Psyllid ID: psy16111

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP
ccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHccc
mmldipedneegeqdtpdkpkELKQLWTGCFQQSMNEFLQQFNesisvdevlyredIAGSIAHVTMLgerniideqDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNvgrklhtgktlkalllp
mmldipedneegeqdtpdkPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTmlgerniideqdKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELirrignvgrklhtgktlkalllp
MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP
************************QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKTLK*****
******************************FQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLL*
******************KPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP
******************************FQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLDIPEDNEEGEQDTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query137 2.2.26 [Sep-21-2011]
A6TL09 460 Argininosuccinate lyase O yes N/A 0.773 0.230 0.537 2e-26
Q4L4X6 460 Argininosuccinate lyase O yes N/A 0.759 0.226 0.509 1e-25
C4Z0V2 458 Argininosuccinate lyase O yes N/A 0.773 0.231 0.518 2e-25
A3DBU0 458 Argininosuccinate lyase O yes N/A 0.773 0.231 0.509 5e-25
C6E6Y9 458 Argininosuccinate lyase O yes N/A 0.773 0.231 0.509 2e-24
B8I1A0 459 Argininosuccinate lyase O yes N/A 0.773 0.230 0.481 2e-24
B5ED16 458 Argininosuccinate lyase O yes N/A 0.773 0.231 0.5 2e-24
A1ATU1 458 Argininosuccinate lyase O yes N/A 0.773 0.231 0.490 3e-24
Q0VM25 464 Argininosuccinate lyase O yes N/A 0.802 0.237 0.427 4e-24
B2V6Y7 459 Argininosuccinate lyase O yes N/A 0.781 0.233 0.514 5e-24
>sp|A6TL09|ARLY_ALKMQ Argininosuccinate lyase OS=Alkaliphilus metalliredigens (strain QYMF) GN=argH PE=3 SV=1 Back     alignment and function desciption
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 75/106 (70%)

Query: 25  QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKT 84
           +LW G F ++    + QFN SI  D+ LY+ DIAGS+AH  ML   NII +Q+ +LIV+ 
Sbjct: 2   KLWGGRFSKNTAALVDQFNASIEFDQKLYKYDIAGSVAHAKMLAHANIITKQESQLIVEG 61

Query: 85  LKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
           L+ I  DIE GKVE ++ELEDIHMNIE+ LI  IG VG+KLHT ++
Sbjct: 62  LQSILADIEAGKVEFQLELEDIHMNIETLLIDSIGEVGKKLHTARS 107

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 1
>sp|Q4L4X6|ARLY_STAHJ Argininosuccinate lyase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|C4Z0V2|ARLY_EUBE2 Argininosuccinate lyase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|A3DBU0|ARLY_CLOTH Argininosuccinate lyase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|C6E6Y9|ARLY_GEOSM Argininosuccinate lyase OS=Geobacter sp. (strain M21) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B8I1A0|ARLY_CLOCE Argininosuccinate lyase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B5ED16|ARLY_GEOBB Argininosuccinate lyase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|A1ATU1|ARLY_PELPD Argininosuccinate lyase OS=Pelobacter propionicus (strain DSM 2379) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q0VM25|ARLY_ALCBS Argininosuccinate lyase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B2V6Y7|ARLY_SULSY Argininosuccinate lyase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=argH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
315924504 460 argininosuccinate lyase [Pseudoramibacte 0.781 0.232 0.570 5e-27
379011214 459 argininosuccinate lyase ArgH [Acetobacte 0.788 0.235 0.509 9e-26
310827766 459 argininosuccinate lyase [Eubacterium lim 0.788 0.235 0.518 4e-25
150388487 460 argininosuccinate lyase [Alkaliphilus me 0.773 0.230 0.537 1e-24
374295616 461 argininosuccinate lyase [Clostridium cla 0.773 0.229 0.518 2e-24
339443478 467 argininosuccinate lyase [Clostridium sp. 0.788 0.231 0.5 2e-24
291562711 457 argininosuccinate lyase [butyrate-produc 0.773 0.231 0.490 2e-24
366166424 461 argininosuccinate lyase [Acetivibrio cel 0.773 0.229 0.518 2e-24
314936820 459 argininosuccinate lyase [Staphylococcus 0.759 0.226 0.557 3e-24
228474264 459 argininosuccinate lyase [Staphylococcus 0.759 0.226 0.557 3e-24
>gi|315924504|ref|ZP_07920725.1| argininosuccinate lyase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622208|gb|EFV02168.1| argininosuccinate lyase [Pseudoramibacter alactolyticus ATCC 23263] Back     alignment and taxonomy information
 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/107 (57%), Positives = 79/107 (73%)

Query: 24  KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
           K+LW+G FQ+  +     FN SI+ D+ LY +DI GSIAH  MLG++ II   D +LIVK
Sbjct: 3   KKLWSGRFQKGTDALTDDFNSSIAFDQRLYHQDIRGSIAHAKMLGKQKIIPPDDADLIVK 62

Query: 84  TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
           TL++I  DIE GK+   VE+EDIHMNIES LI RIG+VG+KLHTG++
Sbjct: 63  TLQEILEDIEAGKITFSVEMEDIHMNIESLLIDRIGDVGKKLHTGRS 109

Source: Pseudoramibacter alactolyticus ATCC 23263

Species: Pseudoramibacter alactolyticus

Genus: Pseudoramibacter

Family: Eubacteriaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria
>gi|379011214|ref|YP_005269026.1| argininosuccinate lyase ArgH [Acetobacterium woodii DSM 1030] gi|375302003|gb|AFA48137.1| argininosuccinate lyase ArgH [Acetobacterium woodii DSM 1030] Back     alignment and taxonomy information
>gi|310827766|ref|YP_003960123.1| argininosuccinate lyase [Eubacterium limosum KIST612] gi|308739500|gb|ADO37160.1| argininosuccinate lyase [Eubacterium limosum KIST612] Back     alignment and taxonomy information
>gi|150388487|ref|YP_001318536.1| argininosuccinate lyase [Alkaliphilus metalliredigens QYMF] gi|166988202|sp|A6TL09.1|ARLY_ALKMQ RecName: Full=Argininosuccinate lyase; Short=ASAL; AltName: Full=Arginosuccinase gi|149948349|gb|ABR46877.1| argininosuccinate lyase [Alkaliphilus metalliredigens QYMF] Back     alignment and taxonomy information
>gi|374295616|ref|YP_005045807.1| argininosuccinate lyase [Clostridium clariflavum DSM 19732] gi|359825110|gb|AEV67883.1| argininosuccinate lyase [Clostridium clariflavum DSM 19732] Back     alignment and taxonomy information
>gi|339443478|ref|YP_004709483.1| argininosuccinate lyase [Clostridium sp. SY8519] gi|338902879|dbj|BAK48381.1| argininosuccinate lyase [Clostridium sp. SY8519] Back     alignment and taxonomy information
>gi|291562711|emb|CBL41527.1| argininosuccinate lyase [butyrate-producing bacterium SS3/4] Back     alignment and taxonomy information
>gi|366166424|ref|ZP_09466179.1| argininosuccinate lyase [Acetivibrio cellulolyticus CD2] Back     alignment and taxonomy information
>gi|314936820|ref|ZP_07844167.1| argininosuccinate lyase [Staphylococcus hominis subsp. hominis C80] gi|313655439|gb|EFS19184.1| argininosuccinate lyase [Staphylococcus hominis subsp. hominis C80] Back     alignment and taxonomy information
>gi|228474264|ref|ZP_04058999.1| argininosuccinate lyase [Staphylococcus hominis SK119] gi|228271623|gb|EEK12970.1| argininosuccinate lyase [Staphylococcus hominis SK119] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query137
TAIR|locus:2183825 517 AT5G10920 [Arabidopsis thalian 0.839 0.222 0.456 4.8e-22
TIGR_CMR|CHY_2259 456 CHY_2259 "argininosuccinate ly 0.773 0.232 0.481 5e-22
TIGR_CMR|GSU_0156 458 GSU_0156 "argininosuccinate ly 0.781 0.233 0.448 5.1e-21
TIGR_CMR|ECH_0937 470 ECH_0937 "argininosuccinate ly 0.766 0.223 0.466 2.6e-20
TIGR_CMR|BA_4879 462 BA_4879 "argininosuccinate lya 0.788 0.233 0.416 1.4e-18
TIGR_CMR|CJE_1009 460 CJE_1009 "argininosuccinate ly 0.773 0.230 0.411 1.8e-18
TIGR_CMR|SPO_0332 463 SPO_0332 "argininosuccinate ly 0.802 0.237 0.372 7.1e-14
TIGR_CMR|DET_1261 461 DET_1261 "argininosuccinate ly 0.729 0.216 0.4 9e-14
POMBASE|SPBC1773.14 461 arg7 "argininosuccinate lyase" 0.802 0.238 0.345 4e-13
UNIPROTKB|Q9KNT9 458 argH "Argininosuccinate lyase" 0.766 0.229 0.330 6.2e-12
TAIR|locus:2183825 AT5G10920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 263 (97.6 bits), Expect = 4.8e-22, P = 4.8e-22
 Identities = 53/116 (45%), Positives = 77/116 (66%)

Query:    15 DTPDKPKELKQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIID 74
             D     KE+K LW G F++S+ E +++F ESIS D+VLY++DI GS AH +ML  + +I 
Sbjct:    50 DDDTASKEVK-LWGGRFEESVTEKVEKFTESISFDKVLYKQDIMGSKAHASMLAHQGLIT 108

Query:    75 EQDKELIVKTLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
             + DK+ I++ L DIE  IE  K E + + ED+HMNIE+ L   IG   +KLHT ++
Sbjct:   109 DSDKDSILRGLDDIERQIEANKFEWRTDREDVHMNIEAALTDLIGEPAKKLHTARS 164
GO:0003824 "catalytic activity" evidence=IEA
GO:0004056 "argininosuccinate lyase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
TIGR_CMR|CHY_2259 CHY_2259 "argininosuccinate lyase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0156 GSU_0156 "argininosuccinate lyase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0937 ECH_0937 "argininosuccinate lyase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4879 BA_4879 "argininosuccinate lyase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1009 CJE_1009 "argininosuccinate lyase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0332 SPO_0332 "argininosuccinate lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1261 DET_1261 "argininosuccinate lyase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
POMBASE|SPBC1773.14 arg7 "argininosuccinate lyase" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNT9 argH "Argininosuccinate lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2V6Y7ARLY_SULSY4, ., 3, ., 2, ., 10.51400.78100.2331yesN/A
A6TL09ARLY_ALKMQ4, ., 3, ., 2, ., 10.53770.77370.2304yesN/A
C4Z0V2ARLY_EUBE24, ., 3, ., 2, ., 10.51880.77370.2314yesN/A
A3DBU0ARLY_CLOTH4, ., 3, ., 2, ., 10.50940.77370.2314yesN/A
Q4L4X6ARLY_STAHJ4, ., 3, ., 2, ., 10.50960.75910.2260yesN/A
C6E6Y9ARLY_GEOSM4, ., 3, ., 2, ., 10.50940.77370.2314yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
PRK00855 459 PRK00855, PRK00855, argininosuccinate lyase; Provi 7e-44
COG0165 459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 2e-36
cd01359 435 cd01359, Argininosuccinate_lyase, Argininosuccinat 5e-33
PLN02646 474 PLN02646, PLN02646, argininosuccinate lyase 2e-32
TIGR00838 455 TIGR00838, argH, argininosuccinate lyase 4e-28
PRK04833 455 PRK04833, PRK04833, argininosuccinate lyase; Provi 9e-19
cd01334 325 cd01334, Lyase_I, Lyase class I family; a group of 2e-17
PRK12308 614 PRK12308, PRK12308, bifunctional argininosuccinate 2e-15
PRK06389 434 PRK06389, PRK06389, argininosuccinate lyase; Provi 4e-08
pfam00206 312 pfam00206, Lyase_1, Lyase 0.001
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional Back     alignment and domain information 
 Score =  148 bits (377), Expect = 7e-44
 Identities = 53/105 (50%), Positives = 70/105 (66%)

Query: 24  KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
            +LW G F +  +E +++F  SIS D+ L  EDIAGSIAH  ML ++ I+ E++ E I+ 
Sbjct: 4   NKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILA 63

Query: 84  TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTG 128
            L +I  +IE GK E   ELEDIHM IE+ L  RIG+VG KLHTG
Sbjct: 64  GLDEILEEIEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLHTG 108

Length = 459
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 137
COG0165 459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
KOG1316|consensus 464 100.0
PRK06389 434 argininosuccinate lyase; Provisional 100.0
PLN02646 474 argininosuccinate lyase 99.97
TIGR00838 455 argH argininosuccinate lyase. This model describes 99.94
PRK00855 459 argininosuccinate lyase; Provisional 99.94
PRK06705 502 argininosuccinate lyase; Provisional 99.93
PRK04833 455 argininosuccinate lyase; Provisional 99.92
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 99.92
PRK02186 887 argininosuccinate lyase; Provisional 99.79
cd01359 435 Argininosuccinate_lyase Argininosuccinate lyase (a 99.77
PRK14515 479 aspartate ammonia-lyase; Provisional 99.77
PRK00485 464 fumC fumarate hydratase; Reviewed 99.73
PF00206 312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 99.69
PRK12425 464 fumarate hydratase; Provisional 99.69
cd01334 325 Lyase_I Lyase class I family; a group of proteins 99.69
PLN00134 458 fumarate hydratase; Provisional 99.64
PRK12273 472 aspA aspartate ammonia-lyase; Provisional 99.62
cd01357 450 Aspartase Aspartase. This subgroup contains Escher 99.62
cd01596 450 Aspartase_like aspartase (L-aspartate ammonia-lyas 99.62
cd01595 381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 99.6
cd01362 455 Fumarase_classII Class II fumarases. This subgroup 99.58
cd01360 387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 99.54
cd01597 437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 99.53
PRK13353 473 aspartate ammonia-lyase; Provisional 99.53
TIGR02426 338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 99.51
PRK06390 451 adenylosuccinate lyase; Provisional 99.48
PRK08540 449 adenylosuccinate lyase; Reviewed 99.43
TIGR00839 468 aspA aspartate ammonia-lyase. Fumarate hydratase s 99.43
TIGR00928 435 purB adenylosuccinate lyase. This family consists 99.42
TIGR00979 458 fumC_II fumarate hydratase, class II. Putative fum 99.37
PRK08470 442 adenylosuccinate lyase; Provisional 99.3
PRK09285 456 adenylosuccinate lyase; Provisional 99.14
PRK05975 351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 98.99
PRK07492 435 adenylosuccinate lyase; Provisional 98.73
PRK07380 431 adenylosuccinate lyase; Provisional 98.54
cd01598 425 PurB PurB_like adenylosuccinases (adenylsuccinate 98.41
cd03302 436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 98.15
PRK09053 452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 98.03
PLN02848 458 adenylosuccinate lyase 97.96
COG0015 438 PurB Adenylosuccinate lyase [Nucleotide transport 95.94
cd01594 231 Lyase_I_like Lyase class I_like superfamily: conta 92.21
PF1092559 DUF2680: Protein of unknown function (DUF2680); In 81.38
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-39  Score=281.66  Aligned_cols=114  Identities=42%  Similarity=0.684  Sum_probs=112.1

Q ss_pred             hhhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q psy16111         24 KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVEL  103 (137)
Q Consensus        24 ~~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~  103 (137)
                      +++|+|||.+++++.+..|+.|+.||++|++|||.+++||++||.++|||+++++++|+++|.+|.+++.+|+|.+++.+
T Consensus         3 ~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~~~   82 (459)
T COG0165           3 NKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPDD   82 (459)
T ss_pred             CCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111        104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP  137 (137)
Q Consensus       104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat  137 (137)
                      ||||++||++|++++|++||||||||||||||||
T Consensus        83 EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVat  116 (459)
T COG0165          83 EDVHTAIEARLIERIGDVGGKLHTGRSRNDQVAT  116 (459)
T ss_pred             ccHHHHHHHHHHHHHhhhhchhccccchhHHHHH
Confidence            9999999999999999999999999999999987

>KOG1316|consensus Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
2e9f_A 462 Crystal Structure Of T.th.hb8 Argininosuccinate Lya 2e-14
1tj7_A 457 Structure Determination And Refinement At 2.44 A Re 3e-11
1tjv_A 474 Crystal Structure Of T161d Duck Delta 2 Crystallin 1e-10
1tju_A 474 Crystal Structure Of T161s Duck Delta 2 Crystallin 1e-10
1hy1_A 468 Crystal Structure Of Wild Type Duck Delta 2 Crystal 1e-10
1k7w_A 468 Crystal Structure Of S283a Duck Delta 2 Crystallin 1e-10
1auw_A 468 H91n Delta 2 Crystallin From Duck Length = 468 8e-10
1aos_A 464 Human Argininosuccinate Lyase Length = 464 1e-09
1k62_A 464 Crystal Structure Of The Human Argininosuccinate Ly 3e-09
1u15_A 472 Crystal Structure Of A Duck-Delta-Crystallin-1 Doub 2e-08
1hy0_A 466 Crystal Structure Of Wild Type Duck Delta 1 Crystal 3e-07
1dcn_A 447 Inactive Mutant H162n Of Delta 2 Crystallin With Bo 3e-06
1xwo_A 465 Crystal Structrue Of Goose Delta Crystallin Length 5e-06
1i0a_A 466 Crystal Structure Of Wild Type Turkey Delta 1 Cryst 6e-06
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462 Back     alignment and structure 
Iteration: 1

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 59/104 (56%)
Query: 27  WTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLK 86
           W G F +  +    +FN S++ D  L+RED+  +  H  ML    ++  ++ E I+K L 
Sbjct: 6   WGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLD 65
Query: 87  DIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
            IE +IE G    + ELED+HMN+E+ L   +G  G KLHT ++
Sbjct: 66  RIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARS 109
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457 Back     alignment and structure
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin (Eye Lens Protein) Length = 468 Back     alignment and structure
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant Length = 468 Back     alignment and structure
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck Length = 468 Back     alignment and structure
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase Length = 464 Back     alignment and structure
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase Q286r Mutant Length = 464 Back     alignment and structure
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop Mutant (Dlm) Length = 472 Back     alignment and structure
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin (Eye Lens Protein) Length = 466 Back     alignment and structure
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound Argininosuccinate Length = 447 Back     alignment and structure
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin Length = 465 Back     alignment and structure
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin (Eye Lens Protein) Length = 466 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query137
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 1e-46
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 5e-44
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 6e-44
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Length = 462 Back     alignment and structure
 Score =  155 bits (394), Expect = 1e-46
 Identities = 38/105 (36%), Positives = 58/105 (55%)

Query: 24  KQLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVK 83
            + W G F +  +    +FN S++ D  L+RED+  +  H  ML    ++  ++ E I+K
Sbjct: 3   HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILK 62

Query: 84  TLKDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTG 128
            L  IE +IE G    + ELED+HMN+E+ L   +G  G KLHT 
Sbjct: 63  GLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTA 107
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Length = 468 Back     alignment and structure
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Length = 457 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 99.92
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 99.91
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 99.9
1fur_A 467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 99.74
1vdk_A 466 Fumarase C, fumarate hydratase class II; TCA cycle 99.74
1jsw_A 478 L-aspartase, L-aspartate ammonia-lyase; amino acid 99.69
1yfm_A 488 Fumarase, YFUM; lyase, krebs cycle, active site wa 99.67
2qga_B 465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 99.66
3bhg_A 459 Adenylosuccinate lyase; structural G PSI-2, protei 99.65
1q5n_A 454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 99.62
3c8t_A 451 Fumarate lyase; structural genomics, PSI-2, protei 99.59
4adm_A 495 Fumarase C, fumarate hydratase class II; lyase, tr 99.57
2ptr_A 462 Adenylosuccinate lyase; mutant-substrate complex; 99.54
1dof_A 403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 99.48
1c3c_A 429 Protein (adenylosuccinate lyase); purine biosynthe 99.47
2pfm_A 444 Adenylosuccinate lyase; PURB, purine biosynthesis, 99.45
1re5_A 450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 99.38
3r6q_A 468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 99.37
2fel_A 359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 99.33
4eei_A 438 Adenylosuccinate lyase; structural genomics, niaid 99.28
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 99.27
3ocf_A 478 Fumarate lyase:delta crystallin; fumarase, brucell 99.27
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 99.13
3e04_A 490 Fumarase, fumarate hydratase; TCA cycle, structura 99.07
3gtd_A 482 Fumarase C, fumarate hydratase class II; structura 99.03
4hgv_A 495 Fumarase C, fumarate hydratase class II; nysgrc, P 97.91
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
Probab=99.92  E-value=7.1e-26  Score=194.93  Aligned_cols=113  Identities=29%  Similarity=0.523  Sum_probs=107.5

Q ss_pred             hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccC-CCC
Q psy16111         25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELK-VEL  103 (137)
Q Consensus        25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~-~~~  103 (137)
                      ++|+|||++.+++.+..|+.|+.||++|++++|.+++||+.||.+.|+||++++..|.++++++...+..+.|+++ +..
T Consensus         2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~   81 (457)
T 1tj7_A            2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDA   81 (457)
T ss_dssp             -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCC
T ss_pred             cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCCC
Confidence            6999999999999999999999999999999999999999999999999999999999999999887778888887 789


Q ss_pred             chHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111        104 EDIHMNIESELIRRIGNVGRKLHTGKTLKALLLP  137 (137)
Q Consensus       104 EDih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat  137 (137)
                      +|+|+++|++|++++|+.|+++|+||||||++.|
T Consensus        82 ~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~T  115 (457)
T 1tj7_A           82 EDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVAT  115 (457)
T ss_dssp             SSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHccccccceecCCChhhHHHH
Confidence            9999999999999999999999999999999865
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 137
d1k62b_ 459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 2e-32
d1tj7a_ 455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 7e-32
d1tjva_ 449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 3e-31
d1q5na_ 444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 8e-09
d1re5a_ 448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 3e-06
d1j3ua_ 462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 0.002
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 32/105 (30%), Positives = 54/105 (51%)

Query: 26  LWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTL 85
           LW G F  +++  +++FN SI+ D  L+  D+ GS A+   L +  ++ + + + I+  L
Sbjct: 3   LWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGL 62

Query: 86  KDIEYDIEHGKVELKVELEDIHMNIESELIRRIGNVGRKLHTGKT 130
             +  +   G  +L    EDIH   E  L   IG    KLHTG++
Sbjct: 63  DKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRS 107
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query137
d1k62b_ 459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1tj7a_ 455 Argininosuccinate lyase/delta-crystallin {Escheric 99.97
d1tjva_ 449 Argininosuccinate lyase/delta-crystallin {Domestic 99.95
d1f1oa_ 408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 99.33
d1re5a_ 448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 99.3
d1q5na_ 444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 99.15
d1j3ua_ 462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 99.11
d1c3ca_ 429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 99.06
d1fuoa_ 456 Fumarase {Escherichia coli [TaxId: 562]} 99.02
d1dofa_ 402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 98.83
d1yfma_ 459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 98.59
d1jswa_ 459 L-aspartate ammonia lyase {Escherichia coli [TaxId 98.21
d1vdka_ 460 Fumarase {Thermus thermophilus [TaxId: 274]} 98.08
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=242.74  Aligned_cols=113  Identities=28%  Similarity=0.489  Sum_probs=110.7

Q ss_pred             hhhhccCCCchHHHHHHHhhCHHHHHHhHHHhhhhcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Q psy16111         25 QLWTGCFQQSMNEFLQQFNESISVDEVLYREDIAGSIAHVTMLGERNIIDEQDKELIVKTLKDIEYDIEHGKVELKVELE  104 (137)
Q Consensus        25 ~lw~gR~~~~~~~~~~~f~~s~~~D~~L~~~di~~~~AH~~mL~~~GIIs~~ea~~I~~aL~~l~~~~~~g~~~~~~~~E  104 (137)
                      |||+|||++++++.+++|++|+.||++||+|||++++||+.||.++||||++++++|+++|++|..++.+|.|.+++.+|
T Consensus         2 klW~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~I~~al~~i~~~~~~~~~~~~~~~e   81 (459)
T d1k62b_           2 KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDE   81 (459)
T ss_dssp             CSSCSCCCCSSCHHHHHTTCCHHHHGGGHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTTCC
T ss_pred             CCCCccCCcchhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCccc
Confidence            69999999999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             hHHHHHHHHHHHHhCcccccccccccchhhcCC
Q psy16111        105 DIHMNIESELIRRIGNVGRKLHTGKTLKALLLP  137 (137)
Q Consensus       105 Dih~~iE~~L~e~~G~~gg~lHtGRSRNDqvat  137 (137)
                      |+|++||.+|++++|+.|+++|+||||||++.|
T Consensus        82 d~~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~T  114 (459)
T d1k62b_          82 DIHTANERRLKELIGATAGKLHTGRSRNDQVVT  114 (459)
T ss_dssp             SHHHHHHHHHHHTTSSGGGGTTTTCCHHHHHHH
T ss_pred             chHHHHHHHHHHhhhhcccccCCCCCcchHHHH
Confidence            999999999999999999999999999999875
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure