Psyllid ID: psy16087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MLVYKLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIVIENVAQTRRLAETTLVASSLVPSSLLDEGPTCTGSGSQ
ccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccHHcccccccccccccccccccccccc
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEcccccHEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccccccccccccccccccccccccccccccccccccccccccccc
MLVYKLQvngkwglpdfvCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLqvngkwglpdfvCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQpikyakhknnrRVWLTIVLVWAISVAigspivlglnntpdrvpdlclfyssdfiiysslssfyipCIIMVFLYYNIFKALSKRAKKAKAarkphlsemkpgivIENVAQTRRLAETTLVAsslvpsslldegptctgsgsq
MLVYKLQvngkwglpDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPikyakhknnrrVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAarkphlsemkpgivIENVAQTRRLAETTLVasslvpsslldegptctgsgsq
MLVYKLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLClfyssdfiiysslssfyiPCIIMVFLYYNIFkalskrakkakaarkPHLSEMKPGIVIENVAQTRRLAETTlvasslvpssllDEGPTCTGSGSQ
*LVYKLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALS*******************GIVIENVAQTRRLAETTLV**********************
*LVYKLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKAL*************************************************************
MLVYKLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALS*************LSEMKPGIVIENVAQTRRLAETTLVASSLVPSSLL************
*********GKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAK********************************************************
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLVYKLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVYLPFVYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIVIENVAQTRRLAETTLVASSLVPSSLLDEGPTCTGSGSQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q8IS44 506 Dopamine D2-like receptor no N/A 0.793 0.395 0.736 8e-81
P53453 463 D(2)-like dopamine recept N/A N/A 0.619 0.336 0.398 3e-28
P21917 467 D(4) dopamine receptor OS no N/A 0.539 0.291 0.424 4e-28
Q6TLJ0357 D(4) dopamine receptor OS N/A N/A 0.551 0.389 0.402 9e-27
P51436 387 D(4) dopamine receptor OS yes N/A 0.535 0.348 0.422 1e-26
P30729 387 D(4) dopamine receptor OS yes N/A 0.535 0.348 0.415 2e-26
P24628 442 D(2) dopamine receptor A N/A N/A 0.646 0.368 0.378 2e-26
P61168 444 D(2) dopamine receptor OS no N/A 0.746 0.423 0.355 2e-25
P61169 444 D(2) dopamine receptor OS no N/A 0.583 0.331 0.388 2e-25
Q9GJU1 443 D(2) dopamine receptor OS yes N/A 0.75 0.426 0.333 2e-25
>sp|Q8IS44|DRD2L_DROME Dopamine D2-like receptor OS=Drosophila melanogaster GN=D2R PE=2 SV=1 Back     alignment and function desciption
 Score =  300 bits (767), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 53  SNVFLLSVYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQ 111
           +++ +  V +PF VY  VNG W LPD VCDFYIAMDV+CSTSSIFNLVAISIDRYIAVTQ
Sbjct: 121 ADLLVAVVVMPFAVYFLVNGAWALPDVVCDFYIAMDVICSTSSIFNLVAISIDRYIAVTQ 180

Query: 112 PIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLS 171
           PIKYAKHKN+RRV LTI+LVWAIS AIGSPIVLGLNNTP+R PD+C FY++DFI+YSSLS
Sbjct: 181 PIKYAKHKNSRRVCLTILLVWAISAAIGSPIVLGLNNTPNREPDVCAFYNADFILYSSLS 240

Query: 172 SFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIVIENVAQTRRLAETTLVA 231
           SFYIPCIIMVFLY+NIFKAL  RA+K +AARKPHLSE+  G VIEN+AQTRRLAET L +
Sbjct: 241 SFYIPCIIMVFLYWNIFKALRSRARKQRAARKPHLSELTGGSVIENIAQTRRLAETALDS 300

Query: 232 SSLVPSSLLDEGPTCTGSGSQ 252
           S      L DE  T T SGS 
Sbjct: 301 SRHASRILPDEAATNTASGSN 321
Receptor for dopamine. The activity of this receptor is mediated by G proteins which inhibit adenylyl cyclase.
Drosophila melanogaster (taxid: 7227)
>sp|P53453|DRD2L_TAKRU D(2)-like dopamine receptor OS=Takifugu rubripes GN=d215 PE=3 SV=1 Back     alignment and function description
>sp|P21917|DRD4_HUMAN D(4) dopamine receptor OS=Homo sapiens GN=DRD4 PE=1 SV=2 Back     alignment and function description
>sp|Q6TLJ0|DRD4_MUSPF D(4) dopamine receptor OS=Mustela putorius furo GN=DRD4 PE=2 SV=1 Back     alignment and function description
>sp|P51436|DRD4_MOUSE D(4) dopamine receptor OS=Mus musculus GN=Drd4 PE=2 SV=1 Back     alignment and function description
>sp|P30729|DRD4_RAT D(4) dopamine receptor OS=Rattus norvegicus GN=Drd4 PE=1 SV=2 Back     alignment and function description
>sp|P24628|DRD2A_XENLA D(2) dopamine receptor A OS=Xenopus laevis GN=drd2-a PE=2 SV=1 Back     alignment and function description
>sp|P61168|DRD2_MOUSE D(2) dopamine receptor OS=Mus musculus GN=Drd2 PE=2 SV=2 Back     alignment and function description
>sp|P61169|DRD2_RAT D(2) dopamine receptor OS=Rattus norvegicus GN=Drd2 PE=1 SV=1 Back     alignment and function description
>sp|Q9GJU1|DRD2_CANFA D(2) dopamine receptor OS=Canis familiaris GN=DRD2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
383848930 680 PREDICTED: dopamine D2-like receptor-lik 0.75 0.277 0.762 1e-80
62526102 694 D2-like dopamine receptor [Apis mellifer 0.75 0.272 0.757 3e-80
340718645 685 PREDICTED: dopamine D2-like receptor-lik 0.75 0.275 0.752 4e-80
350405090 686 PREDICTED: dopamine D2-like receptor-lik 0.75 0.275 0.752 5e-80
380012387 674 PREDICTED: dopamine D2-like receptor-lik 0.75 0.280 0.757 5e-80
195479612 882 GE17345 [Drosophila yakuba] gi|194188479 0.793 0.226 0.736 2e-79
78706554 572 dopamine 2-like receptor, isoform E [Dro 0.793 0.349 0.736 3e-79
23320915 606 dopamine 2-like receptor DD2R-606 [Droso 0.793 0.330 0.736 4e-79
195163343 883 GL12926 [Drosophila persimilis] gi|19410 0.793 0.226 0.731 4e-79
198469218 882 GA14269 [Drosophila pseudoobscura pseudo 0.793 0.226 0.731 4e-79
>gi|383848930|ref|XP_003700100.1| PREDICTED: dopamine D2-like receptor-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/198 (76%), Positives = 166/198 (83%), Gaps = 9/198 (4%)

Query: 62  LPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKN 120
           +PF VY+ VNG W LP FVCDFYIAMDV CSTSSIFNLVAISIDRYIAVTQPIKYAKHKN
Sbjct: 227 MPFAVYVLVNGSWSLPGFVCDFYIAMDVTCSTSSIFNLVAISIDRYIAVTQPIKYAKHKN 286

Query: 121 NRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCLFYSSDFIIYSSLSSFYIPCIIM 180
           NRRVWLTI+LVWAIS AIGSPIVLGLNNTPDR+PD CLFY++DFIIYSSLSSFYIPCIIM
Sbjct: 287 NRRVWLTILLVWAISAAIGSPIVLGLNNTPDRIPDQCLFYNADFIIYSSLSSFYIPCIIM 346

Query: 181 VFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIVIENVAQTR------RLAETTLVASSL 234
           VFLYYNIFKAL  RAKKA+A RKP+L ++KPG +IEN+A TR      R AET L A++L
Sbjct: 347 VFLYYNIFKALRNRAKKARANRKPNLGDIKPGSIIENIAHTRSGYSVARFAETALGAAAL 406

Query: 235 VPSSLLDEGPTCTGSGSQ 252
           V   +  E PT T SGS 
Sbjct: 407 VAPGM--EEPTNTASGSN 422

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|62526102|ref|NP_001014983.1| D2-like dopamine receptor [Apis mellifera] gi|62085057|gb|AAX62923.1| D2-like dopamine receptor [Apis mellifera] Back     alignment and taxonomy information
>gi|340718645|ref|XP_003397774.1| PREDICTED: dopamine D2-like receptor-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350405090|ref|XP_003487324.1| PREDICTED: dopamine D2-like receptor-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380012387|ref|XP_003690265.1| PREDICTED: dopamine D2-like receptor-like [Apis florea] Back     alignment and taxonomy information
>gi|195479612|ref|XP_002100955.1| GE17345 [Drosophila yakuba] gi|194188479|gb|EDX02063.1| GE17345 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|78706554|ref|NP_001027080.1| dopamine 2-like receptor, isoform E [Drosophila melanogaster] gi|71854497|gb|AAZ52487.1| dopamine 2-like receptor, isoform E [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|23320915|gb|AAN15955.1| dopamine 2-like receptor DD2R-606 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195163343|ref|XP_002022510.1| GL12926 [Drosophila persimilis] gi|194104502|gb|EDW26545.1| GL12926 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|198469218|ref|XP_001354951.2| GA14269 [Drosophila pseudoobscura pseudoobscura] gi|198146769|gb|EAL32007.2| GA14269 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
FB|FBgn0053517 506 D2R "Dopamine 2-like receptor" 0.789 0.393 0.605 1.1e-57
ZFIN|ZDB-GENE-051113-172 418 drd4-rs "dopamine receptor D4 0.539 0.325 0.376 4e-22
ZFIN|ZDB-GENE-070508-3 382 drd4b "dopamine receptor D4b" 0.535 0.353 0.388 1.7e-21
UNIPROTKB|F1NYX6 330 DRD4 "Uncharacterized protein" 0.539 0.412 0.369 3.9e-21
WB|WBGene00001053 849 dop-2 [Caenorhabditis elegans 0.535 0.159 0.366 6.5e-21
UNIPROTKB|E7EM37 849 dop-2 "Protein DOP-2, isoform 0.535 0.159 0.366 6.5e-21
MGI|MGI:94926 387 Drd4 "dopamine receptor D4" [M 0.531 0.346 0.391 1.3e-20
WB|WBGene00020506 607 dop-3 [Caenorhabditis elegans 0.527 0.219 0.394 1.9e-20
UNIPROTKB|Q6RYS9 607 dop-3 "Dopamine receptor 3" [C 0.527 0.219 0.394 1.9e-20
RGD|2522 387 Drd4 "dopamine receptor D4" [R 0.531 0.346 0.384 2.2e-20
FB|FBgn0053517 D2R "Dopamine 2-like receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 121/200 (60%), Positives = 134/200 (67%)

Query:    53 SNVFLLSVYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQ 111
             +++ +  V +PF VY  VNG W LPD VCDFYIAMDV+CSTSSIFNLVAISIDRYIAVTQ
Sbjct:   121 ADLLVAVVVMPFAVYFLVNGAWALPDVVCDFYIAMDVICSTSSIFNLVAISIDRYIAVTQ 180

Query:   112 PIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLCXXXXXXXXXXXXXX 171
             PIKYAKHKN+RRV LTI+LVWAIS AIGSPIVLGLNNTP+R PD+C              
Sbjct:   181 PIKYAKHKNSRRVCLTILLVWAISAAIGSPIVLGLNNTPNREPDVCAFYNADFILYSSLS 240

Query:   172 XXXXPCIIMVFLYYNIFXXXXXXXXXXXXXXXPHLSEMKPGIVIENVAQTRRLAETTXXX 231
                 PCIIMVFLY+NIF               PHLSE+  G VIEN+AQTRRLAET    
Sbjct:   241 SFYIPCIIMVFLYWNIFKALRSRARKQRAARKPHLSELTGGSVIENIAQTRRLAETALDS 300

Query:   232 XXXXXXXXXDEGPTCTGSGS 251
                      DE  T T SGS
Sbjct:   301 SRHASRILPDEAATNTASGS 320
GO:0007212 "dopamine receptor signaling pathway" evidence=ISS;IDA
GO:0004952 "dopamine neurotransmitter receptor activity" evidence=ISS;IDA
GO:0016021 "integral to membrane" evidence=ISS;NAS
GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS
GO:0004930 "G-protein coupled receptor activity" evidence=ISS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS
GO:0001591 "dopamine neurotransmitter receptor activity, coupled via Gi/Go" evidence=NAS;IDA
ZFIN|ZDB-GENE-051113-172 drd4-rs "dopamine receptor D4 related sequence" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070508-3 drd4b "dopamine receptor D4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYX6 DRD4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00001053 dop-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E7EM37 dop-2 "Protein DOP-2, isoform c" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:94926 Drd4 "dopamine receptor D4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00020506 dop-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q6RYS9 dop-3 "Dopamine receptor 3" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|2522 Drd4 "dopamine receptor D4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-31
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 7e-09
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-06
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 0.002
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 0.002
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  115 bits (291), Expect = 2e-31
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 10/165 (6%)

Query: 56  FLLSVYLPF--VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPI 113
            L  + LP   +Y  V G W   D +C     + V+   +SI  L AISIDRY+A+  P+
Sbjct: 25  LLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPL 84

Query: 114 KYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNT--PDRVPDLCLF------YSSDFI 165
           +Y + +  RR  + I++VW +++ +  P +L        +     CL           + 
Sbjct: 85  RYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTKRSYT 144

Query: 166 IYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMK 210
           + S+L  F +P ++++  Y  I + L KRA+   +  +   S  K
Sbjct: 145 LLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKRSSSK 189

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
KOG4219|consensus 423 99.97
KOG4220|consensus 503 99.96
PHA03234338 DNA packaging protein UL33; Provisional 99.93
PHA02834323 chemokine receptor-like protein; Provisional 99.93
PHA02638417 CC chemokine receptor-like protein; Provisional 99.91
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.9
PHA03235 409 DNA packaging protein UL33; Provisional 99.89
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.88
KOG2087|consensus363 99.49
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.34
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.09
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 98.82
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 98.7
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.39
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.26
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 97.99
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 97.48
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.47
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 97.36
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.18
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.07
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 96.18
KOG4193|consensus610 96.1
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 96.0
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 95.72
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 95.64
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 95.41
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 95.31
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 93.88
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 92.72
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 92.7
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 92.49
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 89.85
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 89.65
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 85.27
>KOG4219|consensus Back     alignment and domain information 
Probab=99.97  E-value=7.6e-31  Score=218.37  Aligned_cols=224  Identities=19%  Similarity=0.330  Sum_probs=174.8

Q ss_pred             EEcCc-cCCchh-hHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeee----------hhhh-HHHHhcCcc
Q psy16087          7 QVNGK-WGLPDF-VCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSV----------YLPF-VYLQVNGKW   73 (252)
Q Consensus         7 ~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l----------~~p~-~~~~~~~~~   73 (252)
                      +.+++ +.++.+ ..++.++++++.+++++||++|++++..+|++|+.+|++++|+          +.|+ ..+.+...|
T Consensus        22 ~~~p~~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W  101 (423)
T KOG4219|consen   22 EFEPGLFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEW  101 (423)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence            44443 666655 4456788999999999999999999999999999999999984          4566 667778999


Q ss_pred             ccccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccCC--C
Q psy16087         74 GLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNTP--D  151 (252)
Q Consensus        74 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~--~  151 (252)
                      .+|...|++..++......+|+++|+|+|+|||+||.||++.  ..+++..+.+++++|+.++++++|..+......  .
T Consensus       102 ~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~--r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~  179 (423)
T KOG4219|consen  102 YFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQP--RPSRRSSKIIILLIWALALLLALPQLLYSSVEELYL  179 (423)
T ss_pred             ccccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhccc--CCCCcceeehhHHHHHHHHHHhccceeeeeeEEeec
Confidence            999999999999999999999999999999999999999994  389999999999999999999999987654421  1


Q ss_pred             ---CCCcceeeec--------------cchhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHHhHHhccCCCCcccCCccc
Q psy16087        152 ---RVPDLCLFYS--------------SDFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPGIV  214 (252)
Q Consensus       152 ---~~~~~C~~~~--------------~~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~  214 (252)
                         .....|....              +.|...+.++.+++|++++...|..|.+++|.++.     .+++.    + ..
T Consensus       180 ~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~-----~gd~~----d-~~  249 (423)
T KOG4219|consen  180 YDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRI-----PGDQQ----D-RK  249 (423)
T ss_pred             cCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC-----ccchh----c-hh
Confidence               2233444321              12677788899999999999999999999997531     11111    0 11


Q ss_pred             hhhhhhhhhhccceeeeeccCCccccCC
Q psy16087        215 IENVAQTRRLAETTLVASSLVPSSLLDE  242 (252)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (252)
                      +++.+.+++..+..++++.-++.||.+-
T Consensus       250 ~~~~kak~K~vkmliiVV~~FaicWlPy  277 (423)
T KOG4219|consen  250 HEQLKAKKKVVKMLIIVVVIFAICWLPY  277 (423)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            2344445556666667777778888764

>KOG4220|consensus Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 3e-15
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 4e-11
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 3e-10
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 3e-10
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 8e-10
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 1e-09
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 4e-09
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 6e-09
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 6e-09
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 6e-09
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 7e-09
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 8e-09
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 9e-09
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 9e-09
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 9e-09
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 4e-07
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 4e-07
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 5e-07
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 5e-07
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 9e-07
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 9e-07
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 1e-06
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-06
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 1e-05
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 9e-04
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 9e-04
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 53  SNVFLLSVYLPFV-YLQVNGK-WGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVT 110
           +++ + ++ +P+V YL+V G  W      CD ++ +DVM  T+SI+NL AISIDRY AV 
Sbjct: 83  ADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVV 142
Query: 111 QPIKYAKHKNN---RRVWLTIVLVWAISVAIGSPIVLGLNNTPDRVPDLC 157
            P+ Y         RRV L I  VW ++ A+  P++ G N T D  P +C
Sbjct: 143 MPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGD--PTVC 190
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 2e-51
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 3e-13
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 3e-51
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 5e-51
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 1e-12
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 6e-50
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 1e-12
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 8e-50
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 7e-12
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-47
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 4e-12
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-43
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 6e-12
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 3e-40
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 9e-11
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 3e-32
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 7e-09
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 7e-24
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 8e-22
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 2e-21
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 4e-21
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 1e-19
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 4e-19
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 4e-09
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
 Score =  173 bits (440), Expect = 2e-51
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 20/219 (9%)

Query: 53  SNVFLLS----------VYLPF-VYLQVNGKWGLPDFVCDFYIAMDVMCSTSSIFNLVAI 101
           +N F+ S            +PF     +   W   +F C+F+ ++DV+C T+SI  L  I
Sbjct: 75  TNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVI 134

Query: 102 SIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIG-SPIVLGLNNTPDRV------- 153
           ++DRY A+T P KY       +  + I++VW +S      PI +       +        
Sbjct: 135 AVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAE 194

Query: 154 PDLCLFYSS-DFIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAKKAKAARKPHLSEMKPG 212
              C F+++  + I SS+ SFY+P +IMVF+Y  +F+   ++    +  R      +K  
Sbjct: 195 ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIY 254

Query: 213 IVIENVAQTRRLAETTLVASSLVPSSLLDEGPTCTGSGS 251
              E           T   S     S LD+      +G 
Sbjct: 255 KDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGV 293
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.95
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.95
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.94
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.94
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.94
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.94
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.94
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.93
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.93
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.93
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.93
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.93
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.93
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.93
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.93
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.92
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.92
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.91
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.82
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 93.0
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
Probab=99.95  E-value=6.5e-29  Score=220.04  Aligned_cols=192  Identities=24%  Similarity=0.315  Sum_probs=150.6

Q ss_pred             EEEEcCccC---CchhhHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeeeh---------hhh-HHH-Hhc
Q psy16087          5 KLQVNGKWG---LPDFVCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVY---------LPF-VYL-QVN   70 (252)
Q Consensus         5 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~---------~p~-~~~-~~~   70 (252)
                      ||..++...   .+....++.+++.+++++|++||+++++++.+++++|+++|+|++|++         +|+ ... ...
T Consensus         4 ~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~   83 (484)
T 3vw7_A            4 AFISEDASGYLTSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSG   83 (484)
T ss_dssp             -----CHHHHHTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             cccCCCCccCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444555432   334566788889999999999999999999999999999999998843         444 333 334


Q ss_pred             CccccccccchHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccC-
Q psy16087         71 GKWGLPDFVCDFYIAMDVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNT-  149 (252)
Q Consensus        71 ~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~-  149 (252)
                      +.|.+|+..|++..++..++..+|++++++||+|||+||++|++|+..++++++..+++++|++++++++|+++.+... 
T Consensus        84 ~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~  163 (484)
T 3vw7_A           84 SDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQ  163 (484)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEE
T ss_pred             CCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999998876552 


Q ss_pred             -CCCCCcceeeeccc---------hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q psy16087        150 -PDRVPDLCLFYSSD---------FIIYSSLSSFYIPCIIMVFLYYNIFKALSKRAK  196 (252)
Q Consensus       150 -~~~~~~~C~~~~~~---------~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~~~  196 (252)
                       +......|......         |.....++.+++|+++|+++|.+|++.++++.+
T Consensus       164 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~  220 (484)
T 3vw7_A          164 VPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSAN  220 (484)
T ss_dssp             ETTTTEEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             cCCCCCceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhH
Confidence             23334567654322         445556788999999999999999999998764
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.84
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=2.4e-22  Score=168.49  Aligned_cols=176  Identities=17%  Similarity=0.345  Sum_probs=139.8

Q ss_pred             hHHHHHHHHHHHHHHhhhhheeeeeeccccccccccceeeeeeh----------hhh-HHHHhcCccccccccchHhhHH
Q psy16087         18 VCDFYIAMDVMCSTSSIFNLVAISIDRGKLCFTKFSNVFLLSVY----------LPF-VYLQVNGKWGLPDFVCDFYIAM   86 (252)
Q Consensus        18 ~~~~~~~~~~~~~~g~~gN~~vi~v~~~~~~~~~~~~~li~~l~----------~p~-~~~~~~~~~~~~~~~C~~~~~~   86 (252)
                      ..++..++.+++++|++||+++++++.+++++|++.|++++|++          +|. +.....+.|..++..|+...++
T Consensus        37 ~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  116 (348)
T d1u19a_          37 FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFF  116 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhc
Confidence            45667778888999999999999999988999999999998743          344 5566677888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhHHHHHHHHHHhhhchhcccccC-CCCCCcceeeecc---
Q psy16087         87 DVMCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTIVLVWAISVAIGSPIVLGLNNT-PDRVPDLCLFYSS---  162 (252)
Q Consensus        87 ~~~~~~~s~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~-~~~~~~~C~~~~~---  162 (252)
                      ...+..+|.++++++++|||.+|.+|++|.. .++++....+..+|..++++..|+.+..... .+.....|.....   
T Consensus       117 ~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
T d1u19a_         117 ATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPH  195 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCC
T ss_pred             cccceeeecchhhhhhcccceeeeccccccc-cccccccccceeeehhhhheecccccccceeccCCccccccccccccc
Confidence            9999999999999999999999999999866 4667777888888988988888887765542 2233334443211   


Q ss_pred             ------chhhhhHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy16087        163 ------DFIIYSSLSSFYIPCIIMVFLYYNIFKALSKR  194 (252)
Q Consensus       163 ------~~~~~~~~~~~~lp~~~i~~~y~~I~~~lr~~  194 (252)
                            .+......+.+++|++++.++|.++.+++|++
T Consensus       196 ~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~  233 (348)
T d1u19a_         196 EETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA  233 (348)
T ss_dssp             GGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSC
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence                  14455566677899999999999998877653