Psyllid ID: psy16052
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | 2.2.26 [Sep-21-2011] | |||||||
| P98167 | 5146 | SCO-spondin OS=Bos taurus | yes | N/A | 0.107 | 0.009 | 0.462 | 1e-06 | |
| A2VEC9 | 5147 | SCO-spondin OS=Homo sapie | yes | N/A | 0.155 | 0.014 | 0.361 | 2e-05 | |
| Q700K0 | 5141 | SCO-spondin OS=Rattus nor | yes | N/A | 0.084 | 0.007 | 0.523 | 9e-05 | |
| P98160 | 4391 | Basement membrane-specifi | no | N/A | 0.109 | 0.011 | 0.358 | 0.0001 | |
| P48770 | 547 | Complement component C9 O | no | N/A | 0.084 | 0.073 | 0.545 | 0.0002 | |
| Q05793 | 3707 | Basement membrane-specifi | no | N/A | 0.077 | 0.009 | 0.465 | 0.0002 | |
| Q8CG65 | 4998 | SCO-spondin OS=Mus muscul | no | N/A | 0.084 | 0.008 | 0.523 | 0.0003 | |
| Q98930 | 1592 | Sortilin-related receptor | no | N/A | 0.157 | 0.047 | 0.346 | 0.0006 | |
| O75096 | 1905 | Low-density lipoprotein r | no | N/A | 0.094 | 0.023 | 0.458 | 0.0008 | |
| O75197 | 1615 | Low-density lipoprotein r | no | N/A | 0.132 | 0.039 | 0.375 | 0.0008 |
| >sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2 | Back alignment and function desciption |
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Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 31/54 (57%)
Query: 108 LACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFC 161
ACG G C RG C+GE+DC DGSDE+ CD P+ AP + CV + C
Sbjct: 1567 FACGSGECAPRGWRCDGEEDCADGSDESGCDRPCAPHHAPCARGSHCVAAEQLC 1620
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Involved in the modulation of neuronal aggregation. May be involved in developmental events during the formation of the central nervous system. Bos taurus (taxid: 9913) |
| >sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1 | Back alignment and function description |
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| >sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4 | Back alignment and function description |
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| >sp|P48770|CO9_HORSE Complement component C9 OS=Equus caballus GN=C9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8CG65|SSPO_MOUSE SCO-spondin OS=Mus musculus GN=Sspo PE=2 SV=2 | Back alignment and function description |
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| >sp|Q98930|SORL_CHICK Sortilin-related receptor (Fragment) OS=Gallus gallus GN=SORL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4 | Back alignment and function description |
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| >sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | ||||||
| 307166468 | 555 | hypothetical protein EAG_13038 [Camponot | 0.981 | 0.841 | 0.906 | 0.0 | |
| 158300739 | 537 | AGAP011936-PA [Anopheles gambiae str. PE | 0.985 | 0.873 | 0.908 | 0.0 | |
| 157136306 | 535 | hypothetical protein AaeL_AAEL003419 [Ae | 0.991 | 0.882 | 0.900 | 0.0 | |
| 156523066 | 534 | chitin deacetylase 1 precursor [Triboliu | 0.978 | 0.872 | 0.916 | 0.0 | |
| 48097532 | 532 | PREDICTED: hypothetical protein LOC40836 | 0.976 | 0.874 | 0.899 | 0.0 | |
| 242007864 | 1021 | conserved hypothetical protein [Pediculu | 0.972 | 0.453 | 0.905 | 0.0 | |
| 383864665 | 533 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.874 | 0.897 | 0.0 | |
| 125977876 | 541 | GA16758 [Drosophila pseudoobscura pseudo | 0.983 | 0.865 | 0.906 | 0.0 | |
| 195496159 | 999 | GE22470 [Drosophila yakuba] gi|194181675 | 0.983 | 0.468 | 0.897 | 0.0 | |
| 312372218 | 619 | hypothetical protein AND_20463 [Anophele | 0.993 | 0.764 | 0.833 | 0.0 |
| >gi|307166468|gb|EFN60563.1| hypothetical protein EAG_13038 [Camponotus floridanus] | Back alignment and taxonomy information |
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Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/470 (90%), Positives = 449/470 (95%), Gaps = 3/470 (0%)
Query: 4 AIRVKRQEETSTKKEESFEHELCKDKDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPA 63
+ RVKRQEE KKEESFE+E+CKDKDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPA
Sbjct: 42 STRVKRQEE---KKEESFENEICKDKDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPA 98
Query: 64 GLYFDIEKQTCDWKGAVKNCKLKNKERKVKPLLYTDEPLCQDGFLACGDGACIERGLFCN 123
GLYFDI+KQTCDWK +V NCKLKNKERK KPLLYT+EPLCQDGFLACGDG+CIERGLFCN
Sbjct: 99 GLYFDIDKQTCDWKDSVNNCKLKNKERKAKPLLYTEEPLCQDGFLACGDGSCIERGLFCN 158
Query: 124 GEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFCSEDGTYIPGDLPSKEVPQMITI 183
GEKDC DGSDEN CD +NDPNRAPPCDPAVCVLPDCFCSEDGT IPGDLP K+VPQM+TI
Sbjct: 159 GEKDCTDGSDENICDMDNDPNRAPPCDPAVCVLPDCFCSEDGTTIPGDLPGKDVPQMVTI 218
Query: 184 TFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYTNYSAVQELHRKGHEVAVHS 243
TFDDAINNNNI LYKE+FNGKRKNPNGCDIKATFFVSHKYTNYSAVQE+HRKGHE+AVHS
Sbjct: 219 TFDDAINNNNIGLYKEIFNGKRKNPNGCDIKATFFVSHKYTNYSAVQEMHRKGHEIAVHS 278
Query: 244 ITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMME 303
I+HNDDE FWS+ATVDDWAKEMAGMRIIAEK+ANLSDNSVVGVRAPYLRVGGNNQFTMME
Sbjct: 279 ISHNDDERFWSDATVDDWAKEMAGMRIIAEKFANLSDNSVVGVRAPYLRVGGNNQFTMME 338
Query: 304 EQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQHCPTRSHAVWEMVMNELDRREDP 363
EQAFLYDSTITA L+NPPLWPYTMYFRMPHRCHGNLQHCPTRSHAVWEMVMNELDRREDP
Sbjct: 339 EQAFLYDSTITAALNNPPLWPYTMYFRMPHRCHGNLQHCPTRSHAVWEMVMNELDRREDP 398
Query: 364 NFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLD 423
DEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHY+QNRAPLGLYFHAAWLKNNPEFLD
Sbjct: 399 QNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYEQNRAPLGLYFHAAWLKNNPEFLD 458
Query: 424 AFLYWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFDPWREKCAVE 473
AFLYW+DEI++ H DVYFVTMTQVIQWIQNPRT+TE KNF+PWREKC VE
Sbjct: 459 AFLYWIDEILQSHTDVYFVTMTQVIQWIQNPRTVTESKNFEPWREKCVVE 508
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Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158300739|ref|XP_320597.3| AGAP011936-PA [Anopheles gambiae str. PEST] gi|157013305|gb|EAA00275.3| AGAP011936-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|157136306|ref|XP_001656823.1| hypothetical protein AaeL_AAEL003419 [Aedes aegypti] gi|108881091|gb|EAT45316.1| AAEL003419-PA [Aedes aegypti] | Back alignment and taxonomy information |
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| >gi|156523066|ref|NP_001095946.1| chitin deacetylase 1 precursor [Tribolium castaneum] gi|155675830|gb|ABU25223.1| chitin deacetylase 1 [Tribolium castaneum] gi|270007508|gb|EFA03956.1| hypothetical protein TcasGA2_TC014100 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|48097532|ref|XP_391915.1| PREDICTED: hypothetical protein LOC408365 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|242007864|ref|XP_002424738.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508231|gb|EEB12000.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|383864665|ref|XP_003707798.1| PREDICTED: uncharacterized protein LOC100875431 [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|125977876|ref|XP_001352971.1| GA16758 [Drosophila pseudoobscura pseudoobscura] gi|54641722|gb|EAL30472.1| GA16758 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
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| >gi|195496159|ref|XP_002095574.1| GE22470 [Drosophila yakuba] gi|194181675|gb|EDW95286.1| GE22470 [Drosophila yakuba] | Back alignment and taxonomy information |
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| >gi|312372218|gb|EFR20230.1| hypothetical protein AND_20463 [Anopheles darlingi] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | ||||||
| FB|FBgn0260653 | 541 | serp "serpentine" [Drosophila | 0.983 | 0.865 | 0.876 | 1.2e-239 | |
| FB|FBgn0261341 | 555 | verm "vermiform" [Drosophila m | 0.936 | 0.803 | 0.595 | 1.2e-163 | |
| FB|FBgn0032598 | 577 | ChLD3 "ChLD3" [Drosophila mela | 0.861 | 0.710 | 0.485 | 4.1e-113 | |
| FB|FBgn0051973 | 1998 | Cda5 "Chitin deacetylase-like | 0.647 | 0.154 | 0.397 | 1.5e-67 | |
| FB|FBgn0052499 | 486 | Cda4 "Chitin deacetylase-like | 0.745 | 0.730 | 0.376 | 8.2e-67 | |
| WB|WBGene00002983 | 1884 | lgx-1 [Caenorhabditis elegans | 0.739 | 0.186 | 0.359 | 1.2e-55 | |
| FB|FBgn0034197 | 397 | Cda9 "Chitin deacetylase-like | 0.623 | 0.748 | 0.352 | 3e-53 | |
| WB|WBGene00018607 | 2444 | F48E3.8b [Caenorhabditis elega | 0.628 | 0.122 | 0.344 | 6.9e-51 | |
| UNIPROTKB|F1S1W0 | 214 | LRP2 "Uncharacterized protein" | 0.228 | 0.509 | 0.344 | 3.9e-06 | |
| UNIPROTKB|F1M1B5 | 449 | F1M1B5 "Uncharacterized protei | 0.178 | 0.189 | 0.315 | 6.3e-06 |
| FB|FBgn0260653 serp "serpentine" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 2310 (818.2 bits), Expect = 1.2e-239, P = 1.2e-239
Identities = 412/470 (87%), Positives = 432/470 (91%)
Query: 5 IRVKRQXXXXXXXXXXXXXX-LCKDKDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPA 63
+R KRQ LCKDKDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPA
Sbjct: 26 LRYKRQATTEETKKEESFEKELCKDKDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPA 85
Query: 64 GLYFDIEKQTCDWKGAVKNCKLKNKERKVKPLLYTDEPLCQDGFLACGDGACIERGLFCN 123
GLYFDIEKQTCDWK +VKNCK KNKER+VKPLL+TDEPLCQDGFLACGDG CIERGLFCN
Sbjct: 86 GLYFDIEKQTCDWKKSVKNCKSKNKERRVKPLLHTDEPLCQDGFLACGDGNCIERGLFCN 145
Query: 124 GEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFCSEDGTYIPGDLPSKEVPQMITI 183
GEKDC+DGSDENTCD +NDPNRAPPCDPAVCVLPDCFCSEDGT IPGDLP+K+VP MITI
Sbjct: 146 GEKDCSDGSDENTCDIDNDPNRAPPCDPAVCVLPDCFCSEDGTSIPGDLPAKDVPMMITI 205
Query: 184 TFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYTNYSAVQELHRKGHEVAVHS 243
TFDDAINNNNI LYKE+F RKNPNGC IKAT+FVSHKYTNYSAVQE RKGHE+AVHS
Sbjct: 206 TFDDAINNNNIELYKEIFKD-RKNPNGCSIKATYFVSHKYTNYSAVQETARKGHEIAVHS 264
Query: 244 ITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMME 303
ITHND+E FWSNATVDDWAKEMAGMRII EK+AN++DNSVVGVRAPYLRVGGNNQFTMME
Sbjct: 265 ITHNDEERFWSNATVDDWAKEMAGMRIITEKFANITDNSVVGVRAPYLRVGGNNQFTMME 324
Query: 304 EQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQHCPTRSHAVWEMVMNELDRREDP 363
EQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQ CPTRSHAVWEMVMNELDRREDP
Sbjct: 325 EQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTRSHAVWEMVMNELDRREDP 384
Query: 364 NFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLD 423
DEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLD
Sbjct: 385 VNDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLD 444
Query: 424 AFLYWVDEIIERHKDVYFVTMTQVIQWIQNPRTITEVKNFDPWREKCAVE 473
AFLYW+DEI+ H DVYFVTMTQVIQW+QNPRTI+EVKNF+PWREKC VE
Sbjct: 445 AFLYWIDEILANHNDVYFVTMTQVIQWMQNPRTISEVKNFEPWREKCVVE 494
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| FB|FBgn0261341 verm "vermiform" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0032598 ChLD3 "ChLD3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0051973 Cda5 "Chitin deacetylase-like 5" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| FB|FBgn0052499 Cda4 "Chitin deacetylase-like 4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| WB|WBGene00002983 lgx-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| FB|FBgn0034197 Cda9 "Chitin deacetylase-like 9" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| WB|WBGene00018607 F48E3.8b [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1S1W0 LRP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M1B5 F1M1B5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 476 | |||
| cd10974 | 269 | cd10974, CE4_CDA_like_1, Putative catalytic domain | 1e-180 | |
| cd10975 | 268 | cd10975, CE4_CDA_like_2, Putative catalytic domain | 1e-105 | |
| cd10919 | 273 | cd10919, CE4_CDA_like, Putative catalytic domain o | 1e-104 | |
| cd10976 | 299 | cd10976, CE4_CDA_like_3, Putative catalytic domain | 3e-11 | |
| pfam01522 | 124 | pfam01522, Polysacc_deac_1, Polysaccharide deacety | 2e-10 | |
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 3e-09 | |
| cd10585 | 142 | cd10585, CE4_SF, Catalytic NodB homology domain of | 1e-08 | |
| cd10967 | 202 | cd10967, CE4_GLA_like_6s, Putative catalytic NodB | 2e-08 | |
| cd10954 | 180 | cd10954, CE4_CtAXE_like, Catalytic NodB homology d | 4e-08 | |
| pfam01607 | 53 | pfam01607, CBM_14, Chitin binding Peritrophin-A do | 9e-08 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 3e-07 | |
| cd10941 | 258 | cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalyti | 3e-07 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 9e-07 | |
| cd10917 | 171 | cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homol | 1e-06 | |
| TIGR03006 | 272 | TIGR03006, pepcterm_polyde, polysaccharide deacety | 2e-06 | |
| cd10944 | 189 | cd10944, CE4_SmPgdA_like, Catalytic NodB homology | 7e-06 | |
| cd10938 | 258 | cd10938, CE4_HpPgdA_like, Catalytic domain of Heli | 8e-06 | |
| cd10916 | 247 | cd10916, CE4_PuuE_HpPgdA_like, Catalytic domain of | 4e-05 | |
| smart00494 | 49 | smart00494, ChtBD2, Chitin-binding domain type 2 | 4e-05 | |
| cd10951 | 197 | cd10951, CE4_ClCDA_like, Catalytic NodB homology d | 6e-05 | |
| COG0726 | 267 | COG0726, CDA1, Predicted xylanase/chitin deacetyla | 2e-04 | |
| TIGR02764 | 191 | TIGR02764, spore_ybaN_pdaB, polysaccharide deacety | 3e-04 | |
| cd10950 | 188 | cd10950, CE4_BsYlxY_like, Putative catalytic NodB | 3e-04 | |
| cd10918 | 157 | cd10918, CE4_NodB_like_5s_6s, Putative catalytic N | 4e-04 | |
| cd10948 | 223 | cd10948, CE4_BsPdaA_like, Catalytic NodB homology | 5e-04 | |
| cd10947 | 177 | cd10947, CE4_SpPgdA_BsYjeA_like, Catalytic NodB ho | 7e-04 | |
| cd10952 | 178 | cd10952, CE4_MrCDA_like, Catalytic NodB homology d | 8e-04 | |
| cd10959 | 187 | cd10959, CE4_NodB_like_3, Catalytic NodB homology | 9e-04 | |
| cd10956 | 194 | cd10956, CE4_BH1302_like, Putative catalytic NodB | 0.002 |
| >gnl|CDD|200596 cd10974, CE4_CDA_like_1, Putative catalytic domain of chitin deacetylase-like proteins with additional chitin-binding peritrophin-A domain (ChBD) and/or a low-density lipoprotein receptor class A domain (LDLa) | Back alignment and domain information |
|---|
Score = 504 bits (1301), Expect = e-180
Identities = 193/278 (69%), Positives = 222/278 (79%), Gaps = 10/278 (3%)
Query: 178 PQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYTNYSAVQELHRKGH 237
PQMIT+TFDDAIN+NNI LYK++FNGKR NPNGC IK TFFVSH+YTNY AVQ+LHRKGH
Sbjct: 1 PQMITLTFDDAINDNNIELYKKIFNGKRNNPNGCPIKGTFFVSHEYTNYQAVQKLHRKGH 60
Query: 238 EVAVHSITHNDDENFWSNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGNN 297
E+AVHSITHNDDEN NAT +DW KEM GMR I EK+AN++DN +VG+RAP+LRVGGN
Sbjct: 61 EIAVHSITHNDDEN---NATYEDWVKEMVGMREILEKFANITDNEIVGMRAPFLRVGGNR 117
Query: 298 QFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQHCPTRS-HAVWEMVMNE 356
QF MMEE FLYDS+ITAP SN PLWPYT+ ++MPH CHG Q+CPTRS VWEMV+NE
Sbjct: 118 QFEMMEEFGFLYDSSITAPPSNVPLWPYTLDYKMPHECHG--QNCPTRSFPGVWEMVLNE 175
Query: 357 LDRREDPNFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLK 416
LD R+DP DE L AM DSC NIL+GDQ Y +L HNF+RHY NRAP GLYFH WLK
Sbjct: 176 LDVRDDPQGDEPL---AMDDSCLNILSGDQVYEWLQHNFERHYLTNRAPYGLYFHTNWLK 232
Query: 417 NNPEFLDAFLYWVDEIIERHKDVYFVTMTQVIQWIQNP 454
E L A ++DEI++ DVYFVTMTQ IQW+QNP
Sbjct: 233 TKNELLRALQKFLDEILQ-LPDVYFVTMTQAIQWMQNP 269
|
Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues. CDAs have been isolated and characterized from various bacterial and fungal species and belong to the larger carbohydrate esterase 4 (CE4) superfamily. This family includes many CDA-like proteins mainly from insects, which contain a putative CDA-like catalytic domain similar to the catalytic NodB homology domain of CE4 esterases. In addition to the CDA-like domain, family members contain two additional domains, a chitin-binding peritrophin-A domain (ChBD) and a low-density lipoprotein receptor class A domain (LDLa), or have the ChBD domain but do not have the LDLa domain. Length = 269 |
| >gnl|CDD|200597 cd10975, CE4_CDA_like_2, Putative catalytic domain of chitin deacetylase-like proteins | Back alignment and domain information |
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| >gnl|CDD|200545 cd10919, CE4_CDA_like, Putative catalytic domain of chitin deacetylase-like proteins from insects and similar proteins | Back alignment and domain information |
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| >gnl|CDD|200598 cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins | Back alignment and domain information |
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| >gnl|CDD|216550 pfam01522, Polysacc_deac_1, Polysaccharide deacetylase | Back alignment and domain information |
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| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
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| >gnl|CDD|213020 cd10585, CE4_SF, Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily | Back alignment and domain information |
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| >gnl|CDD|200589 cd10967, CE4_GLA_like_6s, Putative catalytic NodB homology domain of gellan lyase and similar proteins | Back alignment and domain information |
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| >gnl|CDD|200578 cd10954, CE4_CtAXE_like, Catalytic NodB homology domain of Clostridium thermocellum acetylxylan esterase and its bacterial homologs | Back alignment and domain information |
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| >gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain | Back alignment and domain information |
|---|
| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
| >gnl|CDD|200566 cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA) | Back alignment and domain information |
|---|
| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
| >gnl|CDD|213022 cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213757 TIGR03006, pepcterm_polyde, polysaccharide deacetylase family protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|200569 cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200563 cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|213021 cd10916, CE4_PuuE_HpPgdA_like, Catalytic domain of bacterial PuuE allantoinases, Helicobacter pylori peptidoglycan deacetylase (HpPgdA), and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2 | Back alignment and domain information |
|---|
| >gnl|CDD|200575 cd10951, CE4_ClCDA_like, Catalytic NodB homology domain of Colletotrichum lindemuthianum chitin deacetylase and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223798 COG0726, CDA1, Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|234001 TIGR02764, spore_ybaN_pdaB, polysaccharide deacetylase family sporulation protein PdaB | Back alignment and domain information |
|---|
| >gnl|CDD|200574 cd10950, CE4_BsYlxY_like, Putative catalytic NodB homology domain of uncharacterized protein YlxY from Bacillus subtilis and its bacterial homologs | Back alignment and domain information |
|---|
| >gnl|CDD|213023 cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands | Back alignment and domain information |
|---|
| >gnl|CDD|200572 cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs | Back alignment and domain information |
|---|
| >gnl|CDD|200571 cd10947, CE4_SpPgdA_BsYjeA_like, Catalytic NodB homology domain of Streptococcus pneumoniae peptidoglycan deacetylase PgdA, Bacillus subtilis BsYjeA protein, and their bacterial homologs | Back alignment and domain information |
|---|
| >gnl|CDD|200576 cd10952, CE4_MrCDA_like, Catalytic NodB homology domain of Mucor rouxii chitin deacetylase and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|200582 cd10959, CE4_NodB_like_3, Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases | Back alignment and domain information |
|---|
| >gnl|CDD|200580 cd10956, CE4_BH1302_like, Putative catalytic NodB homology domain of uncharacterized BH1302 protein from Bacillus halodurans and its bacterial homologs | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| TIGR03212 | 297 | uraD_N-term-dom putative urate catabolism protein. | 100.0 | |
| PRK15394 | 296 | 4-deoxy-4-formamido-L-arabinose-phosphoundecapreno | 99.96 | |
| TIGR03006 | 265 | pepcterm_polyde polysaccharide deactylase family p | 99.92 | |
| TIGR02764 | 191 | spore_ybaN_pdaB polysaccharide deacetylase family | 99.9 | |
| TIGR02884 | 224 | spore_pdaA delta-lactam-biosynthetic de-N-acetylas | 99.89 | |
| TIGR02873 | 268 | spore_ylxY probable sporulation protein, polysacch | 99.88 | |
| PF01522 | 123 | Polysacc_deac_1: Polysaccharide deacetylase; Inter | 99.85 | |
| COG0726 | 267 | CDA1 Predicted xylanase/chitin deacetylase [Carboh | 99.76 | |
| PRK14581 | 672 | hmsF outer membrane N-deacetylase; Provisional | 99.5 | |
| PRK14582 | 671 | pgaB outer membrane N-deacetylase; Provisional | 99.48 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 98.95 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 98.85 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 98.53 | |
| PF09960 | 585 | DUF2194: Uncharacterized protein conserved in bact | 98.1 | |
| PF10096 | 243 | DUF2334: Uncharacterized protein conserved in bact | 97.97 | |
| PF01607 | 53 | CBM_14: Chitin binding Peritrophin-A domain; Inter | 97.86 | |
| COG3233 | 233 | Predicted deacetylase [General function prediction | 97.68 | |
| smart00494 | 56 | ChtBD2 Chitin-binding domain type 2. | 97.12 | |
| PF11959 | 133 | DUF3473: Domain of unknown function (DUF3473); Int | 97.01 | |
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 96.45 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 95.54 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 95.52 | |
| KOG1215|consensus | 877 | 94.9 | ||
| KOG1215|consensus | 877 | 94.87 | ||
| PF03065 | 360 | Glyco_hydro_57: Glycosyl hydrolase family 57; Inte | 94.77 | |
| COG1449 | 615 | Alpha-amylase/alpha-mannosidase [Carbohydrate tran | 94.56 | |
| PF04748 | 213 | Polysacc_deac_2: Divergent polysaccharide deacetyl | 93.84 | |
| PF15421 | 425 | Polysacc_deac_3: Putative polysaccharide deacetyla | 92.47 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 92.13 | |
| COG2861 | 250 | Uncharacterized protein conserved in bacteria [Fun | 81.38 |
| >TIGR03212 uraD_N-term-dom putative urate catabolism protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=277.22 Aligned_cols=224 Identities=18% Similarity=0.257 Sum_probs=181.8
Q ss_pred EEEeecCCCCCccHHHHHHHHhccCCCCCCCCceEEEEecccC--CChHHHHHHHHcCCeeeeCCCCCCCCccccCCCCH
Q psy16052 181 ITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKY--TNYSAVQELHRKGHEVAVHSITHNDDENFWSNATV 258 (476)
Q Consensus 181 V~lTFDdg~~~~~~~~~l~ll~~~~~np~~c~i~aTFFv~~~~--~~~~~v~~l~~~GHEIg~Hs~~H~~~~~~~~~~s~ 258 (476)
..+++-+..+..+.++++++|++ ++||+|||+++.. .+++++++|.++|||||+||++|... ..++.
T Consensus 66 ~~~s~~~YG~rvG~~RiLdlL~~-------~gv~aTffv~g~~~e~~P~~v~~i~~~GHEIg~Hg~~H~~~----~~ls~ 134 (297)
T TIGR03212 66 SMESLYEYGSRAGFWRLLRLFTE-------RGIPVTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWIDY----QDMDE 134 (297)
T ss_pred cchhhhhhcchhCHHHHHHHHHH-------cCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEeeccccCccc----ccCCH
Confidence 35556566667778999999999 9999999999864 34599999999999999999999875 46899
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCcccEEecCCcccCchHHHHHHHH-cCCeEeeecccCCCCCCCCCccccccCCCCcCC
Q psy16052 259 DDWAKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEE-QAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHG 337 (476)
Q Consensus 259 e~~~~ei~~~~~~l~~~~~i~g~~~~gfR~P~l~~~~~~~~~~l~~-~G~~Ydss~~~~~~~~p~~pytl~~~~~~~c~~ 337 (476)
++.+++|.++.++|+ .++|..|+|||++ ..+.+ ++++|++ .||+|+||+..+ +.|+|..+
T Consensus 135 ~~e~~~i~~s~~~i~---~~tG~~P~G~~~~--~~s~~-T~~LL~e~~Gf~Y~sd~~~d--D~Py~~~~----------- 195 (297)
T TIGR03212 135 AQEREHIAEAIRLHT---EVTGERPLGWYTG--RTSPN-TRRLVAEEGGFLYDADSYAD--DLPYWDEV----------- 195 (297)
T ss_pred HHHHHHHHHHHHHHH---HHhCCCCceEECC--CCChh-HHHHHHHhcCceEeCchhhc--CCCeEeec-----------
Confidence 999999999999999 5889999999975 55665 8999998 999999999976 34555332
Q ss_pred CCcCCCCCCCCeEEEeccccccCCCCCCCCCCCCCcccCCCCCCCChHHHHHHHHHHHHHHhccCC---cceEEeecchh
Q psy16052 338 NLQHCPTRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQNR---APLGLYFHAAW 414 (476)
Q Consensus 338 ~~~~cp~~~~~lweiP~~~~~~~~~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~f~~~y~~~r---~p~~i~~H~~w 414 (476)
...+++.||+++..++ ..|.. . ....++++++++|+++|+.+|+..+ ..|.|.+| ++
T Consensus 196 -------~~~~~l~lP~~~~~nD--~~~~~-~---------~~~~~~~~~~~~~~d~fd~l~~eg~~~~~~~~i~lH-p~ 255 (297)
T TIGR03212 196 -------AGRPQLIVPYTLDAND--MRFAT-P---------QGFNTGEQFFTYLRDAFDVLYAEGEGAPKMMSIGLH-CR 255 (297)
T ss_pred -------CCCCeEEEecccccCc--HHHHh-c---------cCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEecC-cc
Confidence 1124677999875432 11211 0 1125789999999999999997543 35789999 77
Q ss_pred hcCChHHHHHHHHHHHHHHhhCCCEEEEeHHHHHHHhhCCc
Q psy16052 415 LKNNPEFLDAFLYWVDEIIERHKDVYFVTMTQVIQWIQNPR 455 (476)
Q Consensus 415 ~~~~p~~~~al~~fl~~i~~~~~dV~fvT~~qi~~w~~~p~ 455 (476)
++|+|.|+.+|++||+||++ +++|||+|.+||++|++...
T Consensus 256 i~G~p~R~~~L~~~l~~i~~-~~~VW~at~~eIA~~~~~~~ 295 (297)
T TIGR03212 256 LVGRPGRIAALQRFLDYVQS-HDKVWVARRIDIARHWHETH 295 (297)
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCCEEEEcHHHHHHHHHHhC
Confidence 99999999999999999998 99999999999999986543
|
This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family. |
| >PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional | Back alignment and domain information |
|---|
| >TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB | Back alignment and domain information |
|---|
| >TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase | Back alignment and domain information |
|---|
| >TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family | Back alignment and domain information |
|---|
| >PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase | Back alignment and domain information |
|---|
| >COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14581 hmsF outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK14582 pgaB outer membrane N-deacetylase; Provisional | Back alignment and domain information |
|---|
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
| >PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein | Back alignment and domain information |
|---|
| >PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function | Back alignment and domain information |
|---|
| >PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain [] | Back alignment and domain information |
|---|
| >COG3233 Predicted deacetylase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00494 ChtBD2 Chitin-binding domain type 2 | Back alignment and domain information |
|---|
| >PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised | Back alignment and domain information |
|---|
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
| >KOG1215|consensus | Back alignment and domain information |
|---|
| >KOG1215|consensus | Back alignment and domain information |
|---|
| >PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
| >COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ | Back alignment and domain information |
|---|
| >PF15421 Polysacc_deac_3: Putative polysaccharide deacetylase; PDB: 4DWE_A | Back alignment and domain information |
|---|
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
| >COG2861 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-08
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTCDSENDPNRAPPCDPAVCVLPDCFC 161
C C DG CI R C+ ++DC DGSDE +C + C+ + C+ C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37 | Back alignment and structure |
|---|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45 | Back alignment and structure |
|---|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
| >3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} Length = 326 | Back alignment and structure |
|---|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
| >3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} Length = 300 | Back alignment and structure |
|---|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48 | Back alignment and structure |
|---|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
| >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Length = 311 | Back alignment and structure |
|---|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42 | Back alignment and structure |
|---|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39 | Back alignment and structure |
|---|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50 | Back alignment and structure |
|---|
| >2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A Length = 431 | Back alignment and structure |
|---|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217 | Back alignment and structure |
|---|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74 | Back alignment and structure |
|---|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47 | Back alignment and structure |
|---|
| >3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} Length = 321 | Back alignment and structure |
|---|
| >1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 Length = 240 | Back alignment and structure |
|---|
| >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Length = 247 | Back alignment and structure |
|---|
| >2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} Length = 254 | Back alignment and structure |
|---|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220 | Back alignment and structure |
|---|
| >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Length = 216 | Back alignment and structure |
|---|
| >3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A Length = 308 | Back alignment and structure |
|---|
| >2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans} Length = 230 | Back alignment and structure |
|---|
| >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Length = 195 | Back alignment and structure |
|---|
| >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Length = 254 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| 3qbu_A | 326 | Putative uncharacterized protein; metallo enzyme, | 100.0 | |
| 3s6o_A | 321 | Polysaccharide deacetylase family protein; ssgcid, | 100.0 | |
| 3rxz_A | 300 | Polysaccharide deacetylase; structural genomics, P | 100.0 | |
| 3cl6_A | 308 | PUUE allantoinase; URIC acid, nitrogen fixation, h | 100.0 | |
| 2cc0_A | 195 | Acetyl-xylan esterase; hydrolase, carbohydrate est | 99.91 | |
| 1ny1_A | 240 | Probable polysaccharide deacetylase PDAA; structur | 99.9 | |
| 2y8u_A | 230 | Chitin deacetylase; hydrolase; 1.99A {Emericella n | 99.9 | |
| 2iw0_A | 254 | Chitin deacetylase; hydrolase, chitin DE-N-acetyla | 99.9 | |
| 2w3z_A | 311 | Putative deacetylase; PGDA, glcnac DE-N-acetylase, | 99.9 | |
| 2vyo_A | 254 | ECU11_0510, chitooligosaccharide deacetylase; CE4 | 99.89 | |
| 2c71_A | 216 | Glycoside hydrolase, family 11\:clostridium cellul | 99.89 | |
| 2j13_A | 247 | Polysaccharide deacetylase; family 4, peptidoglyca | 99.89 | |
| 2c1i_A | 431 | Peptidoglycan glcnac deacetylase; carbohydrate est | 99.86 | |
| 3hft_A | 257 | WBMS, polysaccharide deacetylase involved in O-AN | 99.81 | |
| 3vus_A | 268 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; | 99.69 | |
| 4f9d_A | 618 | Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; | 99.55 | |
| 4hd5_A | 360 | Polysaccharide deacetylase; TIM barrel, hydrolase; | 99.51 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.44 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.39 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.34 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.31 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.17 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.16 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 99.12 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 99.1 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 99.01 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 98.99 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 98.98 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 98.98 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 98.94 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 98.94 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 98.89 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 98.86 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 98.85 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 98.82 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 98.82 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 98.8 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 98.74 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 98.64 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 98.58 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 98.58 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 98.56 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 98.4 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 98.32 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 98.31 | |
| 1dqc_A | 74 | Tachycitin; disulfide-rich, antimicrobial protein; | 98.19 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 97.95 | |
| 1k1x_A | 659 | 4-alpha-glucanotransferase; 2.40A {Thermococcus li | 97.6 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 97.29 | |
| 1wb0_A | 445 | Chitinase 1, chitotriosidase 1; cyclopentapeptide | 96.7 | |
| 2b5d_X | 528 | Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2. | 96.69 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 96.22 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 96.15 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 96.02 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 95.91 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 95.58 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 95.56 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 95.52 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 95.4 | |
| 4dwe_A | 480 | Uncharacterized protein; hypothetical protein, str | 95.23 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 95.2 | |
| 2nly_A | 245 | BH1492 protein, divergent polysaccharide deacetyla | 95.06 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 95.04 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 94.94 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 94.61 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 94.17 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 94.16 | |
| 2qv5_A | 261 | AGR_C_5032P, uncharacterized protein ATU2773; stru | 93.93 | |
| 3n98_A | 562 | Alpha-amylase, GH57 family; GH57 family member, br | 92.19 | |
| 3p0b_A | 540 | TT1467 protein; glycoside hydrolase GH57, glycogen | 92.02 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 90.73 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 89.8 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 86.93 |
| >3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=325.38 Aligned_cols=241 Identities=15% Similarity=0.222 Sum_probs=193.6
Q ss_pred ccHHHHHHHHhccCCCCCCCCceEEEEecccCC--ChHHHHHHHHcCCeeeeCCCCCCCCccccCCCCHHHHHHHHHHHH
Q psy16052 192 NNIALYKEMFNGKRKNPNGCDIKATFFVSHKYT--NYSAVQELHRKGHEVAVHSITHNDDENFWSNATVDDWAKEMAGMR 269 (476)
Q Consensus 192 ~~~~~~l~ll~~~~~np~~c~i~aTFFv~~~~~--~~~~v~~l~~~GHEIg~Hs~~H~~~~~~~~~~s~e~~~~ei~~~~ 269 (476)
.++++++++|++ +++++||||++... +++++++|+++|||||+||++|... ..++.+++++||.+++
T Consensus 74 ~~~~rlL~lL~~-------~~v~aTfFv~g~~~~~~p~~v~~i~~~GhEIg~H~~~H~~~----~~~s~~~~~~ei~~~~ 142 (326)
T 3qbu_A 74 VGIPRLLKLFKK-------YHLPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENP----IAMSTKQEEDVLLKSV 142 (326)
T ss_dssp THHHHHHHHHHH-------TTCCCEEECCHHHHHHCHHHHHHHHTTTCEEEBCCSSCCCG----GGSCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH-------cCCCEEEEEEhHHhhhCHHHHHHHHHcCCEEEeCCCCCcCh----hhCCHHHHHHHHHHHH
Confidence 456789999999 99999999998652 4599999999999999999999875 5689999999999999
Q ss_pred HHHHHhhcccCCcccEEecCCcccCchHHHHHHHHcCCeEeeecccCCCC-CCCCCcc------ccccCCCCcCCCCcCC
Q psy16052 270 IIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSN-PPLWPYT------MYFRMPHRCHGNLQHC 342 (476)
Q Consensus 270 ~~l~~~~~i~g~~~~gfR~P~l~~~~~~~~~~l~~~G~~Ydss~~~~~~~-~p~~pyt------l~~~~~~~c~~~~~~c 342 (476)
++|+ .++|..++|||+|+++.+.+ ++++|+++||.||||+..+ + .|+|+++ +++..+..|. ..++
T Consensus 143 ~~l~---~~~G~~p~~fr~P~g~~~~~-~~~~l~e~G~~ydss~~~~--D~~Py~~~~~~~~~~~d~~~~~~~w--~~P~ 214 (326)
T 3qbu_A 143 ELIK---DLTGKAPTGYVAPWWEFSNI-TNELLLKHGFKYDHSLMHN--DFTPYYVRVGDSWSKIDYSLEAKDW--MKPL 214 (326)
T ss_dssp HHHH---HHHSSCCCEECCGGGCCSSH-HHHHHHTTTCCEECCCCSC--SSSCEEEEECCBCCCCCTTSCGGGT--CCCC
T ss_pred HHHH---HHHCCCCcEEECCCCCCCHH-HHHHHHHcCCEEEeeccCC--CCCCeeeecCCccccccccccchhh--cccc
Confidence 9999 47889999999999999976 9999999999999999864 3 6777666 3444433332 1234
Q ss_pred CCC-CCCeEEEeccccccCCCCCCCCCCCCCcccCCCCCCCChHHHHHHHHHHHHHHhcc-CCcceEEeecchhhcCChH
Q psy16052 343 PTR-SHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQ-NRAPLGLYFHAAWLKNNPE 420 (476)
Q Consensus 343 p~~-~~~lweiP~~~~~~~~~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~f~~~y~~-~r~p~~i~~H~~w~~~~p~ 420 (476)
+.. ..++||||+++..+ |.|.|+.... + .+.....++++++++|+++|+++|++ ++++++|++|+. +.|+|.
T Consensus 215 ~~g~~~~l~eiP~~~~~~-D~p~~~f~~~-~---~~~~g~~~~~~~~~~l~~~Fd~~y~~~~~~~~~i~lH~~-~~g~p~ 288 (326)
T 3qbu_A 215 IRGVETNLVEIPANWYLD-DLPPMMFIKK-S---PNSFGFVSPRDIGQMWIDQFDWVYREMDYAVFSMTIHPD-VSARPQ 288 (326)
T ss_dssp BCCEEEEEEECCCCGGGB-SHHHHCCCTT-C---TTCCCCSCHHHHHHHHHHHHHHHHHHCSEEEEEEEECHH-HHTSHH
T ss_pred cCCCCCCeEEEcCccccC-cchhhhcccc-c---cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEECcc-ccCCHH
Confidence 333 35699999996332 2343332110 0 01112478999999999999999985 588999999954 678999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeHHHHHHHhhCCcchh
Q psy16052 421 FLDAFLYWVDEIIERHKDVYFVTMTQVIQWIQNPRTIT 458 (476)
Q Consensus 421 ~~~al~~fl~~i~~~~~dV~fvT~~qi~~w~~~p~~~~ 458 (476)
++++|++||+||++ +++|||||++|||+||+++.|.+
T Consensus 289 r~~~le~fl~~i~~-~~~Vw~~t~~eia~~~~~~~p~~ 325 (326)
T 3qbu_A 289 VLLMHEKIIEHINK-HEGVRWVTFNEIADDFLKRNPRK 325 (326)
T ss_dssp HHHHHHHHHHHHTT-STTEEECCHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHh-CCCEEEEcHHHHHHHHHhhCCCC
Confidence 99999999999988 99999999999999999988876
|
| >3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6 | Back alignment and structure |
|---|
| >3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A | Back alignment and structure |
|---|
| >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 | Back alignment and structure |
|---|
| >1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 | Back alignment and structure |
|---|
| >2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans} | Back alignment and structure |
|---|
| >2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 | Back alignment and structure |
|---|
| >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} | Back alignment and structure |
|---|
| >2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
| >2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A | Back alignment and structure |
|---|
| >2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 | Back alignment and structure |
|---|
| >2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A | Back alignment and structure |
|---|
| >3hft_A WBMS, polysaccharide deacetylase involved in O-AN biosynthesis; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
| >3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A* | Back alignment and structure |
|---|
| >4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus} | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 | Back alignment and structure |
|---|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
| >1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* | Back alignment and structure |
|---|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* | Back alignment and structure |
|---|
| >2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4 | Back alignment and structure |
|---|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >4dwe_A Uncharacterized protein; hypothetical protein, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.01A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7 | Back alignment and structure |
|---|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
| >2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A* | Back alignment and structure |
|---|
| >3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A | Back alignment and structure |
|---|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 476 | ||||
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 5e-09 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 5e-09 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 9e-09 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 1e-08 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 1e-08 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 1e-08 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 3e-08 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 1e-07 | |
| d2gtlo2 | 41 | g.12.1.1 (O:60-100) Extracellular hemoglobin linke | 2e-07 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 8e-07 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 1e-06 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 2e-06 | |
| d1dqca_ | 73 | g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple | 3e-06 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 3e-06 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 5e-06 | |
| d2iw0a1 | 220 | c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthra | 1e-05 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 1e-05 | |
| d2c71a1 | 204 | c.6.2.3 (A:480-683) Xylanase XynA C-terminal domai | 2e-05 | |
| d2c1ia1 | 196 | c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetyla | 3e-05 | |
| d2j13a1 | 235 | c.6.2.3 (A:1-235) Putative polysaccharide deacetyl | 5e-05 | |
| d2cc0a1 | 192 | c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomy | 5e-05 | |
| d1ny1a_ | 235 | c.6.2.3 (A:) Probable polysaccharide deacetylase P | 0.001 |
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (119), Expect = 5e-09
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 103 CQDGFLACGDGACIERGLFCNGEKDCNDGSDENTC 137
C C DG CI R C+ ++DC DGSDE +C
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73 | Back information, alignment and structure |
|---|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
| >d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Length = 220 | Back information, alignment and structure |
|---|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
| >d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Length = 204 | Back information, alignment and structure |
|---|
| >d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196 | Back information, alignment and structure |
|---|
| >d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} Length = 235 | Back information, alignment and structure |
|---|
| >d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} Length = 192 | Back information, alignment and structure |
|---|
| >d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} Length = 235 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| d1z7aa1 | 301 | Hypothetical protein PA1517 {Pseudomonas aeruginos | 100.0 | |
| d2cc0a1 | 192 | Acetyl-xylan esterase {Streptomyces lividans [TaxI | 99.91 | |
| d2iw0a1 | 220 | Chitin deacetylase {Bean anthracnose fungus (Colle | 99.91 | |
| d2c1ia1 | 196 | Peptidoglycan GlcNAc deacetylase C-terminal domain | 99.89 | |
| d2c71a1 | 204 | Xylanase XynA C-terminal domain {Clostridium therm | 99.88 | |
| d2j13a1 | 235 | Putative polysaccharide deacetylase BA0424 {Bacill | 99.88 | |
| d1ny1a_ | 235 | Probable polysaccharide deacetylase PdaA {Bacillus | 99.87 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 99.08 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 99.08 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 99.04 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.97 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 98.97 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 98.96 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 98.94 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 98.9 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 98.89 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 98.87 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 98.85 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 98.81 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 98.72 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 98.68 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 98.64 | |
| d1dqca_ | 73 | Tachycitin {Horseshoe crab (Tachypleus tridentatus | 98.27 | |
| d1k1xa3 | 310 | 4-alpha-glucanotransferase, N-terminal domain {Arc | 98.17 | |
| d2b5dx2 | 404 | Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 | 96.89 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 96.8 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 96.57 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 96.37 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 96.31 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 96.3 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 96.29 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 96.1 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 96.09 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 95.96 | |
| d1ufaa2 | 412 | Hypothetical protein TT1467, N-terminal domain {Th | 95.61 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 95.55 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 95.37 | |
| d2nlya1 | 224 | Hypothetical protein BH1492 {Bacillus halodurans [ | 95.04 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 94.97 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 94.91 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 94.55 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 94.42 |
| >d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: PA1517-like domain: Hypothetical protein PA1517 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6.5e-34 Score=279.65 Aligned_cols=233 Identities=18% Similarity=0.240 Sum_probs=184.7
Q ss_pred CCCCeEEEeecCCCCCccHHHHHHHHhccCCCCCCCCceEEEEecccCC--ChHHHHHHHHcCCeeeeCCCCCCCCcccc
Q psy16052 176 EVPQMITITFDDAINNNNIALYKEMFNGKRKNPNGCDIKATFFVSHKYT--NYSAVQELHRKGHEVAVHSITHNDDENFW 253 (476)
Q Consensus 176 ~~Pq~V~lTFDdg~~~~~~~~~l~ll~~~~~np~~c~i~aTFFv~~~~~--~~~~v~~l~~~GHEIg~Hs~~H~~~~~~~ 253 (476)
..+.+..+|+-+..+..+.++++++|++ ++|++||||++... .++++++|.++||||+.|||.|...
T Consensus 62 ~~~~~~~~s~~~YG~rvG~~Rll~ll~~-------~~i~aTff~~g~~ae~~P~~v~~i~~~GhEi~~HG~~h~~~---- 130 (301)
T d1z7aa1 62 GVRHMSMESLYEYGSRAGVWRLLKLFKR-------RNVPLTVFAVAMAAQRNPEVIRAMVADGHEICSHGYRWIDY---- 130 (301)
T ss_dssp TSCCHHHHHHHHHHHHTHHHHHHHHHHH-------TTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCC----
T ss_pred ccccchhhhhhhhhhhcchHHHHHHHHH-------hCCCcccchhHHHHHHChHHHHHHHHcCceeecCccccccc----
Confidence 3445555555555567778999999999 99999999998521 2399999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccCCcccEEecCCcccCchHHHHHHHHcCCeEeeecccCCCCCCCCCccccccCCC
Q psy16052 254 SNATVDDWAKEMAGMRIIAEKYANLSDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPH 333 (476)
Q Consensus 254 ~~~s~e~~~~ei~~~~~~l~~~~~i~g~~~~gfR~P~l~~~~~~~~~~l~~~G~~Ydss~~~~~~~~p~~pytl~~~~~~ 333 (476)
..++.++++++|.++.++|+ .++|.+++|||+|.+. ..+ +..+|+++||+|+||++.+ +.|+| +..
T Consensus 131 ~~l~~~~e~~~i~~~~~~l~---~~tG~~p~G~~~p~~~-~~~-t~~lL~e~Gf~Y~sd~~~d--D~Py~---~~~---- 196 (301)
T d1z7aa1 131 QYMDEAQEREHMLEAIRILT---ELTGQRPVGWYTGRTG-PNT-RRLVMEEGGFLYDSDTYDD--DLPYW---DPA---- 196 (301)
T ss_dssp TTCCHHHHHHHHHHHHHHHH---HHHSSCCCEECCSSCC-TTH-HHHHHHHCCCSEECCCCCC--SSCEE---CTT----
T ss_pred ccCCHHHHHHHHHHHHHHHH---HhccCCcccccCCCCC-Ccc-HHHHHHhcCCEEECCCCCC--CCccc---eec----
Confidence 56999999999999999999 5899999999999986 444 7789999999999999876 34543 111
Q ss_pred CcCCCCcCCCCCCCCeEEEeccccccCCCCCCCCCCCCCcccCCCCCCCChHHHHHHHHHHHHHHhccC---CcceEEee
Q psy16052 334 RCHGNLQHCPTRSHAVWEMVMNELDRREDPNFDEYLPGCAMVDSCSNILTGDQFYNFLNHNFDRHYDQN---RAPLGLYF 410 (476)
Q Consensus 334 ~c~~~~~~cp~~~~~lweiP~~~~~~~~~p~~~~~~~g~~~~d~~~~~~~~~~~~~~l~~~f~~~y~~~---r~p~~i~~ 410 (476)
.+...++++||+++..++ .+.+. . .+..+++++++++++.|+..|+.. +..|+|.+
T Consensus 197 ---------~~~~~~~l~iP~~~~~~D-~~~~~--~---------~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~l 255 (301)
T d1z7aa1 197 ---------STAEKPHLVIPYTLDTND-MRFTQ--V---------QGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGL 255 (301)
T ss_dssp ---------CCSSSCCEECCCCSSSBG-GGGGS--T---------TCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred ---------cCCCCCeEEeccccccch-hhhhh--c---------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEee
Confidence 112356999999875432 22111 1 123577899999999999998742 23578999
Q ss_pred cchhhcCChHHHHHHHHHHHHHHhhCCCEEEEeHHHHHHHhhCCcc
Q psy16052 411 HAAWLKNNPEFLDAFLYWVDEIIERHKDVYFVTMTQVIQWIQNPRT 456 (476)
Q Consensus 411 H~~w~~~~p~~~~al~~fl~~i~~~~~dV~fvT~~qi~~w~~~p~~ 456 (476)
| +|++|+|.|+.+|++||+||++ ++||||+|.+||++|++...|
T Consensus 256 H-P~i~G~P~Ri~~Le~~l~~i~~-~~dVW~at~~eIA~~~~~~~P 299 (301)
T d1z7aa1 256 H-CRLIGRPARMAALERFIQYAQS-HDKVWFARREDIARHWHREHP 299 (301)
T ss_dssp E-TTTTTSHHHHHHHHHHHHHHHT-SSSEEECCHHHHHHHHHHHSC
T ss_pred C-CcccCCHHHHHHHHHHHHHHHc-CCCEEEcCHHHHHHHHHHHCc
Confidence 9 8899999999999999999998 999999999999998854433
|
| >d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
| >d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} | Back information, alignment and structure |
|---|
| >d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
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| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
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| >d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
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| >d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
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| >d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
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| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
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