Psyllid ID: psy1606

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
MLHCQHLSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQVDPGLSPDGARCGDGKTKRDTVSKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKPKACA
ccEEEEEcccccEEEEEccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccccEEEcccHHHHHHHHHHHHHHcccccccccEEEEEccccccccEEEcEEccccccccccEEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccEEccccccccccccccccHHHHHHHHcccccccccccccccc
cccEEEEEEcccEEEEcccccccccEEEEEcccHHHHHHHHcccccccccccccccEEcccccccccccccHccccHHHcccccEEEEEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHcHHHcccccEEEEEEcccEcccEcEEccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccEEccEEEcccccccccccEEccHHHHHHHHHHHHHHccccccccccccc
MLHCQHLSEKLEYGIETVAILSHsflnpggfiipcRSAIVdlglnqvdpglspdgarcgdgktkrdtvskhdeirgpynanIKSRYLELVIVVDNRLYNlfnknsklvhRHCKDISNVINALYEKLNIFIALVGVVVWTEYdeitlnvngditLTNFLSYRKDrlvlshpndnaqlltgmtfsdgvvgkalkgpictyefsggvnvdhkNVVGLVATTVAHEmghnlgmehdttectcpsdrcimapssssvsptewsscsLEYLALSFdhgmdycmrnkpkaca
MLHCQHLSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQVDPglspdgarcgdgktkrdtvskhdeirgpynaniksRYLELVIVVDNRLYNLFNknsklvhrHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEfsggvnvdhKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKPKACA
MLHCQHLSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQVDPGLSPDGARCGDGKTKRDTVSKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPssssvsptewsscsLEYLALSFDHGMDYCMRNKPKACA
******LSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQV***************************RGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCI***********EWSSCSLEYLALSFDHGMDYCM********
MLHCQHLSEKLEYGIETVAI***********IIPCRSAIVDLGLNQVDPGLS******************************KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKPK***
MLHCQHLSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQVDPGLSPDGAR***********SKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIM**************CSLEYLALSFDHGMDYCMRNKPKACA
MLHCQHLSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQVDPGLSPDGARCGDG*TKRDTVSKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLHCQHLSEKLEYGIETVAILSHSFLNPGGFIIPCRSAIVDLGLNQVDPGLSPDGARCGDGKTKRDTVSKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKPKACA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
Q61824 903 Disintegrin and metallopr yes N/A 0.789 0.249 0.370 2e-35
A8QL49 614 Zinc metalloproteinase-di N/A N/A 0.691 0.320 0.361 6e-35
Q8AWI5 610 Zinc metalloproteinase-di N/A N/A 0.691 0.322 0.380 2e-34
Q1PHZ4 547 Zinc metalloproteinase-di N/A N/A 0.691 0.360 0.375 2e-34
Q9JLN6 793 Disintegrin and metallopr no N/A 0.691 0.248 0.385 4e-34
A8QL48 605 Zinc metalloproteinase-di N/A N/A 0.684 0.322 0.346 5e-34
Q9XSL6 776 Disintegrin and metallopr N/A N/A 0.691 0.253 0.380 6e-34
Q076D1 421 Zinc metalloproteinase-di N/A N/A 0.691 0.467 0.380 2e-33
B7U492411 Snake venom metalloprotei N/A N/A 0.719 0.498 0.370 3e-33
Q9I9R4198 Snake venom metalloprotei N/A N/A 0.635 0.914 0.375 4e-33
>sp|Q61824|ADA12_MOUSE Disintegrin and metalloproteinase domain-containing protein 12 OS=Mus musculus GN=Adam12 PE=1 SV=2 Back     alignment and function desciption
 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 135/248 (54%), Gaps = 23/248 (9%)

Query: 41  DLGLNQVDPGLSPDGARCGDGKTKRDTVSKHDEIRGPYNANIKSRYLELVIVVDNRLYNL 100
           +L +  V PG S   AR    + KR+T+               ++Y+ELVIV DNR +  
Sbjct: 185 NLTMEDVSPGTSQMRAR----RHKRETLKM-------------TKYVELVIVADNREFQR 227

Query: 101 FNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSY 160
             K+ + V +   +I+N ++  Y  LNI I LVGV VW + D+ +++ +   +L  FL +
Sbjct: 228 QGKDLEKVKQRLIEIANHVDKFYRPLNIRIVLVGVEVWNDIDKCSISQDPFTSLHEFLDW 287

Query: 161 RKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVA 220
           RK +L+    +DNAQL++G+ F    +G A    +CT E SGGV +DH +     A T+A
Sbjct: 288 RKIKLLPRKSHDNAQLISGVYFQGTTIGMAPIMSMCTAEQSGGVVMDHSDSPLGAAVTLA 347

Query: 221 HEMGHNLGMEHDTTE--CTC----PSDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMD 274
           HE+GHN GM HDT E  C+C        CIM PS+    P  +SSCS + L  S + GM 
Sbjct: 348 HELGHNFGMNHDTLERGCSCRMAAEKGGCIMNPSTGFPFPMVFSSCSRKDLEASLEKGMG 407

Query: 275 YCMRNKPK 282
            C+ N P+
Sbjct: 408 MCLFNLPE 415
Involved in skeletal muscle regeneration, specifically at the onset of cell fusion. Also involved in macrophage-derived giant cells (MGC) and osteoclast formation from mononuclear precursors.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|A8QL49|VM3_BUNMU Zinc metalloproteinase-disintegrin BmMP OS=Bungarus multicinctus PE=2 SV=1 Back     alignment and function description
>sp|Q8AWI5|VM3HA_GLOHA Zinc metalloproteinase-disintegrin halysase OS=Gloydius halys PE=1 SV=1 Back     alignment and function description
>sp|Q1PHZ4|VM3B1_BOTJR Zinc metalloproteinase-disintegrin BjussuMP-1 (Fragment) OS=Bothrops jararacussu PE=1 SV=1 Back     alignment and function description
>sp|Q9JLN6|ADA28_MOUSE Disintegrin and metalloproteinase domain-containing protein 28 OS=Mus musculus GN=Adam28 PE=1 SV=3 Back     alignment and function description
>sp|A8QL48|VM3_BUNFA Zinc metalloproteinase-disintegrin BfMP (Fragment) OS=Bungarus fasciatus PE=2 SV=1 Back     alignment and function description
>sp|Q9XSL6|ADA28_MACFA Disintegrin and metalloproteinase domain-containing protein 28 OS=Macaca fascicularis GN=ADAM28 PE=2 SV=1 Back     alignment and function description
>sp|Q076D1|VM31_CRODU Zinc metalloproteinase-disintegrin crotastatin OS=Crotalus durissus terrificus PE=2 SV=1 Back     alignment and function description
>sp|B7U492|VM1V1_AGKPL Snake venom metalloproteinase VMP1 OS=Agkistrodon piscivorus leucostoma PE=2 SV=1 Back     alignment and function description
>sp|Q9I9R4|VM1N_BOTPA Snake venom metalloproteinase neuwiedase (Fragment) OS=Bothropoides pauloensis PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
91093697 1457 PREDICTED: similar to ADAM metalloprotea 0.768 0.150 0.689 4e-89
270012994 1436 hypothetical protein TcasGA2_TC010657 [T 0.768 0.152 0.689 4e-89
380016282 1609 PREDICTED: uncharacterized protein LOC10 0.740 0.131 0.687 2e-85
350403954 1643 PREDICTED: hypothetical protein LOC10074 0.740 0.128 0.687 2e-85
340725443 1643 PREDICTED: hypothetical protein LOC10064 0.740 0.128 0.682 1e-84
383851759 1635 PREDICTED: uncharacterized protein LOC10 0.733 0.127 0.688 1e-84
328709070 1249 PREDICTED: disintegrin and metalloprotei 0.757 0.172 0.686 1e-84
332018100 1605 Disintegrin and metalloproteinase domain 0.733 0.130 0.679 7e-84
307172238 855 ADAM 12 [Camponotus floridanus] 0.733 0.244 0.688 2e-83
328783324 585 PREDICTED: disintegrin and metalloprotei 0.740 0.360 0.682 4e-83
>gi|91093697|ref|XP_966486.1| PREDICTED: similar to ADAM metalloprotease, partial [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 151/219 (68%), Positives = 178/219 (81%)

Query: 65  RDTVSKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYE 124
           +    ++  +RGPYNAN KS+Y+ELV+VVDNR Y    +++  V  HCK I+N+IN LY 
Sbjct: 199 KRAAEQNSAVRGPYNANKKSKYVELVLVVDNREYKELGESTSKVEHHCKTIANIINGLYA 258

Query: 125 KLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSD 184
            LNIFIALVGVV+WTE+DEI+ + NGD TLT+FL YR+++LV  HPNDNAQLLT   F +
Sbjct: 259 PLNIFIALVGVVIWTEHDEISFSPNGDTTLTSFLHYRRNKLVKEHPNDNAQLLTKYNFDN 318

Query: 185 GVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCI 244
           GVVGKALKGPICTYE+SGGVN DH  VVGLVATTVAHEMGHN GMEHDT ECTCP DRCI
Sbjct: 319 GVVGKALKGPICTYEYSGGVNTDHSPVVGLVATTVAHEMGHNFGMEHDTNECTCPDDRCI 378

Query: 245 MAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKPKA 283
           MAPSSS+V+PT WSSCSL YL L+F HGMDYC++NKP A
Sbjct: 379 MAPSSSTVAPTHWSSCSLNYLLLAFTHGMDYCLKNKPTA 417

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270012994|gb|EFA09442.1| hypothetical protein TcasGA2_TC010657 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|380016282|ref|XP_003692116.1| PREDICTED: uncharacterized protein LOC100866447 [Apis florea] Back     alignment and taxonomy information
>gi|350403954|ref|XP_003486962.1| PREDICTED: hypothetical protein LOC100747922 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340725443|ref|XP_003401079.1| PREDICTED: hypothetical protein LOC100643666 [Bombus terrestris] Back     alignment and taxonomy information
>gi|383851759|ref|XP_003701399.1| PREDICTED: uncharacterized protein LOC100883390 [Megachile rotundata] Back     alignment and taxonomy information
>gi|328709070|ref|XP_001952686.2| PREDICTED: disintegrin and metalloproteinase domain-containing protein 12-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332018100|gb|EGI58714.1| Disintegrin and metalloproteinase domain-containing protein 12 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307172238|gb|EFN63755.1| ADAM 12 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328783324|ref|XP_394078.4| PREDICTED: disintegrin and metalloproteinase domain-containing protein 12-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
FB|FBgn0265140 1407 Meltrin "Meltrin" [Drosophila 0.775 0.157 0.556 1.2e-65
WB|WBGene00000074 952 adm-2 [Caenorhabditis elegans 0.687 0.205 0.376 2.3e-33
UNIPROTKB|A8QL49 614 A8QL49 "Zinc metalloproteinase 0.701 0.325 0.357 5.5e-32
UNIPROTKB|F1NU67439 ADAM28 "Uncharacterized protei 0.578 0.375 0.416 1.6e-31
ZFIN|ZDB-GENE-070809-4 975 adam15 "a disintegrin and meta 0.691 0.202 0.380 1.6e-31
ZFIN|ZDB-GENE-070808-1 819 adam8b "a disintegrin and meta 0.705 0.245 0.382 2.9e-31
UNIPROTKB|F1NU65 804 ADAM28 "Uncharacterized protei 0.705 0.25 0.367 4.6e-31
UNIPROTKB|A8QL48 605 A8QL48 "Zinc metalloproteinase 0.568 0.267 0.361 6.5e-31
UNIPROTKB|F1NW99 819 ADAM12 "Uncharacterized protei 0.785 0.273 0.362 2.1e-30
UNIPROTKB|E9PTQ3 718 Adam28 "Protein Adam28" [Rattu 0.873 0.346 0.314 8.7e-30
FB|FBgn0265140 Meltrin "Meltrin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 679 (244.1 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 123/221 (55%), Positives = 160/221 (72%)

Query:    62 KTKRDTVSKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINA 121
             + +R        IRGPYNAN  S Y+ELVIVVDN++Y  F +N+K VH++CK I+N+INA
Sbjct:   245 RKRRQADDSSQLIRGPYNANKYSSYVELVIVVDNKVYKNFQENTKKVHQYCKGIANIINA 304

Query:   122 LYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMT 181
             LY  LNIF+ALVGVV+W E +EI  + +GD+TL NFL+YR  +LVL HPNDNAQLLT   
Sbjct:   305 LYVPLNIFVALVGVVIWNESNEIEFSSDGDLTLRNFLNYRSTKLVLDHPNDNAQLLTKEN 364

Query:   182 FSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSD 241
             F+ GVVGKALKGPICTYE+SGGV++ H     +VATT+AHEMGHN GMEHDT++C C  +
Sbjct:   365 FAGGVVGKALKGPICTYEYSGGVSMQHSPNPAMVATTMAHEMGHNFGMEHDTSDCHCRDE 424

Query:   242 RCIMAPXXXXXXXXXXXXXXLEYLALSFDHGMDYCMRNKPK 282
             +C+MA               ++ L ++F  GM+YC+RNKP+
Sbjct:   425 KCVMAASSTSFIPVNWSSCSIDQLTIAFSRGMNYCLRNKPE 465
GO:0008270 "zinc ion binding" evidence=IEA
GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISS;IDA
GO:0004222 "metalloendopeptidase activity" evidence=IDA
GO:0016021 "integral to membrane" evidence=ISS
GO:0042802 "identical protein binding" evidence=IPI
GO:0051259 "protein oligomerization" evidence=IDA
WB|WBGene00000074 adm-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|A8QL49 A8QL49 "Zinc metalloproteinase-disintegrin BmMP" [Bungarus multicinctus (taxid:8616)] Back     alignment and assigned GO terms
UNIPROTKB|F1NU67 ADAM28 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070809-4 adam15 "a disintegrin and metalloproteinase domain 15" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070808-1 adam8b "a disintegrin and metalloproteinase domain 8b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NU65 ADAM28 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A8QL48 A8QL48 "Zinc metalloproteinase-disintegrin BfMP" [Bungarus fasciatus (taxid:8613)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW99 ADAM12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PTQ3 Adam28 "Protein Adam28" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
cd04269194 cd04269, ZnMc_adamalysin_II_like, Zinc-dependent m 9e-75
pfam01421198 pfam01421, Reprolysin, Reprolysin (M12B) family zi 1e-65
cd04267192 cd04267, ZnMc_ADAM_like, Zinc-dependent metallopro 5e-29
cd04273207 cd04273, ZnMc_ADAMTS_like, Zinc-dependent metallop 2e-25
pfam13688193 pfam13688, Peptidase_M84, Metallo-peptidase family 2e-14
cd00203167 cd00203, ZnMc, Zinc-dependent metalloprotease 6e-14
pfam13582123 pfam13582, Reprolysin_3, Metallo-peptidase family 5e-13
cd04272220 cd04272, ZnMc_salivary_gland_MPs, Zinc-dependent m 5e-10
pfam13574173 pfam13574, Reprolysin_2, Metallo-peptidase family 1e-08
cd04271228 cd04271, ZnMc_ADAM_fungal, Zinc-dependent metallop 1e-07
cd04270244 cd04270, ZnMc_TACE_like, Zinc-dependent metallopro 2e-06
pfam13583195 pfam13583, Reprolysin_4, Metallo-peptidase family 3e-06
cd11375173 cd11375, Peptidase_M54, Peptidase family M54, also 6e-05
cd04276197 cd04276, ZnMc_MMP_like_2, Zinc-dependent metallopr 4e-04
COG1913181 COG1913, COG1913, Predicted Zn-dependent proteases 5e-04
smart00608137 smart00608, ACR, ADAM Cysteine-Rich Domain 0.002
>gnl|CDD|239797 cd04269, ZnMc_adamalysin_II_like, Zinc-dependent metalloprotease; adamalysin_II_like subfamily Back     alignment and domain information 
 Score =  226 bits (578), Expect = 9e-75
 Identities = 84/195 (43%), Positives = 119/195 (61%), Gaps = 1/195 (0%)

Query: 85  RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
           +Y+ELV+VVDN LY  +  N   V +   +I N+++++Y  LNI + LVG+ +WT+ D+I
Sbjct: 1   KYVELVVVVDNSLYKKYGSNLSKVRQRVIEIVNIVDSIYRPLNIRVVLVGLEIWTDKDKI 60

Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
           +++ +   TL  FL +++  L+   P+DNAQLLTG  F    VG A  G +C+ ++SGGV
Sbjct: 61  SVSGDAGETLNRFLDWKRSNLLPRKPHDNAQLLTGRDFDGNTVGLAYVGGMCSPKYSGGV 120

Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
             DH   + L A T+AHE+GHNLGMEHD   CTC    CIMAPS SS     +S+CS E 
Sbjct: 121 VQDHSRNLLLFAVTMAHELGHNLGMEHDDGGCTCGRSTCIMAPSPSS-LTDAFSNCSYED 179

Query: 265 LALSFDHGMDYCMRN 279
                  G   C+ N
Sbjct: 180 YQKFLSRGGGQCLLN 194

Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. Length = 194
>gnl|CDD|216491 pfam01421, Reprolysin, Reprolysin (M12B) family zinc metalloprotease Back     alignment and domain information
>gnl|CDD|239795 cd04267, ZnMc_ADAM_like, Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup Back     alignment and domain information
>gnl|CDD|239801 cd04273, ZnMc_ADAMTS_like, Zinc-dependent metalloprotease, ADAMTS_like subgroup Back     alignment and domain information
>gnl|CDD|222320 pfam13688, Peptidase_M84, Metallo-peptidase family M84 Back     alignment and domain information
>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease Back     alignment and domain information
>gnl|CDD|222240 pfam13582, Reprolysin_3, Metallo-peptidase family M12B Reprolysin-like Back     alignment and domain information
>gnl|CDD|239800 cd04272, ZnMc_salivary_gland_MPs, Zinc-dependent metalloprotease, salivary_gland_MPs Back     alignment and domain information
>gnl|CDD|222233 pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like Back     alignment and domain information
>gnl|CDD|239799 cd04271, ZnMc_ADAM_fungal, Zinc-dependent metalloprotease, ADAM_fungal subgroup Back     alignment and domain information
>gnl|CDD|239798 cd04270, ZnMc_TACE_like, Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information
>gnl|CDD|222241 pfam13583, Reprolysin_4, Metallo-peptidase family M12B Reprolysin-like Back     alignment and domain information
>gnl|CDD|213029 cd11375, Peptidase_M54, Peptidase family M54, also called archaemetzincins or archaelysins Back     alignment and domain information
>gnl|CDD|239803 cd04276, ZnMc_MMP_like_2, Zinc-dependent metalloprotease; MMP_like sub-family 2 Back     alignment and domain information
>gnl|CDD|224825 COG1913, COG1913, Predicted Zn-dependent proteases [General function prediction only] Back     alignment and domain information
>gnl|CDD|214743 smart00608, ACR, ADAM Cysteine-Rich Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
KOG3607|consensus 716 100.0
PF01421199 Reprolysin: Reprolysin (M12B) family zinc metallop 100.0
cd04269194 ZnMc_adamalysin_II_like Zinc-dependent metalloprot 100.0
cd04273207 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, A 100.0
cd04272220 ZnMc_salivary_gland_MPs Zinc-dependent metalloprot 100.0
cd04267192 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADA 100.0
cd04271228 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, A 100.0
cd04270244 ZnMc_TACE_like Zinc-dependent metalloprotease; TAC 100.0
KOG3538|consensus 845 99.97
KOG3658|consensus 764 99.97
PF13688196 Reprolysin_5: Metallo-peptidase family M12; PDB: 2 99.96
PF13583206 Reprolysin_4: Metallo-peptidase family M12B Reprol 99.91
cd00203167 ZnMc Zinc-dependent metalloprotease. This super-fa 99.9
PF13574173 Reprolysin_2: Metallo-peptidase family M12B Reprol 99.9
PF13582124 Reprolysin_3: Metallo-peptidase family M12B Reprol 99.79
PRK13267179 archaemetzincin-like protein; Reviewed 98.94
PF07998194 Peptidase_M54: Peptidase family M54; InterPro: IPR 98.39
PF01562131 Pep_M12B_propep: Reprolysin family propeptide; Int 98.02
COG1913181 Predicted Zn-dependent proteases [General function 97.93
cd04275225 ZnMc_pappalysin_like Zinc-dependent metalloproteas 97.72
PF00413154 Peptidase_M10: Matrixin This Prosite motif covers 97.72
cd04268165 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_ 97.54
cd04279156 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM 97.27
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 97.24
cd04278157 ZnMc_MMP Zinc-dependent metalloprotease, matrix me 97.21
PF05548314 Peptidase_M11: Gametolysin peptidase M11; InterPro 96.88
PF02031132 Peptidase_M7: Streptomyces extracellular neutral p 96.67
smart00235140 ZnMc Zinc-dependent metalloprotease. Neutral zinc 96.57
PF05572154 Peptidase_M43: Pregnancy-associated plasma protein 96.27
cd04277186 ZnMc_serralysin_like Zinc-dependent metalloproteas 96.08
cd04276197 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MM 95.78
cd04327198 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM 94.78
PF10462305 Peptidase_M66: Peptidase M66; InterPro: IPR019503 94.39
cd04283182 ZnMc_hatching_enzyme Zinc-dependent metalloproteas 94.12
cd04281200 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1 93.75
cd04280180 ZnMc_astacin_like Zinc-dependent metalloprotease, 93.67
) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400191 Astacin: Astacin (Peptidase family M12A) This Pros 93.35
KOG1565|consensus 469 93.27
cd04282230 ZnMc_meprin Zinc-dependent metalloprotease, meprin 92.62
TIGR03296286 M6dom_TIGR03296 M6 family metalloprotease domain. 91.91
smart00608137 ACR ADAM Cysteine-Rich Domain. 89.63
COG3824136 Predicted Zn-dependent protease [General function 88.9
KOG3714|consensus 411 88.81
PF01431206 Peptidase_M13: Peptidase family M13 This is family 88.5
PF12044423 Metallopep: Putative peptidase family; InterPro: I 88.47
PF09471264 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019 87.3
KOG3624|consensus687 84.17
PF0626297 DUF1025: Possibl zinc metallo-peptidase; InterPro: 84.16
PF12725318 DUF3810: Protein of unknown function (DUF3810); In 83.65
PF11350203 DUF3152: Protein of unknown function (DUF3152); In 83.64
PF06114122 DUF955: Domain of unknown function (DUF955); Inter 83.54
KOG4525|consensus 614 82.89
COG2856213 Predicted Zn peptidase [Amino acid transport and m 81.5
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 80.27
>KOG3607|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-55  Score=427.75  Aligned_cols=281  Identities=33%  Similarity=0.499  Sum_probs=245.0

Q ss_pred             CcccccccccccCCcceEEEeecccccCC--------ceEEeccCcc-ccccccccCCCCCC-CCCCCCCCCccccc---
Q psy1606           1 MLHCQHLSEKLEYGIETVAILSHSFLNPG--------GFIIPCRSAI-VDLGLNQVDPGLSP-DGARCGDGKTKRDT---   67 (285)
Q Consensus         1 ~~~c~y~g~~~~~~~~~v~~~~~~~~~~~--------~~i~p~~~~~-~~~~l~~~~~~~~~-~~~~Cg~~~~~~~~---   67 (285)
                      +.||||||++++++.|.||||||+|+ +|        |.|||++.+. +.+.+++.++.... ....||..+..+..   
T Consensus        93 ~~~C~YqG~v~g~~~S~vslStC~Gl-~g~~~~~~~~Y~Iepl~~s~~f~h~iy~~~~~~~~~~~~~~g~~~~~~~~~~~  171 (716)
T KOG3607|consen   93 QDHCYYQGYIEGEPDSFVSLSTCSGL-RGLFLFENISYSIEPLEGSDSFEHLIYKLLSLETDNSALVCGHQEAHIITKQM  171 (716)
T ss_pred             cccceeeeEeccccCceEEEEeccCc-ceeEEECceeEEEEECCCCCCcceeeeccccccccccccccccchhhcccccc
Confidence            57999999999999999999999999 44        9999999664 44455555554433 35789976443321   


Q ss_pred             ----ccccccccCCCCCcccceEEEEEEEEehHHHHHhcCChHHHHHHHHHHHHHHHhhcccccEEEEEEEEEEecCCCc
Q psy1606          68 ----VSKHDEIRGPYNANIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDE  143 (285)
Q Consensus        68 ----~~~~~~~~~~~~~~~~~~~vel~vv~D~~~~~~~~~n~~~~~~~v~~~~n~v~~iy~~~~i~v~l~~l~iw~~~~~  143 (285)
                          ....+..+.+..++.++||||++||+|+..|++++.+..++.++++.++|++|++|++++++|+|+++|+|+++|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~kyvEl~vV~D~~~~~~~~~~~~~v~~~~~~vvn~~d~~y~~lni~i~lv~lE~Wt~~dk  251 (716)
T KOG3607|consen  172 ELPLRSKRQERREKRTVIEHTKYVELYVVVDNDLYKKYGSNLSKVRSFAKEVVNLVDSIYKQLNIRIVLVGLEIWTDGNK  251 (716)
T ss_pred             cccCcccccccccccccccccceEEEEEEEehHHHHHccccHHHHHHHHHHhhhHHhhhHhhccceEEEEEEEecCCCCe
Confidence                1112333335788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCHHHHHHHHHHhhhhccCCCCCCCceeeeeeeecCCCceeccccCCCCcccccCceeecCCCchhHHHHHHHHHh
Q psy1606         144 ITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEM  223 (285)
Q Consensus       144 ~~~~~~~~~~l~~f~~w~~~~~~~~~~~D~a~llt~~~~~~~~~G~A~~g~~C~~~~~~~v~~~~~~~~~~~a~~~AHEl  223 (285)
                      +.+++++..+|.+|..|++..+..+.+||.|+|+++..+.+.++|+||+++||++.+++||+.+++..+...|.|+||||
T Consensus       252 i~~~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv~~~~~~~~~~~a~v~Ahel  331 (716)
T KOG3607|consen  252 IDVSEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGVNKFHSDILLAFAVVLAHEL  331 (716)
T ss_pred             ecccccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccceeecCcccchhHHHHHHHHH
Confidence            99989999999999999998888888999999999988889999999999999999999999999888888999999999


Q ss_pred             hhhcCCCCCCCCCCCC-CCCcccCCCCCCCCCCccCccCHHHHHhHhccCccccccccCc
Q psy1606         224 GHNLGMEHDTTECTCP-SDRCIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKPK  282 (285)
Q Consensus       224 GH~lG~~HD~~~c~C~-~~~cIM~~~~~~~~~~~fS~CS~~~~~~~l~~~~~~CL~~~p~  282 (285)
                      ||+|||.||...|.|+ ...|||........+..||+||+++|+.++..+++.||+|.|.
T Consensus       332 gH~lGm~hD~~~c~C~~~~~CiM~~~~~~~~~~~FS~CS~~~~~~~~~~~~~~cl~n~p~  391 (716)
T KOG3607|consen  332 GHNLGMIHDESSCSCPSSGLCIMPEETGFYIPKKFSNCSYQDFESFLLKGGGSCLLNLPS  391 (716)
T ss_pred             HhhcCcccccccccCCCCCccccccccCcCcccccccchHHHHHHHHhcCCcceEecCCC
Confidence            9999999999999996 7889994444446789999999999999999999999999654

>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site Back     alignment and domain information
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily Back     alignment and domain information
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup Back     alignment and domain information
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs Back     alignment and domain information
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup Back     alignment and domain information
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup Back     alignment and domain information
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information
>KOG3538|consensus Back     alignment and domain information
>KOG3658|consensus Back     alignment and domain information
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B Back     alignment and domain information
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like Back     alignment and domain information
>cd00203 ZnMc Zinc-dependent metalloprotease Back     alignment and domain information
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A Back     alignment and domain information
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C Back     alignment and domain information
>PRK13267 archaemetzincin-like protein; Reviewed Back     alignment and domain information
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01562 Pep_M12B_propep: Reprolysin family propeptide; InterPro: IPR002870 This signature covers the region of the propeptide for members of the MEROPS peptidase family M12B (clan MA(M), adamalysin family) Back     alignment and domain information
>COG1913 Predicted Zn-dependent proteases [General function prediction only] Back     alignment and domain information
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily Back     alignment and domain information
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site Back     alignment and domain information
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily Back     alignment and domain information
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1 Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family Back     alignment and domain information
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00235 ZnMc Zinc-dependent metalloprotease Back     alignment and domain information
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily Back     alignment and domain information
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2 Back     alignment and domain information
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3 Back     alignment and domain information
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily Back     alignment and domain information
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily Back     alignment and domain information
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site Back     alignment and domain information
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site Back     alignment and domain information
>KOG1565|consensus Back     alignment and domain information
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily Back     alignment and domain information
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain Back     alignment and domain information
>smart00608 ACR ADAM Cysteine-Rich Domain Back     alignment and domain information
>COG3824 Predicted Zn-dependent protease [General function prediction only] Back     alignment and domain information
>KOG3714|consensus Back     alignment and domain information
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification Back     alignment and domain information
>PF12044 Metallopep: Putative peptidase family; InterPro: IPR021917 This family of proteins is functionally uncharacterised Back     alignment and domain information
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG3624|consensus Back     alignment and domain information
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function Back     alignment and domain information
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised Back     alignment and domain information
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function Back     alignment and domain information
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function Back     alignment and domain information
>KOG4525|consensus Back     alignment and domain information
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
1iag_A202 First Structure Of A Snake Venom Metalloproteinase: 1e-32
2aig_P202 Adamalysin Ii With Peptidomimetic Inhibitor Pol647 2e-32
4aig_A201 Adamalysin Ii With Phosphonate Inhibitor Length = 2 2e-32
3k7l_A 422 Structures Of Two Elapid Snake Venom Metalloproteas 6e-32
2ero_A 427 Crystal Structure Of Vascular Apoptosis-inducing Pr 8e-32
3k7n_A 397 Structures Of Two Elapid Snake Venom Metalloproteas 3e-30
1qua_A197 Crystal Structure Of Acutolysin-c, A Hemorrhagic To 4e-30
1dth_A203 Metalloprotease Length = 203 9e-30
1htd_A202 Structural Interaction Of Natural And Synthetic Inh 1e-29
4dd8_A208 Adam-8 Metalloproteinase Domain With Bound Batimast 3e-29
1r54_A214 Crystal Structure Of The Catalytic Domain Of Human 5e-28
1wni_A201 Crystal Structure Of H2-Proteinase Length = 201 4e-27
1bud_A197 Acutolysin A From Snake Venom Of Agkistrodon Acutus 4e-27
1bsw_A197 Acutolysin A From Snake Venom Of Agkistrodon Acutus 4e-27
3gbo_A200 Crystal Structure Of Bmoompalpha-I, A Non-Hemorrhag 4e-27
3hdb_A 417 Crystal Structure Of Aahiv, A Metalloproteinase Fro 1e-26
1nd1_A202 Amino Acid Sequence And Crystal Structure Of Bap1, 1e-26
2w12_A202 High-Resolution Crystal Structure Of The P-I Snake 2e-26
1kuf_A203 High-Resolution Crystal Structure Of A Snake Venom 3e-26
3dsl_B 419 The Three-Dimensional Structure Of Bothropasin, The 4e-26
2dw0_A 419 Crystal Structure Of Vap2 From Crotalus Atrox Venom 1e-25
1kug_A203 Crystal Structure Of A Taiwan Habu Venom Metallopro 1e-25
1yp1_A202 Crystal Structure Of A Non-hemorrhagic Fibrin(ogen) 2e-25
2e3x_A 427 Crystal Structure Of Russell's Viper Venom Metallop 3e-20
3g5c_A 510 Structural And Biochemical Studies On The Ectodomai 1e-13
2rjq_A 378 Crystal Structure Of Adamts5 With Inhibitor Bound L 8e-07
3hy7_A221 Crystal Structure Of The Catalytic Domain Of Adamts 1e-05
3ljt_A218 Crystal Structure Of The Catalytic Domain Of Adamts 1e-05
3b8z_A217 High Resolution Crystal Structure Of The Catalytic 1e-05
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A Prototype For Matrix Metalloproteinases(Slash)collagenases Length = 202 Back     alignment and structure 
Iteration: 1

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 107/201 (53%)
Query: 81  NIKSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTE 140
           N+  RY+ELV+V D R++  +N +  ++     +I N+IN  Y  LNI ++L  + +W+ 
Sbjct: 2   NLPQRYIELVVVADRRVFMKYNSDLNIIRTRVHEIVNIINKFYRSLNIRVSLTDLEIWSG 61
Query: 141 YDEITLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEF 200
            D IT+  +   TL +F  +R+  L++   +DNAQLLT + F   ++GKA    +C    
Sbjct: 62  QDFITIQSSSSNTLNSFGEWRERVLLIWKRHDNAQLLTAINFEGKIIGKAYTSSMCNPRS 121
Query: 201 SGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPXXXXXXXXXXXXX 260
           S G+  DH  +  LVA T+AHE+GHNLGMEHD  +C   +  CIM P             
Sbjct: 122 SVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTPGRSYEFSDD 181
Query: 261 XLEYLALSFDHGMDYCMRNKP 281
            + Y     +     C+ NKP
Sbjct: 182 SMGYYQKFLNQYKPQCILNKP 202
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647 Length = 202 Back     alignment and structure
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor Length = 201 Back     alignment and structure
>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With Distinct Activities Highlight The Disulfide Patterns In The D Domain Of Adamalysin Family Proteins Length = 422 Back     alignment and structure
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein- 1(orthorhombic Crystal Form) Length = 427 Back     alignment and structure
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With Distinct Activities Highlight The Disulfide Patterns In The D Domain Of Adamalysin Family Proteins Length = 397 Back     alignment and structure
>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-c, A Hemorrhagic Toxin From The Snake Venom Of Agkistrodon Acutus, At 2.2 A Resolution Length = 197 Back     alignment and structure
>pdb|1DTH|A Chain A, Metalloprotease Length = 203 Back     alignment and structure
>pdb|1HTD|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors With The Venom Metalloproteinase, Atrolysin C (Ht-D) Length = 202 Back     alignment and structure
>pdb|4DD8|A Chain A, Adam-8 Metalloproteinase Domain With Bound Batimastat Length = 208 Back     alignment and structure
>pdb|1R54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Adam33 Length = 214 Back     alignment and structure
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase Length = 201 Back     alignment and structure
>pdb|1BUD|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph 5.0 Length = 197 Back     alignment and structure
>pdb|1BSW|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph 7.5 Length = 197 Back     alignment and structure
>pdb|3GBO|A Chain A, Crystal Structure Of Bmoompalpha-I, A Non-Hemorrhagic Metalloproteinase Isolated From Bothrops Moojeni Snake Venom Length = 200 Back     alignment and structure
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom Of Agkistrodon Acutus Length = 417 Back     alignment and structure
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A Metalloproteinase From Bothrops Asper Snake Venom That Exerts Multiple Tissue-Damaging Activities Length = 202 Back     alignment and structure
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom Metalloproteinase Bap1 In Complex With A Peptidomimetic: Insights Into Inhibitor Binding Length = 202 Back     alignment and structure
>pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A Snake Venom Metalloproteinase From Taiwan Habu Length = 203 Back     alignment and structure
>pdb|3DSL|B Chain B, The Three-Dimensional Structure Of Bothropasin, The Main Hemorrhagic Factor From Bothrops Jararaca Venom. Length = 419 Back     alignment and structure
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form 2-1 Crystal) Length = 419 Back     alignment and structure
>pdb|1KUG|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase Complexed With Its Endogenous Inhibitor Penw Length = 203 Back     alignment and structure
>pdb|1YP1|A Chain A, Crystal Structure Of A Non-hemorrhagic Fibrin(ogen)olytic Metalloproteinase From Venom Of Agkistrodon Acutus Length = 202 Back     alignment and structure
>pdb|2E3X|A Chain A, Crystal Structure Of Russell's Viper Venom Metalloproteinase Length = 427 Back     alignment and structure
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of Human Adam22 Length = 510 Back     alignment and structure
>pdb|2RJQ|A Chain A, Crystal Structure Of Adamts5 With Inhibitor Bound Length = 378 Back     alignment and structure
>pdb|3HY7|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In Complex With Marimastat Length = 221 Back     alignment and structure
>pdb|3LJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In Complex With An Amino-2-Indanol Compound Length = 218 Back     alignment and structure
>pdb|3B8Z|A Chain A, High Resolution Crystal Structure Of The Catalytic Domain Of Adamts-5 (Aggrecanase-2) Length = 217 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
2w15_A202 Zinc metalloproteinase BAP1; hydrolase inhibitor c 8e-85
1atl_A202 Atrolysin C; metalloendopeptidase, hydrolase-hydro 9e-85
1bud_A197 Protein (acutolysin A); metalloproteinase, snake v 3e-82
1yp1_A202 FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} 7e-82
1kuf_A203 Atrolysin E, metalloproteinase; alpha/beta protein 4e-81
1r55_A214 ADAM 33; metalloprotease, inhibitor, asthma, hydro 7e-81
1qua_A197 Acutolysin-C, hemorrhagin III; metalloprotease, he 1e-80
4dd8_A208 Disintegrin and metalloproteinase domain-containi 5e-78
2ero_A 427 VAP-1, vascular apoptosis-inducing protein 1; meta 3e-66
2e3x_A 427 Coagulation factor X-activating enzyme light CHAI; 4e-64
3k7n_A 397 K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A { 8e-64
2dw0_A 419 Catrocollastatin; apoptotic toxin, SVMP, metallopr 3e-63
3b8z_A217 Protein adamts-5; alpha/beta, hydrolase; HET: 294; 9e-63
3k7l_A 422 Atragin; SVMP, metalloprotease, hydrolase; HET: NA 1e-61
2v4b_A300 Adamts-1; zymogen, protease, hydrolase, metallopro 6e-56
3g5c_A 510 ADAM 22; alpha/beta fold, cross-linked domain, cel 3e-53
3g5c_A510 ADAM 22; alpha/beta fold, cross-linked domain, cel 1e-04
2rjp_A316 Adamts-4; metalloprotease domain, aggrecanase, cle 2e-52
2rjq_A 378 Adamts-5; metalloprotease domain, aggrecanase, cle 3e-48
2i47_A288 ADAM 17; TACE-inhibitor complex, hydrolase; HET: I 3e-45
2ddf_A257 ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi 3e-39
3p24_A397 BFT-3; metzincins, metalloendopeptidase, hydrolase 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
2x7m_A195 Archaemetzincin; metalloprotease, protease, hydrol 4e-06
4axq_A163 Archaemetzincin; metalloprotease, protease, hydrol 1e-04
3lmc_A210 Peptidase, zinc-dependent; structural genomics, PS 5e-04
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A Length = 202 Back     alignment and structure
 Score =  251 bits (644), Expect = 8e-85
 Identities = 67/197 (34%), Positives = 103/197 (52%)

Query: 85  RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
           RY+EL +V D+ ++  +N N   +     ++ N +N  Y  +++   L  + VW++ D I
Sbjct: 6   RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65

Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
            +  +   TL +F  +R+  L+    +D+AQLLT + F    +G+A  G +C    S GV
Sbjct: 66  KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGV 125

Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
             DH      VA T+AHE+GHNLG+ HDT  C+C +  CIMA   S V   E+S CS   
Sbjct: 126 VRDHSKNNLWVAVTMAHELGHNLGIHHDTGSCSCGAKSCIMASVLSKVLSYEFSDCSQNQ 185

Query: 265 LALSFDHGMDYCMRNKP 281
                 +    C+ NKP
Sbjct: 186 YETYLTNHNPQCILNKP 202
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A Length = 202 Back     alignment and structure
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A Length = 197 Back     alignment and structure
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} Length = 202 Back     alignment and structure
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A Length = 203 Back     alignment and structure
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A* Length = 214 Back     alignment and structure
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9 Length = 197 Back     alignment and structure
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens} Length = 208 Back     alignment and structure
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A* Length = 427 Back     alignment and structure
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis} Length = 427 Back     alignment and structure
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra} Length = 397 Back     alignment and structure
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A* Length = 419 Back     alignment and structure
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A* Length = 217 Back     alignment and structure
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra} Length = 422 Back     alignment and structure
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A* Length = 300 Back     alignment and structure
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} Length = 510 Back     alignment and structure
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} Length = 510 Back     alignment and structure
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A Length = 316 Back     alignment and structure
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens} Length = 378 Back     alignment and structure
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A* Length = 288 Back     alignment and structure
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ... Length = 257 Back     alignment and structure
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A {Bacteroides fragilis} Length = 397 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri} Length = 195 Back     alignment and structure
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A Length = 163 Back     alignment and structure
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum} Length = 210 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
1atl_A202 Atrolysin C; metalloendopeptidase, hydrolase-hydro 100.0
2w15_A202 Zinc metalloproteinase BAP1; hydrolase inhibitor c 100.0
1bud_A197 Protein (acutolysin A); metalloproteinase, snake v 100.0
1yp1_A202 FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} 100.0
4dd8_A208 Disintegrin and metalloproteinase domain-containi 100.0
1kuf_A203 Atrolysin E, metalloproteinase; alpha/beta protein 100.0
1r55_A214 ADAM 33; metalloprotease, inhibitor, asthma, hydro 100.0
1qua_A197 Acutolysin-C, hemorrhagin III; metalloprotease, he 100.0
3k7n_A 397 K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A { 100.0
3k7l_A 422 Atragin; SVMP, metalloprotease, hydrolase; HET: NA 100.0
2dw0_A 419 Catrocollastatin; apoptotic toxin, SVMP, metallopr 100.0
2ero_A 427 VAP-1, vascular apoptosis-inducing protein 1; meta 100.0
3b8z_A217 Protein adamts-5; alpha/beta, hydrolase; HET: 294; 100.0
3g5c_A 510 ADAM 22; alpha/beta fold, cross-linked domain, cel 100.0
2e3x_A 427 Coagulation factor X-activating enzyme light CHAI; 100.0
2v4b_A300 Adamts-1; zymogen, protease, hydrolase, metallopro 100.0
2rjq_A 378 Adamts-5; metalloprotease domain, aggrecanase, cle 100.0
2rjp_A316 Adamts-4; metalloprotease domain, aggrecanase, cle 100.0
2i47_A288 ADAM 17; TACE-inhibitor complex, hydrolase; HET: I 100.0
2ddf_A257 ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi 100.0
3p24_A397 BFT-3; metzincins, metalloendopeptidase, hydrolase 99.97
2x7m_A195 Archaemetzincin; metalloprotease, protease, hydrol 99.46
4axq_A163 Archaemetzincin; metalloprotease, protease, hydrol 99.32
3lmc_A210 Peptidase, zinc-dependent; structural genomics, PS 99.07
2ovx_A159 Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) 97.76
1hv5_A165 Stromelysin 3; inhibition, phosphinic inhibitor, h 97.64
1rm8_A169 MMP-16, matrix metalloproteinase-16, MT3-MMP; memb 97.63
1c7k_A132 NCNP, zinc endoprotease; alpha and beta protein, m 97.48
1i76_A163 MMP-8;, neutrophil collagenase; hydrolase, complex 97.41
1cge_A168 Fibroblast collagenase; hydrolase (metalloprotease 97.37
1y93_A159 Macrophage metalloelastase; matrix metalloproteina 97.35
2xs4_A167 Karilysin protease; hydrolase, bacterial MMP, viru 97.34
2cki_A262 Ulilysin; metalloprotease, hydrolase; HET: ARG; 1. 97.33
2jsd_A160 Matrix metalloproteinase-20; MMP-NNGH, structural 97.33
1hy7_A173 Stromelysin-1, MMP-3; mixed alpha beta structure, 97.26
2y6d_A174 Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapie 97.15
3ayu_A167 72 kDa type IV collagenase; protease, hydrolase-hy 97.12
1slm_A255 Stromelysin-1; hydrolase, metalloprotease, fibrobl 97.05
830c_A168 MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 96.99
3ma2_D181 Matrix metalloproteinase-14; protein - protein com 96.74
1l6j_A425 Matrix metalloproteinase-9; twisted beta sheet fla 96.7
1eak_A421 72 kDa type IV collagenase; hydrolase-hydrolase in 96.38
3ba0_A 365 Macrophage metalloelastase; FULL-length MMP-12, he 96.01
1su3_A 450 Interstitial collagenase; prodomain, hemopexin dom 95.63
1ck7_A 631 Protein (gelatinase A); hydrolase (metalloprotease 94.37
1sat_A 471 Serratia protease; parallel beta helix, parallel b 94.28
1g9k_A 463 Serralysin; beta jelly roll, hydrolase; 1.96A {Pse 94.2
1kap_P 479 Alkaline protease; calcium binding protein, zinc m 94.18
1k7i_A 479 PROC, secreted protease C; metalloprotease, hydrol 94.07
3lqb_A199 Hatching enzyme, LOC792177 protein; hydrolase, met 91.48
3edh_A201 Bone morphogenetic protein 1; vicinal disulfide, a 91.26
3lq0_A235 Proastacin; metallopeptidase, zymogen activation, 88.99
3ujz_A 869 Metalloprotease STCE; mucin-type glycoprotein, hyd 85.32
3cqb_A107 Probable protease HTPX homolog; heat shock protein 84.2
4gwm_A 592 Meprin A subunit beta; mulidomain structure, hydro 81.57
3e11_A114 Predicted zincin-like metalloprotease; DUF1025 fam 80.37
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A Back     alignment and structure
Probab=100.00  E-value=1.6e-56  Score=379.03  Aligned_cols=199  Identities=34%  Similarity=0.612  Sum_probs=187.0

Q ss_pred             cceEEEEEEEEehHHHHHhcCChHHHHHHHHHHHHHHHhhcccccEEEEEEEEEEecCCCcccccCCHHHHHHHHHHhhh
Q psy1606          83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRK  162 (285)
Q Consensus        83 ~~~~vel~vv~D~~~~~~~~~n~~~~~~~v~~~~n~v~~iy~~~~i~v~l~~l~iw~~~~~~~~~~~~~~~l~~f~~w~~  162 (285)
                      ++||||++||+|+.+|++|+++.+++++++++++|+||.+|++++|+|.|++++||+++|+++++.++..+|.+|++|++
T Consensus         4 ~~~~vel~vv~D~~~~~~~~~~~~~v~~~i~~~vn~vn~iy~~~~i~v~Lv~l~iw~~~d~i~~~~~~~~~L~~F~~w~~   83 (202)
T 1atl_A            4 PQRYIELVVVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSNEDQINIQSASSDTLNAFAEWRE   83 (202)
T ss_dssp             CCEEEEEEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECSSCCSSCCCSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEEcHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCceEEEEEEEEEecCCCccccCCCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999988899999999999998


Q ss_pred             hccCCCCCCCceeeeeeeecCCCceeccccCCCCcccccCceeecCCCchhHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q psy1606         163 DRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDR  242 (285)
Q Consensus       163 ~~~~~~~~~D~a~llt~~~~~~~~~G~A~~g~~C~~~~~~~v~~~~~~~~~~~a~~~AHElGH~lG~~HD~~~c~C~~~~  242 (285)
                      ..+..+.+||+|+|||+.+|.+++.|+||+|++|++.+++||+++.+.....+|.|+||||||+|||.||+..|.|++++
T Consensus        84 ~~l~~~~~~D~a~LlT~~~~~~~~~GlA~vg~~C~~~~s~gi~~~~~~~~~~~a~~~AHElGHnlG~~HD~~~C~c~~~~  163 (202)
T 1atl_A           84 TDLLNRKSHDNAQLLTAIELDEETLGLAPLGTMCDPKLSIGIVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASL  163 (202)
T ss_dssp             HTHHHHSCCSEEEEEECSCCSSSCCEECCTTCTTCTTTSEEEEECCCSCHHHHHHHHHHHHHHHTTCCCCCTTCEETTEE
T ss_pred             hccCCCCCCCcEEEEeccCCCCCeEEEEEecCCCcCccCCceEeccCCcceeeEEEehhhhccccCceeCCCCCCCCCCC
Confidence            77766678999999999999888999999999999999999999988766668999999999999999999999999889


Q ss_pred             cccCCCCCCCCCCccCccCHHHHHhHhccCccccccccC
Q psy1606         243 CIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKP  281 (285)
Q Consensus       243 cIM~~~~~~~~~~~fS~CS~~~~~~~l~~~~~~CL~~~p  281 (285)
                      |||+|..+..+++.||+||+++|+++|..+.+.||.|+|
T Consensus       164 cIM~~~~~~~~~~~FS~CS~~~~~~~l~~~~~~Cl~n~P  202 (202)
T 1atl_A          164 CIMRPGLTKGRSYEFSDDSMHYYERFLKQYKPQCILNKP  202 (202)
T ss_dssp             ETTCSSCCCCSCEECCHHHHHHHHHHHHHHCCSGGGSCC
T ss_pred             eEcCcccCCCCCCccCHHhHHHHHHHHhcCCCccccCCC
Confidence            999998776567899999999999999988889999988
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A Back     alignment and structure
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A Back     alignment and structure
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} Back     alignment and structure
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens} Back     alignment and structure
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A Back     alignment and structure
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A* Back     alignment and structure
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9 Back     alignment and structure
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra} Back     alignment and structure
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra} Back     alignment and structure
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A* Back     alignment and structure
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A* Back     alignment and structure
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A* Back     alignment and structure
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} Back     alignment and structure
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis} Back     alignment and structure
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A* Back     alignment and structure
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens} Back     alignment and structure
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A Back     alignment and structure
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A* Back     alignment and structure
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ... Back     alignment and structure
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A {Bacteroides fragilis} Back     alignment and structure
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri} Back     alignment and structure
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A* Back     alignment and structure
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum} Back     alignment and structure
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A* Back     alignment and structure
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11 Back     alignment and structure
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11 Back     alignment and structure
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A Back     alignment and structure
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ... Back     alignment and structure
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A Back     alignment and structure
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ... Back     alignment and structure
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A Back     alignment and structure
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A* Back     alignment and structure
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens} Back     alignment and structure
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ... Back     alignment and structure
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A* Back     alignment and structure
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A* Back     alignment and structure
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 Back     alignment and structure
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ... Back     alignment and structure
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M Back     alignment and structure
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Back     alignment and structure
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Back     alignment and structure
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Back     alignment and structure
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Back     alignment and structure
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A Back     alignment and structure
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P Back     alignment and structure
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A Back     alignment and structure
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P Back     alignment and structure
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Back     alignment and structure
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A Back     alignment and structure
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Back     alignment and structure
>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A {Escherichia coli} Back     alignment and structure
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1atla_200 d.92.1.9 (A:) Snake venom metalloprotease {Western 2e-57
d1nd1a_202 d.92.1.9 (A:) Snake venom metalloprotease {Terciop 3e-56
d1r55a_203 d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 2e-55
d1bswa_197 d.92.1.9 (A:) Snake venom metalloprotease {Five-pa 6e-55
d1quaa_197 d.92.1.9 (A:) Snake venom metalloprotease {Chinese 1e-54
d1kufa_201 d.92.1.9 (A:) Snake venom metalloprotease {Taiwan 7e-53
d2i47a1254 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, 8e-33
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]} Length = 200 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]

 Score =  180 bits (458), Expect = 2e-57
 Identities = 68/197 (34%), Positives = 104/197 (52%)

Query: 85  RYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEI 144
           RY+ELV+V D+R++  +N +   +     +I N IN  Y  LNI ++L  + +W+  D+I
Sbjct: 4   RYIELVVVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSNEDQI 63

Query: 145 TLNVNGDITLTNFLSYRKDRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGV 204
            +      TL  F  +R+  L+    +DNAQLLT +   +  +G A  G +C  + S G+
Sbjct: 64  NIQSASSDTLNAFAEWRETDLLNRKSHDNAQLLTAIELDEETLGLAPLGTMCDPKLSIGI 123

Query: 205 NVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDRCIMAPSSSSVSPTEWSSCSLEY 264
             DH  +  L+  T+AHE+GHNLGMEHD  +C   +  CIM P  +     E+S  S+ Y
Sbjct: 124 VQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLRGASLCIMRPGLTKGRSYEFSDDSMHY 183

Query: 265 LALSFDHGMDYCMRNKP 281
                      C+ NKP
Sbjct: 184 YERFLKQYKPQCILNKP 200
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]} Length = 202 Back     information, alignment and structure
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]} Length = 197 Back     information, alignment and structure
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]} Length = 197 Back     information, alignment and structure
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]} Length = 201 Back     information, alignment and structure
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1nd1a_202 Snake venom metalloprotease {Terciopelo (Bothrops 100.0
d1atla_200 Snake venom metalloprotease {Western diamonback ra 100.0
d1bswa_197 Snake venom metalloprotease {Five-pace snake (Agki 100.0
d1r55a_203 ADAM33 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1kufa_201 Snake venom metalloprotease {Taiwan habu (Trimeres 100.0
d1quaa_197 Snake venom metalloprotease {Chinese five-pace sna 100.0
d2i47a1254 TNF-alpha converting enzyme, TACE, catalytic domai 100.0
d1hv5a_162 Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI 97.55
d1hfca_157 Fibroblast collagenase (MMP-1) {Human (Homo sapien 97.52
d2ovxa1159 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 97.5
d1rm8a_169 Matrix metalloproteinase-16 (MMP-16) {Human (Homo 97.45
d1qiba_161 Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} 97.32
d1xuca1169 Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI 97.3
d1i76a_163 Neutrophil collagenase (MMP-8) {Human (Homo sapien 97.3
d1mmqa_166 Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9 97.27
d1bqqm_174 Membrane-type matrix metalloproteinase (CDMT1-MMP) 97.18
d1y93a1158 Macrophage elastase (MMP-12) {Human (Homo sapiens) 97.13
d1hy7a_168 Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro 97.11
d1kapp2246 Metalloprotease {Pseudomonas aeruginosa [TaxId: 28 96.49
d1k7ia2241 Metalloprotease {Erwinia chrysanthemi [TaxId: 556] 96.46
d1c7ka_132 Zinc protease {Streptomyces caespitosus [TaxId: 53 96.36
d1g9ka2242 Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId 96.21
d1sata2243 Metalloprotease {Serratia marcescens [TaxId: 615]} 95.98
d1asta_200 Astacin {European fresh water crayfish (Astacus as 93.81
d3e11a1113 Uncharacterized protein Acel_2062 {Acidothermus ce 84.69
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Terciopelo (Bothrops asper), bap1 [TaxId: 8722]

Probab=100.00  E-value=9.1e-55  Score=366.45  Aligned_cols=199  Identities=34%  Similarity=0.615  Sum_probs=187.4

Q ss_pred             cceEEEEEEEEehHHHHHhcCChHHHHHHHHHHHHHHHhhcccccEEEEEEEEEEecCCCcccccCCHHHHHHHHHHhhh
Q psy1606          83 KSRYLELVIVVDNRLYNLFNKNSKLVHRHCKDISNVINALYEKLNIFIALVGVVVWTEYDEITLNVNGDITLTNFLSYRK  162 (285)
Q Consensus        83 ~~~~vel~vv~D~~~~~~~~~n~~~~~~~v~~~~n~v~~iy~~~~i~v~l~~l~iw~~~~~~~~~~~~~~~l~~f~~w~~  162 (285)
                      .+|||||+||+|+.+|++|++|.+.++++++.++|+||.+|++++|+|.|++|+||+++|++.++.++..+|.+|++|+.
T Consensus         4 ~~ryiEl~vv~D~~~~~~~~~n~~~~~~~~~~~vn~v~~~y~~~~i~v~l~~i~i~~~~~~~~~~~~~~~~L~~f~~~~~   83 (202)
T d1nd1a_           4 SPRYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLIKVQKDSSKTLKSFGEWRE   83 (202)
T ss_dssp             CCEECCEEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHHHGGGTEECCEEEEEECSSCCSSCCCSCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEcHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhcccCcceEEEEEeecCCcccccCcHHHHHHHhhhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999998999999999999988


Q ss_pred             hccCCCCCCCceeeeeeeecCCCceeccccCCCCcccccCceeecCCCchhHHHHHHHHHhhhhcCCCCCCCCCCCCCCC
Q psy1606         163 DRLVLSHPNDNAQLLTGMTFSDGVVGKALKGPICTYEFSGGVNVDHKNVVGLVATTVAHEMGHNLGMEHDTTECTCPSDR  242 (285)
Q Consensus       163 ~~~~~~~~~D~a~llt~~~~~~~~~G~A~~g~~C~~~~~~~v~~~~~~~~~~~a~~~AHElGH~lG~~HD~~~c~C~~~~  242 (285)
                      ..+..+.++|+++|+|+++|.+++.|+||+|++|++.++++++++.+......|.++||||||+|||.||+.+|.|++++
T Consensus        84 ~~~~~~~~~D~a~l~t~~~~~~~~~G~A~~g~iC~~~~s~~v~~~~~~~~~~~a~~~AHElGH~lG~~HD~~~c~C~~~~  163 (202)
T d1nd1a_          84 RDLLPRISHDHAQLLTAVVFDGNTIGRAYTGGMCDPRHSVGVVRDHSKNNLWVAVTMAHELGHNLGIDHDTGSCSCGAKS  163 (202)
T ss_dssp             HTHHHHSCCSEEEEEECCCCGGGCCEEECTTCTTCTTTSEEEEECCCSSHHHHHHHHHHHHHHHTTCCCCCTTCCCSSSE
T ss_pred             hccCcccccchhhheeeccCCCCeeeeeeccCccCCccccceeeccCCcchHHHHHHHHHHHhhcCCccCCCCCCCCCCC
Confidence            77666678999999999999888999999999999999999999998888888999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCccCccCHHHHHhHhccCccccccccC
Q psy1606         243 CIMAPSSSSVSPTEWSSCSLEYLALSFDHGMDYCMRNKP  281 (285)
Q Consensus       243 cIM~~~~~~~~~~~fS~CS~~~~~~~l~~~~~~CL~~~p  281 (285)
                      |||++..+...++.||+||+++|.++|..+.+.||+|.|
T Consensus       164 cIM~~~~~~~~~~~fS~CS~~~~~~~l~~~~~~CL~n~P  202 (202)
T d1nd1a_         164 CIMASVLSKVLSYEFSDCSQNQYETYLTNHNPQCILNKP  202 (202)
T ss_dssp             ETTCSSCCCCSCEECCHHHHHHHHHHHHHHCCGGGSCCC
T ss_pred             cccccccCCCCCCccCHHHHHHHHHHHccCCCcccCCCC
Confidence            999998766567899999999999999988889999998
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]} Back     information, alignment and structure
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]} Back     information, alignment and structure
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]} Back     information, alignment and structure
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]} Back     information, alignment and structure
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} Back     information, alignment and structure
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]} Back     information, alignment and structure
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]} Back     information, alignment and structure
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} Back     information, alignment and structure
>d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure