Psyllid ID: psy16040

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MLTKAQLVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTQNSSVLTPKPVTKLSLKELFDTSILWAVPKKVEDAHAENRPDSLQHMCKMIDVSSDQVPNAMFSNSSLFFISDFNVAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccHHHccccccccccccEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEcccccccccccccHHHHHHccccEEccccHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccEEccccccccccccccccHHHHHcccEEEEccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccEEEEEcccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcHEEHHHHHHHHccccccccEEEEcEEEEEEHcHHHHHHEEEEEEcccEEEEEccccccccccccEccHHHHHccHHHHEcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccccHHHHHcccEEEEcccccccHHHHHHcccccccccEEEcEEccccccccccccccccccccccEEEcccccEEcccccccccEcccccccccccEEEEccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccHHHccccEEEEcccccccHccHHHHcccccccccccc
Coil and Loop (DISEMBL)
MLTKAQLVLSKLKYGVLSLEHTLActlgfqppppievtsmevcyqrnWHKQAVTSVIIGLDFNVAvtqnssvltpkpvtkLSLKELFdtsilwavpkkvedahaenrpdsLQHMCKMIdvssdqvpnamfsnsslffISDFNVAVTQissvltpkpvtklSLKELFDTSILWAVPKKRRSLERrmnrkygskdQVWKmlmprtdltvcntcgythhsktlcgkyyslsisrvkcsfpsllkvmypyglttnlekdkyqscdiviQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEalglnpvdkEVVVLYKGekehaseefsETHRVIevegerppwfsknllqkttqkpsdstd
Flexible Loop (DISEMBL)
MLTKAQLVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTqnssvltpkpvtklSLKELFDTSILWAVPKKVEDAHAENRPDSLQHMCKMIDVSSDQVPNAMFSNSSLFFISDFNVAVTQISsvltpkpvtklslkelfdtsilwavpkkrrslerrmnrkygskdqvwkmlmpRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKivealglnpvdkEVVVLYKGEkehaseefsethrvievegerppwfsknllqkttqkpsdstd
Low Complexity Region (SEG)
MLTKAQLVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTQNSSVLTPKPVTKLSLKELFDTSILWAVPKKVEDAHAENRPDSLQHMCKMIDVSSDQVPNAMFSNSSLFFISDFNVAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD
Disordered region (IsUnstruct)
*****QLVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTQNSSVLTPKPVTKLSLKELFDTSILWAVPKKV**************MCKMIDV****VPNAMFSNSSLFFISDFNVAVTQISSVLTPKPVTKLSLKELFDTSILWAVPK************YGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKG*******************************************
Disordered Region (DISOPRED)
******LVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTQNSSVLTPKPVTKLSLKELFDTSILWAVPKKV************QHMCKMIDVSSDQVPNAMFSNSSLFFISDFNV*********************LFDTSILWAVPKKRRSLER**NRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPS***********TNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQD*******LNPVDKEVVVLYKGEKE*************EVEGERPPWFS****************
Disordered Region (DISEMBL)
MLTKAQLVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTQNSSVLTPKPVTKLSLKELFDTSILWAVPKKVEDAHAENRPDSLQHMCKMIDVSSDQVPNAMFSNSSLFFISDFNVAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGE***********HRVIEVEGERPPWFSKNLL************
Disordered Region (DISPRO)
MLTKAQLVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTQNSSVLTPKPVTKLSLKELFDTSILWAVPKKVEDAHAENRPDSLQHMCKMIDVSSDQVPNAMFSNSSLFFISDFNVAVTQISSV*****VTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPPWFSKNLLQ***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTKAQLVLSKLKYGVLSLEHTLACTLGFQPPPPIEVTSMEVCYQRNWHKQAVTSVIIGLDFNVAVTQNSSVLTPKPVTKLSLKELFDTSILWAVPKKVEDAHAENRPDSLQHMCKMIDVSSDQVPNAMFSNSSLFFISDFNVAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q9V9Z1	195	39S ribosomal protein L32	yes	N/A	0.444	0.815	0.319	9e-25
Q04907	168	Probable 39S ribosomal pr	yes	N/A	0.357	0.761	0.256	5e-07
Q2TBI6	188	39S ribosomal protein L32	yes	N/A	0.184	0.351	0.352	0.0005
Q9DCI9	187	39S ribosomal protein L32	yes	N/A	0.184	0.352	0.338	0.0008

>sp|Q9V9Z1|RM32_DROME 39S ribosomal protein L32, mitochondrial OS=Drosophila melanogaster GN=mRpL32 PE=2 SV=1

 Score =  114 bits (286), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 57/216 (26%)

Query: 143 VAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPR 202
           +A+       +PK   + SLK+L    +LWAVPK RRS+E+R+ RK+G  +  WK L  +
Sbjct: 30  LALAGFQHDHSPKSSQEFSLKQLIGDGLLWAVPKHRRSVEKRLKRKFGYPEYNWKPLREK 89

Query: 203 TDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDI 262
            +L  C                       ++C     + V+ P+                
Sbjct: 90  RNLRSC-----------------------LQCGHDHEMGVLCPF---------------- 110

Query: 263 VIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASE 322
                             CY K+ +ET  +Q KI E LGL+PVDKEV+VLY+GEK   S 
Sbjct: 111 ------------------CYQKVLKETELMQSKIQETLGLDPVDKEVIVLYEGEKAEQST 152

Query: 323 EFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD 358
           +  +  R++E++  RP WF+KNLLQK+TQ+ S++ +
Sbjct: 153 DDLKNKRIVEMKKPRPMWFTKNLLQKSTQQLSETKE 188

Drosophila melanogaster (taxid: 7227)

>sp|Q04907|RM32_CAEEL Probable 39S ribosomal protein L32, mitochondrial OS=Caenorhabditis elegans GN=C30C11.1 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 71/199 (35%)

Query: 156 PVTKLSLKELFDT-SILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYT 214
           P+T  S++E+ D  SI++ VPK R S  +++ RK+       ++L P  +L  C  C   
Sbjct: 35  PMTYGSVREMIDDFSIVFGVPKYRTSKPKKVTRKFS----FTRLLQPIDNLVTCPACSNI 90

Query: 215 HHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTIL 274
           H S T+                                       CD             
Sbjct: 91  HPSDTI---------------------------------------CDA------------ 99

Query: 275 FLFTGNCYAKIKEETTRLQDKIVEALGLNPV-----DKEVVVLYKGEKEHASEEFSETHR 329
                 CYAK+ + T+ ++ K+++    NP      DKEV V ++GE + A     +  R
Sbjct: 100 ------CYAKVHQLTSEIKKKMMQ---YNPYVGEKQDKEVYVKFRGEPD-APAAVVKGKR 149

Query: 330 VIEVEGERPPWFSKNLLQK 348
           V+E+E ERP WF K  L++
Sbjct: 150 VLEIEKERPTWFKKLTLKE 168

Caenorhabditis elegans (taxid: 6239)

>sp|Q2TBI6|RM32_BOVIN 39S ribosomal protein L32, mitochondrial OS=Bos taurus GN=MRPL32 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 276 LFTGNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEV 333
           +  G CY K+++ET  ++ +I +  G        E VVLY GE      E  +  R+IE 
Sbjct: 121 VLCGYCYEKVRKETAEIRRQIGKQEGGPFKAPTVETVVLYSGE---TPSEHDQGKRIIER 177

Query: 334 EGERPPWFSKN 344
           E +RP WF++N
Sbjct: 178 ERKRPSWFTQN 188

Bos taurus (taxid: 9913)

>sp|Q9DCI9|RM32_MOUSE 39S ribosomal protein L32, mitochondrial OS=Mus musculus GN=Mrpl32 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 276 LFTGNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEV 333
           +  G CY K+++ETT+++ +I    G        E +VLY GEK     E  +  R++E 
Sbjct: 120 VLCGYCYEKVRQETTKIRQQIGAQEGGPFRAPSVETMVLYTGEK---PSEKDQGKRIVER 176

Query: 334 EGERPPWFSKN 344
             +RP WF++N
Sbjct: 177 NIKRPSWFTQN 187

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
125773357	198	GA11487 [Drosophila pseudoobscura pseudo	0.410	0.742	0.357	3e-26
332019801	194	39S ribosomal protein L32, mitochondrial	0.393	0.726	0.353	9e-26
357622404	214	mitochondrial ribosomal protein L32 [Dan	0.399	0.668	0.376	1e-25
193702267	200	PREDICTED: 39S ribosomal protein L32, mi	0.441	0.79	0.366	1e-25
195452854	202	GK14166 [Drosophila willistoni] gi|19416	0.396	0.702	0.346	5e-25
389609577	196	mitochondrial ribosomal protein L32 [Pap	0.466	0.852	0.337	9e-25
148298659	197	mitochondrial ribosomal protein L32 [Bom	0.466	0.847	0.339	2e-24
239789029	200	ACYPI008916 [Acyrthosiphon pisum]	0.441	0.79	0.362	4e-24
170056688	208	39S ribosomal protein L32, mitochondrial	0.396	0.682	0.361	4e-24
195158220	199	GL13736 [Drosophila persimilis] gi|19411	0.399	0.718	0.35	5e-24

>gi|125773357|ref|XP_001357937.1| GA11487 [Drosophila pseudoobscura pseudoobscura] gi|54637671|gb|EAL27073.1| GA11487 [Drosophila pseudoobscura pseudoobscura]

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 57/204 (27%)

Query: 155 KPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYT 214
           K   + SLKEL    +LWAVPK RRS+E+R+NRK+G  + VWK L  + ++  C TCG+ 
Sbjct: 45  KRAQEFSLKELIGDGMLWAVPKHRRSVEKRLNRKFGYPEYVWKPLKVKRNIRSCQTCGHD 104

Query: 215 HHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTIL 274
           H    LC                       P+                       YN +L
Sbjct: 105 HELGVLC-----------------------PF----------------------CYNKVL 119

Query: 275 FLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVE 334
                       +ET ++Q KI E LGL+PVDKEV+VLY+GEK   + E  +  R++E++
Sbjct: 120 ------------KETEQMQAKIQEKLGLDPVDKEVIVLYEGEKAEQTAEQLQGKRIVEMK 167

Query: 335 GERPPWFSKNLLQKTTQKPSDSTD 358
             RP WF+KNLLQK+TQ+ S++ +
Sbjct: 168 KPRPMWFTKNLLQKSTQQQSEAKE 191

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019801|gb|EGI60262.1| 39S ribosomal protein L32, mitochondrial [Acromyrmex echinatior]

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 57/198 (28%)

Query: 161 SLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTL 220
           SLKE+FD   LWAVPKKRRSL+ R  RK+G K+ VWK  + +T++  C            
Sbjct: 47  SLKEIFDNGFLWAVPKKRRSLDLRYKRKFGVKEYVWKPPIAKTNILSC----------VN 96

Query: 221 CGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGN 280
           CG +Y                                        R C          G+
Sbjct: 97  CGNHYEAG-------------------------------------RLC----------GH 109

Query: 281 CYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPPW 340
           CY K+K ET  +QD I + LGL+PV++ V+VLY GEKE  +++F +  R++E+  +RP W
Sbjct: 110 CYEKVKLETKEMQDAIQKELGLSPVEQNVIVLYDGEKESKTDDFWKNQRIVELPKKRPSW 169

Query: 341 FSKNLLQKTTQKPSDSTD 358
           F +NLL+ T+Q+PS++ D
Sbjct: 170 FHQNLLEPTSQEPSNTKD 187

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622404|gb|EHJ73897.1| mitochondrial ribosomal protein L32 [Danaus plexippus]

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 102/202 (50%), Gaps = 59/202 (29%)

Query: 159 KLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSK 218
           K SL +L     L AVPK RR++E+R  RK+GS D +WKML+P+T++ VC          
Sbjct: 63  KFSLNDLIGDGFLLAVPKFRRTVEKRWKRKFGSPDYIWKMLVPKTNIIVCYE-------- 114

Query: 219 TLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFT 278
             CG Y+                                        R C          
Sbjct: 115 --CGHYHENG-------------------------------------RLC---------- 125

Query: 279 GNCYAKIKEETTRLQDKIVEALGLN-PVDKEVVVLYKGEK-EHASEEFSETHRVIEVEGE 336
           GNCY K++ ET  +Q+KI E LG N P++ +V+VLY G++     +EF +  RVIE++ E
Sbjct: 126 GNCYKKVEAETKEIQEKIQEKLGTNKPIENDVIVLYDGDQLPEKPQEFWQGKRVIEMKKE 185

Query: 337 RPPWFSKNLLQKTTQKPSDSTD 358
           RP WFSKNLLQKTTQ PS+S D
Sbjct: 186 RPKWFSKNLLQKTTQAPSESKD 207

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193702267|ref|XP_001951152.1| PREDICTED: 39S ribosomal protein L32, mitochondrial-like [Acyrthosiphon pisum]

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 60/218 (27%)

Query: 144 AVTQISSVLTPKPVTKL--SLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMP 201
           A++  S   T KP T    +++ LF  SILWAVPK RR++E+R+ RK+G  D  +KMLMP
Sbjct: 33  ALSFASPAETLKPSTPALTNVQRLFGDSILWAVPKHRRTIEKRLKRKFGCIDDFYKMLMP 92

Query: 202 RTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCD 261
           RTDL  CN           CG  Y     R  C                           
Sbjct: 93  RTDLLTCNQ----------CGHSYQ---RRHLCP-------------------------- 113

Query: 262 IVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEK-EHA 320
                             NCY ++K+ETT  Q+ I + LGL P+++EVVVLYKGE+ +  
Sbjct: 114 ------------------NCYKRVKDETTEFQEVIEKELGLEPIEQEVVVLYKGERTKQP 155

Query: 321 SEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD 358
            E      R+IE++ E+P WF +NLLQ+TT   SDS D
Sbjct: 156 VEGHWNGKRIIELKREKPSWFCRNLLQRTTIGNSDSKD 193

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195452854|ref|XP_002073529.1| GK14166 [Drosophila willistoni] gi|194169614|gb|EDW84515.1| GK14166 [Drosophila willistoni]

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 57/199 (28%)

Query: 160 LSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKT 219
            SL EL    +LWAVPK RRS+E+R+NRK+G  +  WK+L  + +L  C           
Sbjct: 54  FSLNELLGNGMLWAVPKHRRSVEKRLNRKFGYPEYTWKLLKEKRNLRSC----------- 102

Query: 220 LCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTG 279
                       V+C     L V+ P+                                 
Sbjct: 103 ------------VQCGHDHELGVLCPH--------------------------------- 117

Query: 280 NCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPP 339
            CY K+++ET  +QDKI E LGL+PV+KEV+VLY+GEK     +  E  R++E+   RP 
Sbjct: 118 -CYNKVRQETQLMQDKIQEQLGLDPVEKEVIVLYEGEKAEEQADALENKRIVEMPKPRPM 176

Query: 340 WFSKNLLQKTTQKPSDSTD 358
           WF+KNLLQK+TQ+ S++ +
Sbjct: 177 WFTKNLLQKSTQQTSETKE 195

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609577|dbj|BAM18400.1| mitochondrial ribosomal protein L32 [Papilio xuthus]

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 58/225 (25%)

Query: 135 LFFISDFNVAVTQISSVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQ 194
           +F      +A+ QI       P    S+K++     L AVPK RR++E+R+ RKYG  + 
Sbjct: 22  MFGHPPRELALVQIYEKQPTHPKKSFSIKDIVGDGFLLAVPKFRRTIEKRLKRKYGYPEY 81

Query: 195 VWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEK 254
           VWKML+P+T++ VCN CG+ H    LC   Y                          +E 
Sbjct: 82  VWKMLVPKTNIKVCNECGHHHERGRLCEHCYK----------------------KVEIET 119

Query: 255 DKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYK 314
            + Q                        AKI+E+           LG +P++K+V+VLY+
Sbjct: 120 KEIQ------------------------AKIQEK-----------LGNSPIEKDVIVLYE 144

Query: 315 GEK-EHASEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD 358
           GE      +EF    R++E++ ERP WFSKNLLQK+TQ+PSDSTD
Sbjct: 145 GENPPDTPKEFWNGKRIVEMKKERPQWFSKNLLQKSTQQPSDSTD 189

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148298659|ref|NP_001091811.1| mitochondrial ribosomal protein L32 [Bombyx mori] gi|87248541|gb|ABD36323.1| mitochondrial ribosomal protein L32 [Bombyx mori]

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 60/227 (26%)

Query: 134 SLFFISDFNVAVTQISSVLTPKPVTK-LSLKELFDTSILWAVPKKRRSLERRMNRKYGSK 192
           SLF      +A+  +S    PKP  K  S+ +L     L AVPK RR++E+R+NRK+G  
Sbjct: 22  SLFGHPPKELALA-VSVNQQPKPTPKAFSIHDLIGDGFLLAVPKFRRTVEKRLNRKFGWP 80

Query: 193 DQVWKMLMPRTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNL 252
           + VWK  +P+T+L  C+           CG ++                           
Sbjct: 81  EYVWKPFVPKTNLKTCHE----------CGHHHEQG------------------------ 106

Query: 253 EKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVL 312
                        R C          GNCY KI +ET  +Q +I++ LG  P++++V+VL
Sbjct: 107 -------------RLC----------GNCYKKIGKETKEIQGEILKKLGSGPIEQDVIVL 143

Query: 313 YKGEK-EHASEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD 358
           Y+GE      +EF +  R++E++ ERP WFSKNLLQK+TQ+PS STD
Sbjct: 144 YEGETLPDQQKEFWKGKRIVEMKKERPQWFSKNLLQKSTQQPSKSTD 190

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789029|dbj|BAH71164.1| ACYPI008916 [Acyrthosiphon pisum]

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 106/218 (48%), Gaps = 60/218 (27%)

Query: 144 AVTQISSVLTPKPVTKL--SLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMP 201
           A++  S   T KP T    +++ LF  SIL AVPK RR++E+R+ RK+G  D  +KMLMP
Sbjct: 33  ALSFASPAETLKPSTPALTNVQRLFGDSILRAVPKHRRTIEKRLKRKFGCIDDFYKMLMP 92

Query: 202 RTDLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCD 261
           RTDL  CN           CG  Y     R  C                           
Sbjct: 93  RTDLLTCNQ----------CGHSYQ---RRHLCP-------------------------- 113

Query: 262 IVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEK-EHA 320
                             NCY ++K+ETT  Q+ I + LGL P+++EVVVLYKGE+ +  
Sbjct: 114 ------------------NCYKRVKDETTEFQEVIEKELGLEPIEQEVVVLYKGERTKQP 155

Query: 321 SEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD 358
            E      R+IE++ E+P WF +NLLQ+TT   SDS D
Sbjct: 156 VEGHWNGKRIIELKREKPSWFCRNLLQRTTIGNSDSKD 193

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170056688|ref|XP_001864143.1| 39S ribosomal protein L32, mitochondrial [Culex quinquefasciatus] gi|167876430|gb|EDS39813.1| 39S ribosomal protein L32, mitochondrial [Culex quinquefasciatus]

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 96/202 (47%), Gaps = 60/202 (29%)

Query: 150 SVLTPKPVTKLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCN 209
           S   P P    SLK L    ILWAVPK RR+LE+R+ RK+G+ D   K+L P+T L +C 
Sbjct: 49  SASNPDP---FSLKALLGDGILWAVPKHRRTLEKRLKRKFGTPDYKLKILTPKTHLRMCA 105

Query: 210 TCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCI 269
           T          CG  + +              V+ P                        
Sbjct: 106 T----------CGDDHEVG-------------VLCP------------------------ 118

Query: 270 YNTILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHR 329
                      CY K+K ET ++QDKI   LGL PVD+EVVVLY  E++    EF +  R
Sbjct: 119 ----------TCYGKVKAETEQMQDKIQAQLGLAPVDREVVVLYDRERDEQPAEFWQGKR 168

Query: 330 VIEVEGERPPWFSKNLLQKTTQ 351
           ++E+E  RP WF KNLLQ++TQ
Sbjct: 169 IVEMEKSRPVWFGKNLLQRSTQ 190

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195158220|ref|XP_002019990.1| GL13736 [Drosophila persimilis] gi|194116759|gb|EDW38802.1| GL13736 [Drosophila persimilis]

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 102/200 (51%), Gaps = 57/200 (28%)

Query: 159 KLSLKELFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSK 218
           + SLK+L    +LWAVP+ RRS+E+R+NRK+G  + VWK L  + ++  C T        
Sbjct: 50  EFSLKKLIADGMLWAVPRHRRSVEKRLNRKFGYPEYVWKPLKVKRNIRSCQT-------- 101

Query: 219 TLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFT 278
             CG  + L    V C F                                          
Sbjct: 102 --CGHDHELG---VLCPF------------------------------------------ 114

Query: 279 GNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERP 338
             CY K+ +ET ++Q KI E LGL+PVDKEV+VLY+GEK   + E  +  R++E++  RP
Sbjct: 115 --CYNKVLKETEQMQAKIQEKLGLDPVDKEVIVLYEGEKAEQTAEQLQGKRIVEMKKPRP 172

Query: 339 PWFSKNLLQKTTQKPSDSTD 358
            WF+KNLLQK+TQ+ S++ +
Sbjct: 173 MWFTKNLLQKSTQQQSEAKE 192

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
FB|FBgn0039835	195	mRpL32 "mitochondrial ribosoma	0.315	0.579	0.420	4.9e-23
UNIPROTKB|F1NAM9	188	MRPL32 "Uncharacterized protei	0.175	0.335	0.426	4.7e-10
UNIPROTKB|I3LTC4	188	MRPL32 "Uncharacterized protei	0.184	0.351	0.352	2e-09
MGI|MGI:2137226	187	Mrpl32 "mitochondrial ribosoma	0.175	0.336	0.367	2.4e-09
RGD|1310541	187	Mrpl32 "mitochondrial ribosoma	0.175	0.336	0.382	6.3e-09
UNIPROTKB|Q2TBI6	188	MRPL32 "39S ribosomal protein	0.175	0.335	0.367	1.1e-08
UNIPROTKB|Q9BYC8	188	MRPL32 "39S ribosomal protein	0.167	0.319	0.373	1e-06
WB|WBGene00016249	168	mrpl-32 [Caenorhabditis elegan	0.178	0.380	0.369	0.00013

FB|FBgn0039835 mRpL32 "mitochondrial ribosomal protein L32" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 4.9e-23, Sum P(2) = 4.9e-23
 Identities = 50/119 (42%), Positives = 74/119 (62%)

Query:   241 KVMYP-YGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYAKIKEETTRLQDKIVEA 299
             K  YP Y      EK   +SC   +Q  C ++  + +    CY K+ +ET  +Q KI E 
Sbjct:    75 KFGYPEYNWKPLREKRNLRSC---LQ--CGHDHEMGVLCPFCYQKVLKETELMQSKIQET 129

Query:   300 LGLNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPPWFSKNLLQKTTQKPSDSTD 358
             LGL+PVDKEV+VLY+GEK   S +  +  R++E++  RP WF+KNLLQK+TQ+ S++ +
Sbjct:   130 LGLDPVDKEVIVLYEGEKAEQSTDDLKNKRIVEMKKPRPMWFTKNLLQKSTQQLSETKE 188

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|F1NAM9 MRPL32 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 29/68 (42%), Positives = 38/68 (55%)

Query:   279 GNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGE 336
             G CYAK+K ET +++ +I +  G   N    E VVLY GEK     E  E  R+IE   +
Sbjct:   124 GYCYAKVKAETQQIRREISKKEGGAFNAPTVESVVLYDGEKP---TEKDEGKRIIERARK 180

Query:   337 RPPWFSKN 344
             RP WF +N
Sbjct:   181 RPSWFIRN 188

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|I3LTC4 MRPL32 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 105 (42.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
 Identities = 25/71 (35%), Positives = 40/71 (56%)

Query:   276 LFTGNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEV 333
             +  G CY K+++ET  ++ ++ +  G        E VVLY GE    SE+  +  R+IE 
Sbjct:   121 ILCGYCYEKVRKETAEIRRQMGKQEGGPFRAPTTETVVLYSGETP--SEQ-DQGKRIIER 177

Query:   334 EGERPPWFSKN 344
             E +RP WF++N
Sbjct:   178 ERKRPSWFTQN 188

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:2137226 Mrpl32 "mitochondrial ribosomal protein L32" [Mus musculus (taxid:10090)]

 Score = 108 (43.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query:   279 GNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGE 336
             G CY K+++ETT+++ +I    G        E +VLY GEK   SE+  +  R++E   +
Sbjct:   123 GYCYEKVRQETTKIRQQIGAQEGGPFRAPSVETMVLYTGEKP--SEK-DQGKRIVERNIK 179

Query:   337 RPPWFSKN 344
             RP WF++N
Sbjct:   180 RPSWFTQN 187

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1310541 Mrpl32 "mitochondrial ribosomal protein L32" [Rattus norvegicus (taxid:10116)]

 Score = 108 (43.1 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
 Identities = 26/68 (38%), Positives = 39/68 (57%)

Query:   279 GNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGE 336
             G CY K+ +ETT+++ +I    G        E VVLY GEK   SE+  +  R++E   +
Sbjct:   123 GYCYEKVSQETTKIRQQIWAQEGGPFKAPSIETVVLYTGEKP--SEK-DQGKRIVERNIK 179

Query:   337 RPPWFSKN 344
             RP WF++N
Sbjct:   180 RPSWFTQN 187

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

UNIPROTKB|Q2TBI6 MRPL32 "39S ribosomal protein L32, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 25/68 (36%), Positives = 37/68 (54%)

Query:   279 GNCYAKIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGE 336
             G CY K+++ET  ++ +I +  G        E VVLY GE      E  +  R+IE E +
Sbjct:   124 GYCYEKVRKETAEIRRQIGKQEGGPFKAPTVETVVLYSGE---TPSEHDQGKRIIERERK 180

Query:   337 RPPWFSKN 344
             RP WF++N
Sbjct:   181 RPSWFTQN 188

GO:0005739 "mitochondrion" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9BYC8 MRPL32 "39S ribosomal protein L32, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 92 (37.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query:   281 CYAKIKEETTRLQDKIVEALGLNPVDK---EVVVLYKGEKEHASEEFSETHRVIEVEGER 337
             CY K+ +ET  ++ +I +  G  P      E VVLY GE    SE+  +  R+IE + +R
Sbjct:   126 CYEKVCKETAEIRRQIGKQEG-GPFKAPTIETVVLYTGETP--SEQ-DQGKRIIERDRKR 181

Query:   338 PPWFSKN 344
             P WF++N
Sbjct:   182 PSWFTQN 188

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005761 "mitochondrial ribosome" evidence=NAS

GO:0006412 "translation" evidence=NAS

WB|WBGene00016249 mrpl-32 [Caenorhabditis elegans (taxid:6239)]

 Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
 Identities = 27/73 (36%), Positives = 43/73 (58%)

Query:   281 CYAKIKEETTRLQDKIVEALGLNPV-----DKEVVVLYKGEKEHASEEFSETHRVIEVEG 335
             CYAK+ + T+ ++ K+++    NP      DKEV V ++GE + A     +  RV+E+E 
Sbjct:   100 CYAKVHQLTSEIKKKMMQ---YNPYVGEKQDKEVYVKFRGEPD-APAAVVKGKRVLEIEK 155

Query:   336 ERPPWFSKNLLQK 348
             ERP WF K  L++
Sbjct:   156 ERPTWFKKLTLKE 168

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	358
pfam01783	56	pfam01783, Ribosomal_L32p, Ribosomal L32p protein	0.001

>gnl|CDD|201972 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCG--KYY 225
           AVPK++ S  R+  R+       WK+  P  +L  C  CG       +C    YY
Sbjct: 1   AVPKRKTSKSRKRKRR-----AHWKLKAP--NLVECPNCGELKLPHRVCPSCGYY 48

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG4080|consensus	176		100.0
PRK12286	57	rpmF 50S ribosomal protein L32; Reviewed	99.49
PF01783	56	Ribosomal_L32p: Ribosomal L32p protein family; Int	99.41
COG0333	57	RpmF Ribosomal protein L32 [Translation, ribosomal	99.34
PRK01110	60	rpmF 50S ribosomal protein L32; Validated	99.31
TIGR01031	55	rpmF_bact ribosomal protein L32. This protein desc	99.28
CHL00152	53	rpl32 ribosomal protein L32; Validated	96.99
PRK14892	99	putative transcription elongation factor Elf1; Pro	95.18

>KOG4080|consensus

Probab=100.00  E-value=2.1e-43  Score=312.92  Aligned_cols=156  Identities=38%  Similarity=0.610  Sum_probs=141.2

Q ss_pred             cccCCCCcccccCCcceeeeccCccCCCCCccCchhh----hccCCeEeecCCCCCChhHhhhccCCCCCCCccccccCC
Q psy16040        128 AMFSNSSLFFISDFNVAVTQISSVLTPKPVTKLSLKE----LFDTSILWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRT  203 (358)
Q Consensus       128 ~~fs~~s~F~~~~f~pALavqsp~~~p~Ps~~~Slkd----l~~DGILwAVPKKRrSkERRRkRR~g~pk~~~KLLkPKt  203 (358)
                      +||+..+-+++.+|++||+++.+...+.++...|...    ++++||||||||+|||++||++|+++.+   -|++++++
T Consensus        15 ~l~~lr~p~~s~p~~~~L~~~~~s~~~~ls~d~~~s~e~~~l~~n~illAVPK~r~S~eK~~kRk~~~~---~k~Lk~k~   91 (176)
T KOG4080|consen   15 NLFSLRSPSPSIPFAKALGVFQSSTAPKLSQDYSSSRENSMLIDNSILLAVPKKRTSKEKKVKRKFLYT---RKLLKPKD   91 (176)
T ss_pred             HHHhccCCCCCCCchhhhcccchhhccccccccccCCccccccccceEEeccccccchhhhhhhhccCc---cccccchh
Confidence            4788888899999999999999999999887776333    5667999999999999999999999865   38999999


Q ss_pred             CcccCCCCCCcccCccccccccccccceeccCCCcceeeeccCccccccccccccccceeeeccccccccccccCcchHH
Q psy16040        204 DLTVCNTCGYTHHSKTLCGKYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDKYQSCDIVIQRNCIYNTILFLFTGNCYA  283 (358)
Q Consensus       204 NLv~CPqCGhlKl~HrLC~~~fsla~t~~s~sg~S~lkv~~~~pl~q~~~~ah~~gch~~~~~~~~~~~~~~~~~g~Cy~  283 (358)
                      ||++||+|||+|++|+||                                                         .+||+
T Consensus        92 nl~~CP~CGh~k~a~~LC---------------------------------------------------------~~Cy~  114 (176)
T KOG4080|consen   92 NLNTCPACGHIKPAHTLC---------------------------------------------------------DYCYA  114 (176)
T ss_pred             ccccCcccCccccccccH---------------------------------------------------------HHHHH
Confidence            999999999999999999                                                         99999


Q ss_pred             HHHHHHHHHHHHHHHHcC--CCCCcceeEEEeCCCCCccccccccCceeEeccCCCCCCCchh
Q psy16040        284 KIKEETTRLQDKIVEALG--LNPVDKEVVVLYKGEKEHASEEFSETHRVIEVEGERPPWFSKN  344 (358)
Q Consensus       284 kik~eT~~iq~ki~~~lg--l~p~d~evvVlY~ge~~~~~~e~~~~~rvie~~~eRP~wFskn  344 (358)
                      ||..||.+|+.||..+.+  ++++|+||+|||.||++.. ....++|||+|++++||.||.+|
T Consensus       115 kV~ket~ei~~k~~iq~~~~~e~~d~e~~Vly~Ge~d~~-t~dlk~Kri~e~~k~Rp~wftkn  176 (176)
T KOG4080|consen  115 KVHKETSEIKKKMMIQEPYVGEKQDKEVYVLYRGEPDAP-TADLKGKRILEIEKERPTWFTKN  176 (176)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCcCcceEEEEecCCCCcc-chhhccchhhhhhccCccccccC
Confidence            999999999997766655  7999999999999999766 67899999999999999999987

>PRK12286 rpmF 50S ribosomal protein L32; Reviewed

Probab=99.49  E-value=1.1e-14  Score=109.54  Aligned_cols=45  Identities=31%  Similarity=0.632  Sum_probs=41.8

Q ss_pred             eecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040        172 WAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK  223 (358)
Q Consensus       172 wAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~  223 (358)
                      |||||+|+|++||++||+     +||+..|  +|+.||+||+++++|++|+.
T Consensus         1 MAvPKrk~S~srr~~RRs-----h~~l~~~--~l~~C~~CG~~~~~H~vC~~   45 (57)
T PRK12286          1 MAVPKRKTSKSRKRKRRA-----HFKLKAP--GLVECPNCGEPKLPHRVCPS   45 (57)
T ss_pred             CCcCcCcCChhhcchhcc-----cccccCC--cceECCCCCCccCCeEECCC
Confidence            899999999999999999     4788888  99999999999999999943

>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.41  E-value=9.7e-14  Score=102.99  Aligned_cols=44  Identities=34%  Similarity=0.731  Sum_probs=35.3

Q ss_pred             ecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040        173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK  223 (358)
Q Consensus       173 AVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~  223 (358)
                      ||||+|+|++|+++||+     +|++-.|  +|+.||+||+++++|++|+.
T Consensus         1 AvPKrk~Sksr~~~Rrs-----~~~l~~~--~l~~c~~cg~~~~~H~vc~~   44 (56)
T PF01783_consen    1 AVPKRKTSKSRKRMRRS-----HWKLKAP--NLVKCPNCGEPKLPHRVCPS   44 (56)
T ss_dssp             ---SS-SCHHHHHHHTT-----TTS--TT--SEEESSSSSSEESTTSBCTT
T ss_pred             CCCCCcCChhHccchhc-----ccccccc--ceeeeccCCCEecccEeeCC
Confidence            89999999999999999     4777777  99999999999999999954

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....

>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=2.8e-13  Score=102.99  Aligned_cols=44  Identities=34%  Similarity=0.561  Sum_probs=41.7

Q ss_pred             eecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCccccc
Q psy16040        172 WAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCG  222 (358)
Q Consensus       172 wAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~  222 (358)
                      |||||+|+|++||++||.     ++++..|  +++.|++||+++++|++|.
T Consensus         1 MAVPkrktSksrr~~RRs-----h~~l~~~--~~~~c~~cG~~~l~Hrvc~   44 (57)
T COG0333           1 MAVPKRKTSKSRRRMRRS-----HDALKAP--TLSVCPNCGEYKLPHRVCL   44 (57)
T ss_pred             CCCCcccCChhhhhhhhh-----hHhhhCc--cceeccCCCCcccCceEcC
Confidence            899999999999999999     5899999  8999999999999999993

>PRK01110 rpmF 50S ribosomal protein L32; Validated

Probab=99.31  E-value=5e-13  Score=101.40  Aligned_cols=43  Identities=35%  Similarity=0.552  Sum_probs=41.2

Q ss_pred             eecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccc
Q psy16040        172 WAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLC  221 (358)
Q Consensus       172 wAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC  221 (358)
                      |||||+|+|++|+++||+     +|++..|  +++.|++||+++++|++|
T Consensus         1 MAVPKrK~Sksr~~~RRa-----~~~~~~~--~~~~c~~cg~~~~pH~vc   43 (60)
T PRK01110          1 MAVPKRKTSKSKRRMRRS-----HWKLTAP--TLSVDKTTGEYHLPHHVS   43 (60)
T ss_pred             CCCCcCccchhhchhhhh-----hhhccCC--ceeEcCCCCceeccceec
Confidence            899999999999999999     5899888  899999999999999998

>TIGR01031 rpmF_bact ribosomal protein L32

Probab=99.28  E-value=1.3e-12  Score=97.55  Aligned_cols=44  Identities=32%  Similarity=0.594  Sum_probs=40.1

Q ss_pred             cCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040        174 VPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK  223 (358)
Q Consensus       174 VPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~  223 (358)
                      |||+|+|++||++||+.    .||+..|  +|+.||+||+++++|++|+.
T Consensus         1 vPKrk~Sksr~~~RRah----~~kl~~p--~l~~C~~cG~~~~~H~vc~~   44 (55)
T TIGR01031         1 VPKRKTSKSRKRKRRSH----DAKLTAP--TLVVCPNCGEFKLPHRVCPS   44 (55)
T ss_pred             CCCCcCCcccccchhcC----cccccCC--cceECCCCCCcccCeeECCc
Confidence            89999999999999992    3788888  99999999999999999944

This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.

>CHL00152 rpl32 ribosomal protein L32; Validated

Probab=96.99  E-value=0.00015  Score=55.29  Aligned_cols=18  Identities=50%  Similarity=0.575  Sum_probs=17.5

Q ss_pred             eecCCCCCChhHhhhccC
Q psy16040        172 WAVPKKRRSLERRMNRKY  189 (358)
Q Consensus       172 wAVPKKRrSkERRRkRR~  189 (358)
                      |||||||+|++|++.|+.
T Consensus         1 MAVPKKRtSksKk~~Rk~   18 (53)
T CHL00152          1 MAVPKKRTSKSKKRIRKN   18 (53)
T ss_pred             CCCCCCccchHHHHHHHH
Confidence            899999999999999998

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=95.18  E-value=0.011  Score=49.44  Aligned_cols=25  Identities=32%  Similarity=0.659  Sum_probs=20.4

Q ss_pred             cccccCCCcccCCCCCCcccC--------cccccc
Q psy16040        197 KMLMPRTDLTVCNTCGYTHHS--------KTLCGK  223 (358)
Q Consensus       197 KLLkPKtNLv~CPqCGhlKl~--------HrLC~~  223 (358)
                      ++-.|  ++..||+||+..++        |++|+.
T Consensus        15 k~klp--t~f~CP~Cge~~v~v~~~k~~~h~~C~~   47 (99)
T PRK14892         15 KPKLP--KIFECPRCGKVSISVKIKKNIAIITCGN   47 (99)
T ss_pred             ccCCC--cEeECCCCCCeEeeeecCCCcceEECCC
Confidence            45556  89999999999986        999943

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 54/382 (14%), Positives = 112/382 (29%), Gaps = 134/382 (35%)

Query: 36  EVTSMEVCYQRNWHKQAVTSVI---IGLDFNVAVTQNS--SVLT----------PKPVTK 80
           E    +  Y+       + SV       +F+    Q+   S+L+             V+ 
Sbjct: 10  ETGEHQYQYKD------ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 81  LSLKELFDTSILWAVPKK-----VEDAHAENRP---DSLQHMCK---MIDVSSDQVPNAM 129
                LF    L +  ++     VE+    N       ++   +   M+     +  + +
Sbjct: 64  TLR--LFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 130 FSNSSLFFISDFNV-----------AVTQIS---------------SVLTPKPVTKLSLK 163
           ++++ +F  + +NV           A+ ++                + +         ++
Sbjct: 120 YNDNQVF--AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 164 ELFDTSILWAVPKKRRSLERRMN-RKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCG 222
              D  I W            +N +   S + V +ML                  + L  
Sbjct: 178 CKMDFKIFW------------LNLKNCNSPETVLEML------------------QKLL- 206

Query: 223 KYYSLSISRVKCSFPSLLKVMYPYGLTTNLEKDK---------YQSCDIVIQRNCIYN-T 272
                   ++  ++ S         L  +  + +         Y++C +V+  N + N  
Sbjct: 207 -------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LN-VQNAK 257

Query: 273 ILFLFTGNCYAKIKEETTRLQDKIVEALGLNPVDKEVVVLYKGEKEHASEEFSETHRVIE 332
               F  +C  KI   TTR   K V    L+      + L     +H S   +      E
Sbjct: 258 AWNAFNLSC--KIL-LTTR--FKQV-TDFLSAATTTHISL-----DHHSMTLTPD----E 302

Query: 333 VEGERPPWFSKNLLQKTTQKPS 354
           V+        K L  +    P 
Sbjct: 303 VKS----LLLKYLDCRPQDLPR 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
2zjr_Z	60	50S ribosomal protein L32; ribosome, large ribosom	99.58
3v2d_5	60	50S ribosomal protein L32; ribosome associated inh	99.58
3r8s_0	56	50S ribosomal protein L32; protein biosynthesis, R	99.39
3bbo_2	57	Ribosomal protein L32; large ribosomal subunit, sp	97.25

>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...

Probab=99.58  E-value=4.1e-16  Score=117.22  Aligned_cols=46  Identities=30%  Similarity=0.499  Sum_probs=43.0

Q ss_pred             EeecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040        171 LWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK  223 (358)
Q Consensus       171 LwAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~  223 (358)
                      ||||||+|+|++||++||+     +||+..|  +|+.||+||+++++|++|+.
T Consensus         3 lMAVPKrK~Sksrr~~RRs-----h~kl~~p--~l~~c~~cG~~~~pH~vc~~   48 (60)
T 2zjr_Z            3 KHPVPKKKTSKSKRDMRRS-----HHALTAP--NLTECPQCHGKKLSHHICPN   48 (60)
T ss_dssp             CCSCCSSCCCTTHHHHHTT-----TCCCCCC--CCEECTTTCCEECTTBCCTT
T ss_pred             ccccCCCCCChHHhhhhcc-----cccccCC--CceECCCCCCEeCCceEcCC
Confidence            6999999999999999999     4799877  99999999999999999965

>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...

Probab=99.58  E-value=4.1e-16  Score=117.34  Aligned_cols=46  Identities=30%  Similarity=0.499  Sum_probs=43.0

Q ss_pred             EeecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040        171 LWAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK  223 (358)
Q Consensus       171 LwAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~  223 (358)
                      ||||||+|+|++||++||+     +||+..|  +|+.||+||+++++|++|+.
T Consensus         3 ~MAVPKrK~Sksr~~~RRs-----h~kl~~p--~l~~c~~cGe~~~~H~vc~~   48 (60)
T 3v2d_5            3 KHPVPKKKTSKARRDARRS-----HHALTPP--TLVPCPECKAMKPPHTVCPE   48 (60)
T ss_dssp             CCCCCSSCCCHHHHHHHGG-----GCCCCCC--CCEECTTTCCEECTTSCCTT
T ss_pred             ccccCcCcCChhhcchhhc-----cccccCC--ceeECCCCCCeecceEEcCC
Confidence            6899999999999999998     4899888  99999999999999999954

>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...

Probab=99.39  E-value=8e-14  Score=103.42  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             ecCCCCCChhHhhhccCCCCCCCccccc-cCCCcccCCCCCCcccCccccc
Q psy16040        173 AVPKKRRSLERRMNRKYGSKDQVWKMLM-PRTDLTVCNTCGYTHHSKTLCG  222 (358)
Q Consensus       173 AVPKKRrSkERRRkRR~g~pk~~~KLLk-PKtNLv~CPqCGhlKl~HrLC~  222 (358)
                      ||||+|+|++||++||+     +|++.. |  +|+.||+||+++++|++|+
T Consensus         1 AVPKrK~Sksrr~~RRs-----h~kl~~~p--~l~~c~~cGe~~l~H~vc~   44 (56)
T 3r8s_0            1 AVQQNKPTRSKRGMRRS-----HDALTAVT--SLSVDKTSGEKHLRHHITA   44 (56)
T ss_dssp             CCCSSCCCHHHHHHHGG-----GCCCCCCC--CEEECTTTCCEEETTBCCT
T ss_pred             CCCCCcCChhhhhhhhc-----hhhcccCC--ceeECCCCCCeecccEECC
Confidence            89999999999999998     478887 7  9999999999999999993

>3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=97.25  E-value=7.7e-05  Score=56.38  Aligned_cols=24  Identities=46%  Similarity=0.646  Sum_probs=20.6

Q ss_pred             eecCCCCCChhHhhhccCCCCCCCccccc
Q psy16040        172 WAVPKKRRSLERRMNRKYGSKDQVWKMLM  200 (358)
Q Consensus       172 wAVPKKRrSkERRRkRR~g~pk~~~KLLk  200 (358)
                      |||||||+|++|++.|+.     .||.-.
T Consensus         1 MAVPKKrtSkskk~~Rk~-----~WK~ka   24 (57)
T 3bbo_2            1 MAVPKKRTSIYKKRIRKN-----IWKKKG   24 (57)
T ss_dssp             CCCCSSCCCTTHHHHTTS-----TTCCCT
T ss_pred             CCCCCCccchhHHHHHHH-----HHHHHH
Confidence            899999999999999998     476433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d2qam01	56	g.41.8.5 (0:1-56) Ribosomal protein L32p {Escheric	0.002

>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]} Length = 56

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Escherichia coli [TaxId: 562]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTH--HSKTLCGKY 224
           AV + + +  +R  R+          L   T L+V  T G  H  H  T  G Y
Sbjct: 1   AVQQNKPTRSKRGMRRSHDA------LTAVTSLSVDKTSGEKHLRHHITADGYY 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d2zjrz1	58	Ribosomal protein L32p {Deinococcus radiodurans [T	99.38
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	99.38
d2qam01	56	Ribosomal protein L32p {Escherichia coli [TaxId: 5	99.26

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.38  E-value=5.5e-14  Score=103.76  Aligned_cols=45  Identities=31%  Similarity=0.526  Sum_probs=41.9

Q ss_pred             eecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040        172 WAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK  223 (358)
Q Consensus       172 wAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~  223 (358)
                      |+|||+|+|++|+++||+     ++++..|  +|++||+||+++++|++|+.
T Consensus         3 ~pVPKrk~SksRr~~RRs-----h~~l~~p--~l~~C~~CG~~~lpHrvC~~   47 (58)
T d2zjrz1           3 HPVPKKKTSKSKRDMRRS-----HHALTAP--NLTECPQCHGKKLSHHICPN   47 (58)
T ss_dssp             CSCCSSCCCTTHHHHHTT-----TCCCCCC--CCEECTTTCCEECTTBCCTT
T ss_pred             CCCCCCccCcccchhhhh-----hhhhcCC--ceeECCCCCCCccceeeCCC
Confidence            799999999999999998     4799889  99999999999999999943

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=7e-14  Score=103.37  Aligned_cols=45  Identities=31%  Similarity=0.525  Sum_probs=41.9

Q ss_pred             eecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccccc
Q psy16040        172 WAVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLCGK  223 (358)
Q Consensus       172 wAVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC~~  223 (358)
                      |+|||+|+|++|+++||+     +|++..|  +|+.|++||+++++|++|+.
T Consensus         3 ~pVPKrk~Sksr~~~RRs-----h~~l~~p--~l~~C~~CG~~~~pHrvC~~   47 (59)
T d2j0151           3 HPVPKKKTSKARRDARRS-----HHALTPP--TLVPCPECKAMKPPHTVCPE   47 (59)
T ss_dssp             SSCCSSCCCHHHHHHHHG-----GGCCCCC--CCBCCSSSSSCBCTTCBCTT
T ss_pred             CCCCCCcccchhchhhhc-----cccccCC--ceeECCCCCCcccceeECCC
Confidence            799999999999999998     5899888  99999999999999999943

>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=9.1e-13  Score=96.47  Aligned_cols=43  Identities=23%  Similarity=0.236  Sum_probs=37.8

Q ss_pred             ecCCCCCChhHhhhccCCCCCCCccccccCCCcccCCCCCCcccCcccc
Q psy16040        173 AVPKKRRSLERRMNRKYGSKDQVWKMLMPRTDLTVCNTCGYTHHSKTLC  221 (358)
Q Consensus       173 AVPKKRrSkERRRkRR~g~pk~~~KLLkPKtNLv~CPqCGhlKl~HrLC  221 (358)
                      ||||+|+|++||++||+     ++++.. ..++..||+||+++++|++|
T Consensus         1 AVPKrK~Sksr~~~RRa-----h~~l~~-~~~~~~c~~CG~~~lpH~vC   43 (56)
T d2qam01           1 AVQQNKPTRSKRGMRRS-----HDALTA-VTSLSVDKTSGEKHLRHHIT   43 (56)
T ss_dssp             CCCSSCCCHHHHHHHTT-----TTCCCC-CSCCEECSSSCCEECTTSCC
T ss_pred             CCCCCCCCccccccchh-----hhhhcc-CCceeECCCCCCCccCcEEC
Confidence            89999999999999998     355543 24899999999999999999