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.11  E-value=0.12  Score=36.12  Aligned_cols=109  Identities=8%  Similarity=-0.034  Sum_probs=57.1

Q ss_pred             EecCCeEEEEECCcccceeeeeEecC-CCEE------------EEEEeCCEEEEEecCCcEEEEEcCCC--CCCCCCCce
Q psy16019         11 GSQNGSVFVHSAVSQWRRCLHSIQLK-DSVL------------NIVHVQGRVVCALADGSVAIFRRGPD--GQWDLSKYH   75 (121)
Q Consensus        11 Gt~~g~I~v~~~~~~~~~~l~~~~l~-~~V~------------~i~~~~~~v~v~LanG~l~Vy~r~~~--g~wd~~~~~   75 (121)
                      .+.++.+++++............... ..+.            .......++|+...++...+.....+  ..||....+
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~  309 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ  309 (373)
T ss_pred             ecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc
Confidence            34678888888776422222222211 1111            11122334555555544433322211  135666665


Q ss_pred             EEEeCCCCCceeEeeee--CCEE-EEE-eC-CeEEEEeCCCCcEEEEEE
Q psy16019         76 TVTLGLPHHSVRSLAAV--YNKV-WCG-YK-NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v--~~~l-w~~-~g-n~I~Vi~~~tl~i~~~~~  119 (121)
                      .+..-....++..|.+.  ++.+ ++. ++ +.|+|+|..|++..+++.
T Consensus       310 ~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         310 TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            53221223567788776  3454 443 33 689999999999999874

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.06  E-value=0.13  Score=35.98  Aligned_cols=104  Identities=10%  Similarity=-0.037  Sum_probs=62.5

Q ss_pred             EecCCeEEEEECCcccceeeeeEecCC-CEEEEEEeCCEEEEEecCCcEEEEEcCCCC---CCCCCCceEEEeCCCCCce
Q psy16019         11 GSQNGSVFVHSAVSQWRRCLHSIQLKD-SVLNIVHVQGRVVCALADGSVAIFRRGPDG---QWDLSKYHTVTLGLPHHSV   86 (121)
Q Consensus        11 Gt~~g~I~v~~~~~~~~~~l~~~~l~~-~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g---~wd~~~~~~i~lg~~~~pV   86 (121)
                      |+.++.|.||++..  .+.+..+..|. ...........+...-.+..+.++....++   .|+....+.+....  .| 
T Consensus        93 ~~~~~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~-  167 (373)
T d2madh_          93 GKRTDYVEVFDPVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS--SP-  167 (373)
T ss_pred             cccceEEEEEECCC--CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec--cc-
Confidence            45678899999887  56777787774 444444444444444444445555544332   35666665554433  22 


Q ss_pred             eEeeee--CCEEEEEeC--CeEEEEeCCCCcEEEEEE
Q psy16019         87 RSLAAV--YNKVWCGYK--NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        87 ~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~i~~~~~  119 (121)
                      .++...  ++.++++..  +++.+++..+.++.+.+.
T Consensus       168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence            343333  566665443  689999999988877653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.92  E-value=0.12  Score=35.32  Aligned_cols=105  Identities=9%  Similarity=-0.008  Sum_probs=64.4

Q ss_pred             CCCCeEEEEe-cCC-eEEEEECCcccceeeeeEecCCCEEEEEEeC--CEEEEEecCCcEEEEEcCCCCCCCCCCceEEE
Q psy16019          3 SVLPTMWLGS-QNG-SVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVT   78 (121)
Q Consensus         3 ~~~~tvwiGt-~~g-~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~--~~v~v~LanG~l~Vy~r~~~g~wd~~~~~~i~   78 (121)
                      .....+..++ .+| .|++|+...  .+.......+..|.++.+..  .++..+..++.+.+|......     ....+.
T Consensus        52 pDg~~l~~~~~~~g~~v~v~d~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-----~~~~~~  124 (360)
T d1k32a3          52 GDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-----PTVIER  124 (360)
T ss_dssp             SSSEEEEEEEETTEEEEEEEETTT--CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEECCC--CcEEEeeCCCceEEeeeecccccccceeccccccccccccccc-----eeeeee
Confidence            3445555544 444 688999876  33333335668999999874  478888999999887443211     112233


Q ss_pred             eCCCCCceeEeeee--CCEEEEEe----------C-CeEEEEeCCCCcEEE
Q psy16019         79 LGLPHHSVRSLAAV--YNKVWCGY----------K-NKIHVVDPKSLDVIR  116 (121)
Q Consensus        79 lg~~~~pV~~m~~v--~~~lw~~~----------g-n~I~Vi~~~tl~i~~  116 (121)
                      ...  .+++++...  ++.|.++.          + ..+++.|..+.+...
T Consensus       125 ~~~--~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3         125 SRE--AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             CSS--SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccc--ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            333  677777766  45555432          1 358888988876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.16  Score=34.48  Aligned_cols=107  Identities=12%  Similarity=0.057  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEec-CCeEEEEECCcccc--eeeeeEecCCCEEEEEEeC--CEEEEEec-CCcEEEEEcCCCCCCCCCCce
Q psy16019          2 TSVLPTMWLGSQ-NGSVFVHSAVSQWR--RCLHSIQLKDSVLNIVHVQ--GRVVCALA-DGSVAIFRRGPDGQWDLSKYH   75 (121)
Q Consensus         2 ~~~~~tvwiGt~-~g~I~v~~~~~~~~--~~l~~~~l~~~V~~i~~~~--~~v~v~La-nG~l~Vy~r~~~g~wd~~~~~   75 (121)
                      +.....|+++.. ++.|.+|+......  +..........+..|...+  .++|++.. ++++.+|......     ...
T Consensus        45 spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-----~~~  119 (333)
T d1ri6a_          45 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-----PVG  119 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-----EEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccccc-----cee
Confidence            456678888775 89999999765322  2233445556677777764  47999985 5678888543221     112


Q ss_pred             EEEeCCCCCceeEeeee--CCEEEEEeC--CeEEEEeCCCCc
Q psy16019         76 TVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSLD  113 (121)
Q Consensus        76 ~i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I~Vi~~~tl~  113 (121)
                      ..........++++.+.  ++.++.++.  +.|.+++..+..
T Consensus       120 ~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_         120 VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            23333323455666555  466776664  578888876643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.59  E-value=0.039  Score=42.70  Aligned_cols=102  Identities=22%  Similarity=0.209  Sum_probs=67.9

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEec--CC-------------------------------CEEEEEEeCCEEEEEe-
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQL--KD-------------------------------SVLNIVHVQGRVVCAL-   53 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~-------------------------------~V~~i~~~~~~v~v~L-   53 (121)
                      .|-|.++|.+.||++.+  .+.++++..  |+                               +-+...+.+.++||+- 
T Consensus        14 f~Sgg~sG~V~V~dlpS--~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPS--MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETT--TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCC--CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            46788999999999877  455666533  11                               1122346677899985 


Q ss_pred             cCCcEEEEEcCCCCCCCCCCceE---EEeCCCCCceeEeeee--CCEEEEEeC--CeE------------------EEEe
Q psy16019         54 ADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV--YNKVWCGYK--NKI------------------HVVD  108 (121)
Q Consensus        54 anG~l~Vy~r~~~g~wd~~~~~~---i~lg~~~~pV~~m~~v--~~~lw~~~g--n~I------------------~Vi~  108 (121)
                      +|+.|+++        |++..++   +.+.. ....+.+.+.  ++.+|+.++  +.+                  .++|
T Consensus        92 ~~~rVavI--------Dl~t~k~~~ii~iP~-g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD  162 (441)
T d1qnia2          92 ANTRVARI--------RLDIMKTDKITHIPN-VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID  162 (441)
T ss_dssp             TTTEEEEE--------ETTTTEEEEEEECTT-CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred             CCCEEEEE--------ECCCCcEeeEEecCC-CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeec
Confidence            88899998        6666654   44532 2455666665  576665543  554                  5699


Q ss_pred             CCCCcEEEEEEe
Q psy16019        109 PKSLDVIRPVTI  120 (121)
Q Consensus       109 ~~tl~i~~~~~~  120 (121)
                      ++|+++..++.+
T Consensus       163 ~~t~~v~~qI~v  174 (441)
T d1qnia2         163 AETMDVAWQVIV  174 (441)
T ss_dssp             TTTCSEEEEEEE
T ss_pred             CccceeeEEEec
Confidence            999999887764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.41  E-value=0.13  Score=40.31  Aligned_cols=108  Identities=13%  Similarity=0.220  Sum_probs=70.4

Q ss_pred             CCeEEEEec-CCeEEEEECCcccceeeeeEecCC-----CEE-------EEEEeCCEEEEEecCCcEEEEEcCCCC-CCC
Q psy16019          5 LPTMWLGSQ-NGSVFVHSAVSQWRRCLHSIQLKD-----SVL-------NIVHVQGRVVCALADGSVAIFRRGPDG-QWD   70 (121)
Q Consensus         5 ~~tvwiGt~-~g~I~v~~~~~~~~~~l~~~~l~~-----~V~-------~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd   70 (121)
                      .++|++++. ++.++.+++.+. =+.+++++.+.     ...       .+.+.+++||++..||.|.......+. .|+
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~t-G~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~  140 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDP-GKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCC-CceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhcc
Confidence            468999996 689999997541 15577664321     111       256788999999999998887554432 243


Q ss_pred             CCCceEEEeCCC--CCcee-EeeeeCCEEEEEe-------CCeEEEEeCCCCcEEEEEE
Q psy16019         71 LSKYHTVTLGLP--HHSVR-SLAAVYNKVWCGY-------KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        71 ~~~~~~i~lg~~--~~pV~-~m~~v~~~lw~~~-------gn~I~Vi~~~tl~i~~~~~  119 (121)
                      .      .++++  ...++ .-.+.++.+..+.       .+.|.-+|++|+++.=++.
T Consensus       141 ~------~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         141 V------EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             E------ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             c------cccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            2      23321  11222 1245578888877       4579999999999886654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=95.19  E-value=0.18  Score=36.11  Aligned_cols=70  Identities=7%  Similarity=0.038  Sum_probs=43.3

Q ss_pred             EEEEE-ecCCcEEEEEcCCCCCCCCCCceE-EEeCCC--CCceeEeeee-CCEEEEEe--CCeEEEEeCCCCcEEEEEEe
Q psy16019         48 RVVCA-LADGSVAIFRRGPDGQWDLSKYHT-VTLGLP--HHSVRSLAAV-YNKVWCGY--KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        48 ~v~v~-LanG~l~Vy~r~~~g~wd~~~~~~-i~lg~~--~~pV~~m~~v-~~~lw~~~--gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      .+|++ ..++.|..|....+|.  +.+.++ ..+...  ..| .-|++- ++.||++.  +++|++||+++.+++..+++
T Consensus       189 ~lyv~d~~~~~i~~~d~~~~g~--~~~~~~~~~~~~~~~~~p-dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~  265 (314)
T d1pjxa_         189 QLIVAETPTKKLWSYDIKGPAK--IENKKVWGHIPGTHEGGA-DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC  265 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTE--EEEEEEEEECCCCSSCEE-EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred             EEEEEeecccceEEeeccCccc--cceeeEEEEccccccccc-eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC
Confidence            58887 4567888886544441  222222 233221  122 345554 58899987  48999999999887766653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.16  E-value=0.24  Score=35.00  Aligned_cols=74  Identities=5%  Similarity=-0.053  Sum_probs=46.3

Q ss_pred             CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceE-EEeCCCCCceeEeeee-CCEEEEEe--CCeEEEEeCCCCcEEEEEEe
Q psy16019         46 QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAV-YNKVWCGY--KNKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        46 ~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~-i~lg~~~~pV~~m~~v-~~~lw~~~--gn~I~Vi~~~tl~i~~~~~~  120 (121)
                      ++.+|++- ..+.|..|+-+.++..-...... +.......-...|++- ++.||+|.  +.+|..+|+ ++++.+.+++
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence            44566665 46788889876554433333433 4443322334566664 58999995  578999997 5667676653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.95  E-value=0.29  Score=33.57  Aligned_cols=106  Identities=14%  Similarity=0.030  Sum_probs=65.8

Q ss_pred             CCCCeEEEEe-----cCCeEEEEECCcccceeeeeEecCCCEEEEEEe--CCEEEEEe----------cCCcEEEEEcCC
Q psy16019          3 SVLPTMWLGS-----QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV--QGRVVCAL----------ADGSVAIFRRGP   65 (121)
Q Consensus         3 ~~~~tvwiGt-----~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~--~~~v~v~L----------anG~l~Vy~r~~   65 (121)
                      .....+++..     .+..++|++...  .+.+.+++.... ..+...  +.++|++.          .||.|.+|    
T Consensus        11 pdg~~~~v~~~~~~~~~~~v~v~D~~t--g~~~~~~~~g~~-~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~----   83 (355)
T d2bbkh_          11 PDARRVYVNDPAHFAAVTQQFVIDGEA--GRVIGMIDGGFL-PNPVVADDGSFIAHASTVFSRIARGERTDYVEVF----   83 (355)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTT--TEEEEEEEECSS-CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE----
T ss_pred             CCCCEEEEEecccCCCcCeEEEEECCC--CcEEEEEECCCC-CceEEcCCCCEEEEEeCCCccccccCCCCEEEEE----
Confidence            4455778764     355799999877  466677665421 134444  44677764          36788887    


Q ss_pred             CCCCCCCCceE---EEeCCC-C-----CceeEeee--eCCEEEEEeC---CeEEEEeCCCCcEEEEEEe
Q psy16019         66 DGQWDLSKYHT---VTLGLP-H-----HSVRSLAA--VYNKVWCGYK---NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        66 ~g~wd~~~~~~---i~lg~~-~-----~pV~~m~~--v~~~lw~~~g---n~I~Vi~~~tl~i~~~~~~  120 (121)
                          |+...+.   +.+... .     .| ..+..  .++.++.+..   +.+.+++..+++..+.+++
T Consensus        84 ----D~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d2bbkh_          84 ----DPVTLLPTADIELPDAPRFLVGTYP-WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  147 (355)
T ss_dssp             ----CTTTCCEEEEEEETTCCCCCBSCCG-GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             ----ECCCCCEEEEEecCCcceeecCCCC-ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEec
Confidence                5555543   333321 1     22 22333  3678888764   5799999999998887654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.76  E-value=0.42  Score=33.69  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=39.0

Q ss_pred             CeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEE-eCCEEEEEecCCcEEEEEc
Q psy16019          6 PTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH-VQGRVVCALADGSVAIFRR   63 (121)
Q Consensus         6 ~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~-~~~~v~v~LanG~l~Vy~r   63 (121)
                      ...|+-...++|+-++...   .....+++|..+.+|.. .++.+++|+.+| |..|..
T Consensus        31 ~l~wvDi~~~~I~r~d~~~---g~~~~~~~~~~~~~i~~~~dg~l~va~~~g-l~~~d~   85 (295)
T d2ghsa1          31 TAWWFNILERELHELHLAS---GRKTVHALPFMGSALAKISDSKQLIASDDG-LFLRDT   85 (295)
T ss_dssp             EEEEEEGGGTEEEEEETTT---TEEEEEECSSCEEEEEEEETTEEEEEETTE-EEEEET
T ss_pred             EEEEEECCCCEEEEEECCC---CeEEEEECCCCcEEEEEecCCCEEEEEeCc-cEEeec
Confidence            3456666778888888766   33455688888888886 467899999886 666643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.65  E-value=0.14  Score=36.37  Aligned_cols=102  Identities=12%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             EEEEecCCeEEEEECCcccceeeeeEe-----------cCC--CEEEEEEeCCEEEEEecCCc---------EEEEEcCC
Q psy16019          8 MWLGSQNGSVFVHSAVSQWRRCLHSIQ-----------LKD--SVLNIVHVQGRVVCALADGS---------VAIFRRGP   65 (121)
Q Consensus         8 vwiGt~~g~I~v~~~~~~~~~~l~~~~-----------l~~--~V~~i~~~~~~v~v~LanG~---------l~Vy~r~~   65 (121)
                      ..+.+.+|.+++++........+....           .|+  ..+.+....+.+|++..++.         |.+|    
T Consensus       224 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~----  299 (368)
T d1mdah_         224 MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV----  299 (368)
T ss_dssp             EEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE----
T ss_pred             EEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE----
Confidence            445566777888876553211111111           111  22333334567888766553         5555    


Q ss_pred             CCCCCCCCceEE---EeCCCCCceeEeeee--CC-EEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         66 DGQWDLSKYHTV---TLGLPHHSVRSLAAV--YN-KVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        66 ~g~wd~~~~~~i---~lg~~~~pV~~m~~v--~~-~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                          |....+.+   ..+   .++..+...  ++ .||++.+  +.|+|+|+.|++..+++++
T Consensus       300 ----D~~t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         300 ----TASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ----ESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ----ECCCCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence                55544443   333   356667766  34 3677655  6899999999999998764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.45  E-value=0.1  Score=37.09  Aligned_cols=110  Identities=7%  Similarity=-0.129  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEe-cCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCC-CCCceEEEe
Q psy16019          2 TSVLPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWD-LSKYHTVTL   79 (121)
Q Consensus         2 ~~~~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd-~~~~~~i~l   79 (121)
                      +.....++++. .+|.|.++++.+  ++....+..|....-.-.-+...++...||++.++....++... ......  .
T Consensus       132 SpDGk~l~va~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~--~  207 (368)
T d1mdah_         132 CASSACLLFFLFGSSAAAGLSVPG--ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC--T  207 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETT--TEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS--C
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCC--CcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc--c
Confidence            44566788887 478999999888  67788888886443333445566677789999999765443210 000000  0


Q ss_pred             CCCCCceeEeeee-CCEEEEEeCCeEEEEeCCCCcEE
Q psy16019         80 GLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPKSLDVI  115 (121)
Q Consensus        80 g~~~~pV~~m~~v-~~~lw~~~gn~I~Vi~~~tl~i~  115 (121)
                      ......+...... .+.+....+.++++++..+.++.
T Consensus       208 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~  244 (368)
T d1mdah_         208 GAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGAT  244 (368)
T ss_dssp             TTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCE
T ss_pred             cccccceeecccccCcEEEEecCCCEEEEeecCCceE
Confidence            0000111122222 35666666677777776665543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.21  E-value=0.086  Score=41.21  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC-----------CCE-EEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK-----------DSV-LNIVHVQGRVVCALADGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~-----------~~V-~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~   71 (121)
                      .++|++++.++.|+-+++.+  =+.+++++..           ..+ ..+.+.++++|++..||.|.-+....+. .|..
T Consensus        77 ~g~vyv~t~~~~v~AlDa~T--G~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRT--GNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTT--TEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCC--CCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecc
Confidence            45899999999999999887  3667765421           111 1246778999999999999888665443 2532


Q ss_pred             CC--ceE--EEeCCCCCceeEeeeeCCEEEEEe-------CCeEEEEeCCCCcEEEEEE
Q psy16019         72 SK--YHT--VTLGLPHHSVRSLAAVYNKVWCGY-------KNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 ~~--~~~--i~lg~~~~pV~~m~~v~~~lw~~~-------gn~I~Vi~~~tl~i~~~~~  119 (121)
                      ..  ...  +.+..  .|    .+.++.+..|.       .+.|+.||++|+++.=+|.
T Consensus       155 ~~~~~~~~~~~~~~--~p----~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         155 NTFEGQKGSLTITG--AP----RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             ETTTTCCSSCBCCS--CC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             cCccCCcceEEeec--ce----EEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            11  110  11111  12    33466776653       2479999999999987664

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.15  E-value=0.058  Score=42.23  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=40.1

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE--EEE-eCCEEEEEecCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVH-VQGRVVCALADG   56 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~-~~~~v~v~LanG   56 (121)
                      +++.+.|+.|+.||.++.|++.+  =+.++++++++.+..  |.| .+++-||+.+-|
T Consensus       485 stagglVF~G~~dg~l~A~Da~T--Ge~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         485 TTAGNVVFQGTADGRLVAYHAAT--GEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG  540 (573)
T ss_dssp             EETTTEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EEcCCEEEEECCCCeEEEEECCC--CcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            45678999999999999999988  478999999864333  333 577777665544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.62  E-value=0.051  Score=42.72  Aligned_cols=53  Identities=9%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE--EEE-eCCEEEEEecCC
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVH-VQGRVVCALADG   56 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~-~~~~v~v~LanG   56 (121)
                      ++..+.|+.|+.||.++.|+..+  =|.++++++++.+..  |.| .+++.||+.+.|
T Consensus       472 ~TagglVf~G~~dg~l~A~Da~t--Ge~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         472 YTKGGLVWYATLDGYLKALDNKD--GKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             EecCCEEEEECCCCeEEEEECCC--CcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence            45678899999999999999987  488999999965443  444 488999877665

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.47  E-value=0.42  Score=37.16  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=66.6

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEec--CC---C---EE--EEEEeCCEEEEEecCCcEEEEEcCCCC-CCCCC-
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQL--KD---S---VL--NIVHVQGRVVCALADGSVAIFRRGPDG-QWDLS-   72 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l--~~---~---V~--~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~~-   72 (121)
                      .++|++++.+|.|+-+++.+-  +.++++..  |+   +   ..  .+.+.++++|++..||.|..+....+. .|+.. 
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG--~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTG--KRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSC--CEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEeCCCCeEEEEeCCCC--CeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccceeeeecc
Confidence            458999999999999998873  66777643  21   1   11  245778999999999999988766543 35321 


Q ss_pred             -CceEEEeCCCCCcee--------EeeeeCCEEE-EEeCCeEEEEeCCCCcEEEEEE
Q psy16019         73 -KYHTVTLGLPHHSVR--------SLAAVYNKVW-CGYKNKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        73 -~~~~i~lg~~~~pV~--------~m~~v~~~lw-~~~gn~I~Vi~~~tl~i~~~~~  119 (121)
                       ++....... ..|+.        -+.+.+..-. ++....|+-+|++|+++.=+|+
T Consensus       146 ~~~~~~~~~~-~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         146 ADHGAGYTMT-GAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             SCGGGTCBCC-SCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             cCCCccceee-cCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence             110000000 12211        1111111110 1234679999999999887664

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.43  E-value=0.14  Score=39.83  Aligned_cols=51  Identities=16%  Similarity=0.294  Sum_probs=38.6

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE--EEE-eCCEEEEEec
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVH-VQGRVVCALA   54 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~-~~~~v~v~La   54 (121)
                      ++..+.|+.|+.||.++.|++.+  =+.++++++|+.+..  |.| .+++-||+.+
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~t--Ge~LW~~~l~~~~~~~P~ty~~dGkqyv~v~  519 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADK--GEALWQFEAQSGIVAAPMTFELAGRQYVAIM  519 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCEEEEECCCCcEEEEECCC--CcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            45678899999999999999988  488999999864332  333 5677666543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.27  E-value=0.97  Score=32.54  Aligned_cols=62  Identities=5%  Similarity=-0.035  Sum_probs=37.8

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEe------CCEEEEEe-cCCcEEEEEc
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHV------QGRVVCAL-ADGSVAIFRR   63 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~------~~~v~v~L-anG~l~Vy~r   63 (121)
                      ++....++++.+||.|.+|+...........++.......+.+.      +.++|++. .++++.++..
T Consensus        70 SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          70 SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC
Confidence            56778999999999999999876322233344433223333332      34566655 5566666643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.87  E-value=0.8  Score=35.35  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             CCeEEEEecCCeEEEEECCcccceeeeeEecC--C----------CEEEEEEeCCEEEEEecCCcEEEEEcCCCC-CCCC
Q psy16019          5 LPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLK--D----------SVLNIVHVQGRVVCALADGSVAIFRRGPDG-QWDL   71 (121)
Q Consensus         5 ~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~--~----------~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g-~wd~   71 (121)
                      .++|+++|.+|.|+-+++.+-  +.+++++..  .          .-..+.+.+++||++..||.|..+....+. .|+.
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG--~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASG--KELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCC--CEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence            468999999999999998873  566765311  0          111245668899999999999998765543 2432


Q ss_pred             CCceEEEeCCCCC--cee-EeeeeCCEEEEEeC-------CeEEEEeCCCCcEEEEEE
Q psy16019         72 SKYHTVTLGLPHH--SVR-SLAAVYNKVWCGYK-------NKIHVVDPKSLDVIRPVT  119 (121)
Q Consensus        72 ~~~~~i~lg~~~~--pV~-~m~~v~~~lw~~~g-------n~I~Vi~~~tl~i~~~~~  119 (121)
                            ...++..  .++ .-.+.++.+..+..       ..|.-+|++|+++.=+|.
T Consensus       144 ------~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         144 ------QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             ------ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ------CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence                  2222111  111 11234566665432       469999999999987765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.75  E-value=0.15  Score=39.87  Aligned_cols=51  Identities=16%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE--EEE-eCCEEEEEec
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVH-VQGRVVCALA   54 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~-~~~~v~v~La   54 (121)
                      +++.+.|+.|+.||.++.|+...  =|+|+++++|.++..  |.| .+++-||+.+
T Consensus       494 stagglVF~Gt~dg~l~A~Da~T--Ge~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKS--GKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCC--CcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            45677999999999999999888  488999999863322  333 5666666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.84  E-value=1.1  Score=31.50  Aligned_cols=78  Identities=10%  Similarity=-0.037  Sum_probs=45.5

Q ss_pred             EEEEe--CCEEEEEe-cCCcEEEEEcCCCCCCCCCCceE--EEeCCCCCceeEeeee-CCEEEEEeC--CeEEEEeCCCC
Q psy16019         41 NIVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHT--VTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKSL  112 (121)
Q Consensus        41 ~i~~~--~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~~~--i~lg~~~~pV~~m~~v-~~~lw~~~g--n~I~Vi~~~tl  112 (121)
                      -|.+.  ++.+|++- .++.|..|.-+.++.--......  ...+....| --|++- ++.||++..  ++|.+||+ ++
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P-dGl~vD~~G~l~Va~~~~g~V~~~~p-~G  258 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP-DSCCIDSDDNLYVAMYGQGRVLVFNK-RG  258 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE-EEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccce-eeeeEcCCCCEEEEEcCCCEEEEECC-CC
Confidence            35554  44688885 56889999766554211000111  122221123 245554 578999863  79999997 57


Q ss_pred             cEEEEEEe
Q psy16019        113 DVIRPVTI  120 (121)
Q Consensus       113 ~i~~~~~~  120 (121)
                      ++..++++
T Consensus       259 ~~l~~i~~  266 (319)
T d2dg1a1         259 YPIGQILI  266 (319)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEeC
Confidence            88777754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.71  E-value=0.23  Score=36.37  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=61.6

Q ss_pred             ecCCeEEEEECCcccceee-e--eE-ecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCC---CCCCCCceEEEeCCCCC
Q psy16019         12 SQNGSVFVHSAVSQWRRCL-H--SI-QLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDG---QWDLSKYHTVTLGLPHH   84 (121)
Q Consensus        12 t~~g~I~v~~~~~~~~~~l-~--~~-~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g---~wd~~~~~~i~lg~~~~   84 (121)
                      .++|.|++++.....++.+ .  ++ ....+|.+.....+.=+++.+.+...+|++...+   .||++.....++...+.
T Consensus        33 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~  112 (470)
T d2bgra1          33 KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPN  112 (470)
T ss_dssp             ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCT
T ss_pred             EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCc
Confidence            5788999999887422221 1  22 1235788877765432323222222222222222   24666666655554446


Q ss_pred             ceeEeeee--CCEEEEEeCCeEEEEeCCCCcEEE
Q psy16019         85 SVRSLAAV--YNKVWCGYKNKIHVVDPKSLDVIR  116 (121)
Q Consensus        85 pV~~m~~v--~~~lw~~~gn~I~Vi~~~tl~i~~  116 (121)
                      .+......  ++.+.....+.+++.+..+++..+
T Consensus       113 ~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1         113 NTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             TEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE
T ss_pred             cccccccccCcceeeEeecccceEEECCCCceee
Confidence            66655544  688888889999999999987654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.57  E-value=0.14  Score=40.41  Aligned_cols=51  Identities=10%  Similarity=0.197  Sum_probs=38.3

Q ss_pred             CCCCCeEEEEecCCeEEEEECCcccceeeeeEecCCCEEE--EEE-eCCEEEEEec
Q psy16019          2 TSVLPTMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLN--IVH-VQGRVVCALA   54 (121)
Q Consensus         2 ~~~~~tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~--i~~-~~~~v~v~La   54 (121)
                      +++.+.|+.|+.||.++.|++.+  =+.+++++++..+..  |.| .+++-||+.+
T Consensus       481 sTagglVF~G~~Dg~l~A~Da~T--Ge~LW~~~~~~~~~a~P~tY~~dGkQYvav~  534 (596)
T d1w6sa_         481 ATAGDLVFYGTLDGYLKARDSDT--GDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY  534 (596)
T ss_dssp             EETTTEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCC--CcEeeEEECCCCcccCCeEEEECCEEEEEEE
Confidence            56678899999999999999998  488999999853322  222 4677666643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.81  E-value=1.7  Score=30.04  Aligned_cols=94  Identities=11%  Similarity=0.061  Sum_probs=55.5

Q ss_pred             CCeEEEEECCcccceeeeeEecCCCEEEEEE--eCCEEEEEe-cCCcEEEEEcCCCCCCCCCCc--eEEEeCCCCCceeE
Q psy16019         14 NGSVFVHSAVSQWRRCLHSIQLKDSVLNIVH--VQGRVVCAL-ADGSVAIFRRGPDGQWDLSKY--HTVTLGLPHHSVRS   88 (121)
Q Consensus        14 ~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~--~~~~v~v~L-anG~l~Vy~r~~~g~wd~~~~--~~i~lg~~~~pV~~   88 (121)
                      .++|+-.++...-++.+..-.+ .....|..  ..+++|++- ..+.|..+        |++..  +.+--+. ++|. .
T Consensus       145 ~~~I~r~~~dG~~~~~i~~~~~-~~P~glaiD~~~~~lYw~d~~~~~I~~~--------~~~g~~~~~v~~~~-~~P~-~  213 (263)
T d1npea_         145 NPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAGTHRAECL--------NPAQPGRRKVLEGL-QYPF-A  213 (263)
T ss_dssp             SCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETTTTEEEEE--------ETTEEEEEEEEECC-CSEE-E
T ss_pred             CcEEEEecCCCCCceeeeeecc-cccceEEEeecCcEEEEEeCCCCEEEEE--------ECCCCCeEEEECCC-CCcE-E
Confidence            3446555655422222211111 23345554  478899885 45677666        33333  2332232 3675 7


Q ss_pred             eeeeCCEEEEEeC--CeEEEEeCCCCcEEEEE
Q psy16019         89 LAAVYNKVWCGYK--NKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        89 m~~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~  118 (121)
                      |++-++.||.+..  ++|+.+|..+++..+.+
T Consensus       214 lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         214 VTSYGKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEECCEEEEEECCCCEEEEEECCCCccceEE
Confidence            8888999988754  79999999998877654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=90.60  E-value=0.75  Score=35.15  Aligned_cols=37  Identities=11%  Similarity=0.077  Sum_probs=28.6

Q ss_pred             CceeEee---eeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         84 HSVRSLA---AVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        84 ~pV~~m~---~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                      .|-.+..   +-++.||++..  ++|.+||++|++..+.+++
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i  112 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI  112 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec
Confidence            4544443   45788999876  7999999999999987764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=89.36  E-value=1  Score=31.85  Aligned_cols=61  Identities=10%  Similarity=0.076  Sum_probs=45.3

Q ss_pred             CCeEEEEe-cCCeEEEEECCcccceeeeeEecC-CCEEEEEEeCC--EEEEEec-CCcEEEEEcCCCC
Q psy16019          5 LPTMWLGS-QNGSVFVHSAVSQWRRCLHSIQLK-DSVLNIVHVQG--RVVCALA-DGSVAIFRRGPDG   67 (121)
Q Consensus         5 ~~tvwiGt-~~g~I~v~~~~~~~~~~l~~~~l~-~~V~~i~~~~~--~v~v~La-nG~l~Vy~r~~~g   67 (121)
                      .+.||++. ..|.|++|+...  .+.+..+.+| ..++++.+..+  .+||..+ +|.|..|+-...|
T Consensus       236 ~GnlyVa~~~~g~I~~~dp~~--g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         236 DNNLLVANWGSSHIEVFGPDG--GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             TCCEEEEEETTTEEEEECTTC--BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             CCcEEEEEcCCCEEEEEeCCC--CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            45799987 578999998765  3456678888 57888888643  6999875 4888888655544

>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Hepatocyte growth factor receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.48  Score=36.31  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             CCceeEeeeeCCEEEEEeCCeEEEEeCCCCcEEEEE
Q psy16019         83 HHSVRSLAAVYNKVWCGYKNKIHVVDPKSLDVIRPV  118 (121)
Q Consensus        83 ~~pV~~m~~v~~~lw~~~gn~I~Vi~~~tl~i~~~~  118 (121)
                      ..||.-|+..++.||+|..|.|+.+|..+++.+++.
T Consensus        10 ~~~iq~i~~~~~~vyVGArn~iy~L~~~dL~~~~~~   45 (476)
T d1shyb1          10 ETPIQNVILHEHHIFLGATNYIYVLNEEDLQKVAEY   45 (476)
T ss_dssp             SSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             CCCceEEEEECCEEEEEeeeeEEEeccccCcceeEE
Confidence            379999999999999999999999999999887764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.92  E-value=2.9  Score=29.82  Aligned_cols=114  Identities=11%  Similarity=-0.007  Sum_probs=63.3

Q ss_pred             CCCCeEEEEec-CCeEEEEECCcccce---eeeeEecCC---------------CEEEEEEe--CCEEEEEec------C
Q psy16019          3 SVLPTMWLGSQ-NGSVFVHSAVSQWRR---CLHSIQLKD---------------SVLNIVHV--QGRVVCALA------D   55 (121)
Q Consensus         3 ~~~~tvwiGt~-~g~I~v~~~~~~~~~---~l~~~~l~~---------------~V~~i~~~--~~~v~v~La------n   55 (121)
                      ...+.+|+..| ++.|.+|+.......   ...++.+-.               ....|...  ..++||+..      .
T Consensus       202 pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~  281 (365)
T d1jofa_         202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQ  281 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSC
T ss_pred             CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccc
Confidence            45567877775 788999997653211   223332210               12344443  458999854      2


Q ss_pred             CcEEEEEcCCCCCCCCCCceEE-EeCCC-CCceeEeeee---CCEEEEEeC--CeEEEE--eCCCCcEEEEEE
Q psy16019         56 GSVAIFRRGPDGQWDLSKYHTV-TLGLP-HHSVRSLAAV---YNKVWCGYK--NKIHVV--DPKSLDVIRPVT  119 (121)
Q Consensus        56 G~l~Vy~r~~~g~wd~~~~~~i-~lg~~-~~pV~~m~~v---~~~lw~~~g--n~I~Vi--~~~tl~i~~~~~  119 (121)
                      +.|+.|+...+|..  .....+ ..... ..| +.|.+.   ++.|+++++  +.|.|+  +.+++....+++
T Consensus       282 ~~i~~~~~~~~g~~--~~~~~~~~~~~~G~~p-~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~  351 (365)
T d1jofa_         282 GYIAGFKLRDCGSI--EKQLFLSPTPTSGGHS-NAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVR  351 (365)
T ss_dssp             CEEEEEEECTTSCE--EEEEEEEECSSCCTTC-CCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEE
T ss_pred             eEEEEEEecCCCce--eeEeEeeEEEcCCCCc-cEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEE
Confidence            45999987765531  111111 11111 144 566654   577988877  788887  556666555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.47  E-value=2.6  Score=28.68  Aligned_cols=97  Identities=15%  Similarity=0.179  Sum_probs=56.1

Q ss_pred             eEEEE-ecCCeEEEEECCcccceeeeeEecC---CCEEEEEEe-CCEEEEEec--CCcEEEEEcCCCCCCCCCCceEEEe
Q psy16019          7 TMWLG-SQNGSVFVHSAVSQWRRCLHSIQLK---DSVLNIVHV-QGRVVCALA--DGSVAIFRRGPDGQWDLSKYHTVTL   79 (121)
Q Consensus         7 tvwiG-t~~g~I~v~~~~~~~~~~l~~~~l~---~~V~~i~~~-~~~v~v~La--nG~l~Vy~r~~~g~wd~~~~~~i~l   79 (121)
                      .+|+. ...+.|++|+...   +.+.++..+   .....|... ++.+||+-.  ++.|.+|.+  +|.+    ...+.-
T Consensus       169 ~i~v~d~~~~~V~~~d~~G---~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~--~G~~----~~~~~~  239 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ--DGQL----ISALES  239 (279)
T ss_dssp             EEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT--TSCE----EEEEEE
T ss_pred             eEEeeeccccceeeeecCC---ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC--CCCE----EEEEeC
Confidence            45544 4577888888766   334444332   245666663 557999864  456999953  2321    112222


Q ss_pred             CC-CCCceeEeeee-CCEEEEEeC-CeEEEEeCCCCc
Q psy16019         80 GL-PHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKSLD  113 (121)
Q Consensus        80 g~-~~~pV~~m~~v-~~~lw~~~g-n~I~Vi~~~tl~  113 (121)
                      +. ...| +.+++. ++.|+++.+ ++|.++.-.++.
T Consensus       240 ~~~~~~p-~~vav~~dG~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         240 KVKHAQC-FDVALMDDGSVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             SSCCSCE-EEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             CCCCCCE-eEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence            22 1233 345555 478999888 479998766553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.65  E-value=0.77  Score=35.51  Aligned_cols=87  Identities=18%  Similarity=0.223  Sum_probs=54.9

Q ss_pred             eEEEEecCCeEEEEECCcccceeeeeEecCCCEEEEEEeCCEEEEEecCCcEEEEEcCCCCCCCCCCc------------
Q psy16019          7 TMWLGSQNGSVFVHSAVSQWRRCLHSIQLKDSVLNIVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY------------   74 (121)
Q Consensus         7 tvwiGt~~g~I~v~~~~~~~~~~l~~~~l~~~V~~i~~~~~~v~v~LanG~l~Vy~r~~~g~wd~~~~------------   74 (121)
                      -.|-|.++|.+.||.+.+  .+.++.|.                         ||.+.....|-+.+-            
T Consensus        15 ~f~SgG~sG~v~v~G~PS--mR~l~~ip-------------------------vF~~~~~~G~G~~~es~~il~~~~~~~   67 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPS--MRELMRVP-------------------------VFNRCSATGWGQTNESVRIHERTMSER   67 (459)
T ss_dssp             EEECCBTTCEEEEEEETT--CCEEEEEE-------------------------SSSCCTTTCTTTBHHHHHHHHTTCC--
T ss_pred             EEeeCCccceEEEEecCC--cceEEEee-------------------------eecCCCCcccCcchhHHHHhhcccChh
Confidence            357889999999999988  35566543                         333333333333221            


Q ss_pred             --e--------EEEeCCCCCceeEee---eeCCEEEEEeC--CeEEEEeCCCCcEEEEEEe
Q psy16019         75 --H--------TVTLGLPHHSVRSLA---AVYNKVWCGYK--NKIHVVDPKSLDVIRPVTI  120 (121)
Q Consensus        75 --~--------~i~lg~~~~pV~~m~---~v~~~lw~~~g--n~I~Vi~~~tl~i~~~~~~  120 (121)
                        +        ...-||.++|--+..   .-++-||+...  ++|.+||+.+++..+-.++
T Consensus        68 t~~~l~~~g~~~~~~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i  128 (459)
T d1fwxa2          68 TKKFLAANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI  128 (459)
T ss_dssp             ------------CCCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             hhhhhhccCcccccCCCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEec
Confidence              1        112456666733332   23577999888  6999999999999886654